GDAC_MergedClusteringPipeline Execution Log 4:29 PM Mon Mar 4, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2661264/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660773/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile BLCA-TP
GDAC_mergedClustering1 PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660646/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
GDAC_mergedClustering1 PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/BLCA-TP/2660645/3.GDAC_selectBestcluster.Finished/BLCA-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660653/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/BLCA-TP/2660650/3.GDAC_selectBestcluster.Finished/BLCA-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660659/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/BLCA-TP/2660658/3.GDAC_selectBestcluster.Finished/BLCA-TP.bestclus.txt
Execution Times:
Submitted: 16:29:08 04-03-13
Completed:
Elapsed: 00 hrs 00 mins 47 secs

step 1. GDAC_mergedClustering [id: 334311] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2661264/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660773/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
mergedfile BLCA-TP
PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660646/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/BLCA-TP/2660645/3.GDAC_selectBestcluster.Finished/BLCA-TP.bestclus.txt
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660653/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/BLCA-TP/2660650/3.GDAC_selectBestcluster.Finished/BLCA-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/BLCA-TP/2660659/3.GDAC_CNMFselectcluster.Finished/BLCA-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/BLCA-TP/2660658/3.GDAC_selectBestcluster.Finished/BLCA-TP.bestclus.txt
Output Files:
 BLCA-TP.mergedcluster.txt
 BLCA-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 16:29:08 04-03-13
Completed: 16:29:22 04-03-13
Elapsed: 00 hrs 00 mins 14 secs

step 2. GDAC_mergedReport [id: 334312]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster BLCA-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 16:29:08 04-03-13
Completed: 16:29:54 04-03-13
Elapsed: 00 hrs 00 mins 46 secs