Lung Adenocarcinoma: Mutation Analysis (MutSig v2.0)
(primary solid tumor cohort)
Maintained by Dan DiCara (Broad Institute)
- Overview
+ Introduction
- Summary
  • MAF used for this analysis:LUAD-TP.final_analysis_set.maf

  • Significantly mutated genes (q ≤ 0.1): 215

  • Mutations seen in COSMIC: 515

  • Significantly mutated genes in COSMIC territory: 24

  • Genes with clustered mutations (≤ 3 aa apart): 383

  • Significantly mutated genesets: 16

  • Significantly mutated genesets: (excluding sig. mutated genes):0

Mutation Preprocessing
  • Read 229 MAFs of type "Broad"

  • Total number of mutations in input MAFs: 251233

  • After removing 79 mutations outside chr1-24: 251154

  • After removing 1211 blacklisted mutations: 249943

  • After removing 144408 noncoding mutations: 105535

  • After collapsing adjacent/redundant mutations: 94067

Mutation Filtering
  • Number of mutations before filtering: 94067

  • After removing 1293 mutations outside gene set: 92774

  • After removing 398 mutations outside category set: 92376

- Results
+ Breakdown of Mutations by Type
+ Breakdown of Mutation Rates by Category Type
+ Target Coverage for Each Individual
+ Distribution of Mutation Counts, Coverage, and Mutation Rates Across Samples
+ CoMut Plot
+ Significantly Mutated Genes
+ COSMIC analyses
+ Clustered Mutations
+ Geneset Analyses
+ Methods & Data