
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/UCEC-TP/2404665/1.GDAC_mergedClustering.Finished/UCEC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/UCEC-TP/2332310/1.GDAC_clinicalDataPicker.Finished/UCEC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=451, in cluster file=501, common to both=451
[1]  10 451
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
13 19 14  8 
 1  2  3  4 
13 19 14  8 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
20 15 19 
 1  2  3 
20 15 19 
[1] "CN_CNMF"
[1] 3
  1   2   3   4   5 
273  37 111  16   6 
  1   2   3   4   5 
273  37 111  16   6 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
119  73 142 
  1   2   3 
119  73 142 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4  5  6 
41 38 41 16 38 26 
 1  2  3  4  5  6 
41 38 41 16 38 26 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4  5  6 
 7 33 39 39 56 26 
 1  2  3  4  5  6 
 7 33 39 39 56 26 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
142 113 114 
  1   2   3 
142 113 114 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3   4 
 65  98  65 141 
  1   2   3   4 
 65  98  65 141 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
159 146 131 
  1   2   3 
159 146 131 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 24 207 205 
  1   2   3 
 24 207 205 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "TUMORGRADE"                            
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 451 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0G9 TCGA-A5-A0GA 
          NA         4053         1079          790         2165           NA 
TCGA-A5-A0GB TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GH TCGA-A5-A0GI 
         275           97         2717         2516         1671         1750 
TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-A5-A0GN TCGA-A5-A0GP TCGA-A5-A0GQ TCGA-A5-A0GR 
        1447         1448         1477         1087         1167          780 
TCGA-A5-A0GU TCGA-A5-A0GV TCGA-A5-A0GW TCGA-A5-A0GX TCGA-A5-A0R6 TCGA-A5-A0R7 
         495          485          385          924          369           40 
TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VO TCGA-A5-A0VP TCGA-A5-A0VQ 
         125          294          555          128          927          177 
TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-A5-A2K2 TCGA-A5-A2K3 
         241          348          292          243         2768         1409 
TCGA-A5-A2K4 TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-A5-A3LO TCGA-A5-A3LP TCGA-AJ-A23M 
          NA          161          156          223          230           31 
TCGA-AJ-A23O TCGA-AJ-A2QK TCGA-AJ-A2QL TCGA-AJ-A2QM TCGA-AJ-A2QN TCGA-AJ-A2QO 
          60           12           49           31           61           91 
TCGA-AJ-A3BD TCGA-AJ-A3BF TCGA-AJ-A3BG TCGA-AJ-A3BH TCGA-AJ-A3BI TCGA-AJ-A3BK 
          15           34           31           NA           61           51 
TCGA-AJ-A3EJ TCGA-AJ-A3EK TCGA-AJ-A3EL TCGA-AJ-A3EM TCGA-AJ-A3I9 TCGA-AJ-A3IA 
          NA           64           65           50           39           28 
TCGA-AJ-A3NC TCGA-AJ-A3NE TCGA-AJ-A3NF TCGA-AJ-A3NG TCGA-AJ-A3NH TCGA-AJ-A3OJ 
         210           78           41           52           NA           59 
TCGA-AJ-A3OK TCGA-AP-A051 TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 
         142         2545           NA          181           NA         2026 
TCGA-AP-A059 TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A05N 
         250         1198         1364          831          639          239 
TCGA-AP-A05O TCGA-AP-A05P TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LD TCGA-AP-A0LE 
         371          260           NA         3443         2906         2986 
TCGA-AP-A0LF TCGA-AP-A0LG TCGA-AP-A0LH TCGA-AP-A0LI TCGA-AP-A0LJ TCGA-AP-A0LL 
         103         1921           NA         2602          965         2141 
TCGA-AP-A0LM TCGA-AP-A0LN TCGA-AP-A0LO TCGA-AP-A0LP TCGA-AP-A0LQ TCGA-AP-A0LS 
         825         1992           NA         1875         1906         1668 
TCGA-AP-A0LT TCGA-AP-A0LV TCGA-AP-A1DH TCGA-AP-A1DK TCGA-AP-A1DM TCGA-AP-A1DO 
        1185          385         1816         1650         1329          952 
TCGA-AP-A1DP TCGA-AP-A1DQ TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 
          NA         1184         1131          204          691          317 
TCGA-AP-A1E3 TCGA-AP-A1E4 TCGA-AW-A1PO TCGA-AX-A05S TCGA-AX-A05T TCGA-AX-A05U 
         523          267           17           NA          603          902 
TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A062 TCGA-AX-A063 
        2078         2191         1413         1075         1398         2024 
TCGA-AX-A064 TCGA-AX-A06B TCGA-AX-A06D TCGA-AX-A06F TCGA-AX-A06H TCGA-AX-A06J 
        1064         1639           NA         1554          833          913 
TCGA-AX-A06L TCGA-AX-A0IS TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A0IZ TCGA-AX-A0J0 
        1479         1065          868         1148         1333         1219 
TCGA-AX-A0J1 TCGA-AX-A1C4 TCGA-AX-A1C5 TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1C9 
        2004          404          584          515          412          464 
TCGA-AX-A1CA TCGA-AX-A1CC TCGA-AX-A1CE TCGA-AX-A1CF TCGA-AX-A1CI TCGA-AX-A1CJ 
         617          378          610         2337         2207         1645 
TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 
        2052          764         1107          337           NA           NA 
TCGA-AX-A2H5 TCGA-AX-A2H7 TCGA-AX-A2H8 TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HD 
        2167         1020         1861         2090         1016         1232 
TCGA-AX-A2HF TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A2HJ TCGA-AX-A2HK TCGA-AX-A2IN 
         489          660          539          831           NA           NA 
TCGA-AX-A2IO TCGA-AX-A3FS TCGA-AX-A3FT TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3FZ 
        1176            7            3           10            4            6 
TCGA-AX-A3G1 TCGA-AX-A3G3 TCGA-AX-A3G4 TCGA-AX-A3G6 TCGA-AX-A3G7 TCGA-AX-A3G8 
          NA            1            4           NA            7           36 
TCGA-AX-A3G9 TCGA-AX-A3GB TCGA-AX-A3GI TCGA-B5-A0JN TCGA-B5-A0JR TCGA-B5-A0JS 
         254          440            4         2068         1465         1241 
TCGA-B5-A0JT TCGA-B5-A0JU TCGA-B5-A0JV TCGA-B5-A0JX TCGA-B5-A0JY TCGA-B5-A0JZ 
        1312         1483         1125         1360          821          689 
TCGA-B5-A0K0 TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0K3 TCGA-B5-A0K4 TCGA-B5-A0K6 
         679          746          682          700          466          426 
TCGA-B5-A0K7 TCGA-B5-A0K8 TCGA-B5-A0K9 TCGA-B5-A0KB TCGA-B5-A11E TCGA-B5-A11F 
         372          542          166          124          265         5279 
TCGA-B5-A11G TCGA-B5-A11H TCGA-B5-A11I TCGA-B5-A11J TCGA-B5-A11L TCGA-B5-A11M 
        3076         2317         2038         1291         1396         1117 
TCGA-B5-A11N TCGA-B5-A11O TCGA-B5-A11P TCGA-B5-A11Q TCGA-B5-A11R TCGA-B5-A11S 
        1147         1034         1120          702          837          650 
TCGA-B5-A11U TCGA-B5-A11V TCGA-B5-A11W TCGA-B5-A11X TCGA-B5-A11Y TCGA-B5-A11Z 
         271          231          339          337          315          291 
TCGA-B5-A121 TCGA-B5-A1MR TCGA-B5-A1MU TCGA-B5-A1MV TCGA-B5-A1MW TCGA-B5-A1MX 
         259         5690           NA          380          220          174 
TCGA-B5-A1MY TCGA-B5-A1MZ TCGA-B5-A1N2 TCGA-B5-A3FC TCGA-BG-A0LW TCGA-BG-A0LX 
          NA          465          389         1890          194          252 
TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0M3 TCGA-BG-A0M4 TCGA-BG-A0M6 TCGA-BG-A0M7 
         237          316          742          480          241          698 
TCGA-BG-A0M8 TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC TCGA-BG-A0MG TCGA-BG-A0MH 
         690          765           NA          827          896         1341 
TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MQ TCGA-BG-A0MS TCGA-BG-A0MT TCGA-BG-A0MU 
          NA         1021          761          553          240          231 
TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VX TCGA-BG-A0VZ 
         128          224          260          131          490          868 
TCGA-BG-A0W1 TCGA-BG-A0W2 TCGA-BG-A0YU TCGA-BG-A0YV TCGA-BG-A186 TCGA-BG-A187 
         907         1151          279          186          230          231 
TCGA-BG-A18A TCGA-BG-A18B TCGA-BG-A18C TCGA-BG-A220 TCGA-BG-A221 TCGA-BG-A222 
         252          155          169          220           46           14 
TCGA-BG-A2AD TCGA-BG-A2AE TCGA-BG-A2L7 TCGA-BK-A0C9 TCGA-BK-A0CA TCGA-BK-A0CB 
          NA           16          177          289          371          188 
TCGA-BK-A0CC TCGA-BK-A139 TCGA-BK-A13B TCGA-BK-A13C TCGA-BK-A26L TCGA-BS-A0T9 
         211          239          578          202          233           NA 
TCGA-BS-A0TA TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0TE TCGA-BS-A0TG TCGA-BS-A0TI 
         714         2260         2002           NA         2034         1443 
TCGA-BS-A0TJ TCGA-BS-A0U5 TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0U9 TCGA-BS-A0UA 
        1514         2204           NA         2606         1749         2540 
TCGA-BS-A0UF TCGA-BS-A0UJ TCGA-BS-A0UL TCGA-BS-A0UM TCGA-BS-A0UT TCGA-BS-A0UV 
        1843           27           36         2191          595          149 
TCGA-BS-A0V4 TCGA-BS-A0V6 TCGA-BS-A0V7 TCGA-BS-A0V8 TCGA-BS-A0VI TCGA-BS-A0WQ 
          31         1650         1429         1507         1661         1207 
TCGA-D1-A0ZN TCGA-D1-A0ZO TCGA-D1-A0ZP TCGA-D1-A0ZQ TCGA-D1-A0ZR TCGA-D1-A0ZS 
         512           69          690            8           17          147 
TCGA-D1-A0ZU TCGA-D1-A0ZV TCGA-D1-A0ZZ TCGA-D1-A101 TCGA-D1-A102 TCGA-D1-A103 
         578          350          377           53           43          480 
TCGA-D1-A15V TCGA-D1-A15W TCGA-D1-A15X TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A161 
        1012          915          909           NA          112          892 
TCGA-D1-A162 TCGA-D1-A163 TCGA-D1-A165 TCGA-D1-A167 TCGA-D1-A168 TCGA-D1-A169 
         976          938           20          478          913          905 
TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16G TCGA-D1-A16I 
         744          908          909           80           NA           NA 
TCGA-D1-A16J TCGA-D1-A16N TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16S 
         742          640          864          221           21          238 
TCGA-D1-A16V TCGA-D1-A16X TCGA-D1-A16Y TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 
          43          111          532          324          202          506 
TCGA-D1-A177 TCGA-D1-A179 TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17C TCGA-D1-A17D 
         347          206           19          212            1          160 
TCGA-D1-A17F TCGA-D1-A17H TCGA-D1-A17K TCGA-D1-A17L TCGA-D1-A17M TCGA-D1-A17N 
          39          454          429          459          311           46 
TCGA-D1-A17Q TCGA-D1-A17R TCGA-D1-A17S TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS 
          54           NA          326           70          396           43 
TCGA-D1-A1NU TCGA-D1-A1NW TCGA-D1-A1NX TCGA-D1-A1NY TCGA-D1-A1NZ TCGA-D1-A1O0 
         311           22          399          396            8            2 
TCGA-D1-A1O5 TCGA-D1-A1O7 TCGA-D1-A1O8 TCGA-D1-A2G0 TCGA-D1-A2G5 TCGA-D1-A2G6 
         377           32           NA          107         1260           NA 
TCGA-D1-A2G7 TCGA-D1-A3DA TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A0WH TCGA-DI-A1BU 
        1365            8           NA          125          405         1005 
TCGA-DI-A1BY TCGA-DI-A1C3 TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QT TCGA-DI-A2QU 
        1114          739          943           NA           NA           NA 
TCGA-DI-A2QY TCGA-E6-A1LX TCGA-E6-A1LZ TCGA-E6-A1M0 TCGA-E6-A2P8 TCGA-E6-A2P9 
        2797          711         1289          427           NA          202 
TCGA-EC-A1NJ TCGA-EC-A1QX TCGA-EC-A24G TCGA-EO-A1Y5 TCGA-EO-A1Y7 TCGA-EO-A1Y8 
          NA           66           46          332          243          328 
TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22T TCGA-EO-A22U TCGA-EO-A22X TCGA-EO-A22Y 
         972         1066         1004          825          929          701 
TCGA-EO-A2CG TCGA-EO-A2CH TCGA-EY-A1G7 TCGA-EY-A1G8 TCGA-EY-A1GC TCGA-EY-A1GD 
         672           NA           NA           NA          138          248 
TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI TCGA-EY-A1GJ TCGA-EY-A1GK 
         552          532          527          506          510          503 
TCGA-EY-A1GL TCGA-EY-A1GM TCGA-EY-A1GO TCGA-EY-A1GP TCGA-EY-A1GQ TCGA-EY-A1GR 
         424          209          360          348          340          344 
TCGA-EY-A1GS TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A1GV TCGA-EY-A1GW TCGA-EY-A1GX 
         284          300          259          257          260          166 
TCGA-EY-A1H0 TCGA-EY-A210 TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A215 TCGA-EY-A2OM 
         339          165          109          252          391          235 
TCGA-EY-A2ON TCGA-EY-A2OO TCGA-EY-A2OP TCGA-EY-A2OQ TCGA-FI-A2CX TCGA-FI-A2CY 
         171          774          503          293         1217         1064 
TCGA-FI-A2D0 TCGA-FI-A2D2 TCGA-FI-A2D4 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2EU 
        1034         1095           NA           NA          273         2557 
TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F4 TCGA-FI-A2F8 TCGA-FI-A2F9 
        1795          276           NA          880          761          791 
TCGA-H5-A2HR 
          53 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=40,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=345,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=17,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'TUMOR.GRADE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=28,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "HISTOLOGICAL.TYPE"                     
[3] "TUMOR.GRADE"                           
[4] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE" "3"           
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 451 columns, 1 survival variables, and 3 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=7, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 11  2
  subtype2 16  3
  subtype3 13  1
  subtype4  7  1
subtype1 subtype2 subtype3 subtype4 
      13       19       14        8 
subtype1 subtype2 subtype3 subtype4 
       2        3        1        1 
$subtype1
TCGA-A5-A0G2 TCGA-A5-A0GA TCGA-A5-A0GB TCGA-AP-A051 TCGA-AP-A0LT TCGA-AX-A05S 
      133.25        17.85         9.04        83.67        38.96        13.58 
TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A063 TCGA-AX-A064 TCGA-AX-A06F TCGA-B5-A0JR 
       46.45        35.34        66.54        34.98        51.09        48.16 
TCGA-B5-A0JZ 
       22.65 

$subtype2
TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GH TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 
       35.47        25.97        54.94        21.99         5.95        23.31 
TCGA-AP-A056 TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A0L8 
       66.61        39.39        44.84        27.32        21.01        48.79 
TCGA-AP-A0L9 TCGA-AP-A0LD TCGA-AX-A06B TCGA-AX-A0IW TCGA-AX-A0J1 TCGA-B5-A0K4 
      113.19        95.54        53.88        37.74        65.88        15.32 
TCGA-BK-A0CC 
        6.94 

$subtype3
TCGA-A5-A0GE TCGA-A5-A0GM TCGA-A5-A0GP TCGA-A5-A0GU TCGA-AP-A05P TCGA-AP-A0LH 
       89.33        47.61        35.74        16.27         8.55        36.36 
TCGA-AP-A0LJ TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A06J 
       31.73        19.82        29.65        68.32        72.03        30.02 
TCGA-B5-A0K1 TCGA-BK-A0C9 
       24.53         9.50 

$subtype4
TCGA-AP-A05N TCGA-AP-A0LG TCGA-AP-A0LN TCGA-AP-A0LV TCGA-AX-A062 TCGA-B5-A0K0 
        7.86        63.16        65.49        12.66        45.96        22.32 
TCGA-BG-A0LW TCGA-BG-A0MI 
        6.38        23.47 

subtype1 subtype2 subtype3 subtype4 
    9.04     5.95     8.55     6.38 
subtype1 subtype2 subtype3 subtype4 
  133.25   113.19    89.33    65.49 
subtype1 subtype2 subtype3 subtype4 
  38.960   37.740   30.875   22.895 
[1] "9.0 - 133.2 (39.0)" "6.0 - 113.2 (37.7)" "8.6 - 89.3 (30.9)" 
[4] "6.4 - 65.5 (22.9)" 
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype4"
[31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[37] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype1"
[43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[49] "subtype3" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype4"
[31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[37] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype1"
[43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[49] "subtype3" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype2"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype4"
[31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[37] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype1"
[43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[49] "subtype3" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
D1V2, continuous
D1V3, multiclass
D1V4, binary
          cls
clus        0  1
  subtype1  7  6
  subtype2 13  6
  subtype3  3 11
  subtype4  2  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    6
  subtype2   13    6
  subtype3    3   11
  subtype4    2    6
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         7       13        3        2
  YES        6        6       11        6

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 18  2
  subtype2 13  2
  subtype3 16  3
subtype1 subtype2 subtype3 
      20       15       19 
subtype1 subtype2 subtype3 
       2        2        3 
$subtype1
TCGA-A5-A0GE TCGA-A5-A0GM TCGA-A5-A0GU TCGA-AP-A05N TCGA-AP-A0LG TCGA-AP-A0LH 
       89.33        47.61        16.27         7.86        63.16        36.36 
TCGA-AP-A0LJ TCGA-AP-A0LN TCGA-AP-A0LV TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A05W 
       31.73        65.49        12.66        19.82        29.65        68.32 
TCGA-AX-A062 TCGA-AX-A064 TCGA-AX-A06J TCGA-B5-A0K0 TCGA-B5-A0K1 TCGA-BG-A0LW 
       45.96        34.98        30.02        22.32        24.53         6.38 
TCGA-BG-A0MI TCGA-BK-A0C9 
       23.47         9.50 

