
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.47.4101/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.47.4101/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/351806/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA-TP/2585709/1.GDAC_clinicalDataPicker.Finished/BLCA-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BLCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=BLCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=128, in cluster file=150, common to both=125
[1]  63 125
[1] "Amp Peak  1(1p34.2) mutation analysis"
[1] 3
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           36                            89 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           36                            89 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           63                            62 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           63                            62 
[1] "Amp Peak  3(1q23.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                           67                            58 
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                           67                            58 
[1] "Amp Peak  4(3p25.2) mutation analysis"
[1] 3
  AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE 
                           60                            65 
  AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE 
                           60                            65 
[1] "Amp Peak  5(3q26.32) mutation analysis"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                            73                             52 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                            73                             52 
[1] "Amp Peak  6(4p16.3) mutation analysis"
[1] 3
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           26                            99 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           26                            99 
[1] "Amp Peak  7(4q13.3) mutation analysis"
[1] 3
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           17                           108 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           17                           108 
[1] "Amp Peak  8(5p15.1) mutation analysis"
[1] 3
  AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE 
                           60                            65 
  AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE 
                           60                            65 
[1] "Amp Peak  9(6p22.3) mutation analysis"
[1] 3
  AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE 
                           49                            76 
  AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE 
                           49                            76 
[1] "Amp Peak 10(6q12) mutation analysis"
[1] 3
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                         22                         103 
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                         22                         103 
[1] "Amp Peak 11(6q21) mutation analysis"
[1] 3
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                         13                         112 
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                         13                         112 
[1] "Amp Peak 12(7p11.2) mutation analysis"
[1] 3
  AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE 
                           64                            61 
  AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE 
                           64                            61 
[1] "Amp Peak 13(8p11.23) mutation analysis"
[1] 3
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                            43                             82 
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                            43                             82 
[1] "Amp Peak 14(8p11.21) mutation analysis"
[1] 3
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                            41                             84 
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                            41                             84 
[1] "Amp Peak 15(8q22.3) mutation analysis"
[1] 3
  AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE 
                           76                            49 
  AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE 
                           76                            49 
[1] "Amp Peak 16(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                            75                             50 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                            75                             50 
[1] "Amp Peak 17(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            53                             72 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            53                             72 
[1] "Amp Peak 18(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                            47                             78 
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                            47                             78 
[1] "Amp Peak 19(12q15) mutation analysis"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          41                           84 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          41                           84 
[1] "Amp Peak 20(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            44                             81 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            44                             81 
[1] "Amp Peak 21(16p12.1) mutation analysis"
[1] 3
  AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE 
                            34                             91 
  AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE 
                            34                             91 
[1] "Amp Peak 22(17q11.2) mutation analysis"
[1] 3
  AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE 
                            58                             67 
  AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE 
                            58                             67 
[1] "Amp Peak 23(17q12) mutation analysis"
[1] 3
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                          53                           72 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                          53                           72 
[1] "Amp Peak 24(19q12) mutation analysis"
[1] 3
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          52                           73 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          52                           73 
[1] "Amp Peak 25(19q13.43) mutation analysis"
[1] 3
  AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE 
                             52                              73 
  AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE 
                             52                              73 
[1] "Amp Peak 26(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                             87                              38 
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                             87                              38 
[1] "Amp Peak 27(22q11.23) mutation analysis"
[1] 3
  AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE 
                             32                              93 
  AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE 
                             32                              93 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            23                            102 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            23                            102 
[1] "Del Peak  2(1q32.1) mutation analysis"
[1] 3
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                           24                           101 
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                           24                           101 
[1] "Del Peak  3(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           38                            87 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           38                            87 
[1] "Del Peak  4(2q34) mutation analysis"
[1] 3
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                         54                          71 
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                         54                          71 
[1] "Del Peak  5(2q37.1) mutation analysis"
[1] 3
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                           65                            60 
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                           65                            60 
[1] "Del Peak  6(3p21.31) mutation analysis"
[1] 3
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            40                             85 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            40                             85 
[1] "Del Peak  7(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           41                            84 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           41                            84 
[1] "Del Peak  8(3p12.3) mutation analysis"
[1] 3
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                           36                            89 
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                           36                            89 
[1] "Del Peak  9(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           49                            76 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           49                            76 
[1] "Del Peak 10(4q34.2) mutation analysis"
[1] 3
  DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE 
                           55                            70 
  DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE 
                           55                            70 
[1] "Del Peak 11(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           64                            61 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           64                            61 
[1] "Del Peak 12(5q35.1) mutation analysis"
[1] 3
  DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE 
                           62                            63 
  DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE 
                           62                            63 
[1] "Del Peak 13(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE 
                           34                            91 
  DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE 
                           34                            91 
[1] "Del Peak 14(6q21) mutation analysis"
[1] 3
  DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE 
                         51                          74 
  DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE 
                         51                          74 
[1] "Del Peak 15(6q27) mutation analysis"
[1] 3
  DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE 
                         53                          72 
  DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE 
                         53                          72 
[1] "Del Peak 16(8p23.3) mutation analysis"
[1] 3
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                           65                            60 
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                           65                            60 
[1] "Del Peak 17(8p21.1) mutation analysis"
[1] 3
  DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE 
                           69                            56 
  DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE 
                           69                            56 
[1] "Del Peak 18(9p23) mutation analysis"
[1] 3
  DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE 
                         57                          68 
  DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE 
                         57                          68 
[1] "Del Peak 19(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                           73                            52 
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                           73                            52 
[1] "Del Peak 20(10p12.1) mutation analysis"
[1] 3
  DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE 
                            24                            101 
  DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE 
                            24                            101 
[1] "Del Peak 21(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                             53                              72 
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                             53                              72 
[1] "Del Peak 22(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                            62                             63 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                            62                             63 
[1] "Del Peak 23(11q25) mutation analysis"
[1] 3
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                          39                           86 
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                          39                           86 
[1] "Del Peak 24(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            48                             77 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            48                             77 
[1] "Del Peak 25(14q12) mutation analysis"
[1] 3
  DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE 
                          35                           90 
  DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE 
                          35                           90 
[1] "Del Peak 26(14q32.31) mutation analysis"
[1] 3
  DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE 
                             35                              90 
  DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE 
                             35                              90 
[1] "Del Peak 27(15q13.1) mutation analysis"
[1] 3
  DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE 
                            44                             81 
  DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE 
                            44                             81 
[1] "Del Peak 28(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            44                             81 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            44                             81 
[1] "Del Peak 29(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                            34                             91 
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                            34                             91 
[1] "Del Peak 30(17p12) mutation analysis"
[1] 3
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                          64                           61 
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                          64                           61 
[1] "Del Peak 31(18q23) mutation analysis"
[1] 3
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                          54                           71 
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                          54                           71 
[1] "Del Peak 32(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            48                             77 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            48                             77 
[1] "Del Peak 33(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             48                              77 
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             48                              77 
[1] "Del Peak 34(Xp11.3) mutation analysis"
[1] 3
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           36                            89 
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           36                            89 
[1] "Del Peak 35(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                            30                             95 
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                            30                             95 
[1] "Del Peak 36(Xq22.3) mutation analysis"
[1] 3
  DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE 
                           28                            97 
  DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE 
                           28                            97 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "RADIATIONTHERAPY"                      
[11] "KARNOFSKYPERFORMANCESCORE"             
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "NUMBERPACKYEARSSMOKED"                 
[14] "STOPPEDSMOKINGYEAR"                    
[15] "TOBACCOSMOKINGHISTORYINDICATOR"        
[16] "DISTANT.METASTASIS"                    
[17] "LYMPH.NODE.METASTASIS"                 
[18] "NUMBER.OF.LYMPH.NODES"                 
[19] "TUMOR.STAGECODE"                       
[20] "NEOPLASM.DISEASESTAGE"                 
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 125 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
         389           NA           NA           NA           NA          363 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
          NA           NA           NA           NA           NA          179 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
         111           NA           NA           59           61           14 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A3MF TCGA-CF-A3MG TCGA-CF-A3MH TCGA-CF-A3MI 
          13           21           NA           NA           NA           NA 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
          NA           NA          219          166          158          246 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
          77           NA          955          273          214          271 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        3616         3056          218          178          202           55 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
         322           NA         2291           67          121          238 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
          NA          319         1151          168          350           NA 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3X6 TCGA-E7-A3Y1 
         252           NA         3989         1108           NA            3 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
         268          253           NA          209           NA          336 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
         272          242          974          334          186          207 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U 
          NA          138           NA           NA           59          208 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
          71         1518          806          172           NA          997 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
         525          214           NA           25           87           68 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
          40          137           42           31           76           33 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
         234           64           95          177          194          230 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QG 
         133          195          187          173          232           NA 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
         237          125          202          194          162           46 
TCGA-H4-A2HQ TCGA-HQ-A2OE TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
         204           NA          265          104          141 
Variable 1:'AGE':	nDistinctValues=43,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=30,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=84,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'NUMBERPACKYEARSSMOKED':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'STOPPEDSMOKINGYEAR':	nDistinctValues=35,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'DISTANT.METASTASIS':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'LYMPH.NODE.METASTASIS':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'TUMOR.STAGECODE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=15,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                            "GENDER"                        
 [3] "KARNOFSKY.PERFORMANCE.SCORE"    "NUMBERPACKYEARSSMOKED"         
 [5] "STOPPEDSMOKINGYEAR"             "TOBACCOSMOKINGHISTORYINDICATOR"
 [7] "DISTANT.METASTASIS"             "LYMPH.NODE.METASTASIS"         
 [9] "NUMBER.OF.LYMPH.NODES"          "TUMOR.STAGECODE"               
[11] "NEOPLASM.DISEASESTAGE"         
[1] "TUMOR.?STAGE" "10"          
[1] "stage2"
vv
 T1  T2 T2A T2B  T3 T3A T3B  T4 T4A 
  1   6   4  19  24  21  18   2  17 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 125 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=43, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=33, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=35, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=5, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=3, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=5, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=13, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p34.2) mutation analysis
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P34.2) MUTATED   25 10
  AMP PEAK  1(1P34.2) WILD-TYPE 62 21
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           35                            83 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                           10                            21 
$`AMP PEAK  1(1P34.2) MUTATED`
TCGA-BT-A20J TCGA-BT-A20R TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 
       19.00         5.06         5.88         3.65         8.98         1.94 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AB 
        0.43        12.92         5.19         2.53         8.98         8.91 
TCGA-DK-A2I1 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IU 
       10.59         3.98         7.82         8.22         5.52        11.51 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SR TCGA-FD-A3SS 
        8.94         4.01        32.02        10.98        19.79         1.94 
TCGA-G2-A2EL TCGA-G2-A3IE TCGA-GC-A3OO TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 
       26.93        20.12         1.32         1.02         1.08         7.69 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A40G TCGA-K4-A3WV 
        5.82         6.38         6.41         5.33         4.64 