$subtype2
TCGA-A5-A0G2 TCGA-A5-A0G5 TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GP TCGA-AP-A051 
      133.25        25.97        17.85         9.04        35.74        83.67 
TCGA-AP-A056 TCGA-AP-A0LT TCGA-AX-A05S TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A063 
       66.61        38.96        13.58        46.45        35.34        66.54 
TCGA-AX-A06F TCGA-B5-A0JR TCGA-B5-A0JZ 
       51.09        48.16        22.65 

$subtype3
TCGA-A5-A0G3 TCGA-A5-A0GH TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A05A 
       35.47        54.94        21.99         5.95        23.31        39.39 
TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A05P TCGA-AP-A0L8 TCGA-AP-A0L9 
       44.84        27.32        21.01         8.55        48.79       113.19 
TCGA-AP-A0LD TCGA-AX-A05Y TCGA-AX-A06B TCGA-AX-A0IW TCGA-AX-A0J1 TCGA-B5-A0K4 
       95.54        72.03        53.88        37.74        65.88        15.32 
TCGA-BK-A0CC 
        6.94 

subtype1 subtype2 subtype3 
    6.38     9.04     5.95 
subtype1 subtype2 subtype3 
   89.33   133.25   113.19 
subtype1 subtype2 subtype3 
  29.835   38.960   37.740 
[1] "6.4 - 89.3 (29.8)"  "9.0 - 133.2 (39.0)" "6.0 - 113.2 (37.7)"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[43] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[43] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [7] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[43] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
D2V2, continuous
D2V3, multiclass
D2V4, binary
          cls
clus        0  1
  subtype1  5 15
  subtype2  9  6
  subtype3 11  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   15
  subtype2    9    6
  subtype3   11    8
     clus
vv    subtype1 subtype2 subtype3
  NO         5        9       11
  YES       15        6        8

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1 252  18
  subtype2  33   4
  subtype3  94  15
  subtype4  12   4
  subtype5   6   0
subtype1 subtype2 subtype3 subtype4 subtype5 
     270       37      109       16        6 
subtype1 subtype2 subtype3 subtype4 subtype5 
      18        4       15        4        0 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0G9 TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GD TCGA-A5-A0GE 
      106.88        71.18        17.85         9.04         3.19        89.33 
TCGA-A5-A0GG TCGA-A5-A0GH TCGA-A5-A0GI TCGA-A5-A0GM TCGA-A5-A0GP TCGA-A5-A0GQ 
       82.72        54.94        57.53        47.61        35.74        38.37 
TCGA-A5-A0GU TCGA-A5-A0GW TCGA-A5-A0GX TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA 
       16.27        12.66        30.38         4.11         9.67        18.25 
TCGA-A5-A0VP TCGA-A5-A0VQ TCGA-A5-A1OF TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-A5-A2K5 
       30.48         5.82         7.92         9.60         7.99         5.29 
TCGA-A5-A2K7 TCGA-AJ-A23O TCGA-AJ-A2QL TCGA-AJ-A2QO TCGA-AJ-A3BG TCGA-AJ-A3BK 
        5.13         1.97         1.61         2.99         1.02         1.68 
TCGA-AJ-A3EK TCGA-AJ-A3EL TCGA-AJ-A3NC TCGA-AJ-A3NE TCGA-AJ-A3OJ TCGA-AJ-A3OK 
        2.10         2.14         6.90         2.56         1.94         4.67 
TCGA-AP-A051 TCGA-AP-A054 TCGA-AP-A056 TCGA-AP-A059 TCGA-AP-A05N TCGA-AP-A05O 
       83.67        23.31        66.61         8.22         7.86        12.20 
TCGA-AP-A05P TCGA-AP-A0LD TCGA-AP-A0LE TCGA-AP-A0LG TCGA-AP-A0LH TCGA-AP-A0LJ 
        8.55        95.54        98.17        63.16        36.36        31.73 
TCGA-AP-A0LL TCGA-AP-A0LM TCGA-AP-A0LN TCGA-AP-A0LP TCGA-AP-A0LQ TCGA-AP-A0LS 
       70.39        27.12        65.49        61.64        62.66        54.84 
TCGA-AP-A0LT TCGA-AP-A0LV TCGA-AP-A1DH TCGA-AP-A1DK TCGA-AP-A1DM TCGA-AP-A1DP 
       38.96        12.66        59.70        54.25        43.69        35.54 
TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AP-A1E3 TCGA-AP-A1E4 
       37.18         6.71        22.72        10.42        17.19         8.78 
TCGA-AX-A05S TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A05Y TCGA-AX-A05Z TCGA-AX-A060 
       13.58        19.82        29.65        72.03        46.45        35.34 
TCGA-AX-A062 TCGA-AX-A063 TCGA-AX-A064 TCGA-AX-A06D TCGA-AX-A06F TCGA-AX-A06H 
       45.96        66.54        34.98        12.26        51.09        27.39 
TCGA-AX-A06J TCGA-AX-A06L TCGA-AX-A0IS TCGA-AX-A0IZ TCGA-AX-A0J0 TCGA-AX-A0J1 
       30.02        48.62        35.01        43.82        40.08        65.88 
TCGA-AX-A1C4 TCGA-AX-A1C5 TCGA-AX-A1C9 TCGA-AX-A1CC TCGA-AX-A1CE TCGA-AX-A1CI 
       13.28        19.20        15.25        12.43        20.05        72.56 
TCGA-AX-A1CJ TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HD 
       54.08        67.46        25.12        68.71        33.40        40.50 
TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A2HJ TCGA-AX-A2IN TCGA-AX-A3FS TCGA-AX-A3FT 
       21.70        17.72        27.32        31.10         0.23         0.10 
TCGA-AX-A3G8 TCGA-AX-A3G9 TCGA-AX-A3GB TCGA-B5-A0JR TCGA-B5-A0JS TCGA-B5-A0JU 
        1.18         8.35        14.47        48.16        40.80        48.76 
TCGA-B5-A0JV TCGA-B5-A0JX TCGA-B5-A0JY TCGA-B5-A0JZ TCGA-B5-A0K0 TCGA-B5-A0K1 
       36.99        44.71        26.99        22.65        22.32        24.53 
TCGA-B5-A0K2 TCGA-B5-A0K6 TCGA-B5-A0K7 TCGA-B5-A0K9 TCGA-B5-A11F TCGA-B5-A11G 
       22.42        14.01        12.23         5.46       173.56       101.13 
TCGA-B5-A11H TCGA-B5-A11J TCGA-B5-A11L TCGA-B5-A11N TCGA-B5-A11O TCGA-B5-A11Q 
       76.18        42.44        45.90        37.71        33.99        23.08 
TCGA-B5-A11U TCGA-B5-A11W TCGA-B5-A11Y TCGA-B5-A11Z TCGA-B5-A121 TCGA-B5-A1MR 
        8.91        11.15        10.36         9.57         8.52       187.07 
TCGA-B5-A1MV TCGA-B5-A1MW TCGA-B5-A1MX TCGA-B5-A1MZ TCGA-B5-A3FC TCGA-BG-A0LW 
       12.49         7.23         5.72        15.29        62.14         6.38 
TCGA-BG-A0LX TCGA-BG-A0M0 TCGA-BG-A0M3 TCGA-BG-A0M7 TCGA-BG-A0M9 TCGA-BG-A0MA 
        8.28         7.79        24.39        22.95        25.15        10.72 
TCGA-BG-A0MC TCGA-BG-A0MG TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MQ TCGA-BG-A0MU 
       27.19        29.46        23.47        33.57        25.02         7.59 
TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VX TCGA-BG-A0VZ TCGA-BG-A0W2 TCGA-BG-A0YU 
        8.55         4.31        16.11        28.54        37.84         9.17 
TCGA-BG-A186 TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B TCGA-BG-A220 TCGA-BG-A222 
        7.56         7.59         8.28         5.10         7.23         0.46 
TCGA-BG-A2L7 TCGA-BK-A0CA TCGA-BK-A0CB TCGA-BK-A13B TCGA-BK-A13C TCGA-BS-A0T9 
        5.82        12.20         6.18        19.00         6.64        46.95 
TCGA-BS-A0TA TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0TG TCGA-BS-A0TJ TCGA-BS-A0U5 
       23.47        74.30        65.82        66.87        49.78        72.46 
TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UA TCGA-BS-A0UF TCGA-BS-A0UJ TCGA-BS-A0UL 
       30.71        85.68        83.51        60.59         0.89         1.18 
TCGA-BS-A0V4 TCGA-BS-A0V6 TCGA-BS-A0V7 TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN 
        1.02        54.25        46.98        54.61        39.68        16.83 
TCGA-D1-A0ZO TCGA-D1-A0ZR TCGA-D1-A0ZS TCGA-D1-A0ZU TCGA-D1-A0ZV TCGA-D1-A101 
        2.27         0.56         4.83        19.00        11.51         1.74 
TCGA-D1-A103 TCGA-D1-A15W TCGA-D1-A15X TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A161 
       15.78        30.08        29.88         1.91         3.68        29.33 
TCGA-D1-A163 TCGA-D1-A165 TCGA-D1-A167 TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E 
       30.84         0.66        15.72        24.46        29.85        29.88 
TCGA-D1-A16G TCGA-D1-A16J TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16X 
       27.42        24.39        28.41         7.27         0.69         3.65 
TCGA-D1-A16Y TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A177 TCGA-D1-A17A 
       17.49        10.65         6.64        16.64        11.41         0.62 
TCGA-D1-A17B TCGA-D1-A17C TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17H TCGA-D1-A17L 
        6.97         0.03         5.26         1.28        14.93        15.09 
TCGA-D1-A17M TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17S TCGA-D1-A17T TCGA-D1-A17U 
       10.22         1.51         1.78        10.72         2.30        13.02 
TCGA-D1-A1NS TCGA-D1-A1NY TCGA-D1-A1NZ TCGA-D1-A1O5 TCGA-D1-A1O7 TCGA-D1-A1O8 
        1.41        13.02         0.26        12.39         1.05         3.95 
TCGA-D1-A2G0 TCGA-D1-A3DA TCGA-DI-A0WH TCGA-DI-A1BU TCGA-DI-A1BY TCGA-DI-A1C3 
        3.52         0.26        13.32        33.04        36.62        24.30 
TCGA-E6-A1LX TCGA-E6-A1M0 TCGA-E6-A2P8 TCGA-E6-A2P9 TCGA-EC-A1QX TCGA-EC-A24G 
       23.38        14.04         2.37         6.64         2.17         1.51 
TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22T TCGA-EO-A22U TCGA-EO-A22X TCGA-EY-A1G8 
       31.96        35.05        33.01        27.12        30.54        14.96 
TCGA-EY-A1GD TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GI TCGA-EY-A1GK TCGA-EY-A1GL 
        8.15        18.15        17.49        16.64        16.54        13.94 
TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A1GV TCGA-EY-A1H0 TCGA-EY-A215 TCGA-EY-A2OM 
        9.86         8.52         8.45        11.15        12.85         7.73 
TCGA-EY-A2OP TCGA-FI-A2CX TCGA-FI-A2D0 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2F4 
       16.54        40.01        33.99        14.01         8.98        28.93 

$subtype2
TCGA-A5-A0G2 TCGA-A5-A0GN TCGA-A5-A0GV TCGA-A5-A0R7 TCGA-A5-A2K3 TCGA-A5-A3LO 
      133.25        48.56        15.95         1.32        46.32         7.33 
TCGA-AJ-A2QK TCGA-AJ-A2QN TCGA-AJ-A3BI TCGA-AJ-A3I9 TCGA-AX-A05W TCGA-AX-A3FZ 
        0.39         2.01         2.01         1.28        68.32         0.20 
TCGA-B5-A0JT TCGA-B5-A11P TCGA-B5-A11V TCGA-B5-A1MU TCGA-BG-A0M2 TCGA-BG-A0MS 
       43.13        36.82         7.59        50.86        10.39        18.18 
TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A18C TCGA-BG-A221 TCGA-BG-A2AE TCGA-BS-A0TE 
        4.21         7.36         5.56         1.51         0.53         4.80 
TCGA-BS-A0TI TCGA-BS-A0UT TCGA-D1-A102 TCGA-D1-A169 TCGA-D1-A16V TCGA-D1-A17R 
       47.44        19.56         1.41        29.75         1.41        13.15 
TCGA-D1-A2G5 TCGA-EO-A1Y7 TCGA-EY-A1G7 TCGA-EY-A1GH TCGA-EY-A1GP TCGA-EY-A1GW 
       41.42         7.99         6.21        17.33        11.44         8.55 
TCGA-EY-A1GX 
        5.46 

$subtype3
TCGA-A5-A0G5 TCGA-A5-A0GJ TCGA-A5-A0GR TCGA-A5-A0R6 TCGA-A5-A1OG TCGA-A5-A2K2 
       25.97        47.57        25.64        12.13        11.44        91.00 
TCGA-A5-A2K4 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A2QM TCGA-AJ-A3BD TCGA-AJ-A3BF 
       28.64         7.56         1.02         1.02         0.49         1.12 
TCGA-AJ-A3EJ TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NF TCGA-AP-A052 TCGA-AP-A053 
        1.64         1.64         0.92         1.35        21.99         5.95 
TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A0L8 TCGA-AP-A0L9 
       39.39        44.84        27.32        21.01        48.79       113.19 
TCGA-AP-A0LF TCGA-AP-A0LI TCGA-AP-A1DQ TCGA-AW-A1PO TCGA-AX-A06B TCGA-AX-A0IU 
        3.39        85.55        38.93         0.56        53.88        28.54 
TCGA-AX-A0IW TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CF TCGA-AX-A1CP 
       37.74        16.93        13.55        20.28        76.83        36.39 
TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2H5 TCGA-AX-A2H8 TCGA-AX-A2HF 
       11.08         4.77        30.08        71.24        61.18        16.08 
TCGA-AX-A2HK TCGA-AX-A2IO TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-AX-A3G3 
        2.96        38.66         0.33         0.13        20.52         0.03 
TCGA-AX-A3G4 TCGA-AX-A3G7 TCGA-AX-A3GI TCGA-B5-A0JN TCGA-B5-A0K3 TCGA-B5-A0K8 
        0.13         0.23         0.13        67.99        23.01        17.82 
TCGA-B5-A0KB TCGA-B5-A11I TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-BG-A0M6 TCGA-BG-A0M8 
        4.08        67.00        11.87        12.79         7.92        22.68 
TCGA-BG-A0YV TCGA-BK-A0CC TCGA-BK-A139 TCGA-BK-A26L TCGA-BS-A0U9 TCGA-BS-A0V8 
        6.12         6.94         7.86         7.66        57.50        49.55 
TCGA-D1-A0ZP TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A16I TCGA-D1-A16N TCGA-D1-A16S 
       22.68        12.39        33.27        11.47        21.04         7.82 
TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A1NU TCGA-D1-A1NW TCGA-D1-A1NX TCGA-D1-A1O0 
        6.77        14.10        10.22         0.72        13.12         0.07 
TCGA-D1-A2G7 TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QU 
       44.88         4.27         4.11        31.00         9.37        31.10 
TCGA-DI-A2QY TCGA-E6-A1LZ TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A2CG TCGA-EO-A2CH 
       91.96        42.38        10.92        10.78        22.09        17.49 
TCGA-EY-A1GC TCGA-EY-A1GJ TCGA-EY-A1GM TCGA-EY-A1GR TCGA-EY-A1GS TCGA-EY-A210 
        4.54        16.77         6.87        11.31         9.34         5.42 
TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A2ON TCGA-EY-A2OQ TCGA-FI-A2CY TCGA-FI-A2D2 
        3.58         8.28         5.62         9.63        34.98        36.00 
TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A2F9 
       84.07        59.01         9.07        29.03        25.02        26.01 
TCGA-H5-A2HR 
        1.74 

$subtype4
TCGA-AJ-A3NG TCGA-AP-A0LO TCGA-AX-A2H7 TCGA-B5-A0K4 TCGA-B5-A11E TCGA-B5-A11R 
        1.71        33.40        33.53        15.32         8.71        27.52 
TCGA-B5-A11S TCGA-BG-A0M4 TCGA-BK-A0C9 TCGA-BS-A0UV TCGA-D1-A168 TCGA-D1-A2G6 
       21.37        15.78         9.50         4.90        30.02         8.48 
TCGA-DI-A2QT TCGA-EO-A22Y TCGA-EY-A1GQ TCGA-FI-A2D4 
       12.39        23.05        11.18         7.96 

$subtype5
TCGA-AP-A1DO TCGA-BG-A0MT TCGA-BG-A0W1 TCGA-D1-A0ZQ TCGA-EY-A1GO TCGA-EY-A2OO 
       31.30         7.89        29.82         0.26        11.84        25.45 

subtype1 subtype2 subtype3 subtype4 subtype5 
    0.03     0.20     0.03     1.71     0.26 
subtype1 subtype2 subtype3 subtype4 subtype5 
  187.07   133.25   113.19    33.53    31.30 
subtype1 subtype2 subtype3 subtype4 subtype5 
  17.340    7.990   13.120   13.855   18.645 
[1] "0.0 - 187.1 (17.3)" "0.2 - 133.2 (8.0)"  "0.0 - 113.2 (13.1)"
[4] "1.7 - 33.5 (13.9)"  "0.3 - 31.3 (18.6)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype5" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype4"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[229] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype5" "subtype1" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype5" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype5"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[337] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[343] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[361] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[367] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[379] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype3"
[391] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[403] "subtype3" "subtype5" "subtype2" "subtype4" "subtype3" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[415] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[421] "subtype5" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype5" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype4"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[229] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype5" "subtype1" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype5" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype5"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[337] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[343] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[361] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[367] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[379] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype3"
[391] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[403] "subtype3" "subtype5" "subtype2" "subtype4" "subtype3" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[415] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[421] "subtype5" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [61] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype1" "subtype5" "subtype1" "subtype3" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[151] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype4"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype4"
[193] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[199] "subtype1" "subtype1" "subtype2" "subtype1" "subtype4" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[229] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype5" "subtype1" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype5" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype5"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[301] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[319] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[337] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[343] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[361] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[367] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[379] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[385] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype3"
[391] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[403] "subtype3" "subtype5" "subtype2" "subtype4" "subtype3" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[415] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[421] "subtype5" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[433] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
D3V2, continuous
D3V3, multiclass
D3V4, binary
          cls
clus         0   1
  subtype1  94 179
  subtype2   6  31
  subtype3  27  84
  subtype4   4  12
  subtype5   2   4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   94  179
  subtype2    6   31
  subtype3   27   84
  subtype4    4   12
  subtype5    2    4

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2        0   1
  subtype1  98  18
  subtype2  69   4
  subtype3 131   9
subtype1 subtype2 subtype3 
     116       73      140 
subtype1 subtype2 subtype3 
      18        4        9 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0GR TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A2K2 TCGA-A5-A2K3 
      106.88        25.64         7.92        11.44        91.00        46.32 
TCGA-A5-A2K4 TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A2QM TCGA-AJ-A3BF TCGA-AJ-A3EJ 
       28.64         7.56         1.02         1.02         1.12         1.64 
TCGA-AJ-A3EL TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NE TCGA-AJ-A3NF TCGA-AJ-A3OJ 
        2.14         1.64         0.92         2.56         1.35         1.94 
TCGA-AP-A059 TCGA-AP-A0LF TCGA-AP-A0LM TCGA-AP-A1DK TCGA-AP-A1E3 TCGA-AP-A1E4 
        8.22         3.39        27.12        54.25        17.19         8.78 
TCGA-AX-A06D TCGA-AX-A0IZ TCGA-AX-A1C5 TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA 
       12.26        43.82        19.20        16.93        13.55        20.28 
TCGA-AX-A1CC TCGA-AX-A1CF TCGA-AX-A1CN TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 
       12.43        76.83        25.12        11.08         4.77        30.08 
TCGA-AX-A2H5 TCGA-AX-A2H8 TCGA-AX-A2HF TCGA-AX-A2HG TCGA-AX-A2HK TCGA-AX-A2IN 
       71.24        61.18        16.08        21.70         2.96        31.10 
TCGA-AX-A3FT TCGA-AX-A3FZ TCGA-AX-A3G3 TCGA-AX-A3G7 TCGA-AX-A3G8 TCGA-AX-A3GI 
        0.10         0.20         0.03         0.23         1.18         0.13 
TCGA-B5-A0K8 TCGA-B5-A0KB TCGA-B5-A11I TCGA-B5-A11O TCGA-B5-A11X TCGA-B5-A1MR 
       17.82         4.08        67.00        33.99        11.08       187.07 
TCGA-B5-A1MU TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-BG-A0YV TCGA-BG-A18C TCGA-BG-A220 
       50.86        11.87        12.79         6.12         5.56         7.23 
TCGA-BG-A221 TCGA-BG-A2AE TCGA-BK-A139 TCGA-BK-A26L TCGA-BS-A0U9 TCGA-BS-A0V8 
        1.51         0.53         7.86         7.66        57.50        49.55 
TCGA-D1-A0ZP TCGA-D1-A0ZS TCGA-D1-A15V TCGA-D1-A15X TCGA-D1-A168 TCGA-D1-A16G 
       22.68         4.83        33.27        29.88        30.02        27.42 
TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16S TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A1NU 
       11.47        24.39         7.82         6.77        14.10        10.22 
TCGA-D1-A1NW TCGA-D1-A1NX TCGA-D1-A1O8 TCGA-D1-A2G0 TCGA-D1-A3DH TCGA-DI-A1BU 
        0.72        13.12         3.95         3.52         4.11        33.04 
TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QT TCGA-E6-A1LZ TCGA-E6-A2P8 TCGA-EC-A1QX 
       31.00         9.37        12.39        42.38         2.37         2.17 
TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22T TCGA-EO-A22X TCGA-EY-A1G7 TCGA-EY-A1GC 
       10.92        10.78        33.01        30.54         6.21         4.54 
TCGA-EY-A1GJ TCGA-EY-A1GM TCGA-EY-A1GO TCGA-EY-A1GP TCGA-EY-A1GS TCGA-EY-A1GV 
       16.77         6.87        11.84        11.44         9.34         8.45 
TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A2ON TCGA-EY-A2OO TCGA-FI-A2CX TCGA-FI-A2CY 
        3.58         8.28         5.62        25.45        40.01        34.98 
TCGA-FI-A2D2 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY 
       36.00         8.98        84.07        59.01         9.07        29.03 
TCGA-FI-A2F8 TCGA-H5-A2HR 
       25.02         1.74 

$subtype2
TCGA-A5-A0GG TCGA-A5-A0GQ TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-A5-A3LO TCGA-AJ-A2QK 
       82.72        38.37         9.60         7.99         7.33         0.39 
TCGA-AJ-A3BD TCGA-AJ-A3OK TCGA-AP-A1DQ TCGA-AW-A1PO TCGA-AX-A06L TCGA-AX-A0J0 
        0.49         4.67        38.93         0.56        48.62        40.08 
TCGA-AX-A1C9 TCGA-AX-A1CJ TCGA-AX-A1CP TCGA-AX-A2H7 TCGA-AX-A2HH TCGA-AX-A2IO 
       15.25        54.08        36.39        33.53        17.72        38.66 
TCGA-AX-A3G4 TCGA-B5-A11M TCGA-B5-A11P TCGA-B5-A11R TCGA-B5-A11S TCGA-B5-A11U 
        0.13        36.72        36.82        27.52        21.37         8.91 
TCGA-B5-A11Y TCGA-B5-A121 TCGA-BG-A0VV TCGA-BG-A0VX TCGA-BG-A0W1 TCGA-BG-A0W2 
       10.36         8.52         8.55        16.11        29.82        37.84 
TCGA-BG-A0YU TCGA-BG-A186 TCGA-BG-A18A TCGA-BK-A0CA TCGA-BS-A0T9 TCGA-BS-A0UL 
        9.17         7.56         8.28        12.20        46.95         1.18 
TCGA-BS-A0V7 TCGA-BS-A0WQ TCGA-D1-A0ZR TCGA-D1-A0ZV TCGA-D1-A0ZZ TCGA-D1-A15W 
       46.98        39.68         0.56        11.51        12.39        30.08 
TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16O 
       32.09         0.66        24.46        29.85        29.88        28.41 
TCGA-D1-A16Q TCGA-D1-A16R TCGA-D1-A16X TCGA-D1-A16Y TCGA-D1-A17B TCGA-D1-A17C 
        7.27         0.69         3.65        17.49         6.97         0.03 
TCGA-D1-A17L TCGA-D1-A17N TCGA-D1-A17S TCGA-D1-A1O5 TCGA-D1-A2G7 TCGA-D1-A3DG 
       15.09         1.51        10.72        12.39        44.88         4.27 
TCGA-DI-A0WH TCGA-DI-A1BY TCGA-DI-A1C3 TCGA-DI-A2QU TCGA-DI-A2QY TCGA-EO-A2CG 
       13.32        36.62        24.30        31.10        91.96        22.09 
TCGA-EO-A2CH TCGA-EY-A1GE TCGA-EY-A1GR TCGA-EY-A210 TCGA-EY-A2OQ TCGA-FI-A2D0 
       17.49        18.15        11.31         5.42         9.63        33.99 
TCGA-FI-A2F9 
       26.01 

$subtype3
TCGA-A5-A0VO TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-AJ-A23O TCGA-AJ-A2QL TCGA-AJ-A2QN 
        4.21         5.29         5.13         1.97         1.61         2.01 
TCGA-AJ-A2QO TCGA-AJ-A3BG TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3EK TCGA-AJ-A3I9 
        2.99         1.02         2.01         1.68         2.10         1.28 
TCGA-AJ-A3NC TCGA-AJ-A3NG TCGA-AP-A05O TCGA-AP-A0LS TCGA-AP-A1DH TCGA-AP-A1DM 
        6.90         1.71        12.20        54.84        59.70        43.69 
TCGA-AP-A1DO TCGA-AP-A1DP TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 
       31.30        35.54        37.18         6.71        22.72        10.42 
TCGA-AX-A06H TCGA-AX-A0IS TCGA-AX-A1C4 TCGA-AX-A1CE TCGA-AX-A1CI TCGA-AX-A1CK 
       27.39        35.01        13.28        20.05        72.56        67.46 
TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HD TCGA-AX-A2HJ TCGA-AX-A3FS TCGA-AX-A3FW 
       68.71        33.40        40.50        27.32         0.23         0.33 
TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-AX-A3G9 TCGA-AX-A3GB TCGA-B5-A0JT TCGA-B5-A0JU 
        0.13        20.52         8.35        14.47        43.13        48.76 
TCGA-B5-A0JX TCGA-B5-A11E TCGA-B5-A11F TCGA-B5-A11G TCGA-B5-A11H TCGA-B5-A11J 
       44.71         8.71       173.56       101.13        76.18        42.44 
TCGA-B5-A11L TCGA-B5-A11N TCGA-B5-A11Q TCGA-B5-A11V TCGA-B5-A11W TCGA-B5-A11Z 
       45.90        37.71        23.08         7.59        11.15         9.57 
TCGA-B5-A1MV TCGA-B5-A1MW TCGA-B5-A1MX TCGA-B5-A1MZ TCGA-B5-A3FC TCGA-BG-A0MA 
       12.49         7.23         5.72        15.29        62.14        10.72 
TCGA-BG-A0MH TCGA-BG-A0VT TCGA-BG-A0VW TCGA-BG-A0VZ TCGA-BG-A187 TCGA-BG-A18B 
       44.09         7.36         4.31        28.54         7.59         5.10 
TCGA-BG-A222 TCGA-BG-A2L7 TCGA-BK-A13B TCGA-BK-A13C TCGA-BS-A0U5 TCGA-BS-A0UA 
        0.46         5.82        19.00         6.64        72.46        83.51 
TCGA-BS-A0V4 TCGA-BS-A0V6 TCGA-BS-A0VI TCGA-D1-A0ZN TCGA-D1-A0ZO TCGA-D1-A0ZQ 
        1.02        54.25        54.61        16.83         2.27         0.26 
TCGA-D1-A0ZU TCGA-D1-A101 TCGA-D1-A102 TCGA-D1-A103 TCGA-D1-A15Z TCGA-D1-A160 
       19.00         1.74         1.41        15.78         1.91         3.68 
TCGA-D1-A161 TCGA-D1-A163 TCGA-D1-A167 TCGA-D1-A169 TCGA-D1-A16F TCGA-D1-A16N 
       29.33        30.84        15.72        29.75         2.63        21.04 
TCGA-D1-A16V TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A177 TCGA-D1-A17A 
        1.41        10.65         6.64        16.64        11.41         0.62 
TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17H TCGA-D1-A17M TCGA-D1-A17Q TCGA-D1-A17R 
        5.26         1.28        14.93        10.22         1.78        13.15 
TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NY TCGA-D1-A1NZ TCGA-D1-A1O0 
        2.30        13.02         1.41        13.02         0.26         0.07 
TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-D1-A2G6 TCGA-D1-A3DA TCGA-E6-A1LX TCGA-E6-A1M0 
        1.05        41.42         8.48         0.26        23.38        14.04 
TCGA-E6-A2P9 TCGA-EC-A24G TCGA-EO-A1Y7 TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22U 
        6.64         1.51         7.99        31.96        35.05        27.12 
TCGA-EO-A22Y TCGA-EY-A1G8 TCGA-EY-A1GD TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI 
       23.05        14.96         8.15        17.49        17.33        16.64 
TCGA-EY-A1GK TCGA-EY-A1GL TCGA-EY-A1GQ TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A1GW 
       16.54        13.94        11.18         9.86         8.52         8.55 
TCGA-EY-A1GX TCGA-EY-A1H0 TCGA-EY-A215 TCGA-EY-A2OM TCGA-EY-A2OP TCGA-FI-A2D4 
        5.46        11.15        12.85         7.73        16.54         7.96 
TCGA-FI-A2D5 TCGA-FI-A2F4 
       14.01        28.93 

subtype1 subtype2 subtype3 
    0.03     0.03     0.07 
subtype1 subtype2 subtype3 
  187.07    91.96   173.56 
subtype1 subtype2 subtype3 
  11.440   16.110   11.805 
[1] "0.0 - 187.1 (11.4)" "0.0 - 92.0 (16.1)"  "0.1 - 173.6 (11.8)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[265] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[271] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[265] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[271] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [67] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[163] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[205] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[217] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[247] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[265] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[271] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[295] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[319] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[325] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
D4V2, continuous
D4V3, multiclass
D4V4, binary
          cls
clus         0   1
  subtype1  32  87
  subtype2  12  61
  subtype3  37 105
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   87
  subtype2   12   61
  subtype3   37  105
     clus
vv    subtype1 subtype2 subtype3
  NO        32       12       37
  YES       87       61      105

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 37  4
  subtype2 36  2
  subtype3 39  2
  subtype4 14  2
  subtype5 37  1
  subtype6 24  2
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
      41       38       41       16       38       26 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       4        2        2        2        1        2 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0GE TCGA-A5-A0GQ TCGA-A5-A0GR TCGA-A5-A0R8 TCGA-A5-A0RA 
      106.88        89.33        38.37        25.64         4.11        18.25 
TCGA-A5-A0VP TCGA-AP-A059 TCGA-AP-A05J TCGA-AP-A0LF TCGA-AP-A0LI TCGA-AP-A0LM 
       30.48         8.22        21.01         3.39        85.55        27.12 
TCGA-AX-A064 TCGA-AX-A06D TCGA-AX-A06L TCGA-B5-A0K2 TCGA-B5-A0K4 TCGA-B5-A11I 
       34.98        12.26        48.62        22.42        15.32        67.00 
TCGA-B5-A11U TCGA-B5-A11Y TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0MG TCGA-BK-A0CA 
        8.91        10.36         7.79        10.39        29.46        12.20 
TCGA-BK-A0CC TCGA-BK-A139 TCGA-BS-A0T9 TCGA-BS-A0U9 TCGA-D1-A0ZR TCGA-D1-A101 
        6.94         7.86        46.95        57.50         0.56         1.74 
TCGA-D1-A15X TCGA-D1-A163 TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16G 
       29.88        30.84        29.85        29.88         2.63        27.42 
TCGA-D1-A16J TCGA-D1-A16X TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17N 
       24.39         3.65         6.97         5.26         1.51 

$subtype2
TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GH TCGA-A5-A0GV TCGA-A5-A0GW 
      133.25        35.47        25.97        54.94        15.95        12.66 
TCGA-A5-A0R6 TCGA-A5-A0R7 TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 
       12.13         1.32        21.99         5.95        23.31        66.61 
TCGA-AP-A05A TCGA-AP-A05D TCGA-AP-A0LD TCGA-AP-A0LE TCGA-AP-A0LT TCGA-AX-A05Z 
       39.39        44.84        95.54        98.17        38.96        46.45 
TCGA-AX-A06B TCGA-AX-A06F TCGA-AX-A0J0 TCGA-B5-A0JN TCGA-B5-A0JY TCGA-B5-A0K3 
       53.88        51.09        40.08        67.99        26.99        23.01 
TCGA-B5-A11E TCGA-B5-A11H TCGA-B5-A11X TCGA-BG-A0RY TCGA-BG-A0YV TCGA-BG-A18C 
        8.71        76.18        11.08         4.21         6.12         5.56 
TCGA-BS-A0TA TCGA-BS-A0TJ TCGA-D1-A168 TCGA-D1-A16N TCGA-D1-A16S TCGA-D1-A177 
       23.47        49.78        30.02        21.04         7.82        11.41 
TCGA-D1-A179 TCGA-D1-A17K 
        6.77        14.10 

$subtype3
TCGA-A5-A0G9 TCGA-A5-A0GB TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-AX-A05W TCGA-AX-A063 
       71.18         9.04        47.57        47.61        68.32        66.54 
TCGA-AX-A06J TCGA-AX-A0J1 TCGA-B5-A0JZ TCGA-B5-A0K1 TCGA-B5-A11F TCGA-B5-A11N 
       30.02        65.88        22.65        24.53       173.56        37.71 
TCGA-B5-A11Q TCGA-B5-A11S TCGA-B5-A11W TCGA-BG-A0LX TCGA-BG-A0M7 TCGA-BG-A0M9 
       23.08        21.37        11.15         8.28        22.95        25.15 
TCGA-BG-A0MC TCGA-BG-A0MH TCGA-BG-A0MS TCGA-BG-A0MT TCGA-BG-A0W1 TCGA-BG-A0YU 
       27.19        44.09        18.18         7.89        29.82         9.17 
TCGA-BG-A186 TCGA-BG-A18A TCGA-BG-A18B TCGA-BK-A0CB TCGA-BK-A13C TCGA-BS-A0U7 
        7.56         8.28         5.10         6.18         6.64        30.71 
TCGA-BS-A0U8 TCGA-D1-A15W TCGA-D1-A160 TCGA-D1-A167 TCGA-D1-A16O TCGA-D1-A175 
       85.68        30.08         3.68        15.72        28.41         6.64 
TCGA-D1-A17H TCGA-D1-A17L TCGA-D1-A17M TCGA-D1-A17Q TCGA-D1-A17R 
       14.93        15.09        10.22         1.78        13.15 

$subtype4
TCGA-A5-A0GA TCGA-A5-A0GD TCGA-A5-A0GG TCGA-AP-A0LP TCGA-AX-A05S TCGA-AX-A05Y 
       17.85         3.19        82.72        61.64        13.58        72.03 
TCGA-AX-A060 TCGA-BG-A0M4 TCGA-BK-A0C9 TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0TI 
       35.34        15.78         9.50        74.30        65.82        47.44 
TCGA-BS-A0UF TCGA-D1-A16V TCGA-D1-A16Y TCGA-D1-A176 
       60.59         1.41        17.49        16.64 