$`AMP PEAK  1(1P34.2) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
       26.10        12.16        17.85        19.46        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR 
        5.06         8.35         8.25         4.64         2.01         0.46 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A5 
        0.69         4.90         7.20         5.46         8.09         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       31.40         7.04       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ 
        6.64         1.81         7.76        75.32         2.20        10.49 
TCGA-DK-A3IS TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC 
       37.84         9.67         8.28        10.55       131.15        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 
        0.10         8.81         8.32         6.87        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
        7.96         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO 
        6.84         2.33        49.91        26.50         5.65        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB 
       17.26         7.04         0.82         2.86         2.24         4.50 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GV-A3JV 
        1.38         2.50         2.10         3.12         7.56         4.37 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         1.51         6.71         8.71         3.42 

  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                         0.43                          0.10 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                        32.02                        131.15 
  AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE 
                         6.38                          7.04 
[1] "0.4 - 32.0 (6.4)"  "0.1 - 131.2 (7.0)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  1(1P34.2) MUTATED"   "AMP PEAK  1(1P34.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  1(1P34.2) MUTATED" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  1(1P34.2) WILD-TYPE" "AMP PEAK  1(1P34.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  1(1P34.2) WILD-TYPE"   "AMP PEAK  1(1P34.2) MUTATED" 
[1] "hr=" "1.3"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P34.2) MUTATED     12   24
  AMP PEAK  1(1P34.2) WILD-TYPE   21   68
        clus
vv       AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  FEMALE                          12                            21
  MALE                            24                            68
D1V4, continuous
D1V5, continuous
D1V6, continuous
D1V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  1(1P34.2) MUTATED   20  2 14
  AMP PEAK  1(1P34.2) WILD-TYPE 53  2 33
D1V8, multiclass
    clus
vv   AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  M0                          20                            53
  M1                           2                             2
  MX                          14                            33
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  1(1P34.2) MUTATED   17  7  7  1  3
  AMP PEAK  1(1P34.2) WILD-TYPE 54  7 17  3  7
D1V9, multiclass
D1V10, continuous
D1V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  1(1P34.2) MUTATED         0       12         7       15
  AMP PEAK  1(1P34.2) WILD-TYPE       1       23        33       29
D1V12, multiclass
           clus
vv          AMP PEAK  1(1P34.2) MUTATED AMP PEAK  1(1P34.2) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           12                            23
  STAGE III                           7                            33
  STAGE IV                           15                            29

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q21.3) MUTATED   43 16
  AMP PEAK  2(1Q21.3) WILD-TYPE 44 15
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           59                            59 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           16                            15 
$`AMP PEAK  2(1Q21.3) MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20T 
        2.66         6.74        19.00        26.10         5.06        14.89 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 
        5.06         8.35         5.88         3.65         8.98         1.94 
TCGA-CF-A1HS TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 
        0.43         5.46         5.19         2.53         2.14         8.98 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK 
      118.88       100.47         1.81        10.59         7.76         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IU TCGA-E5-A2PC 
        3.98         7.82         8.22         5.52        11.51        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO 
        0.10         4.01        32.02        10.98         6.12         5.49 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY 
       19.79         1.94         2.33        17.26        20.12         0.82 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.32         4.50         2.50         1.08         7.69         2.10 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        5.82         6.38         4.37         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G TCGA-K4-A3WS 
        7.63         4.11         6.38         5.33         8.71 

$`AMP PEAK  2(1Q21.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
       12.79         7.33         6.58        11.93        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR 
       19.46         8.61         8.25         4.64         2.01         0.46 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A6 
        0.69        12.92         4.90         7.20         8.09        31.40 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I6 
        7.04         8.91         7.17         5.85         6.64        75.32 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        37.84         9.67         8.28        10.55       131.15 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         8.94         6.87        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43U TCGA-G2-A2EF 
        7.96         6.81         4.54        46.78         6.84        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB TCGA-GC-A3BM 
       26.50         5.65        26.93        32.78         7.04         2.86 
TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GV-A3QH 
        2.24         1.38         1.02         3.12         7.56         7.79 
TCGA-GV-A3QK TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV 
        6.64         1.51         6.71         3.42         4.64 

  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                         0.10                          0.46 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                       118.88                        131.15 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                         5.82                          7.79 
[1] "0.1 - 118.9 (5.8)" "0.5 - 131.2 (7.8)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
[1] "hr=" "1.5"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     16   47
  AMP PEAK  2(1Q21.3) WILD-TYPE   17   45
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                          16                            17
  MALE                            47                            45
D2V4, continuous
D2V5, continuous
D2V6, continuous
D2V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  2(1Q21.3) MUTATED   33  3 26
  AMP PEAK  2(1Q21.3) WILD-TYPE 40  1 21
D2V8, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  M0                          33                            40
  M1                           3                             1
  MX                          26                            21
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  2(1Q21.3) MUTATED   28 10 15  4  5
  AMP PEAK  2(1Q21.3) WILD-TYPE 43  4  9  0  5
D2V9, multiclass
D2V10, continuous
D2V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  2(1Q21.3) MUTATED         0       18        15       28
  AMP PEAK  2(1Q21.3) WILD-TYPE       1       17        25       16
D2V12, multiclass
           clus
vv          AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           18                            17
  STAGE III                          15                            25
  STAGE IV                           28                            16