$subtype5
TCGA-A5-A0GI TCGA-A5-A0GN TCGA-A5-A0GU TCGA-A5-A0R9 TCGA-A5-A0VQ TCGA-AP-A051 
       57.53        48.56        16.27         9.67         5.82        83.67 
TCGA-AP-A05N TCGA-AP-A05O TCGA-AP-A05P TCGA-AP-A0LG TCGA-AP-A0LJ TCGA-AP-A0LL 
        7.86        12.20         8.55        63.16        31.73        70.39 
TCGA-AP-A0LN TCGA-AP-A0LV TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A062 TCGA-AX-A0IS 
       65.49        12.66        19.82        29.65        45.96        35.01 
TCGA-B5-A0K0 TCGA-B5-A0K7 TCGA-B5-A11G TCGA-B5-A11V TCGA-B5-A11Z TCGA-B5-A121 
       22.32        12.23       101.13         7.59         9.57         8.52 
TCGA-BG-A0M3 TCGA-BG-A0MU TCGA-BG-A0VT TCGA-BG-A0VV TCGA-BS-A0UJ TCGA-BS-A0V7 
       24.39         7.59         7.36         8.55         0.89        46.98 
TCGA-D1-A15Z TCGA-D1-A165 TCGA-D1-A16B TCGA-D1-A16Q TCGA-D1-A17C TCGA-D1-A17S 
        1.91         0.66        24.46         7.27         0.03        10.72 
TCGA-D1-A17T TCGA-DI-A0WH 
        2.30        13.32 

$subtype6
TCGA-A5-A0GX TCGA-A5-A0VO TCGA-AP-A05H TCGA-AP-A0LH TCGA-AX-A0IW TCGA-AX-A0IZ 
       30.38         4.21        27.32        36.36        37.74        43.82 
TCGA-B5-A0JT TCGA-B5-A0K9 TCGA-BG-A0LW TCGA-BG-A0M6 TCGA-BG-A0M8 TCGA-BG-A187 
       43.13         5.46         6.38         7.92        22.68         7.59 
TCGA-BS-A0TG TCGA-D1-A0ZP TCGA-D1-A0ZU TCGA-D1-A0ZZ TCGA-D1-A102 TCGA-D1-A103 
       66.87        22.68        19.00        12.39         1.41        15.78 
TCGA-D1-A15V TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A169 TCGA-D1-A16I TCGA-D1-A16R 
       33.27        29.33        32.09        29.75        11.47         0.69 
TCGA-D1-A17F TCGA-D1-A17U 
        1.28        13.02 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    0.56     1.32     1.78     1.41     0.03     0.69 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  106.88   133.25   173.56    82.72   101.13    66.87 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
  21.010   24.720   22.650   26.595   12.445   20.840 
[1] "0.6 - 106.9 (21.0)" "1.3 - 133.2 (24.7)" "1.8 - 173.6 (22.6)"
[4] "1.4 - 82.7 (26.6)"  "0.0 - 101.1 (12.4)" "0.7 - 66.9 (20.8)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype1" "subtype4" "subtype2" "subtype5"
 [13] "subtype3" "subtype3" "subtype5" "subtype1" "subtype1" "subtype5"
 [19] "subtype2" "subtype2" "subtype6" "subtype2" "subtype2" "subtype1"
 [25] "subtype5" "subtype1" "subtype6" "subtype1" "subtype5" "subtype5"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype6" "subtype1" "subtype5" "subtype5" "subtype5"
 [43] "subtype2" "subtype2" "subtype1" "subtype5" "subtype6" "subtype1"
 [49] "subtype5" "subtype5" "subtype1" "subtype5" "subtype4" "subtype2"
 [55] "subtype5" "subtype4" "subtype5" "subtype5" "subtype3" "subtype4"
 [61] "subtype2" "subtype4" "subtype5" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype5" "subtype6"
 [73] "subtype6" "subtype2" "subtype3" "subtype2" "subtype6" "subtype2"
 [79] "subtype3" "subtype5" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype5" "subtype6" "subtype2" "subtype3" "subtype5" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype5"
 [97] "subtype3" "subtype2" "subtype1" "subtype5" "subtype5" "subtype6"
[103] "subtype3" "subtype1" "subtype1" "subtype5" "subtype4" "subtype6"
[109] "subtype3" "subtype6" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype5" "subtype2" "subtype5" "subtype5"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype6" "subtype3"
[127] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
[139] "subtype6" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype4" "subtype5" "subtype5" "subtype6" "subtype1" "subtype6"
[151] "subtype6" "subtype1" "subtype6" "subtype6" "subtype6" "subtype3"
[157] "subtype1" "subtype5" "subtype3" "subtype6" "subtype6" "subtype1"
[163] "subtype5" "subtype3" "subtype2" "subtype6" "subtype5" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype6" "subtype1" "subtype2"
[175] "subtype3" "subtype5" "subtype6" "subtype2" "subtype4" "subtype1"
[181] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[187] "subtype5" "subtype1" "subtype6" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype5" "subtype5"
[199] "subtype6" "subtype5"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype1" "subtype4" "subtype2" "subtype5"
 [13] "subtype3" "subtype3" "subtype5" "subtype1" "subtype1" "subtype5"
 [19] "subtype2" "subtype2" "subtype6" "subtype2" "subtype2" "subtype1"
 [25] "subtype5" "subtype1" "subtype6" "subtype1" "subtype5" "subtype5"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype6" "subtype1" "subtype5" "subtype5" "subtype5"
 [43] "subtype2" "subtype2" "subtype1" "subtype5" "subtype6" "subtype1"
 [49] "subtype5" "subtype5" "subtype1" "subtype5" "subtype4" "subtype2"
 [55] "subtype5" "subtype4" "subtype5" "subtype5" "subtype3" "subtype4"
 [61] "subtype2" "subtype4" "subtype5" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype5" "subtype6"
 [73] "subtype6" "subtype2" "subtype3" "subtype2" "subtype6" "subtype2"
 [79] "subtype3" "subtype5" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype5" "subtype6" "subtype2" "subtype3" "subtype5" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype5"
 [97] "subtype3" "subtype2" "subtype1" "subtype5" "subtype5" "subtype6"
[103] "subtype3" "subtype1" "subtype1" "subtype5" "subtype4" "subtype6"
[109] "subtype3" "subtype6" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype5" "subtype2" "subtype5" "subtype5"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype6" "subtype3"
[127] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
[139] "subtype6" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype4" "subtype5" "subtype5" "subtype6" "subtype1" "subtype6"
[151] "subtype6" "subtype1" "subtype6" "subtype6" "subtype6" "subtype3"
[157] "subtype1" "subtype5" "subtype3" "subtype6" "subtype6" "subtype1"
[163] "subtype5" "subtype3" "subtype2" "subtype6" "subtype5" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype6" "subtype1" "subtype2"
[175] "subtype3" "subtype5" "subtype6" "subtype2" "subtype4" "subtype1"
[181] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[187] "subtype5" "subtype1" "subtype6" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype5" "subtype5"
[199] "subtype6" "subtype5"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype4"
  [7] "subtype3" "subtype4" "subtype1" "subtype4" "subtype2" "subtype5"
 [13] "subtype3" "subtype3" "subtype5" "subtype1" "subtype1" "subtype5"
 [19] "subtype2" "subtype2" "subtype6" "subtype2" "subtype2" "subtype1"
 [25] "subtype5" "subtype1" "subtype6" "subtype1" "subtype5" "subtype5"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype6" "subtype1" "subtype5" "subtype5" "subtype5"
 [43] "subtype2" "subtype2" "subtype1" "subtype5" "subtype6" "subtype1"
 [49] "subtype5" "subtype5" "subtype1" "subtype5" "subtype4" "subtype2"
 [55] "subtype5" "subtype4" "subtype5" "subtype5" "subtype3" "subtype4"
 [61] "subtype2" "subtype4" "subtype5" "subtype3" "subtype1" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype5" "subtype6"
 [73] "subtype6" "subtype2" "subtype3" "subtype2" "subtype6" "subtype2"
 [79] "subtype3" "subtype5" "subtype3" "subtype1" "subtype2" "subtype1"
 [85] "subtype5" "subtype6" "subtype2" "subtype3" "subtype5" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype5"
 [97] "subtype3" "subtype2" "subtype1" "subtype5" "subtype5" "subtype6"
[103] "subtype3" "subtype1" "subtype1" "subtype5" "subtype4" "subtype6"
[109] "subtype3" "subtype6" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype3" "subtype5" "subtype2" "subtype5" "subtype5"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype6" "subtype3"
[127] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype2" "subtype4" "subtype4"
[139] "subtype6" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[145] "subtype4" "subtype5" "subtype5" "subtype6" "subtype1" "subtype6"
[151] "subtype6" "subtype1" "subtype6" "subtype6" "subtype6" "subtype3"
[157] "subtype1" "subtype5" "subtype3" "subtype6" "subtype6" "subtype1"
[163] "subtype5" "subtype3" "subtype2" "subtype6" "subtype5" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype6" "subtype1" "subtype2"
[175] "subtype3" "subtype5" "subtype6" "subtype2" "subtype4" "subtype1"
[181] "subtype4" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
[187] "subtype5" "subtype1" "subtype6" "subtype3" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype5" "subtype5"
[199] "subtype6" "subtype5"
D5V2, continuous
D5V3, multiclass
D5V4, binary
          cls
clus        0  1
  subtype1 20 21
  subtype2 18 20
  subtype3 13 28
  subtype4  4 12
  subtype5 13 25
  subtype6 12 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   21
  subtype2   18   20
  subtype3   13   28
  subtype4    4   12
  subtype5   13   25
  subtype6   12   14

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1  7  0
  subtype2 31  2
  subtype3 37  2
  subtype4 35  4
  subtype5 53  3
  subtype6 24  2
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       7       33       39       39       56       26 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
       0        2        2        4        3        2 
$subtype1
TCGA-A5-A0GR TCGA-AP-A0LL TCGA-B5-A11Z TCGA-BG-A0M2 TCGA-BG-A0W1 TCGA-BG-A0YU 
       25.64        70.39         9.57        10.39        29.82         9.17 
TCGA-D1-A17L 
       15.09 

$subtype2
TCGA-A5-A0GE TCGA-A5-A0GQ TCGA-A5-A0R8 TCGA-A5-A0VP TCGA-AX-A064 TCGA-AX-A06L 
       89.33        38.37         4.11        30.48        34.98        48.62 
TCGA-B5-A0K7 TCGA-B5-A11I TCGA-B5-A11Y TCGA-BG-A0M0 TCGA-BG-A0MG TCGA-BK-A0CA 
       12.23        67.00        10.36         7.79        29.46        12.20 
TCGA-BK-A0CC TCGA-BK-A139 TCGA-BS-A0T9 TCGA-D1-A0ZR TCGA-D1-A101 TCGA-D1-A15X 
        6.94         7.86        46.95         0.56         1.74        29.88 
TCGA-D1-A163 TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16G TCGA-D1-A16J 
       30.84        29.85        29.88         2.63        27.42        24.39 
TCGA-D1-A16Q TCGA-D1-A16X TCGA-D1-A16Y TCGA-D1-A176 TCGA-D1-A17B TCGA-D1-A17C 
        7.27         3.65        17.49        16.64         6.97         0.03 
TCGA-D1-A17N TCGA-D1-A17S TCGA-D1-A17T 
        1.51        10.72         2.30 

$subtype3
TCGA-A5-A0GU TCGA-A5-A0R6 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VQ TCGA-AP-A051 
       16.27        12.13         9.67        18.25         5.82        83.67 
TCGA-AP-A05D TCGA-AP-A05N TCGA-AP-A05O TCGA-AP-A05P TCGA-AP-A0LE TCGA-AP-A0LG 
       44.84         7.86        12.20         8.55        98.17        63.16 
TCGA-AP-A0LH TCGA-AP-A0LJ TCGA-AP-A0LN TCGA-AP-A0LV TCGA-AX-A05T TCGA-AX-A05U 
       36.36        31.73        65.49        12.66        19.82        29.65 
TCGA-AX-A05Z TCGA-AX-A062 TCGA-AX-A06B TCGA-AX-A0IS TCGA-B5-A0K0 TCGA-B5-A0K2 
       46.45        45.96        53.88        35.01        22.32        22.42 
TCGA-B5-A0K4 TCGA-B5-A11N TCGA-B5-A11Q TCGA-B5-A11V TCGA-BG-A0MT TCGA-BG-A0RY 
       15.32        37.71        23.08         7.59         7.89         4.21 
TCGA-BG-A0VT TCGA-BG-A187 TCGA-BK-A0CB TCGA-BS-A0UJ TCGA-D1-A165 TCGA-D1-A16B 
        7.36         7.59         6.18         0.89         0.66        24.46 
TCGA-D1-A17K TCGA-D1-A17R TCGA-DI-A0WH 
       14.10        13.15        13.32 

$subtype4
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GH TCGA-A5-A0GV 
      106.88       133.25        35.47        25.97        54.94        15.95 
TCGA-A5-A0GW TCGA-A5-A0R7 TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 
       12.66         1.32        21.99         5.95        23.31        66.61 
TCGA-AP-A059 TCGA-AP-A05A TCGA-AP-A05J TCGA-AP-A0LD TCGA-AP-A0LF TCGA-AP-A0LI 
        8.22        39.39        21.01        95.54         3.39        85.55 
TCGA-AP-A0LM TCGA-AP-A0LT TCGA-AX-A06D TCGA-AX-A06F TCGA-AX-A0J0 TCGA-B5-A0JN 
       27.12        38.96        12.26        51.09        40.08        67.99 
TCGA-B5-A0JY TCGA-B5-A0K3 TCGA-B5-A11E TCGA-B5-A11H TCGA-B5-A11U TCGA-B5-A11X 
       26.99        23.01         8.71        76.18         8.91        11.08 
TCGA-BG-A0M6 TCGA-BG-A0YV TCGA-BG-A18C TCGA-BS-A0TA TCGA-BS-A0U9 TCGA-D1-A168 
        7.92         6.12         5.56        23.47        57.50        30.02 
TCGA-D1-A16S TCGA-D1-A177 TCGA-D1-A179 
        7.82        11.41         6.77 

$subtype5
TCGA-A5-A0G9 TCGA-A5-A0GA TCGA-A5-A0GB TCGA-A5-A0GD TCGA-A5-A0GG TCGA-A5-A0GI 
       71.18        17.85         9.04         3.19        82.72        57.53 
TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-A5-A0GN TCGA-AP-A0LP TCGA-AX-A05S TCGA-AX-A05W 
       47.57        47.61        48.56        61.64        13.58        68.32 
TCGA-AX-A05Y TCGA-AX-A060 TCGA-AX-A063 TCGA-AX-A06J TCGA-AX-A0J1 TCGA-B5-A0JZ 
       72.03        35.34        66.54        30.02        65.88        22.65 
TCGA-B5-A0K1 TCGA-B5-A11F TCGA-B5-A11S TCGA-B5-A11W TCGA-BG-A0LX TCGA-BG-A0M3 
       24.53       173.56        21.37        11.15         8.28        24.39 
TCGA-BG-A0M4 TCGA-BG-A0M7 TCGA-BG-A0M9 TCGA-BG-A0MC TCGA-BG-A0MH TCGA-BG-A0MS 
       15.78        22.95        25.15        27.19        44.09        18.18 
TCGA-BG-A0MU TCGA-BG-A186 TCGA-BG-A18B TCGA-BK-A0C9 TCGA-BK-A13C TCGA-BS-A0TC 
        7.59         7.56         5.10         9.50         6.64        74.30 
TCGA-BS-A0TI TCGA-BS-A0TJ TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UF TCGA-D1-A0ZZ 
       47.44        49.78        30.71        85.68        60.59        12.39 
TCGA-D1-A102 TCGA-D1-A15W TCGA-D1-A160 TCGA-D1-A167 TCGA-D1-A169 TCGA-D1-A16N 
        1.41        30.08         3.68        15.72        29.75        21.04 
TCGA-D1-A16O TCGA-D1-A16V TCGA-D1-A175 TCGA-D1-A17D TCGA-D1-A17H TCGA-D1-A17M 
       28.41         1.41         6.64         5.26        14.93        10.22 
TCGA-D1-A17Q TCGA-D1-A17U 
        1.78        13.02 

$subtype6
TCGA-A5-A0GX TCGA-A5-A0VO TCGA-AP-A05H TCGA-AX-A0IW TCGA-AX-A0IZ TCGA-B5-A0JT 
       30.38         4.21        27.32        37.74        43.82        43.13 
TCGA-B5-A0K9 TCGA-B5-A11G TCGA-B5-A121 TCGA-BG-A0LW TCGA-BG-A0M8 TCGA-BG-A0VV 
        5.46       101.13         8.52         6.38        22.68         8.55 
TCGA-BG-A18A TCGA-BS-A0TD TCGA-BS-A0TG TCGA-BS-A0V7 TCGA-D1-A0ZP TCGA-D1-A0ZU 
        8.28        65.82        66.87        46.98        22.68        19.00 
TCGA-D1-A103 TCGA-D1-A15V TCGA-D1-A15Z TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A16I 
       15.78        33.27         1.91        29.33        32.09        11.47 
TCGA-D1-A16R TCGA-D1-A17F 
        0.69         1.28 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
    9.17     0.03     0.66     1.32     1.41     0.69 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   70.39    89.33    98.17   133.25   173.56   101.13 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 
   15.09    12.23    16.27    23.31    23.67    22.68 
[1] "9.2 - 70.4 (15.1)"  "0.0 - 89.3 (12.2)"  "0.7 - 98.2 (16.3)" 
[4] "1.3 - 133.2 (23.3)" "1.4 - 173.6 (23.7)" "0.7 - 101.1 (22.7)"
  [1] "subtype4" "subtype4" "subtype4" "subtype4" "subtype5" "subtype5"
  [7] "subtype5" "subtype5" "subtype2" "subtype5" "subtype4" "subtype5"
 [13] "subtype5" "subtype5" "subtype5" "subtype2" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype6" "subtype3" "subtype4" "subtype2"
 [25] "subtype3" "subtype3" "subtype6" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [37] "subtype3" "subtype6" "subtype4" "subtype3" "subtype3" "subtype3"
 [43] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
 [49] "subtype3" "subtype1" "subtype4" "subtype3" "subtype5" "subtype4"
 [55] "subtype3" "subtype5" "subtype3" "subtype3" "subtype5" "subtype5"
 [61] "subtype3" "subtype5" "subtype3" "subtype5" "subtype2" "subtype3"
 [67] "subtype4" "subtype4" "subtype5" "subtype2" "subtype3" "subtype6"
 [73] "subtype6" "subtype4" "subtype5" "subtype4" "subtype6" "subtype4"
 [79] "subtype5" "subtype3" "subtype5" "subtype3" "subtype4" "subtype3"
 [85] "subtype2" "subtype6" "subtype4" "subtype5" "subtype6" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype5" "subtype4" "subtype3"
 [97] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype6"
[103] "subtype5" "subtype2" "subtype1" "subtype5" "subtype5" "subtype4"
[109] "subtype5" "subtype6" "subtype5" "subtype5" "subtype2" "subtype5"
[115] "subtype5" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[121] "subtype1" "subtype1" "subtype4" "subtype5" "subtype3" "subtype6"
[127] "subtype5" "subtype4" "subtype5" "subtype2" "subtype3" "subtype2"
[133] "subtype2" "subtype5" "subtype2" "subtype4" "subtype5" "subtype6"
[139] "subtype6" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
[145] "subtype5" "subtype3" "subtype6" "subtype6" "subtype2" "subtype6"
[151] "subtype5" "subtype2" "subtype5" "subtype6" "subtype6" "subtype5"
[157] "subtype2" "subtype6" "subtype5" "subtype6" "subtype6" "subtype2"
[163] "subtype3" "subtype5" "subtype4" "subtype5" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype6" "subtype2" "subtype5"
[175] "subtype5" "subtype2" "subtype6" "subtype4" "subtype5" "subtype2"
[181] "subtype2" "subtype5" "subtype2" "subtype4" "subtype4" "subtype2"
[187] "subtype2" "subtype5" "subtype6" "subtype5" "subtype3" "subtype1"
[193] "subtype5" "subtype2" "subtype5" "subtype3" "subtype2" "subtype2"
[199] "subtype5" "subtype3"
  [1] "subtype4" "subtype4" "subtype4" "subtype4" "subtype5" "subtype5"
  [7] "subtype5" "subtype5" "subtype2" "subtype5" "subtype4" "subtype5"
 [13] "subtype5" "subtype5" "subtype5" "subtype2" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype6" "subtype3" "subtype4" "subtype2"
 [25] "subtype3" "subtype3" "subtype6" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [37] "subtype3" "subtype6" "subtype4" "subtype3" "subtype3" "subtype3"
 [43] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
 [49] "subtype3" "subtype1" "subtype4" "subtype3" "subtype5" "subtype4"
 [55] "subtype3" "subtype5" "subtype3" "subtype3" "subtype5" "subtype5"
 [61] "subtype3" "subtype5" "subtype3" "subtype5" "subtype2" "subtype3"
 [67] "subtype4" "subtype4" "subtype5" "subtype2" "subtype3" "subtype6"
 [73] "subtype6" "subtype4" "subtype5" "subtype4" "subtype6" "subtype4"
 [79] "subtype5" "subtype3" "subtype5" "subtype3" "subtype4" "subtype3"
 [85] "subtype2" "subtype6" "subtype4" "subtype5" "subtype6" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype5" "subtype4" "subtype3"
 [97] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype6"
[103] "subtype5" "subtype2" "subtype1" "subtype5" "subtype5" "subtype4"
[109] "subtype5" "subtype6" "subtype5" "subtype5" "subtype2" "subtype5"
[115] "subtype5" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[121] "subtype1" "subtype1" "subtype4" "subtype5" "subtype3" "subtype6"
[127] "subtype5" "subtype4" "subtype5" "subtype2" "subtype3" "subtype2"
[133] "subtype2" "subtype5" "subtype2" "subtype4" "subtype5" "subtype6"
[139] "subtype6" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
[145] "subtype5" "subtype3" "subtype6" "subtype6" "subtype2" "subtype6"
[151] "subtype5" "subtype2" "subtype5" "subtype6" "subtype6" "subtype5"
[157] "subtype2" "subtype6" "subtype5" "subtype6" "subtype6" "subtype2"
[163] "subtype3" "subtype5" "subtype4" "subtype5" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype6" "subtype2" "subtype5"
[175] "subtype5" "subtype2" "subtype6" "subtype4" "subtype5" "subtype2"
[181] "subtype2" "subtype5" "subtype2" "subtype4" "subtype4" "subtype2"
[187] "subtype2" "subtype5" "subtype6" "subtype5" "subtype3" "subtype1"
[193] "subtype5" "subtype2" "subtype5" "subtype3" "subtype2" "subtype2"
[199] "subtype5" "subtype3"
  [1] "subtype4" "subtype4" "subtype4" "subtype4" "subtype5" "subtype5"
  [7] "subtype5" "subtype5" "subtype2" "subtype5" "subtype4" "subtype5"
 [13] "subtype5" "subtype5" "subtype5" "subtype2" "subtype1" "subtype3"
 [19] "subtype4" "subtype4" "subtype6" "subtype3" "subtype4" "subtype2"
 [25] "subtype3" "subtype3" "subtype6" "subtype2" "subtype3" "subtype3"
 [31] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [37] "subtype3" "subtype6" "subtype4" "subtype3" "subtype3" "subtype3"
 [43] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
 [49] "subtype3" "subtype1" "subtype4" "subtype3" "subtype5" "subtype4"
 [55] "subtype3" "subtype5" "subtype3" "subtype3" "subtype5" "subtype5"
 [61] "subtype3" "subtype5" "subtype3" "subtype5" "subtype2" "subtype3"
 [67] "subtype4" "subtype4" "subtype5" "subtype2" "subtype3" "subtype6"
 [73] "subtype6" "subtype4" "subtype5" "subtype4" "subtype6" "subtype4"
 [79] "subtype5" "subtype3" "subtype5" "subtype3" "subtype4" "subtype3"
 [85] "subtype2" "subtype6" "subtype4" "subtype5" "subtype6" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype5" "subtype4" "subtype3"
 [97] "subtype5" "subtype4" "subtype2" "subtype1" "subtype6" "subtype6"
[103] "subtype5" "subtype2" "subtype1" "subtype5" "subtype5" "subtype4"
[109] "subtype5" "subtype6" "subtype5" "subtype5" "subtype2" "subtype5"
[115] "subtype5" "subtype3" "subtype5" "subtype3" "subtype3" "subtype6"
[121] "subtype1" "subtype1" "subtype4" "subtype5" "subtype3" "subtype6"
[127] "subtype5" "subtype4" "subtype5" "subtype2" "subtype3" "subtype2"
[133] "subtype2" "subtype5" "subtype2" "subtype4" "subtype5" "subtype6"
[139] "subtype6" "subtype5" "subtype5" "subtype5" "subtype5" "subtype4"
[145] "subtype5" "subtype3" "subtype6" "subtype6" "subtype2" "subtype6"
[151] "subtype5" "subtype2" "subtype5" "subtype6" "subtype6" "subtype5"
[157] "subtype2" "subtype6" "subtype5" "subtype6" "subtype6" "subtype2"
[163] "subtype3" "subtype5" "subtype4" "subtype5" "subtype3" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype6" "subtype2" "subtype5"
[175] "subtype5" "subtype2" "subtype6" "subtype4" "subtype5" "subtype2"
[181] "subtype2" "subtype5" "subtype2" "subtype4" "subtype4" "subtype2"
[187] "subtype2" "subtype5" "subtype6" "subtype5" "subtype3" "subtype1"
[193] "subtype5" "subtype2" "subtype5" "subtype3" "subtype2" "subtype2"
[199] "subtype5" "subtype3"
D6V2, continuous
D6V3, multiclass
D6V4, binary
          cls
clus        0  1
  subtype1  2  5
  subtype2 10 23
  subtype3 15 24
  subtype4 19 20
  subtype5 25 31
  subtype6  9 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    5
  subtype2   10   23
  subtype3   15   24
  subtype4   19   20
  subtype5   25   31
  subtype6    9   17

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 120  21
  subtype2 109   3
  subtype3 106   8
subtype1 subtype2 subtype3 
     141      112      114 
subtype1 subtype2 subtype3 
      21        3        8 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GA TCGA-A5-A0GH 
      106.88       133.25        35.47        25.97        17.85        54.94 
TCGA-A5-A0GR TCGA-A5-A0R6 TCGA-A5-A1OF TCGA-A5-A1OG TCGA-AJ-A23M TCGA-AJ-A2QK 
       25.64        12.13         7.92        11.44         1.02         0.39 
TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 TCGA-AP-A059 TCGA-AP-A05A 
       21.99         5.95        23.31        66.61         8.22        39.39 
TCGA-AP-A05D TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A05P TCGA-AP-A0L8 TCGA-AP-A0L9 
       44.84        27.32        21.01         8.55        48.79       113.19 
TCGA-AP-A0LD TCGA-AP-A0LF TCGA-AP-A0LH TCGA-AP-A0LI TCGA-AP-A0LM TCGA-AP-A1DK 
       95.54         3.39        36.36        85.55        27.12        54.25 
TCGA-AP-A1DQ TCGA-AP-A1DV TCGA-AP-A1E4 TCGA-AW-A1PO TCGA-AX-A06B TCGA-AX-A06D 
       38.93         6.71         8.78         0.56        53.88        12.26 
TCGA-AX-A06F TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A1C4 TCGA-AX-A1C5 TCGA-AX-A1C7 
       51.09        28.54        37.74        13.28        19.20        16.93 
TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CC TCGA-AX-A1CF TCGA-AX-A1CP TCGA-AX-A1CR 
       13.55        20.28        12.43        76.83        36.39        11.08 
TCGA-AX-A2H2 TCGA-AX-A2H5 TCGA-AX-A2H8 TCGA-AX-A2HD TCGA-AX-A2HF TCGA-AX-A2HG 
        4.77        71.24        61.18        40.50        16.08        21.70 
TCGA-AX-A2HK TCGA-AX-A2IO TCGA-B5-A0K3 TCGA-B5-A0K4 TCGA-B5-A0K8 TCGA-B5-A11E 
        2.96        38.66        23.01        15.32        17.82         8.71 
TCGA-B5-A11I TCGA-B5-A11P TCGA-B5-A1MR TCGA-B5-A1MU TCGA-B5-A1MY TCGA-B5-A1N2 
       67.00        36.82       187.07        50.86        11.87        12.79 
TCGA-BG-A0M6 TCGA-BG-A0MT TCGA-BG-A0YV TCGA-BG-A18C TCGA-BG-A220 TCGA-BG-A221 
        7.92         7.89         6.12         5.56         7.23         1.51 
TCGA-BG-A222 TCGA-BG-A2AE TCGA-BG-A2L7 TCGA-BK-A0CC TCGA-BK-A139 TCGA-BK-A26L 
        0.46         0.53         5.82         6.94         7.86         7.66 
TCGA-BS-A0TE TCGA-BS-A0TJ TCGA-BS-A0U9 TCGA-BS-A0UV TCGA-BS-A0V8 TCGA-D1-A0ZP 
        4.80        49.78        57.50         4.90        49.55        22.68 
TCGA-D1-A0ZS TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A15X TCGA-D1-A167 TCGA-D1-A168 
        4.83        12.39        33.27        29.88        15.72        30.02 
TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16N TCGA-D1-A16S TCGA-D1-A16Y 
       27.42        11.47        24.39        21.04         7.82        17.49 
TCGA-D1-A175 TCGA-D1-A179 TCGA-D1-A17H TCGA-D1-A17K TCGA-D1-A1NU TCGA-D1-A1NW 
        6.64         6.77        14.93        14.10        10.22         0.72 
TCGA-D1-A1NX TCGA-D1-A1NY TCGA-D1-A1O0 TCGA-D1-A1O8 TCGA-D1-A2G6 TCGA-D1-A2G7 
       13.12        13.02         0.07         3.95         8.48        44.88 
TCGA-DI-A0WH TCGA-DI-A1NN TCGA-DI-A1NO TCGA-DI-A2QU TCGA-E6-A1LZ TCGA-EC-A1QX 
       13.32        31.00         9.37        31.10        42.38         2.17 
TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22T TCGA-EO-A2CG TCGA-EO-A2CH TCGA-EY-A1G7 
       10.92        10.78        33.01        22.09        17.49         6.21 
TCGA-EY-A1GC TCGA-EY-A1GM TCGA-EY-A1GR TCGA-EY-A1GS TCGA-EY-A1GT TCGA-EY-A1GV 
        4.54         6.87        11.31         9.34         9.86         8.45 
TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A215 TCGA-EY-A2OM TCGA-FI-A2CX TCGA-FI-A2CY 
        3.58         8.28        12.85         7.73        40.01        34.98 
TCGA-FI-A2D0 TCGA-FI-A2D2 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW 
       33.99        36.00        14.01         8.98        84.07        59.01 
TCGA-FI-A2EX TCGA-FI-A2F8 TCGA-FI-A2F9 
        9.07        25.02        26.01 

$subtype2
TCGA-A5-A0G9 TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GP TCGA-A5-A0GQ 
       71.18         3.19        89.33        82.72        35.74        38.37 
TCGA-A5-A0R8 TCGA-A5-A0RA TCGA-A5-A0VO TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-AJ-A2QL 
        4.11        18.25         4.21         9.60         7.99         1.61 
TCGA-AJ-A2QN TCGA-AP-A05O TCGA-AP-A0LJ TCGA-AP-A0LO TCGA-AP-A0LP TCGA-AP-A0LS 
        2.01        12.20        31.73        33.40        61.64        54.84 
TCGA-AP-A1DP TCGA-AX-A05S TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A05Y TCGA-AX-A06J 
       35.54        13.58        19.82        29.65        72.03        30.02 
TCGA-AX-A06L TCGA-AX-A1C9 TCGA-AX-A1CE TCGA-AX-A1CJ TCGA-AX-A2H7 TCGA-B5-A0JS 
       48.62        15.25        20.05        54.08        33.53        40.80 
TCGA-B5-A0JT TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0KB TCGA-B5-A11G 
       43.13        44.71        24.53        22.42         4.08       101.13 
TCGA-B5-A11H TCGA-B5-A11J TCGA-B5-A11L TCGA-B5-A11M TCGA-B5-A11O TCGA-B5-A11S 
       76.18        42.44        45.90        36.72        33.99        21.37 
TCGA-B5-A11W TCGA-B5-A11Y TCGA-B5-A121 TCGA-B5-A1MV TCGA-BG-A0M0 TCGA-BG-A0M2 
       11.15        10.36         8.52        12.49         7.79        10.39 
TCGA-BG-A0M4 TCGA-BG-A0M7 TCGA-BG-A0M9 TCGA-BG-A0MC TCGA-BG-A0MG TCGA-BG-A0MH 
       15.78        22.95        25.15        27.19        29.46        44.09 
TCGA-BG-A0RY TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VZ TCGA-BG-A0W1 TCGA-BG-A0W2 
        4.21         8.55         4.31        28.54        29.82        37.84 
TCGA-BG-A0YU TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B TCGA-BK-A0C9 TCGA-BK-A0CA 
        9.17         7.59         8.28         5.10         9.50        12.20 
TCGA-BK-A13C TCGA-BS-A0TA TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0U5 TCGA-BS-A0UA 
        6.64        23.47        74.30        65.82        72.46        83.51 
TCGA-BS-A0UM TCGA-BS-A0V6 TCGA-D1-A0ZO TCGA-D1-A0ZR TCGA-D1-A0ZV TCGA-D1-A103 
       72.03        54.25         2.27         0.56        11.51        15.78 
TCGA-D1-A15W TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A169 TCGA-D1-A16D 
       30.08        29.33        32.09         0.66        29.75        29.85 
TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16X TCGA-D1-A174 TCGA-D1-A176 
       29.88         2.63        28.41         3.65        10.65        16.64 
TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17N TCGA-D1-A17Q 
        0.62         6.97         5.26         1.28         1.51         1.78 
TCGA-D1-A17S TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NZ TCGA-D1-A1O5 
       10.72         2.30        13.02         1.41         0.26        12.39 
TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-EC-A24G TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH 
        1.05        41.42         1.51        18.15        17.49        17.33 
TCGA-EY-A1GK TCGA-EY-A1GW TCGA-EY-A1H0 TCGA-FI-A2F4 
       16.54         8.55        11.15        28.93 