Clustering(3) Variable = Amp Peak  3(1q23.3) mutation analysis
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(1Q23.3) MUTATED   48 15
  AMP PEAK  3(1Q23.3) WILD-TYPE 39 16
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                           63                            55 
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                           15                            16 
$`AMP PEAK  3(1Q23.3) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20T 
       12.79         2.66         6.74        19.00        26.10        14.89 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
        1.94         0.43         7.20         5.46         2.53         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        8.98       118.88       100.47        10.59         7.76        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82         8.22        37.84         5.52 
TCGA-DK-A3IU TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3NA 
       11.51        36.43         0.10         8.32         4.01        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS 
       10.98         6.12         5.49         4.54        19.79         1.94 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3WC TCGA-GC-A3YS 
        2.33        49.91         0.82         1.32         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW 
        7.69         2.10         5.82         6.38         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HO 
        6.15         5.69         7.63         4.11         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.71         8.71         3.42 

$`AMP PEAK  3(1Q23.3) WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
        7.33         6.58        11.93        12.16        17.85        19.46 
TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
        5.06         8.61         8.25         2.01         0.46         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1AA 
       12.92         4.90         5.19         8.09        31.40         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A3IQ 
        8.91         7.17         5.85         6.64         1.81        10.49 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-FD-A3B3 TCGA-FD-A3B5 
        9.67         8.28        10.55       131.15         8.81         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SN TCGA-FD-A3SQ 
        6.87        11.05         8.94         7.96         6.81        46.78 
TCGA-FD-A43U TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        6.84        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3RC 
        7.04        20.12         2.86         2.24         4.50         1.38 
TCGA-GC-A3RD TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        1.02         3.12         7.56         7.79         6.64         6.38 
TCGA-K4-A3WV 
        4.64 

  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                         0.10                          0.46 
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                       118.88                        131.15 
  AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE 
                         6.12                          7.56 
[1] "0.1 - 118.9 (6.1)" "0.5 - 131.2 (7.6)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  3(1Q23.3) WILD-TYPE"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  3(1Q23.3) WILD-TYPE" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK  3(1Q23.3) MUTATED"   "AMP PEAK  3(1Q23.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK  3(1Q23.3) MUTATED" "AMP PEAK  3(1Q23.3) WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q23.3) MUTATED     16   51
  AMP PEAK  3(1Q23.3) WILD-TYPE   17   41
        clus
vv       AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  FEMALE                          16                            17
  MALE                            51                            41
D3V4, continuous
D3V5, continuous
D3V6, continuous
D3V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(1Q23.3) MUTATED   33  4 29
  AMP PEAK  3(1Q23.3) WILD-TYPE 40  0 18
D3V8, multiclass
    clus
vv   AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  M0                          33                            40
  M1                           4                             0
  MX                          29                            18
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  3(1Q23.3) MUTATED   32  9 16  4  5
  AMP PEAK  3(1Q23.3) WILD-TYPE 39  5  8  0  5
D3V9, multiclass
D3V10, continuous
D3V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  3(1Q23.3) MUTATED         1       17        17       29
  AMP PEAK  3(1Q23.3) WILD-TYPE       0       18        23       15
D3V12, multiclass
           clus
vv          AMP PEAK  3(1Q23.3) MUTATED AMP PEAK  3(1Q23.3) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           17                            18
  STAGE III                          17                            23
  STAGE IV                           29                            15

Clustering(4) Variable = Amp Peak  4(3p25.2) mutation analysis
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(3P25.2) MUTATED   45 10
  AMP PEAK  4(3P25.2) WILD-TYPE 42 21
  AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE 
                           55                            63 
  AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE 
                           10                            21 
$`AMP PEAK  4(3P25.2) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20W TCGA-BT-A2LA 
       12.79         7.33         2.66        26.10         8.35         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU 
        3.65         4.64         0.46         4.90         7.20         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC 
        8.09         2.53         2.14        31.40         8.98       118.88 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3IN 
      100.47         1.81        10.59        75.32         7.82         8.22 
TCGA-DK-A3IS TCGA-DK-A3IU TCGA-E7-A3Y1 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3SL 
       37.84        11.51         0.10         8.94         6.87        10.98 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE 
        6.84         2.33        49.91        32.78        17.26        20.12 
TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GD-A3OS 
        0.82         1.32         4.50         1.02         2.10         5.82 
TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        6.38         4.37         6.41         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        4.11         6.64         5.33         1.51         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

$`AMP PEAK  4(3P25.2) WILD-TYPE`
TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P 
        6.74         6.58        11.93        19.00        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X 
       19.46         5.06        14.89         8.61         5.06         8.25 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         1.94         2.01         0.43         0.69        12.92 
TCGA-CU-A3KJ TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        5.46         7.04         8.91         7.17         5.85         6.64 
TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV 
        7.76         2.20         3.98        10.49         5.52         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
        8.28        10.55       131.15        36.43         8.81         8.32 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM 
        4.01        11.05         8.94         7.96        32.02         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.81         5.49         4.54        46.78        19.79         1.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 
       26.50         5.65        26.93         7.04         2.86         2.24 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GU-A42Q 
        1.38         2.50         1.08         7.69         3.12         7.56 
TCGA-GV-A3JX TCGA-GV-A40E TCGA-H4-A2HQ 
        6.15         6.38         6.71 

  AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE 
                         0.10                          0.43 
  AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE 
                       118.88                        131.15 
  AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE 
                         6.64                          7.04 
[1] "0.1 - 118.9 (6.6)" "0.4 - 131.2 (7.0)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  4(3P25.2) WILD-TYPE" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "AMP PEAK  4(3P25.2) MUTATED" "AMP PEAK  4(3P25.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  4(3P25.2) WILD-TYPE"   "AMP PEAK  4(3P25.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK  4(3P25.2) MUTATED"   "AMP PEAK  4(3P25.2) MUTATED" 
[1] "hr=" "1.9"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(3P25.2) MUTATED     11   49
  AMP PEAK  4(3P25.2) WILD-TYPE   22   43
        clus
vv       AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE
  FEMALE                          11                            22
  MALE                            49                            43
D4V4, continuous
D4V5, continuous
D4V6, continuous
D4V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  4(3P25.2) MUTATED   35  1 23
  AMP PEAK  4(3P25.2) WILD-TYPE 38  3 24
D4V8, multiclass
    clus
vv   AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE
  M0                          35                            38
  M1                           1                             3
  MX                          23                            24
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  4(3P25.2) MUTATED   31  7 14  2  5
  AMP PEAK  4(3P25.2) WILD-TYPE 40  7 10  2  5
D4V9, multiclass
D4V10, continuous
D4V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  4(3P25.2) MUTATED         1       19        15       22
  AMP PEAK  4(3P25.2) WILD-TYPE       0       16        25       22
D4V12, multiclass
           clus
vv          AMP PEAK  4(3P25.2) MUTATED AMP PEAK  4(3P25.2) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           19                            16
  STAGE III                          15                            25
  STAGE IV                           22                            22

Clustering(5) Variable = Amp Peak  5(3q26.32) mutation analysis
D5V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  5(3Q26.32) MUTATED   57 12
  AMP PEAK  5(3Q26.32) WILD-TYPE 30 19
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                            69                             49 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                            12                             19 
$`AMP PEAK  5(3Q26.32) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.74        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       26.10         5.06         5.06         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        4.64         0.46         0.43        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC 
        5.46         8.09         2.53        31.40         8.98       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IM 
      100.47         7.17         1.81        10.59         2.20         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
       10.49        37.84        11.51        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A43U 
        8.32         6.87         8.94        32.02        10.98         6.84 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY 
       49.91        26.50        32.78        17.26         7.04         0.82 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24         1.32         4.50         1.38         1.02         2.50 
TCGA-GC-A3YS TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3JX 
        1.08         5.82         6.38         7.56         6.41         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HQ 
        7.63         7.79         4.11         6.64         5.33         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

$`AMP PEAK  5(3Q26.32) WILD-TYPE`
TCGA-BT-A0S7 TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
        6.58        12.16        17.85        19.46        14.89         8.61 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A3QU 
        3.65         8.98         1.94         2.01         0.69         5.19 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 
        2.14         7.04         8.91         5.85         6.64         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW 
       75.32         3.98         8.22         5.52         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
       10.55       131.15         8.94         4.01        11.05         7.96 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IE TCGA-GC-A3BM 
        1.94         2.33         5.65        26.93        20.12         2.86 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A40E 
        7.69         2.10         3.12         4.37         5.69         6.38 
TCGA-H4-A2HO 
        1.51 