$subtype3
TCGA-A5-A0GB TCGA-A5-A0GI TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-A5-A0GN TCGA-A5-A0GU 
        9.04        57.53        47.57        47.61        48.56        16.27 
TCGA-A5-A0GV TCGA-A5-A0GW TCGA-A5-A0GX TCGA-A5-A0R7 TCGA-A5-A0R9 TCGA-A5-A0VP 
       15.95        12.66        30.38         1.32         9.67        30.48 
TCGA-A5-A0VQ TCGA-AJ-A23O TCGA-AP-A051 TCGA-AP-A05N TCGA-AP-A0LE TCGA-AP-A0LG 
        5.82         1.97        83.67         7.86        98.17        63.16 
TCGA-AP-A0LL TCGA-AP-A0LN TCGA-AP-A0LT TCGA-AP-A0LV TCGA-AP-A1DH TCGA-AP-A1DM 
       70.39        65.49        38.96        12.66        59.70        43.69 
TCGA-AP-A1DO TCGA-AP-A1DR TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AP-A1E3 TCGA-AX-A05Z 
       31.30        37.18        22.72        10.42        17.19        46.45 
TCGA-AX-A060 TCGA-AX-A062 TCGA-AX-A063 TCGA-AX-A064 TCGA-AX-A06H TCGA-AX-A0IS 
       35.34        45.96        66.54        34.98        27.39        35.01 
TCGA-AX-A0IZ TCGA-AX-A0J0 TCGA-AX-A0J1 TCGA-AX-A1CI TCGA-AX-A1CK TCGA-AX-A1CN 
       43.82        40.08        65.88        72.56        67.46        25.12 
TCGA-AX-A2HA TCGA-AX-A2HC TCGA-AX-A2HJ TCGA-B5-A0JU TCGA-B5-A0JV TCGA-B5-A0JY 
       68.71        33.40        27.32        48.76        36.99        26.99 
TCGA-B5-A0JZ TCGA-B5-A0K0 TCGA-B5-A0K6 TCGA-B5-A0K7 TCGA-B5-A11F TCGA-B5-A11N 
       22.65        22.32        14.01        12.23       173.56        37.71 
TCGA-B5-A11Q TCGA-B5-A11U TCGA-B5-A11V TCGA-B5-A11X TCGA-B5-A11Z TCGA-B5-A1MX 
       23.08         8.91         7.59        11.08         9.57         5.72 
TCGA-B5-A1MZ TCGA-BG-A0LW TCGA-BG-A0LX TCGA-BG-A0M3 TCGA-BG-A0M8 TCGA-BG-A0MA 
       15.29         6.38         8.28        24.39        22.68        10.72 
TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MQ TCGA-BG-A0MS TCGA-BG-A0MU TCGA-BG-A0VT 
       23.47        33.57        25.02        18.18         7.59         7.36 
TCGA-BG-A0VX TCGA-BG-A186 TCGA-BK-A0CB TCGA-BS-A0T9 TCGA-BS-A0TG TCGA-BS-A0TI 
       16.11         7.56         6.18        46.95        66.87        47.44 
TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UF TCGA-BS-A0UJ TCGA-BS-A0UL TCGA-BS-A0UT 
       30.71        85.68        60.59         0.89         1.18        19.56 
TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A0ZQ TCGA-D1-A0ZU TCGA-D1-A101 
       54.61        39.68        16.83         0.26        19.00         1.74 
TCGA-D1-A102 TCGA-D1-A15Z TCGA-D1-A160 TCGA-D1-A163 TCGA-D1-A16B TCGA-D1-A16Q 
        1.41         1.91         3.68        30.84        24.46         7.27 
TCGA-D1-A16R TCGA-D1-A16V TCGA-D1-A177 TCGA-D1-A17C TCGA-D1-A17L TCGA-D1-A17M 
        0.69         1.41        11.41         0.03        15.09        10.22 
TCGA-D1-A17R TCGA-DI-A1BY TCGA-E6-A1LX TCGA-E6-A1M0 TCGA-EO-A22R TCGA-EO-A22S 
       13.15        36.62        23.38        14.04        31.96        35.05 
TCGA-EY-A1G8 TCGA-EY-A1GD TCGA-EY-A1GI TCGA-EY-A1GQ TCGA-EY-A1GU TCGA-FI-A2D4 
       14.96         8.15        16.64        11.18         8.52         7.96 

subtype1 subtype2 subtype3 
    0.07     0.26     0.03 
subtype1 subtype2 subtype3 
  187.07   101.13   173.56 
subtype1 subtype2 subtype3 
   15.32    17.82    22.70 
[1] "0.1 - 187.1 (15.3)" "0.3 - 101.1 (17.8)" "0.0 - 173.6 (22.7)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[367] "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[367] "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [37] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[229] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[259] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[295] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[343] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[349] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[367] "subtype1"
D7V2, continuous
D7V3, multiclass
D7V4, binary
          cls
clus        0  1
  subtype1 55 87
  subtype2 28 85
  subtype3 40 74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55   87
  subtype2   28   85
  subtype3   40   74
     clus
vv    subtype1 subtype2 subtype3
  NO        55       28       40
  YES       87       85       74

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1  58   6
  subtype2  96   2
  subtype3  57   8
  subtype4 124  16
subtype1 subtype2 subtype3 subtype4 
      64       98       65      140 
subtype1 subtype2 subtype3 subtype4 
       6        2        8       16 
$subtype1
TCGA-A5-A0GI TCGA-A5-A0GM TCGA-A5-A0GN TCGA-A5-A0GU TCGA-A5-A0GV TCGA-A5-A0GX 
       57.53        47.61        48.56        16.27        15.95        30.38 
TCGA-A5-A0R9 TCGA-A5-A0VQ TCGA-AP-A05N TCGA-AP-A0LG TCGA-AP-A0LL TCGA-AP-A0LN 
        9.67         5.82         7.86        63.16        70.39        65.49 
TCGA-AP-A0LV TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A062 TCGA-AX-A0IS TCGA-AX-A0IZ 
       12.66        19.82        29.65        45.96        35.01        43.82 
TCGA-AX-A1CI TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A2HJ TCGA-B5-A0JU TCGA-B5-A0K0 
       72.56        67.46        25.12        27.32        48.76        22.32 
TCGA-B5-A0K6 TCGA-B5-A0K7 TCGA-B5-A11F TCGA-B5-A11V TCGA-B5-A11Z TCGA-B5-A1MZ 
       14.01        12.23       173.56         7.59         9.57        15.29 
TCGA-BG-A0LW TCGA-BG-A0M3 TCGA-BG-A0MA TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MS 
        6.38        24.39        10.72        23.47        33.57        18.18 
TCGA-BG-A0MU TCGA-BG-A0VT TCGA-BG-A0VX TCGA-BG-A0W2 TCGA-BG-A186 TCGA-BK-A0CB 
        7.59         7.36        16.11        37.84         7.56         6.18 
TCGA-BS-A0T9 TCGA-BS-A0TG TCGA-BS-A0UJ TCGA-BS-A0UT TCGA-BS-A0VI TCGA-BS-A0WQ 
       46.95        66.87         0.89        19.56        54.61        39.68 
TCGA-D1-A0ZN TCGA-D1-A0ZU TCGA-D1-A102 TCGA-D1-A15Z TCGA-D1-A16B TCGA-D1-A16Q 
       16.83        19.00         1.41         1.91        24.46         7.27 
TCGA-D1-A16R TCGA-D1-A17C TCGA-D1-A17M TCGA-D1-A17N TCGA-D1-A17R TCGA-D1-A17T 
        0.69         0.03        10.22         1.51        13.15         2.30 
TCGA-DI-A1BY TCGA-EY-A1G8 TCGA-EY-A1GD TCGA-EY-A1GI 
       36.62        14.96         8.15        16.64 

$subtype2
TCGA-A5-A0G9 TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GP TCGA-A5-A0GQ 
       71.18         3.19        89.33        82.72        35.74        38.37 
TCGA-A5-A0R8 TCGA-A5-A0RA TCGA-A5-A0VO TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-AJ-A2QL 
        4.11        18.25         4.21         9.60         7.99         1.61 
TCGA-AJ-A2QN TCGA-AP-A05O TCGA-AP-A0LJ TCGA-AP-A0LO TCGA-AP-A0LP TCGA-AP-A1DP 
        2.01        12.20        31.73        33.40        61.64        35.54 
TCGA-AX-A05Y TCGA-AX-A06J TCGA-AX-A06L TCGA-AX-A1C9 TCGA-AX-A1CJ TCGA-B5-A0JS 
       72.03        30.02        48.62        15.25        54.08        40.80 
TCGA-B5-A0JT TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A11G TCGA-B5-A11J 
       43.13        44.71        24.53        22.42       101.13        42.44 
TCGA-B5-A11L TCGA-B5-A11M TCGA-B5-A11O TCGA-B5-A11S TCGA-B5-A11W TCGA-B5-A11Y 
       45.90        36.72        33.99        21.37        11.15        10.36 
TCGA-B5-A121 TCGA-B5-A1MV TCGA-BG-A0M0 TCGA-BG-A0M2 TCGA-BG-A0M7 TCGA-BG-A0M9 
        8.52        12.49         7.79        10.39        22.95        25.15 
TCGA-BG-A0MC TCGA-BG-A0MH TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VZ TCGA-BG-A0W1 
       27.19        44.09         8.55         4.31        28.54        29.82 
TCGA-BG-A0YU TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B TCGA-BK-A0C9 TCGA-BK-A0CA 
        9.17         7.59         8.28         5.10         9.50        12.20 
TCGA-BK-A13C TCGA-BS-A0TA TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0U5 TCGA-BS-A0UA 
        6.64        23.47        74.30        65.82        72.46        83.51 
TCGA-BS-A0UM TCGA-BS-A0V6 TCGA-D1-A0ZO TCGA-D1-A0ZR TCGA-D1-A0ZV TCGA-D1-A103 
       72.03        54.25         2.27         0.56        11.51        15.78 
TCGA-D1-A15W TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A16D TCGA-D1-A16E 
       30.08        29.33        32.09         0.66        29.85        29.88 
TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16X TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 
        2.63        28.41         3.65        10.65         6.64        16.64 
TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17L TCGA-D1-A17Q 
        0.62         6.97         5.26         1.28        15.09         1.78 
TCGA-D1-A17S TCGA-D1-A17U TCGA-D1-A1NS TCGA-D1-A1NZ TCGA-D1-A1O5 TCGA-D1-A1O7 
       10.72        13.02         1.41         0.26        12.39         1.05 
TCGA-D1-A2G5 TCGA-EC-A24G TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GK 
       41.42         1.51        18.15        17.49        17.33        16.54 
TCGA-EY-A1H0 TCGA-FI-A2F4 
       11.15        28.93 

$subtype3
TCGA-A5-A0G1 TCGA-A5-A0GA TCGA-A5-A0GH TCGA-A5-A0R7 TCGA-A5-A1OF TCGA-AJ-A23O 
      106.88        17.85        54.94         1.32         7.92         1.97 
TCGA-AP-A051 TCGA-AP-A059 TCGA-AP-A0LE TCGA-AP-A0LH TCGA-AP-A0LM TCGA-AP-A0LS 
       83.67         8.22        98.17        36.36        27.12        54.84 
TCGA-AP-A0LT TCGA-AP-A1DM TCGA-AP-A1DO TCGA-AP-A1DR TCGA-AP-A1DV TCGA-AP-A1E1 
       38.96        43.69        31.30        37.18         6.71        10.42 
TCGA-AX-A05S TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A063 TCGA-AX-A064 TCGA-AX-A06B 
       13.58        46.45        35.34        66.54        34.98        53.88 
TCGA-AX-A06F TCGA-AX-A06H TCGA-AX-A0J1 TCGA-AX-A1C4 TCGA-AX-A2HA TCGA-B5-A0JV 
       51.09        27.39        65.88        13.28        68.71        36.99 
TCGA-B5-A0JZ TCGA-B5-A11H TCGA-B5-A11N TCGA-B5-A11Q TCGA-B5-A1MX TCGA-BG-A0LX 
       22.65        76.18        37.71        23.08         5.72         8.28 
TCGA-BG-A0M4 TCGA-BG-A0M8 TCGA-BG-A0MQ TCGA-BG-A0RY TCGA-BG-A222 TCGA-BS-A0TE 
       15.78        22.68        25.02         4.21         0.46         4.80 
TCGA-BS-A0TI TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UL TCGA-BS-A0V8 TCGA-D1-A0ZQ 
       47.44        30.71        85.68         1.18        49.55         0.26 
TCGA-D1-A101 TCGA-D1-A15X TCGA-D1-A160 TCGA-D1-A163 TCGA-D1-A16G TCGA-D1-A16J 
        1.74        29.88         3.68        30.84        27.42        24.39 
TCGA-D1-A177 TCGA-D1-A17H TCGA-D1-A1NY TCGA-D1-A2G6 TCGA-E6-A1LX TCGA-EC-A1QX 
       11.41        14.93        13.02         8.48        23.38         2.17 
TCGA-EO-A22R TCGA-EO-A22T TCGA-EY-A1GQ TCGA-EY-A1GU TCGA-EY-A215 
       31.96        33.01        11.18         8.52        12.85 

$subtype4
TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GB TCGA-A5-A0GJ TCGA-A5-A0GR 
      133.25        35.47        25.97         9.04        47.57        25.64 
TCGA-A5-A0GW TCGA-A5-A0R6 TCGA-A5-A0VP TCGA-A5-A1OG TCGA-AJ-A23M TCGA-AJ-A2QK 
       12.66        12.13        30.48        11.44         1.02         0.39 
TCGA-AP-A052 TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A056 TCGA-AP-A05A TCGA-AP-A05D 
       21.99         5.95        23.31        66.61        39.39        44.84 
TCGA-AP-A05H TCGA-AP-A05J TCGA-AP-A05P TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LD 
       27.32        21.01         8.55        48.79       113.19        95.54 
TCGA-AP-A0LF TCGA-AP-A0LI TCGA-AP-A1DH TCGA-AP-A1DK TCGA-AP-A1DQ TCGA-AP-A1E0 
        3.39        85.55        59.70        54.25        38.93        22.72 
TCGA-AP-A1E3 TCGA-AP-A1E4 TCGA-AW-A1PO TCGA-AX-A06D TCGA-AX-A0IU TCGA-AX-A0IW 
       17.19         8.78         0.56        12.26        28.54        37.74 
TCGA-AX-A0J0 TCGA-AX-A1C5 TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CC 
       40.08        19.20        16.93        13.55        20.28        12.43 
TCGA-AX-A1CE TCGA-AX-A1CF TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H5 
       20.05        76.83        36.39        11.08         4.77        71.24 
TCGA-AX-A2H7 TCGA-AX-A2H8 TCGA-AX-A2HC TCGA-AX-A2HD TCGA-AX-A2HF TCGA-AX-A2HG 
       33.53        61.18        33.40        40.50        16.08        21.70 
TCGA-AX-A2HK TCGA-AX-A2IO TCGA-B5-A0JY TCGA-B5-A0K3 TCGA-B5-A0K4 TCGA-B5-A0K8 
        2.96        38.66        26.99        23.01        15.32        17.82 
TCGA-B5-A0KB TCGA-B5-A11E TCGA-B5-A11I TCGA-B5-A11P TCGA-B5-A11U TCGA-B5-A11X 
        4.08         8.71        67.00        36.82         8.91        11.08 
TCGA-B5-A1MR TCGA-B5-A1MU TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-BG-A0M6 TCGA-BG-A0MG 
      187.07        50.86        11.87        12.79         7.92        29.46 
TCGA-BG-A0MT TCGA-BG-A0YV TCGA-BG-A18C TCGA-BG-A220 TCGA-BG-A221 TCGA-BG-A2AE 
        7.89         6.12         5.56         7.23         1.51         0.53 
TCGA-BG-A2L7 TCGA-BK-A0CC TCGA-BK-A139 TCGA-BK-A26L TCGA-BS-A0TJ TCGA-BS-A0U9 
        5.82         6.94         7.86         7.66        49.78        57.50 
TCGA-BS-A0UF TCGA-BS-A0UV TCGA-D1-A0ZP TCGA-D1-A0ZS TCGA-D1-A0ZZ TCGA-D1-A15V 
       60.59         4.90        22.68         4.83        12.39        33.27 
TCGA-D1-A167 TCGA-D1-A168 TCGA-D1-A169 TCGA-D1-A16I TCGA-D1-A16N TCGA-D1-A16S 
       15.72        30.02        29.75        11.47        21.04         7.82 
TCGA-D1-A16V TCGA-D1-A16Y TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A1NU TCGA-D1-A1NW 
        1.41        17.49         6.77        14.10        10.22         0.72 
TCGA-D1-A1NX TCGA-D1-A1O0 TCGA-D1-A1O8 TCGA-D1-A2G7 TCGA-DI-A0WH TCGA-DI-A1NN 
       13.12         0.07         3.95        44.88        13.32        31.00 
TCGA-DI-A1NO TCGA-DI-A2QU TCGA-E6-A1LZ TCGA-E6-A1M0 TCGA-EO-A1Y5 TCGA-EO-A1Y8 
        9.37        31.10        42.38        14.04        10.92        10.78 
TCGA-EO-A22S TCGA-EO-A2CG TCGA-EO-A2CH TCGA-EY-A1G7 TCGA-EY-A1GC TCGA-EY-A1GM 
       35.05        22.09        17.49         6.21         4.54         6.87 
TCGA-EY-A1GR TCGA-EY-A1GS TCGA-EY-A1GT TCGA-EY-A1GV TCGA-EY-A1GW TCGA-EY-A212 
       11.31         9.34         9.86         8.45         8.55         3.58 
TCGA-EY-A214 TCGA-EY-A2OM TCGA-FI-A2CX TCGA-FI-A2CY TCGA-FI-A2D0 TCGA-FI-A2D2 
        8.28         7.73        40.01        34.98        33.99        36.00 
TCGA-FI-A2D4 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW TCGA-FI-A2EX 
        7.96        14.01         8.98        84.07        59.01         9.07 
TCGA-FI-A2F8 TCGA-FI-A2F9 
       25.02        26.01 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.26     0.26     0.07 
subtype1 subtype2 subtype3 subtype4 
  173.56   101.13   106.88   187.07 
subtype1 subtype2 subtype3 subtype4 
  17.505   16.985   25.020   16.505 
[1] "0.0 - 173.6 (17.5)" "0.3 - 101.1 (17.0)" "0.3 - 106.9 (25.0)"
[4] "0.1 - 187.1 (16.5)"
  [1] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype3"
  [7] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [31] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
 [37] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [43] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
 [49] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype4"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype3"
 [73] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype2"
[109] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[139] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[145] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[151] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype4" "subtype3" "subtype2" "subtype4" "subtype1" "subtype2"
[163] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[169] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
[205] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[211] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[217] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype4"
[229] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[235] "subtype1" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[247] "subtype3" "subtype2" "subtype4" "subtype1" "subtype2" "subtype4"
[253] "subtype3" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[259] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[265] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
[277] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[295] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[307] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[313] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[325] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[331] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[343] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[349] "subtype4" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[355] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[361] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[367] "subtype4"
  [1] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype3"
  [7] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [31] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
 [37] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [43] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
 [49] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype4"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype3"
 [73] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype2"
[109] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[139] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[145] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[151] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype4" "subtype3" "subtype2" "subtype4" "subtype1" "subtype2"
[163] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[169] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
[205] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[211] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[217] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype4"
[229] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[235] "subtype1" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[247] "subtype3" "subtype2" "subtype4" "subtype1" "subtype2" "subtype4"
[253] "subtype3" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[259] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[265] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
[277] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[295] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[307] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[313] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[325] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[331] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[343] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[349] "subtype4" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[355] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[361] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[367] "subtype4"
  [1] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype3"
  [7] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [13] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype3"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype4" "subtype1"
 [31] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
 [37] "subtype4" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [43] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
 [49] "subtype4" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
 [55] "subtype4" "subtype3" "subtype4" "subtype1" "subtype3" "subtype4"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype3"
 [73] "subtype3" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype1"
 [85] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[103] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype2"
[109] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[139] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[145] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype3"
[151] "subtype4" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype4" "subtype3" "subtype2" "subtype4" "subtype1" "subtype2"
[163] "subtype4" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[169] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
[181] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
[205] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[211] "subtype3" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
[217] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype4"
[229] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[235] "subtype1" "subtype3" "subtype2" "subtype1" "subtype4" "subtype2"
[241] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[247] "subtype3" "subtype2" "subtype4" "subtype1" "subtype2" "subtype4"
[253] "subtype3" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[259] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[265] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
[271] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype2"
[277] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype4"
[295] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[301] "subtype1" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[307] "subtype3" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[313] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype3"
[325] "subtype2" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[331] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[343] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[349] "subtype4" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
[355] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[361] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[367] "subtype4"
D8V2, continuous
D8V3, multiclass
D8V4, binary
          cls
clus        0  1
  subtype1 18 47
  subtype2 25 73
  subtype3 33 32
  subtype4 47 94
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18   47
  subtype2   25   73
  subtype3   33   32
  subtype4   47   94
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        18       25       33       47
  YES       47       73       32       94

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1 132  24
  subtype2 142   3
  subtype3 118  12
subtype1 subtype2 subtype3 
     156      145      130 
subtype1 subtype2 subtype3 
      24        3       12 
$subtype1
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GA TCGA-A5-A0GH 
      106.88       133.25        35.47        25.97        17.85        54.94 
TCGA-A5-A0GR TCGA-A5-A1OF TCGA-A5-A1OG TCGA-A5-A2K2 TCGA-A5-A2K3 TCGA-A5-A2K4 
       25.64         7.92        11.44        91.00        46.32        28.64 
TCGA-A5-A2K5 TCGA-A5-A2K7 TCGA-A5-A3LO TCGA-A5-A3LP TCGA-AJ-A23M TCGA-AJ-A2QM 
        5.29         5.13         7.33         7.56         1.02         1.02 
TCGA-AJ-A2QO TCGA-AJ-A3BD TCGA-AJ-A3BF TCGA-AJ-A3EJ TCGA-AJ-A3EK TCGA-AJ-A3EL 
        2.99         0.49         1.12         1.64         2.10         2.14 
TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NF TCGA-AJ-A3NG TCGA-AJ-A3OJ TCGA-AP-A053 
        1.64         0.92         1.35         1.71         1.94         5.95 
TCGA-AP-A059 TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LF TCGA-AP-A0LI TCGA-AP-A0LM 
        8.22        48.79       113.19         3.39        85.55        27.12 
TCGA-AP-A1DH TCGA-AP-A1DQ TCGA-AP-A1E3 TCGA-AP-A1E4 TCGA-AX-A06B TCGA-AX-A06F 
       59.70        38.93        17.19         8.78        53.88        51.09 
TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CC 
       28.54        37.74        16.93        13.55        20.28        12.43 
TCGA-AX-A1CF TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2H5 
       76.83        36.39        11.08         4.77        30.08        71.24 
TCGA-AX-A2H8 TCGA-AX-A2HF TCGA-AX-A2HG TCGA-AX-A2HH TCGA-AX-A2HK TCGA-AX-A2IN 
       61.18        16.08        21.70        17.72         2.96        31.10 
TCGA-AX-A2IO TCGA-AX-A3FS TCGA-AX-A3FT TCGA-AX-A3G1 TCGA-AX-A3G3 TCGA-AX-A3G4 
       38.66         0.23         0.10        20.52         0.03         0.13 
TCGA-AX-A3G9 TCGA-AX-A3GI TCGA-B5-A0K3 TCGA-B5-A0K8 TCGA-B5-A11H TCGA-B5-A11L 
        8.35         0.13        23.01        17.82        76.18        45.90 
TCGA-B5-A1MR TCGA-B5-A1MU TCGA-B5-A1MW TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-BG-A0LX 
      187.07        50.86         7.23        11.87        12.79         8.28 
TCGA-BG-A0M6 TCGA-BG-A0YV TCGA-BG-A221 TCGA-BG-A2AE TCGA-BK-A139 TCGA-BK-A26L 
        7.92         6.12         1.51         0.53         7.86         7.66 
TCGA-BS-A0TE TCGA-BS-A0TJ TCGA-BS-A0U9 TCGA-BS-A0UF TCGA-BS-A0UV TCGA-BS-A0V8 
        4.80        49.78        57.50        60.59         4.90        49.55 
TCGA-D1-A0ZP TCGA-D1-A0ZS TCGA-D1-A0ZZ TCGA-D1-A15V TCGA-D1-A15X TCGA-D1-A167 
       22.68         4.83        12.39        33.27        29.88        15.72 
TCGA-D1-A168 TCGA-D1-A16G TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16S TCGA-D1-A16V 
       30.02        27.42        11.47        24.39         7.82         1.41 
TCGA-D1-A17C TCGA-D1-A17H TCGA-D1-A1NU TCGA-D1-A1NW TCGA-D1-A1NX TCGA-D1-A2G0 
        0.03        14.93        10.22         0.72        13.12         3.52 
TCGA-D1-A2G7 TCGA-D1-A3DA TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A1BU TCGA-DI-A1NN 
       44.88         0.26         4.27         4.11        33.04        31.00 
TCGA-DI-A1NO TCGA-DI-A2QT TCGA-DI-A2QU TCGA-DI-A2QY TCGA-E6-A1LZ TCGA-E6-A2P8 
        9.37        12.39        31.10        91.96        42.38         2.37 
TCGA-EC-A1QX TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22T TCGA-EO-A22X TCGA-EO-A2CG 
        2.17        10.92        10.78        33.01        30.54        22.09 
TCGA-EO-A2CH TCGA-EY-A1G7 TCGA-EY-A1GC TCGA-EY-A1GJ TCGA-EY-A1GM TCGA-EY-A1GO 
       17.49         6.21         4.54        16.77         6.87        11.84 
TCGA-EY-A1GP TCGA-EY-A1GQ TCGA-EY-A1GS TCGA-EY-A1GT TCGA-EY-A1GV TCGA-EY-A210 
       11.44        11.18         9.34         9.86         8.45         5.42 
TCGA-EY-A212 TCGA-EY-A214 TCGA-EY-A215 TCGA-EY-A2ON TCGA-EY-A2OQ TCGA-FI-A2CX 
        3.58         8.28        12.85         5.62         9.63        40.01 
TCGA-FI-A2CY TCGA-FI-A2D0 TCGA-FI-A2D2 TCGA-FI-A2D5 TCGA-FI-A2D6 TCGA-FI-A2EU 
       34.98        33.99        36.00        14.01         8.98        84.07 
TCGA-FI-A2EW TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-H5-A2HR 
       59.01         9.07        29.03        25.02        26.01         1.74 

$subtype2
TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GJ TCGA-A5-A0GM TCGA-A5-A0GQ 
        3.19        89.33        82.72        47.57        47.61        38.37 
TCGA-A5-A0GU TCGA-A5-A0GX TCGA-A5-A0R6 TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA 
       16.27        30.38        12.13         4.11         9.67        18.25 
TCGA-A5-A0VO TCGA-A5-A0VP TCGA-A5-A1OJ TCGA-A5-A1OK TCGA-AJ-A2QK TCGA-AJ-A2QL 
        4.21        30.48         9.60         7.99         0.39         1.61 
TCGA-AJ-A3BI TCGA-AJ-A3BK TCGA-AJ-A3I9 TCGA-AJ-A3OK TCGA-AP-A05O TCGA-AP-A0LJ 
        2.01         1.68         1.28         4.67        12.20        31.73 
TCGA-AP-A0LP TCGA-AP-A0LS TCGA-AP-A1DK TCGA-AP-A1DP TCGA-AP-A1DV TCGA-AX-A05S 
       61.64        54.84        54.25        35.54         6.71        13.58 
TCGA-AX-A05T TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A06H TCGA-AX-A06L TCGA-AX-A1C9 
       19.82        68.32        72.03        27.39        48.62        15.25 
TCGA-AX-A1CE TCGA-AX-A1CJ TCGA-AX-A2H7 TCGA-AX-A2HJ TCGA-AX-A3FW TCGA-AX-A3FX 
       20.05        54.08        33.53        27.32         0.33         0.13 
TCGA-AX-A3GB TCGA-B5-A0JS TCGA-B5-A0JT TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 
       14.47        40.80        43.13        44.71        24.53        22.42 
TCGA-B5-A0KB TCGA-B5-A11G TCGA-B5-A11J TCGA-B5-A11M TCGA-B5-A11N TCGA-B5-A11O 
        4.08       101.13        42.44        36.72        37.71        33.99 
TCGA-B5-A11P TCGA-B5-A11Q TCGA-B5-A11R TCGA-B5-A11S TCGA-B5-A11W TCGA-B5-A11Y 
       36.82        23.08        27.52        21.37        11.15        10.36 
TCGA-B5-A121 TCGA-B5-A1MV TCGA-B5-A1MX TCGA-B5-A3FC TCGA-BG-A0M0 TCGA-BG-A0M2 
        8.52        12.49         5.72        62.14         7.79        10.39 
TCGA-BG-A0M7 TCGA-BG-A0M8 TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC TCGA-BG-A0MH 
       22.95        22.68        25.15        10.72        27.19        44.09 
TCGA-BG-A0MT TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VX TCGA-BG-A0VZ TCGA-BG-A0W1 
        7.89         8.55         4.31        16.11        28.54        29.82 
TCGA-BG-A0YU TCGA-BG-A187 TCGA-BG-A18A TCGA-BG-A18B TCGA-BG-A2L7 TCGA-BK-A0C9 
        9.17         7.59         8.28         5.10         5.82         9.50 
TCGA-BK-A0CA TCGA-BK-A13C TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0UA TCGA-BS-A0UL 
       12.20         6.64        74.30        65.82        83.51         1.18 
TCGA-BS-A0UM TCGA-BS-A0V6 TCGA-BS-A0V7 TCGA-D1-A0ZO TCGA-D1-A0ZQ TCGA-D1-A0ZR 
       72.03        54.25        46.98         2.27         0.26         0.56 
TCGA-D1-A0ZU TCGA-D1-A0ZV TCGA-D1-A101 TCGA-D1-A103 TCGA-D1-A15W TCGA-D1-A161 
       19.00        11.51         1.74        15.78        30.08        29.33 
TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A169 TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E 
       32.09         0.66        29.75        24.46        29.85        29.88 
TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16Q TCGA-D1-A16X TCGA-D1-A174 TCGA-D1-A175 
        2.63        28.41         7.27         3.65        10.65         6.64 
TCGA-D1-A176 TCGA-D1-A17A TCGA-D1-A17B TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17L 
       16.64         0.62         6.97         5.26         1.28        15.09 
TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17S TCGA-D1-A17T TCGA-D1-A17U TCGA-D1-A1NS 
        1.51         1.78        10.72         2.30        13.02         1.41 
TCGA-D1-A1NZ TCGA-D1-A1O0 TCGA-D1-A1O5 TCGA-D1-A1O7 TCGA-D1-A2G5 TCGA-DI-A1BY 
        0.26         0.07        12.39         1.05        41.42        36.62 
TCGA-E6-A2P9 TCGA-EC-A24G TCGA-EO-A1Y7 TCGA-EO-A22Y TCGA-EY-A1GE TCGA-EY-A1GF 
        6.64         1.51         7.99        23.05        18.15        17.49 
TCGA-EY-A1GH TCGA-EY-A1GI TCGA-EY-A1GK TCGA-EY-A1GW TCGA-EY-A1GX TCGA-EY-A1H0 
       17.33        16.64        16.54         8.55         5.46        11.15 
TCGA-FI-A2F4 
       28.93 

$subtype3
TCGA-A5-A0G9 TCGA-A5-A0GI TCGA-A5-A0GP TCGA-A5-A0GV TCGA-A5-A0GW TCGA-A5-A0R7 
       71.18        57.53        35.74        15.95        12.66         1.32 
TCGA-A5-A0VQ TCGA-AJ-A23O TCGA-AJ-A2QN TCGA-AJ-A3BG TCGA-AJ-A3NC TCGA-AJ-A3NE 
        5.82         1.97         2.01         1.02         6.90         2.56 
TCGA-AP-A051 TCGA-AP-A054 TCGA-AP-A05P TCGA-AP-A0LD TCGA-AP-A0LE TCGA-AP-A0LG 
       83.67        23.31         8.55        95.54        98.17        63.16 
TCGA-AP-A0LH TCGA-AP-A0LL TCGA-AP-A0LN TCGA-AP-A0LQ TCGA-AP-A0LT TCGA-AP-A0LV 
       36.36        70.39        65.49        62.66        38.96        12.66 
TCGA-AP-A1DM TCGA-AP-A1DO TCGA-AP-A1DR TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AW-A1PO 
       43.69        31.30        37.18        22.72        10.42         0.56 
TCGA-AX-A05U TCGA-AX-A05Z TCGA-AX-A060 TCGA-AX-A062 TCGA-AX-A063 TCGA-AX-A06D 
       29.65        46.45        35.34        45.96        66.54        12.26 
TCGA-AX-A06J TCGA-AX-A0IS TCGA-AX-A0IZ TCGA-AX-A0J0 TCGA-AX-A0J1 TCGA-AX-A1C4 
       30.02        35.01        43.82        40.08        65.88        13.28 
TCGA-AX-A1C5 TCGA-AX-A1CI TCGA-AX-A1CK TCGA-AX-A1CN TCGA-AX-A2HA TCGA-AX-A2HC 
       19.20        72.56        67.46        25.12        68.71        33.40 
TCGA-AX-A2HD TCGA-AX-A3FZ TCGA-AX-A3G8 TCGA-B5-A0JN TCGA-B5-A0JU TCGA-B5-A0JV 
       40.50         0.20         1.18        67.99        48.76        36.99 
TCGA-B5-A0JY TCGA-B5-A0JZ TCGA-B5-A0K0 TCGA-B5-A0K4 TCGA-B5-A0K6 TCGA-B5-A0K7 
       26.99        22.65        22.32        15.32        14.01        12.23 
TCGA-B5-A0K9 TCGA-B5-A11E TCGA-B5-A11F TCGA-B5-A11I TCGA-B5-A11U TCGA-B5-A11V 
        5.46         8.71       173.56        67.00         8.91         7.59 
TCGA-B5-A11X TCGA-B5-A11Z TCGA-B5-A1MZ TCGA-BG-A0LW TCGA-BG-A0M3 TCGA-BG-A0M4 
       11.08         9.57        15.29         6.38        24.39        15.78 
TCGA-BG-A0MG TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MQ TCGA-BG-A0MS TCGA-BG-A0MU 
       29.46        23.47        33.57        25.02        18.18         7.59 
TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A0W2 TCGA-BG-A186 TCGA-BG-A18C TCGA-BG-A222 
        4.21         7.36        37.84         7.56         5.56         0.46 
TCGA-BK-A0CC TCGA-BK-A13B TCGA-BS-A0T9 TCGA-BS-A0TA TCGA-BS-A0TG TCGA-BS-A0TI 
        6.94        19.00        46.95        23.47        66.87        47.44 
TCGA-BS-A0U5 TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UJ TCGA-BS-A0UT TCGA-BS-A0V4 
       72.46        30.71        85.68         0.89        19.56         1.02 
TCGA-BS-A0VI TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A102 TCGA-D1-A15Z TCGA-D1-A160 
       54.61        39.68        16.83         1.41         1.91         3.68 
TCGA-D1-A163 TCGA-D1-A16N TCGA-D1-A16R TCGA-D1-A16Y TCGA-D1-A177 TCGA-D1-A179 
       30.84        21.04         0.69        17.49        11.41         6.77 
TCGA-D1-A17K TCGA-D1-A17M TCGA-D1-A17R TCGA-D1-A1NY TCGA-D1-A1O8 TCGA-D1-A2G6 
       14.10        10.22        13.15        13.02         3.95         8.48 
TCGA-DI-A0WH TCGA-DI-A1C3 TCGA-E6-A1LX TCGA-E6-A1M0 TCGA-EO-A22R TCGA-EO-A22S 
       13.32        24.30        23.38        14.04        31.96        35.05 
TCGA-EO-A22U TCGA-EY-A1G8 TCGA-EY-A1GD TCGA-EY-A1GL TCGA-EY-A1GR TCGA-EY-A1GU 
       27.12        14.96         8.15        13.94        11.31         8.52 
TCGA-EY-A2OM TCGA-EY-A2OO TCGA-EY-A2OP TCGA-FI-A2D4 
        7.73        25.45        16.54         7.96 

subtype1 subtype2 subtype3 
    0.03     0.07     0.20 
subtype1 subtype2 subtype3 
  187.07   101.13   173.56 
subtype1 subtype2 subtype3 
   12.41    15.25    19.38 
[1] "0.0 - 187.1 (12.4)" "0.1 - 101.1 (15.2)" "0.2 - 173.6 (19.4)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[247] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[277] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[301] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[343] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[361] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[373] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[379] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[385] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[391] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[415] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[427] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[247] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[277] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[301] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[343] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[361] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[373] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[379] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[385] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[391] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[415] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[427] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [13] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[169] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[247] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[253] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[259] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[277] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[295] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[301] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[319] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[331] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[337] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[343] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[355] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[361] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[367] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[373] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[379] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[385] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[391] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[397] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[403] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[415] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[427] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
D9V2, continuous
D9V3, multiclass
D9V4, binary
          cls
clus         0   1
  subtype1  44 115
  subtype2  39 107
  subtype3  44  87
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   44  115
  subtype2   39  107
  subtype3   44   87
     clus
vv    subtype1 subtype2 subtype3
  NO        44       39       44
  YES      115      107       87