  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                          0.10                           0.69 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                        118.88                         131.15 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                          7.04                           6.64 
[1] "0.1 - 118.9 (7.0)" "0.7 - 131.2 (6.6)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK  5(3Q26.32) WILD-TYPE" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK  5(3Q26.32) WILD-TYPE"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK  5(3Q26.32) MUTATED" "AMP PEAK  5(3Q26.32) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK  5(3Q26.32) MUTATED"   "AMP PEAK  5(3Q26.32) MUTATED" 
[1] "hr=" "2.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  5(3Q26.32) MUTATED     18   55
  AMP PEAK  5(3Q26.32) WILD-TYPE   15   37
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  FEMALE                           18                             15
  MALE                             55                             37
D5V4, continuous
D5V5, continuous
D5V6, continuous
D5V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK  5(3Q26.32) MUTATED   44  2 26
  AMP PEAK  5(3Q26.32) WILD-TYPE 29  2 21
D5V8, multiclass
    clus
vv   AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  M0                           44                             29
  M1                            2                              2
  MX                           26                             21
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK  5(3Q26.32) MUTATED   44  5 16  1  6
  AMP PEAK  5(3Q26.32) WILD-TYPE 27  9  8  3  4
D5V9, multiclass
D5V10, continuous
D5V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  5(3Q26.32) MUTATED         1       22        24       22
  AMP PEAK  5(3Q26.32) WILD-TYPE       0       13        16       22
D5V12, multiclass
           clus
vv          AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  STAGE I                              1                              0
  STAGE II                            22                             13
  STAGE III                           24                             16
  STAGE IV                            22                             22

Clustering(6) Variable = Amp Peak  6(4p16.3) mutation analysis
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(4P16.3) MUTATED   19  4
  AMP PEAK  6(4P16.3) WILD-TYPE 68 27
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           23                            95 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                            4                            27 
$`AMP PEAK  6(4P16.3) MUTATED`
TCGA-BL-A0C8 TCGA-BT-A20P TCGA-BT-A20T TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C 
       12.79        17.85        14.89         1.94         2.01         0.69 
TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-DK-A2I2 TCGA-DK-A2I6 
        5.46         2.14        31.40       118.88         7.76        75.32 
TCGA-DK-A3IM TCGA-DK-A3IS TCGA-FD-A3NA TCGA-FD-A3SL TCGA-G2-A2EO TCGA-G2-A2ES 
        7.82        37.84        32.02        10.98        32.78        17.26 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RC TCGA-H4-A2HO TCGA-K4-A3WS 
        0.82         2.86         1.38         1.51         8.71 

$`AMP PEAK  6(4P16.3) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
        7.33         2.66         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V 
       26.10        12.16        19.46         5.06         8.61         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        8.35         8.25         5.88         3.65         4.64         8.98 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU 
        0.46         0.43        12.92         4.90         7.20         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        8.09         2.53         8.98         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A3IK 
        7.17         5.85         6.64         1.81        10.59         2.20 
TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        3.98         8.22        10.49         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28        10.55       131.15        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
        7.96         6.12         6.81         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
       19.79         1.94         6.84         2.33        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO 
        5.65        26.93         7.04        20.12         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.50         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW 
        3.12         5.82         6.38         7.56         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.11         6.64 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV 
        6.38         5.33         6.71         3.42         4.64 

  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                         0.69                          0.10 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                       118.88                        131.15 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                         8.71                          6.74 
[1] "0.7 - 118.9 (8.7)" "0.1 - 131.2 (6.7)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
[1] "hr=" "2.9"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(4P16.3) MUTATED      3   23
  AMP PEAK  6(4P16.3) WILD-TYPE   30   69
        clus
vv       AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  FEMALE                           3                            30
  MALE                            23                            69
D6V4, continuous
D6V5, continuous
D6V6, continuous
D6V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  6(4P16.3) MUTATED   21  1  3
  AMP PEAK  6(4P16.3) WILD-TYPE 52  3 44
D6V8, multiclass
    clus
vv   AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  M0                          21                            52
  M1                           1                             3
  MX                           3                            44
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  6(4P16.3) MUTATED   19  3  1  1  1
  AMP PEAK  6(4P16.3) WILD-TYPE 52 11 23  3  9
D6V9, multiclass
D6V10, continuous
D6V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  6(4P16.3) MUTATED         1       10         9        5
  AMP PEAK  6(4P16.3) WILD-TYPE       0       25        31       39
D6V12, multiclass
           clus
vv          AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           10                            25
  STAGE III                           9                            31
  STAGE IV                            5                            39

Clustering(7) Variable = Amp Peak  7(4q13.3) mutation analysis
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(4Q13.3) MUTATED   13  4
  AMP PEAK  7(4Q13.3) WILD-TYPE 74 27
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                           17                           101 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                            4                            27 
$`AMP PEAK  7(4Q13.3) MUTATED`
TCGA-BT-A20N TCGA-BT-A2LD TCGA-C4-A0F6 TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A7 
       26.10         3.65         2.01         5.46         2.14         8.98 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-FD-A3NA TCGA-FD-A3SR TCGA-G2-A2EJ TCGA-G2-A3VY 
        7.76        75.32        32.02        19.79        26.50         0.82 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GU-A42P TCGA-GV-A3JW TCGA-K4-A3WV 
        2.50         7.69         6.38         6.41         4.64 

$`AMP PEAK  7(4Q13.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH 
        8.61         5.06         8.35         8.25         5.88         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         1.94         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 
        4.90         7.20         5.19         8.09         2.53        31.40 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        6.64         1.81        10.59         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28        10.55       131.15        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
        7.96        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EK 
       46.78         1.94         6.84         2.33        49.91         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM 
       26.93        32.78        17.26         7.04        20.12         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS 
        2.24         1.32         4.50         1.38         1.02         1.08 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JX 
        2.10         3.12         5.82         7.56         4.37         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.11         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        5.33         1.51         6.71         8.71         3.42 

  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                         0.82                          0.10 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                        75.32                        131.15 
  AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE 
                         6.41                          6.87 
[1] "0.8 - 75.3 (6.4)"  "0.1 - 131.2 (6.9)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  7(4Q13.3) MUTATED" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  7(4Q13.3) WILD-TYPE" "AMP PEAK  7(4Q13.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  7(4Q13.3) WILD-TYPE"   "AMP PEAK  7(4Q13.3) MUTATED" 
[1] "hr=" "1.5"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q13.3) MUTATED      8    9
  AMP PEAK  7(4Q13.3) WILD-TYPE   25   83
        clus
vv       AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  FEMALE                           8                            25
  MALE                             9                            83
D7V4, continuous
D7V5, continuous
D7V6, continuous
D7V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  7(4Q13.3) MUTATED    9  0  7
  AMP PEAK  7(4Q13.3) WILD-TYPE 64  4 40
D7V8, multiclass
    clus
vv   AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  M0                           9                            64
  M1                           0                             4
  MX                           7                            40
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  7(4Q13.3) MUTATED    8  3  3  1  1
  AMP PEAK  7(4Q13.3) WILD-TYPE 63 11 21  3  9
D7V9, multiclass
D7V10, continuous
D7V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  7(4Q13.3) MUTATED         0        6         4        7
  AMP PEAK  7(4Q13.3) WILD-TYPE       1       29        36       37
D7V12, multiclass
           clus
vv          AMP PEAK  7(4Q13.3) MUTATED AMP PEAK  7(4Q13.3) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                            6                            29
  STAGE III                           4                            36
  STAGE IV                            7                            37

Clustering(8) Variable = Amp Peak  8(5p15.1) mutation analysis
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(5P15.1) MUTATED   40 15
  AMP PEAK  8(5P15.1) WILD-TYPE 47 16
  AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE 
                           55                            63 
  AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE 
                           15                            16 
$`AMP PEAK  8(5P15.1) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20T TCGA-BT-A20V 
       12.79         6.74        26.10        17.85        14.89         5.06 
TCGA-BT-A20W TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR 
        8.35         5.88         8.98         0.43        12.92         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IM 
        5.46         5.19         2.53       100.47        75.32         7.82 
TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WX TCGA-E5-A2PC TCGA-FD-A3B3 
        8.22        11.51         9.67        10.55        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SN TCGA-FD-A3SO 
        8.32         8.94         8.94        32.02         6.81         5.49 
TCGA-FD-A3SR TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE 
       19.79         2.33        49.91        32.78         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3YS 
        0.82         2.24         1.32         4.50         1.02         1.08 
TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        2.10         5.82         6.38         4.37         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G 
        5.69         7.63         7.79         4.11         6.38         5.33 
TCGA-H4-A2HQ 
        6.71 

$`AMP PEAK  8(5P15.1) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        19.00        12.16 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH 
       19.46         5.06         8.61         8.25         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3YL 
        1.94         2.01         0.46         0.69         4.90         8.09 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3WW 
        2.20         3.98        10.49        37.84         5.52         8.28 
TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
      131.15         0.10         6.87         4.01        11.05         7.96 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43U 
       10.98         6.12         4.54        46.78         1.94         6.84 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3RC 
       26.50         5.65        26.93        17.26         2.86         1.38 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GV-A3QK TCGA-H4-A2HO 
        2.50         7.69         3.12         7.56         6.64         1.51 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

  AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE 
                         0.43                          0.10 
  AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE 
                       100.47                        131.15 
  AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE 
                         7.04                          6.84 
[1] "0.4 - 100.5 (7.0)" "0.1 - 131.2 (6.8)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  8(5P15.1) MUTATED"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  8(5P15.1) WILD-TYPE"   "AMP PEAK  8(5P15.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK  8(5P15.1) MUTATED" "AMP PEAK  8(5P15.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  8(5P15.1) WILD-TYPE" "AMP PEAK  8(5P15.1) WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(5P15.1) MUTATED     13   47
  AMP PEAK  8(5P15.1) WILD-TYPE   20   45
        clus
vv       AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE
  FEMALE                          13                            20
  MALE                            47                            45
D8V4, continuous
D8V5, continuous
D8V6, continuous
D8V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  8(5P15.1) MUTATED   31  2 26
  AMP PEAK  8(5P15.1) WILD-TYPE 42  2 21
D8V8, multiclass
    clus
vv   AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE
  M0                          31                            42
  M1                           2                             2
  MX                          26                            21
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  8(5P15.1) MUTATED   30 10  8  1 10
  AMP PEAK  8(5P15.1) WILD-TYPE 41  4 16  3  0
D8V9, multiclass
D8V10, continuous
D8V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  8(5P15.1) MUTATED         1       18        19       20
  AMP PEAK  8(5P15.1) WILD-TYPE       0       17        21       24
D8V12, multiclass
           clus
vv          AMP PEAK  8(5P15.1) MUTATED AMP PEAK  8(5P15.1) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           18                            17
  STAGE III                          19                            21
  STAGE IV                           20                            24

Clustering(9) Variable = Amp Peak  9(6p22.3) mutation analysis
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(6P22.3) MUTATED   37 11
  AMP PEAK  9(6P22.3) WILD-TYPE 50 20
  AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE 
                           48                            70 
  AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE 
                           11                            20 
$`AMP PEAK  9(6P22.3) MUTATED`
TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD 
        2.66         6.58         5.06         8.35         5.88         3.65 
TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1A6 
        8.98         0.43        12.92         5.19         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        8.98       118.88       100.47        10.59         7.76        75.32 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WX TCGA-E5-A2PC 
        3.98         7.82        37.84        11.51        10.55        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3SP TCGA-FD-A3SR 
        8.81         6.87         4.01         8.94         4.54        19.79 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
        2.33        49.91         0.82         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GU-A42P 
        4.50         1.38         1.02         1.08         7.69         6.38 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A40E TCGA-GV-A40G TCGA-K4-A3WV 
        6.41         5.69         7.79         6.38         5.33         4.64 

$`AMP PEAK  9(6P22.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
       12.79         7.33         6.74        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       12.16        17.85        19.46        14.89         8.61         5.06 
TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
        8.25         4.64         1.94         2.01         0.46         0.69 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1AA 
        4.90         7.20         5.46         8.09         2.53         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A3IK 
        8.91         7.17         5.85         6.64         1.81         2.20 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
        8.22        10.49         5.52         9.67         8.28       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        0.10         8.32         8.94        11.05         7.96        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS 
       10.98         6.12         6.81         5.49        46.78         1.94 
TCGA-FD-A43U TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        6.84        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        7.04        20.12         2.50         2.10         3.12         5.82 
TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK 
        7.56         4.37         6.15         7.63         4.11         6.64 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        1.51         6.71         8.71         3.42 

  AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE 
                         0.43                          0.10 
  AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE 
                       118.88                        131.15 
  AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE 
                        6.395                         7.105 
[1] "0.4 - 118.9 (6.4)" "0.1 - 131.2 (7.1)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK  9(6P22.3) MUTATED"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK  9(6P22.3) MUTATED" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"AMP PEAK  9(6P22.3) WILD-TYPE" "AMP PEAK  9(6P22.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK  9(6P22.3) WILD-TYPE"   "AMP PEAK  9(6P22.3) MUTATED" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(6P22.3) MUTATED     15   34
  AMP PEAK  9(6P22.3) WILD-TYPE   18   58
        clus
vv       AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE
  FEMALE                          15                            18
  MALE                            34                            58
D9V4, continuous
D9V5, continuous
D9V6, continuous
D9V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK  9(6P22.3) MUTATED   29  1 18
  AMP PEAK  9(6P22.3) WILD-TYPE 44  3 29
D9V8, multiclass
    clus
vv   AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE
  M0                          29                            44
  M1                           1                             3
  MX                          18                            29
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK  9(6P22.3) MUTATED   27  9  7  2  3
  AMP PEAK  9(6P22.3) WILD-TYPE 44  5 17  2  7
D9V9, multiclass
D9V10, continuous
D9V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK  9(6P22.3) MUTATED         0       17        13       17
  AMP PEAK  9(6P22.3) WILD-TYPE       1       18        27       27
D9V12, multiclass
           clus
vv          AMP PEAK  9(6P22.3) MUTATED AMP PEAK  9(6P22.3) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           17                            18
  STAGE III                          13                            27
  STAGE IV                           17                            27

Clustering(10) Variable = Amp Peak 10(6q12) mutation analysis
D10V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 10(6Q12) MUTATED   19  3
  AMP PEAK 10(6Q12) WILD-TYPE 68 28
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                         22                          96 
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                          3                          28 
$`AMP PEAK 10(6Q12) MUTATED`
TCGA-BT-A0S7 TCGA-BT-A2LA TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1AC TCGA-DK-A1AD 
        6.58         5.88         7.20         5.46       118.88       100.47 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3WX TCGA-FD-A3B7 TCGA-FT-A3EE 
       75.32         2.20         7.82        10.55         4.01         2.33 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3YS 
        0.82         2.86         1.32         4.50         1.38         1.08 
TCGA-GD-A2C5 TCGA-GV-A3JW TCGA-GV-A40E TCGA-GV-A40G 
        7.69         6.41         6.38         5.33 

$`AMP PEAK 10(6Q12) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.74        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         5.06         8.35         8.25         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
       12.92         4.90         5.19         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF 
       31.40         8.98         7.04         8.91         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IN 
        6.64         1.81        10.59         7.76         3.98         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
      131.15        36.43         0.10         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        6.87        11.05         8.94         7.96        32.02        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        1.94         6.84        49.91        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3RD 
       32.78        17.26         7.04        20.12         2.24         1.02 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        2.50         2.10         3.12         5.82         6.38         7.56 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.64         1.51         6.71         8.71         3.42         4.64 