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1  20   4
  subtype2 175  28
  subtype3 197   7
subtype1 subtype2 subtype3 
      24      203      204 
subtype1 subtype2 subtype3 
       4       28        7 
$subtype1
TCGA-A5-A0GW TCGA-A5-A0VP TCGA-A5-A2K5 TCGA-AP-A0LS TCGA-AP-A1DH TCGA-AX-A060 
       12.66        30.48         5.29        54.84        59.70        35.34 
TCGA-AX-A063 TCGA-AX-A2HA TCGA-B5-A11E TCGA-B5-A1MW TCGA-B5-A1MX TCGA-BG-A0LX 
       66.54        68.71         8.71         7.23         5.72         8.28 
TCGA-BG-A0M7 TCGA-BG-A0MQ TCGA-BG-A222 TCGA-BS-A0U9 TCGA-BS-A0UV TCGA-BS-A0V4 
       22.95        25.02         0.46        57.50         4.90         1.02 
TCGA-DI-A2QU TCGA-EY-A1G8 TCGA-EY-A1GC TCGA-EY-A215 TCGA-FI-A2D4 TCGA-FI-A2D5 
       31.10        14.96         4.54        12.85         7.96        14.01 

$subtype2
TCGA-A5-A0G1 TCGA-A5-A0G2 TCGA-A5-A0G3 TCGA-A5-A0G5 TCGA-A5-A0GA TCGA-A5-A0GH 
      106.88       133.25        35.47        25.97        17.85        54.94 
TCGA-A5-A0GP TCGA-A5-A0GR TCGA-A5-A0R7 TCGA-A5-A0VQ TCGA-A5-A1OG TCGA-A5-A2K2 
       35.74        25.64         1.32         5.82        11.44        91.00 
TCGA-A5-A2K3 TCGA-A5-A2K4 TCGA-A5-A2K7 TCGA-A5-A3LO TCGA-A5-A3LP TCGA-AJ-A23M 
       46.32        28.64         5.13         7.33         7.56         1.02 
TCGA-AJ-A23O TCGA-AJ-A2QM TCGA-AJ-A2QN TCGA-AJ-A3BD TCGA-AJ-A3BF TCGA-AJ-A3BG 
        1.97         1.02         2.01         0.49         1.12         1.02 
TCGA-AJ-A3EJ TCGA-AJ-A3EK TCGA-AJ-A3EL TCGA-AJ-A3EM TCGA-AJ-A3IA TCGA-AJ-A3NE 
        1.64         2.10         2.14         1.64         0.92         2.56 
TCGA-AJ-A3NF TCGA-AJ-A3NG TCGA-AJ-A3OJ TCGA-AP-A053 TCGA-AP-A054 TCGA-AP-A059 
        1.35         1.71         1.94         5.95        23.31         8.22 
TCGA-AP-A0L8 TCGA-AP-A0L9 TCGA-AP-A0LD TCGA-AP-A0LE TCGA-AP-A0LF TCGA-AP-A0LG 
       48.79       113.19        95.54        98.17         3.39        63.16 
TCGA-AP-A0LH TCGA-AP-A0LI TCGA-AP-A0LT TCGA-AP-A1DK TCGA-AP-A1DM TCGA-AP-A1DO 
       36.36        85.55        38.96        54.25        43.69        31.30 
TCGA-AP-A1DQ TCGA-AP-A1DR TCGA-AP-A1E4 TCGA-AW-A1PO TCGA-AX-A05S TCGA-AX-A06D 
       38.93        37.18         8.78         0.56        13.58        12.26 
TCGA-AX-A06F TCGA-AX-A0IU TCGA-AX-A0IW TCGA-AX-A0J0 TCGA-AX-A0J1 TCGA-AX-A1C5 
       51.09        28.54        37.74        40.08        65.88        19.20 
TCGA-AX-A1C7 TCGA-AX-A1C8 TCGA-AX-A1CA TCGA-AX-A1CC TCGA-AX-A1CF TCGA-AX-A1CI 
       16.93        13.55        20.28        12.43        76.83        72.56 
TCGA-AX-A1CN TCGA-AX-A1CP TCGA-AX-A1CR TCGA-AX-A2H2 TCGA-AX-A2H4 TCGA-AX-A2H5 
       25.12        36.39        11.08         4.77        30.08        71.24 
TCGA-AX-A2H8 TCGA-AX-A2HC TCGA-AX-A2HD TCGA-AX-A2HF TCGA-AX-A2HG TCGA-AX-A2HH 
       61.18        33.40        40.50        16.08        21.70        17.72 
TCGA-AX-A2HK TCGA-AX-A2IN TCGA-AX-A2IO TCGA-AX-A3FS TCGA-AX-A3FT TCGA-AX-A3FZ 
        2.96        31.10        38.66         0.23         0.10         0.20 
TCGA-AX-A3G3 TCGA-AX-A3G4 TCGA-AX-A3G8 TCGA-AX-A3G9 TCGA-AX-A3GI TCGA-B5-A0JN 
        0.03         0.13         1.18         8.35         0.13        67.99 
TCGA-B5-A0JU TCGA-B5-A0JY TCGA-B5-A0JZ TCGA-B5-A0K0 TCGA-B5-A0K3 TCGA-B5-A0K4 
       48.76        26.99        22.65        22.32        23.01        15.32 
TCGA-B5-A0K8 TCGA-B5-A0K9 TCGA-B5-A11H TCGA-B5-A11I TCGA-B5-A11U TCGA-B5-A11X 
       17.82         5.46        76.18        67.00         8.91        11.08 
TCGA-B5-A1MR TCGA-B5-A1MU TCGA-B5-A1MY TCGA-B5-A1N2 TCGA-BG-A0M4 TCGA-BG-A0M6 
      187.07        50.86        11.87        12.79        15.78         7.92 
TCGA-BG-A0YV TCGA-BG-A18C TCGA-BG-A221 TCGA-BG-A2AE TCGA-BK-A0CC TCGA-BK-A139 
        6.12         5.56         1.51         0.53         6.94         7.86 
TCGA-BK-A26L TCGA-BS-A0T9 TCGA-BS-A0TE TCGA-BS-A0TJ TCGA-BS-A0UF TCGA-BS-A0UT 
        7.66        46.95         4.80        49.78        60.59        19.56 
TCGA-BS-A0V8 TCGA-BS-A0VI TCGA-D1-A0ZP TCGA-D1-A0ZS TCGA-D1-A0ZZ TCGA-D1-A15V 
       49.55        54.61        22.68         4.83        12.39        33.27 
TCGA-D1-A15X TCGA-D1-A15Z TCGA-D1-A163 TCGA-D1-A167 TCGA-D1-A168 TCGA-D1-A16G 
       29.88         1.91        30.84        15.72        30.02        27.42 
TCGA-D1-A16I TCGA-D1-A16J TCGA-D1-A16N TCGA-D1-A16S TCGA-D1-A16V TCGA-D1-A16Y 
       11.47        24.39        21.04         7.82         1.41        17.49 
TCGA-D1-A177 TCGA-D1-A179 TCGA-D1-A17K TCGA-D1-A17M TCGA-D1-A1NU TCGA-D1-A1NW 
       11.41         6.77        14.10        10.22        10.22         0.72 
TCGA-D1-A1NY TCGA-D1-A1O8 TCGA-D1-A2G0 TCGA-D1-A2G6 TCGA-D1-A2G7 TCGA-D1-A3DA 
       13.02         3.95         3.52         8.48        44.88         0.26 
TCGA-D1-A3DG TCGA-D1-A3DH TCGA-DI-A0WH TCGA-DI-A1BU TCGA-DI-A1NN TCGA-DI-A1NO 
        4.27         4.11        13.32        33.04        31.00         9.37 
TCGA-DI-A2QT TCGA-DI-A2QY TCGA-E6-A1LX TCGA-E6-A1LZ TCGA-E6-A1M0 TCGA-E6-A2P8 
       12.39        91.96        23.38        42.38        14.04         2.37 
TCGA-EC-A1QX TCGA-EO-A1Y5 TCGA-EO-A1Y8 TCGA-EO-A22R TCGA-EO-A22S TCGA-EO-A22T 
        2.17        10.92        10.78        31.96        35.05        33.01 
TCGA-EO-A22U TCGA-EO-A22X TCGA-EO-A2CG TCGA-EY-A1G7 TCGA-EY-A1GD TCGA-EY-A1GJ 
       27.12        30.54        22.09         6.21         8.15        16.77 
TCGA-EY-A1GL TCGA-EY-A1GM TCGA-EY-A1GO TCGA-EY-A1GP TCGA-EY-A1GR TCGA-EY-A1GS 
       13.94         6.87        11.84        11.44        11.31         9.34 
TCGA-EY-A1GT TCGA-EY-A1GU TCGA-EY-A1GV TCGA-EY-A210 TCGA-EY-A212 TCGA-EY-A214 
        9.86         8.52         8.45         5.42         3.58         8.28 
TCGA-EY-A2OM TCGA-EY-A2ON TCGA-EY-A2OO TCGA-EY-A2OP TCGA-EY-A2OQ TCGA-FI-A2CX 
        7.73         5.62        25.45        16.54         9.63        40.01 
TCGA-FI-A2CY TCGA-FI-A2D0 TCGA-FI-A2D2 TCGA-FI-A2D6 TCGA-FI-A2EU TCGA-FI-A2EW 
       34.98        33.99        36.00         8.98        84.07        59.01 
TCGA-FI-A2EX TCGA-FI-A2EY TCGA-FI-A2F8 TCGA-FI-A2F9 TCGA-H5-A2HR 
        9.07        29.03        25.02        26.01         1.74 

$subtype3
TCGA-A5-A0G9 TCGA-A5-A0GD TCGA-A5-A0GE TCGA-A5-A0GG TCGA-A5-A0GI TCGA-A5-A0GJ 
       71.18         3.19        89.33        82.72        57.53        47.57 
TCGA-A5-A0GM TCGA-A5-A0GQ TCGA-A5-A0GU TCGA-A5-A0GV TCGA-A5-A0GX TCGA-A5-A0R6 
       47.61        38.37        16.27        15.95        30.38        12.13 
TCGA-A5-A0R8 TCGA-A5-A0R9 TCGA-A5-A0RA TCGA-A5-A0VO TCGA-A5-A1OF TCGA-A5-A1OJ 
        4.11         9.67        18.25         4.21         7.92         9.60 
TCGA-A5-A1OK TCGA-AJ-A2QK TCGA-AJ-A2QL TCGA-AJ-A2QO TCGA-AJ-A3BI TCGA-AJ-A3BK 
        7.99         0.39         1.61         2.99         2.01         1.68 
TCGA-AJ-A3I9 TCGA-AJ-A3NC TCGA-AJ-A3OK TCGA-AP-A051 TCGA-AP-A05O TCGA-AP-A05P 
        1.28         6.90         4.67        83.67        12.20         8.55 
TCGA-AP-A0LJ TCGA-AP-A0LL TCGA-AP-A0LM TCGA-AP-A0LN TCGA-AP-A0LP TCGA-AP-A0LQ 
       31.73        70.39        27.12        65.49        61.64        62.66 
TCGA-AP-A0LV TCGA-AP-A1DP TCGA-AP-A1DV TCGA-AP-A1E0 TCGA-AP-A1E1 TCGA-AP-A1E3 
       12.66        35.54         6.71        22.72        10.42        17.19 
TCGA-AX-A05T TCGA-AX-A05U TCGA-AX-A05W TCGA-AX-A05Y TCGA-AX-A05Z TCGA-AX-A062 
       19.82        29.65        68.32        72.03        46.45        45.96 
TCGA-AX-A06B TCGA-AX-A06H TCGA-AX-A06J TCGA-AX-A06L TCGA-AX-A0IS TCGA-AX-A0IZ 
       53.88        27.39        30.02        48.62        35.01        43.82 
TCGA-AX-A1C4 TCGA-AX-A1C9 TCGA-AX-A1CE TCGA-AX-A1CJ TCGA-AX-A1CK TCGA-AX-A2H7 
       13.28        15.25        20.05        54.08        67.46        33.53 
TCGA-AX-A2HJ TCGA-AX-A3FW TCGA-AX-A3FX TCGA-AX-A3G1 TCGA-AX-A3GB TCGA-B5-A0JS 
       27.32         0.33         0.13        20.52        14.47        40.80 
TCGA-B5-A0JT TCGA-B5-A0JV TCGA-B5-A0JX TCGA-B5-A0K1 TCGA-B5-A0K2 TCGA-B5-A0K6 
       43.13        36.99        44.71        24.53        22.42        14.01 
TCGA-B5-A0K7 TCGA-B5-A0KB TCGA-B5-A11F TCGA-B5-A11G TCGA-B5-A11J TCGA-B5-A11L 
       12.23         4.08       173.56       101.13        42.44        45.90 
TCGA-B5-A11M TCGA-B5-A11N TCGA-B5-A11O TCGA-B5-A11P TCGA-B5-A11Q TCGA-B5-A11R 
       36.72        37.71        33.99        36.82        23.08        27.52 
TCGA-B5-A11S TCGA-B5-A11V TCGA-B5-A11W TCGA-B5-A11Y TCGA-B5-A11Z TCGA-B5-A121 
       21.37         7.59        11.15        10.36         9.57         8.52 
TCGA-B5-A1MV TCGA-B5-A1MZ TCGA-B5-A3FC TCGA-BG-A0LW TCGA-BG-A0M0 TCGA-BG-A0M2 
       12.49        15.29        62.14         6.38         7.79        10.39 
TCGA-BG-A0M3 TCGA-BG-A0M8 TCGA-BG-A0M9 TCGA-BG-A0MA TCGA-BG-A0MC TCGA-BG-A0MG 
       24.39        22.68        25.15        10.72        27.19        29.46 
TCGA-BG-A0MH TCGA-BG-A0MI TCGA-BG-A0MO TCGA-BG-A0MS TCGA-BG-A0MT TCGA-BG-A0MU 
       44.09        23.47        33.57        18.18         7.89         7.59 
TCGA-BG-A0RY TCGA-BG-A0VT TCGA-BG-A0VV TCGA-BG-A0VW TCGA-BG-A0VX TCGA-BG-A0VZ 
        4.21         7.36         8.55         4.31        16.11        28.54 
TCGA-BG-A0W1 TCGA-BG-A0W2 TCGA-BG-A0YU TCGA-BG-A186 TCGA-BG-A187 TCGA-BG-A18A 
       29.82        37.84         9.17         7.56         7.59         8.28 
TCGA-BG-A18B TCGA-BG-A2L7 TCGA-BK-A0C9 TCGA-BK-A0CA TCGA-BK-A13B TCGA-BK-A13C 
        5.10         5.82         9.50        12.20        19.00         6.64 
TCGA-BS-A0TA TCGA-BS-A0TC TCGA-BS-A0TD TCGA-BS-A0TG TCGA-BS-A0TI TCGA-BS-A0U5 
       23.47        74.30        65.82        66.87        47.44        72.46 
TCGA-BS-A0U7 TCGA-BS-A0U8 TCGA-BS-A0UA TCGA-BS-A0UJ TCGA-BS-A0UL TCGA-BS-A0UM 
       30.71        85.68        83.51         0.89         1.18        72.03 
TCGA-BS-A0V6 TCGA-BS-A0V7 TCGA-BS-A0WQ TCGA-D1-A0ZN TCGA-D1-A0ZO TCGA-D1-A0ZQ 
       54.25        46.98        39.68        16.83         2.27         0.26 
TCGA-D1-A0ZR TCGA-D1-A0ZU TCGA-D1-A0ZV TCGA-D1-A101 TCGA-D1-A102 TCGA-D1-A103 
        0.56        19.00        11.51         1.74         1.41        15.78 
TCGA-D1-A15W TCGA-D1-A160 TCGA-D1-A161 TCGA-D1-A162 TCGA-D1-A165 TCGA-D1-A169 
       30.08         3.68        29.33        32.09         0.66        29.75 
TCGA-D1-A16B TCGA-D1-A16D TCGA-D1-A16E TCGA-D1-A16F TCGA-D1-A16O TCGA-D1-A16Q 
       24.46        29.85        29.88         2.63        28.41         7.27 
TCGA-D1-A16R TCGA-D1-A16X TCGA-D1-A174 TCGA-D1-A175 TCGA-D1-A176 TCGA-D1-A17A 
        0.69         3.65        10.65         6.64        16.64         0.62 
TCGA-D1-A17B TCGA-D1-A17C TCGA-D1-A17D TCGA-D1-A17F TCGA-D1-A17H TCGA-D1-A17L 
        6.97         0.03         5.26         1.28        14.93        15.09 
TCGA-D1-A17N TCGA-D1-A17Q TCGA-D1-A17R TCGA-D1-A17S TCGA-D1-A17T TCGA-D1-A17U 
        1.51         1.78        13.15        10.72         2.30        13.02 
TCGA-D1-A1NS TCGA-D1-A1NX TCGA-D1-A1NZ TCGA-D1-A1O0 TCGA-D1-A1O5 TCGA-D1-A1O7 
        1.41        13.12         0.26         0.07        12.39         1.05 
TCGA-D1-A2G5 TCGA-DI-A1BY TCGA-DI-A1C3 TCGA-E6-A2P9 TCGA-EC-A24G TCGA-EO-A1Y7 
       41.42        36.62        24.30         6.64         1.51         7.99 
TCGA-EO-A22Y TCGA-EO-A2CH TCGA-EY-A1GE TCGA-EY-A1GF TCGA-EY-A1GH TCGA-EY-A1GI 
       23.05        17.49        18.15        17.49        17.33        16.64 
TCGA-EY-A1GK TCGA-EY-A1GQ TCGA-EY-A1GW TCGA-EY-A1GX TCGA-EY-A1H0 TCGA-FI-A2F4 
       16.54        11.18         8.55         5.46        11.15        28.93 

subtype1 subtype2 subtype3 
    0.46     0.03     0.03 
subtype1 subtype2 subtype3 
   68.71   187.07   173.56 
subtype1 subtype2 subtype3 
   13.43    14.04    16.59 
[1] "0.5 - 68.7 (13.4)"  "0.0 - 187.1 (14.0)" "0.0 - 173.6 (16.6)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[277] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[295] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[385] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[391] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[277] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[295] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[385] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[391] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [25] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [49] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[205] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[277] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[283] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[295] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[319] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[343] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[361] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[385] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[391] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[415] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
D10V2, continuous
D10V3, multiclass
D10V4, binary
          cls
clus         0   1
  subtype1  10  14
  subtype2  64 143
  subtype3  53 152
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   14
  subtype2   64  143
  subtype3   53  152
     clus
vv    subtype1 subtype2 subtype3
  NO        10       64       53
  YES       14      143      152
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                     "HISTOLOGICAL.TYPE" 
                                      V4 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