  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                       0.82                        0.10 
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                     118.88                      131.15 
  AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE 
                       5.67                        7.25 
[1] "0.8 - 118.9 (5.7)" "0.1 - 131.2 (7.2)"
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "AMP PEAK 10(6Q12) MUTATED"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"AMP PEAK 10(6Q12) WILD-TYPE"   "AMP PEAK 10(6Q12) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "AMP PEAK 10(6Q12) MUTATED" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"AMP PEAK 10(6Q12) WILD-TYPE" "AMP PEAK 10(6Q12) WILD-TYPE" 
[1] "hr=" "1.8"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 10(6Q12) MUTATED      3   19
  AMP PEAK 10(6Q12) WILD-TYPE   30   73
        clus
vv       AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  FEMALE                         3                          30
  MALE                          19                          73
D10V4, continuous
D10V5, continuous
D10V6, continuous
D10V7, continuous
                             vv
clus                          M0 M1 MX
  AMP PEAK 10(6Q12) MUTATED   13  0  8
  AMP PEAK 10(6Q12) WILD-TYPE 60  4 39
D10V8, multiclass
    clus
vv   AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  M0                        13                          60
  M1                         0                           4
  MX                         8                          39
                             vv
clus                          N0 N1 N2 N3 NX
  AMP PEAK 10(6Q12) MUTATED   13  2  4  0  2
  AMP PEAK 10(6Q12) WILD-TYPE 58 12 20  4  8
D10V9, multiclass
D10V10, continuous
D10V11, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 10(6Q12) MUTATED         0        7         9        6
  AMP PEAK 10(6Q12) WILD-TYPE       1       28        31       38
D10V12, multiclass
           clus
vv          AMP PEAK 10(6Q12) MUTATED AMP PEAK 10(6Q12) WILD-TYPE
  STAGE I                           0                           1
  STAGE II                          7                          28
  STAGE III                         9                          31
  STAGE IV                          6                          38

Clustering(11) Variable = Amp Peak 11(6q21) mutation analysis
D11V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 11(6Q21) MUTATED   10  3
  AMP PEAK 11(6Q21) WILD-TYPE 77 28
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                         13                         105 
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                          3                          28 
$`AMP PEAK 11(6Q21) MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A2LA TCGA-CF-A1HS TCGA-CU-A0YR TCGA-DK-A1A3 
        6.58        19.00         5.88         0.43         7.20         2.53 
TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A3WX TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3YS 
        8.98       118.88        10.55         2.86         1.32         1.08 
TCGA-GD-A2C5 
        7.69 

$`AMP PEAK 11(6Q21) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20N 
       12.79         7.33         2.66         6.74        11.93        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         8.25         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.92         4.90 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA 
        5.46         5.19         8.09         2.14        31.40         7.04 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76        75.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
        8.28       131.15        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       32.02        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF 
       46.78        19.79         1.94         6.84         2.33        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
       20.12         0.82         2.24         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        2.50         2.10         3.12         5.82         6.38         7.56 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        4.37         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                       0.43                        0.10 
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                     118.88                      131.15 
  AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE 
                       6.58                        6.87 
[1] "0.4 - 118.9 (6.6)" "0.1 - 131.2 (6.9)"
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "AMP PEAK 11(6Q21) MUTATED"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "AMP PEAK 11(6Q21) MUTATED"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "AMP PEAK 11(6Q21) MUTATED" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"AMP PEAK 11(6Q21) WILD-TYPE"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "AMP PEAK 11(6Q21) MUTATED"   "AMP PEAK 11(6Q21) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"AMP PEAK 11(6Q21) WILD-TYPE" "AMP PEAK 11(6Q21) WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 11(6Q21) MUTATED      4    9
  AMP PEAK 11(6Q21) WILD-TYPE   29   83
        clus
vv       AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  FEMALE                         4                          29
  MALE                           9                          83
D11V4, continuous
D11V5, continuous
D11V6, continuous
D11V7, continuous
                             vv
clus                          M0 M1 MX
  AMP PEAK 11(6Q21) MUTATED    9  0  4
  AMP PEAK 11(6Q21) WILD-TYPE 64  4 43
D11V8, multiclass
    clus
vv   AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  M0                         9                          64
  M1                         0                           4
  MX                         4                          43
                             vv
clus                          N0 N1 N2 N3 NX
  AMP PEAK 11(6Q21) MUTATED    8  1  4  0  0
  AMP PEAK 11(6Q21) WILD-TYPE 63 13 20  4 10
D11V9, multiclass
D11V10, continuous
D11V11, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 11(6Q21) MUTATED         0        3         4        5
  AMP PEAK 11(6Q21) WILD-TYPE       1       32        36       39
D11V12, multiclass
           clus
vv          AMP PEAK 11(6Q21) MUTATED AMP PEAK 11(6Q21) WILD-TYPE
  STAGE I                           0                           1
  STAGE II                          3                          32
  STAGE III                         4                          36
  STAGE IV                          5                          39

Clustering(12) Variable = Amp Peak 12(7p11.2) mutation analysis
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(7P11.2) MUTATED   43 18
  AMP PEAK 12(7P11.2) WILD-TYPE 44 13
  AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE 
                           61                            57 
  AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE 
                           18                            13 
$`AMP PEAK 12(7P11.2) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
       12.79         2.66         6.58        19.00        26.10        12.16 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F6 
        5.06         8.35         8.25         5.88         3.65         2.01 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
        0.43        12.92         4.90         5.46         2.53         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        8.98       118.88       100.47         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82         8.22        37.84 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 
       11.51         9.67        36.43         8.81         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43U TCGA-FT-A3EE 
        4.01         8.94        46.78        19.79         6.84         2.33 
TCGA-G2-A2EO TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
       32.78         2.86         2.24         4.50         1.38         1.02 
TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3JZ 
        7.69         5.82         6.38         7.56         6.41         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ 
        7.63         7.79         6.64         6.38         5.33         6.71 
TCGA-K4-A3WV 
        4.64 

$`AMP PEAK 12(7P11.2) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
        7.33         6.74        11.93        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR 
       14.89         8.61         4.64         8.98         1.94         0.46 
TCGA-CF-A27C TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1AA 
        0.69         7.20         5.19         8.09        31.40         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A3IQ TCGA-DK-A3IT 
        8.91         7.17         5.85         6.64        10.49         5.52 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B8 
        8.28        10.55       131.15         0.10         8.32        11.05 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
        7.96        32.02        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SS TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.54         1.94        49.91        26.50         5.65        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3WC 
       17.26         7.04        20.12         0.82         1.32         2.50 
TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QI 
        1.08         2.10         3.12         4.37         6.15         4.11 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        1.51         8.71         3.42 

  AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE 
                         0.43                          0.10 
  AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE 
                       118.88                        131.15 
  AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE 
                         6.84                          7.04 
[1] "0.4 - 118.9 (6.8)" "0.1 - 131.2 (7.0)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"AMP PEAK 12(7P11.2) WILD-TYPE" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "AMP PEAK 12(7P11.2) MUTATED"   "AMP PEAK 12(7P11.2) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK 12(7P11.2) MUTATED" "AMP PEAK 12(7P11.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"AMP PEAK 12(7P11.2) WILD-TYPE"   "AMP PEAK 12(7P11.2) MUTATED" 
[1] "hr=" "1.2"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(7P11.2) MUTATED     18   46
  AMP PEAK 12(7P11.2) WILD-TYPE   15   46
        clus
vv       AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE
  FEMALE                          18                            15
  MALE                            46                            46
D12V4, continuous
D12V5, continuous
D12V6, continuous
D12V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK 12(7P11.2) MUTATED   38  1 25
  AMP PEAK 12(7P11.2) WILD-TYPE 35  3 22
D12V8, multiclass
    clus
vv   AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE
  M0                          38                            35
  M1                           1                             3
  MX                          25                            22
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK 12(7P11.2) MUTATED   33  5 17  2  7
  AMP PEAK 12(7P11.2) WILD-TYPE 38  9  7  2  3
D12V9, multiclass
D12V10, continuous
D12V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 12(7P11.2) MUTATED         1       19        18       24
  AMP PEAK 12(7P11.2) WILD-TYPE       0       16        22       20
D12V12, multiclass
           clus
vv          AMP PEAK 12(7P11.2) MUTATED AMP PEAK 12(7P11.2) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           19                            16
  STAGE III                          18                            22
  STAGE IV                           24                            20

Clustering(13) Variable = Amp Peak 13(8p11.23) mutation analysis
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(8P11.23) MUTATED   31  9
  AMP PEAK 13(8P11.23) WILD-TYPE 56 22
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                            40                             78 
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                             9                             22 
$`AMP PEAK 13(8P11.23) MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A2LD 
        2.66         6.74        26.10         5.06         5.88         3.65 
TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1AD TCGA-DK-A2I1 
        2.01         0.69         5.19         2.14       100.47        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-E5-A2PC 
       75.32         2.20        10.49        37.84        11.51        36.43 
TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        4.01        32.02         6.12        46.78        19.79         1.94 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
        6.84         2.33        17.26        20.12         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        2.24         1.02         7.69         4.37         6.41         6.15 
TCGA-GV-A3QI TCGA-GV-A40E TCGA-K4-A3WU TCGA-K4-A3WV 
        4.11         6.38         3.42         4.64 

$`AMP PEAK 13(8P11.23) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
       12.79         7.33         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W 
       17.85        19.46         5.06        14.89         8.61         8.35 
TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS 
        8.25         4.64         8.98         1.94         0.46         0.43 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 
       12.92         4.90         7.20         5.46         8.09         2.53 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       118.88         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IM 
        5.85         6.64         1.81         7.76         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        8.22         5.52         9.67         8.28        10.55       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 
        0.10         8.81         8.32         8.94         6.87        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
        8.94         7.96        10.98         6.81         5.49         4.54 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB 
       49.91        26.50         5.65        26.93        32.78         7.04 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP 
        1.32         4.50         1.38         2.50         1.08         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JZ TCGA-GV-A3QF 
        3.12         5.82         6.38         7.56         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        7.79         6.64         5.33         1.51         6.71         8.71 

  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                          0.69                           0.10 
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                        100.47                         131.15 
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                         6.000                          7.445 
[1] "0.7 - 100.5 (6.0)" "0.1 - 131.2 (7.4)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 13(8P11.23) MUTATED" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 13(8P11.23) WILD-TYPE"   "AMP PEAK 13(8P11.23) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 13(8P11.23) WILD-TYPE" "AMP PEAK 13(8P11.23) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 13(8P11.23) MUTATED"   "AMP PEAK 13(8P11.23) MUTATED" 
[1] "hr=" "1.5"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(8P11.23) MUTATED      9   34
  AMP PEAK 13(8P11.23) WILD-TYPE   24   58
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  FEMALE                            9                             24
  MALE                             34                             58
D13V4, continuous
D13V5, continuous
D13V6, continuous
D13V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 13(8P11.23) MUTATED   22  1 19
  AMP PEAK 13(8P11.23) WILD-TYPE 51  3 28
D13V8, multiclass
    clus
vv   AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  M0                           22                             51
  M1                            1                              3
  MX                           19                             28
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 13(8P11.23) MUTATED   22  5 10  1  4
  AMP PEAK 13(8P11.23) WILD-TYPE 49  9 14  3  6
D13V9, multiclass
D13V10, continuous
D13V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 13(8P11.23) MUTATED         0       14        11       15
  AMP PEAK 13(8P11.23) WILD-TYPE       1       21        29       29
D13V12, multiclass
           clus
vv          AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                            14                             21
  STAGE III                           11                             29
  STAGE IV                            15                             29

Clustering(14) Variable = Amp Peak 14(8p11.21) mutation analysis
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(8P11.21) MUTATED   33  6
  AMP PEAK 14(8P11.21) WILD-TYPE 54 25
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                            39                             79 
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                             6                             25 
$`AMP PEAK 14(8P11.21) MUTATED`
TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F6 
        6.74        26.10         8.35         5.88         3.65         2.01 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AD 
        0.69        12.92         5.19        31.40         8.98       100.47 
TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU 
       10.59        75.32         2.20        10.49        37.84        11.51 
TCGA-E5-A2PC TCGA-FD-A3NA TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U 
       36.43        32.02        46.78        19.79         1.94         6.84 
TCGA-FT-A3EE TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GD-A3OS 
        2.33        17.26         2.86         2.24         4.50         5.82 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A40E TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         8.71         3.42 

$`AMP PEAK 14(8P11.21) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR 
        5.06         8.25         4.64         8.98         1.94         0.46 
TCGA-CF-A1HS TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 
        0.43         4.90         7.20         5.46         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF 
        2.14         7.04         8.91       118.88         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        6.64         1.81         7.76         3.98         7.82         8.22 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 
        5.52         9.67         8.28        10.55       131.15         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
        8.94         7.96        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        4.54        49.91        26.50         5.65        26.93        32.78 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD 
        7.04        20.12         0.82         1.32         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P 
        2.50         1.08         7.69         2.10         3.12         6.38 
TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.56         6.41         6.64         5.33         1.51         6.71 
TCGA-K4-A3WV 
        4.64 

  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                          0.69                           0.10 
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                        100.47                         131.15 
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                          6.84                           6.87 
[1] "0.7 - 100.5 (6.8)" "0.1 - 131.2 (6.9)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 14(8P11.21) MUTATED"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 14(8P11.21) WILD-TYPE" "AMP PEAK 14(8P11.21) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 14(8P11.21) WILD-TYPE"   "AMP PEAK 14(8P11.21) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 14(8P11.21) MUTATED" "AMP PEAK 14(8P11.21) WILD-TYPE" 
[1] "hr=" "3.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(8P11.21) MUTATED      7   34
  AMP PEAK 14(8P11.21) WILD-TYPE   26   58
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  FEMALE                            7                             26
  MALE                             34                             58
D14V4, continuous
D14V5, continuous
D14V6, continuous
D14V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 14(8P11.21) MUTATED   22  0 19
  AMP PEAK 14(8P11.21) WILD-TYPE 51  4 28
D14V8, multiclass
    clus
vv   AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  M0                           22                             51
  M1                            0                              4
  MX                           19                             28
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 14(8P11.21) MUTATED   22  6  8  2  3
  AMP PEAK 14(8P11.21) WILD-TYPE 49  8 16  2  7
D14V9, multiclass
D14V10, continuous
D14V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 14(8P11.21) MUTATED         0       11        12       15
  AMP PEAK 14(8P11.21) WILD-TYPE       1       24        28       29
D14V12, multiclass
           clus
vv          AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                            11                             24
  STAGE III                           12                             28
  STAGE IV                            15                             29

Clustering(15) Variable = Amp Peak 15(8q22.3) mutation analysis
D15V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 15(8Q22.3) MUTATED   57 16
  AMP PEAK 15(8Q22.3) WILD-TYPE 30 15
  AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE 
                           73                            45 
  AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE 
                           16                            15 
$`AMP PEAK 15(8Q22.3) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20T 
       12.79         2.66         6.74        19.00        26.10        14.89 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
        5.06         8.35         8.25         5.88         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YR 
        1.94         2.01         0.43         0.69        12.92         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.46         5.19         2.53         2.14        31.40         8.98 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK 
      118.88       100.47         7.17        10.59        75.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N6 TCGA-FD-A3NA 
       36.43         8.94         6.87         4.01         7.96        32.02 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EO 
        4.54        46.78         6.84         2.33         5.65        32.78 
TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB 
       17.26        20.12         0.82         2.86         2.24         4.50 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        1.02         2.50         1.08         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        6.38         4.37         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        7.79         4.11         6.38         1.51         6.71         8.71 
TCGA-K4-A3WU 
        3.42 

$`AMP PEAK 15(8Q22.3) WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
        7.33         6.58        11.93        12.16        17.85        19.46 
TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CU-A0YO TCGA-CU-A3YL 
        5.06         8.61         4.64         0.46         4.90         8.09 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
        7.04         8.91         5.85         6.64         1.81         7.76 
TCGA-DK-A3IL TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 
        3.98         9.67         8.28        10.55       131.15         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3SL TCGA-FD-A3SM 
        8.81         8.32        11.05         8.94        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.81         5.49        19.79         1.94        49.91        26.50 
TCGA-G2-A2EL TCGA-G2-A3IB TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GD-A2C5 TCGA-GU-A42Q 
       26.93         7.04         1.32         1.38         7.69         7.56 
TCGA-GV-A3QK TCGA-GV-A40G TCGA-K4-A3WV 
        6.64         5.33         4.64 

  AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE 
                         0.43                          0.10 
  AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE 
                       118.88                        131.15 
  AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE 
                         6.41                          7.56 
[1] "0.4 - 118.9 (6.4)" "0.1 - 131.2 (7.6)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"AMP PEAK 15(8Q22.3) WILD-TYPE" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"AMP PEAK 15(8Q22.3) WILD-TYPE"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "AMP PEAK 15(8Q22.3) MUTATED"   "AMP PEAK 15(8Q22.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "AMP PEAK 15(8Q22.3) MUTATED" "AMP PEAK 15(8Q22.3) WILD-TYPE" 
[1] "hr=" "1.5"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 15(8Q22.3) MUTATED     15   61
  AMP PEAK 15(8Q22.3) WILD-TYPE   18   31
        clus
vv       AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE
  FEMALE                          15                            18
  MALE                            61                            31
D15V4, continuous
D15V5, continuous
D15V6, continuous
D15V7, continuous
                               vv
clus                            M0 M1 MX
  AMP PEAK 15(8Q22.3) MUTATED   43  2 30
  AMP PEAK 15(8Q22.3) WILD-TYPE 30  2 17
D15V8, multiclass
    clus
vv   AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE
  M0                          43                            30
  M1                           2                             2
  MX                          30                            17
                               vv
clus                            N0 N1 N2 N3 NX
  AMP PEAK 15(8Q22.3) MUTATED   42 12 13  1  7
  AMP PEAK 15(8Q22.3) WILD-TYPE 29  2 11  3  3
D15V9, multiclass
D15V10, continuous
D15V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 15(8Q22.3) MUTATED         1       21        24       26
  AMP PEAK 15(8Q22.3) WILD-TYPE       0       14        16       18
D15V12, multiclass
           clus
vv          AMP PEAK 15(8Q22.3) MUTATED AMP PEAK 15(8Q22.3) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           21                            14
  STAGE III                          24                            16
  STAGE IV                           26                            18

Clustering(16) Variable = Amp Peak 16(8q24.21) mutation analysis
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(8Q24.21) MUTATED   56 15
  AMP PEAK 16(8Q24.21) WILD-TYPE 31 16
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                            71                             47 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                            15                             16 
$`AMP PEAK 16(8Q24.21) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
       12.79         2.66         6.74        11.93        19.00        26.10 
TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0EZ 
       14.89         5.06         8.35         8.25         5.88         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YR 
        1.94         2.01         0.43         0.69        12.92         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.46         5.19         2.53         2.14        31.40         8.98 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK 
      118.88       100.47         7.17        10.59        75.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        37.84         5.52        11.51 
TCGA-E5-A2PC TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N6 TCGA-FD-A3SQ TCGA-FD-A43U 
       36.43         6.87         4.01         7.96        46.78         6.84 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE 
        2.33        49.91         5.65        32.78        17.26        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC 
        0.82         2.86         2.24         4.50         1.02         2.50 
TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        1.08         2.10         3.12         5.82         6.38         7.56 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        4.37         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        4.11         6.38         6.71         8.71         3.42 

$`AMP PEAK 16(8Q24.21) WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
        7.33         6.58        12.16        17.85        19.46         5.06 
TCGA-BT-A20U TCGA-BT-A2LD TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CU-A0YO TCGA-CU-A3YL 
        8.61         3.65         4.64         0.46         4.90         8.09 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
        7.04         8.91         5.85         6.64         1.81         7.76 
TCGA-DK-A3IL TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 
        3.98         9.67         8.28        10.55       131.15         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3NA 
        8.81         8.32         8.94        11.05         8.94        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR 
       10.98         6.12         6.81         5.49         4.54        19.79 
TCGA-FD-A3SS TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A3IB TCGA-GC-A3OO TCGA-GC-A3RC 
        1.94        26.50        26.93         7.04         1.32         1.38 
TCGA-GD-A2C5 TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WV 
        7.69         6.64         5.33         1.51         4.64 

  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                          0.43                           0.10 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                        118.88                         131.15 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                          6.74                           7.04 
[1] "0.4 - 118.9 (6.7)" "0.1 - 131.2 (7.0)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 16(8Q24.21) WILD-TYPE"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 16(8Q24.21) WILD-TYPE" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 16(8Q24.21) MUTATED"   "AMP PEAK 16(8Q24.21) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 16(8Q24.21) MUTATED" "AMP PEAK 16(8Q24.21) WILD-TYPE" 
[1] "hr=" "1.8"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(8Q24.21) MUTATED     15   60
  AMP PEAK 16(8Q24.21) WILD-TYPE   18   32
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  FEMALE                           15                             18
  MALE                             60                             32
D16V4, continuous
D16V5, continuous
D16V6, continuous
D16V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 16(8Q24.21) MUTATED   46  2 26
  AMP PEAK 16(8Q24.21) WILD-TYPE 27  2 21
D16V8, multiclass
    clus
vv   AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  M0                           46                             27
  M1                            2                              2
  MX                           26                             21
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 16(8Q24.21) MUTATED   43 10 13  1  7
  AMP PEAK 16(8Q24.21) WILD-TYPE 28  4 11  3  3
D16V9, multiclass
D16V10, continuous
D16V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 16(8Q24.21) MUTATED         1       22        24       24
  AMP PEAK 16(8Q24.21) WILD-TYPE       0       13        16       20
D16V12, multiclass
           clus
vv          AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  STAGE I                              1                              0
  STAGE II                            22                             13
  STAGE III                           24                             16
  STAGE IV                            24                             20

Clustering(17) Variable = Amp Peak 17(10p15.1) mutation analysis
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(10P15.1) MUTATED   34 16
  AMP PEAK 17(10P15.1) WILD-TYPE 53 15
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            50                             68 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                            16                             15 
$`AMP PEAK 17(10P15.1) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A20Q TCGA-BT-A20R 
       12.79         2.66         6.58        26.10        19.46         5.06 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 
        5.06         8.35         3.65         4.64         8.98         2.01 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 
        0.43        12.92         5.46         5.19         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 
       31.40       118.88       100.47         1.81        10.59        75.32 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B5 
        3.98         7.82         8.22         9.67         8.81         8.94 
TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FT-A3EE 
        6.87         8.94        32.02        19.79         1.94         2.33 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3RD 
       32.78        17.26        20.12         0.82         4.50         1.02 
TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QH 
        7.69         5.82         6.38         6.41         7.63         7.79 
TCGA-GV-A40E TCGA-K4-A3WS 
        6.38         8.71 

$`AMP PEAK 17(10P15.1) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P 
        7.33         6.74        11.93        19.00        12.16        17.85 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CF-A1HR 
       14.89         8.61         8.25         5.88         1.94         0.46 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A7 TCGA-DK-A1AA 
        0.69         4.90         7.20         8.09         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IK 
        8.91         7.17         5.85         6.64         7.76         2.20 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
       10.49        37.84         5.52        11.51         8.28        10.55 
TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3B8 
      131.15        36.43         0.10         8.32         4.01        11.05 
TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
        7.96        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       46.78         6.84        49.91        26.50         5.65        26.93 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3WC 
        7.04         2.86         2.24         1.32         1.38         2.50 
TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JX 
        1.08         2.10         3.12         7.56         4.37         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.69         4.11         6.64         5.33         1.51         6.71 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                          0.43                           0.10 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                        118.88                         131.15 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                         7.660                          6.775 
[1] "0.4 - 118.9 (7.7)" "0.1 - 131.2 (6.8)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 17(10P15.1) MUTATED"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 17(10P15.1) MUTATED" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 17(10P15.1) WILD-TYPE"   "AMP PEAK 17(10P15.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"AMP PEAK 17(10P15.1) WILD-TYPE" "AMP PEAK 17(10P15.1) WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(10P15.1) MUTATED     14   39
  AMP PEAK 17(10P15.1) WILD-TYPE   19   53
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  FEMALE                           14                             19
  MALE                             39                             53
D17V4, continuous
D17V5, continuous
D17V6, continuous
D17V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 17(10P15.1) MUTATED   31  1 20
  AMP PEAK 17(10P15.1) WILD-TYPE 42  3 27
D17V8, multiclass
    clus
vv   AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  M0                           31                             42
  M1                            1                              3
  MX                           20                             27
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 17(10P15.1) MUTATED   24  8 12  1  7
  AMP PEAK 17(10P15.1) WILD-TYPE 47  6 12  3  3
D17V9, multiclass
D17V10, continuous
D17V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 17(10P15.1) MUTATED         1       15        15       20
  AMP PEAK 17(10P15.1) WILD-TYPE       0       20        25       24
D17V12, multiclass
           clus
vv          AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  STAGE I                              1                              0
  STAGE II                            15                             20
  STAGE III                           15                             25
  STAGE IV                            20                             24

Clustering(18) Variable = Amp Peak 18(11q13.3) mutation analysis
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(11Q13.3) MUTATED   34 11
  AMP PEAK 18(11Q13.3) WILD-TYPE 53 20
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                            45                             73 
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                            11                             20 
$`AMP PEAK 18(11Q13.3) MUTATED`
TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HS 
        2.66        26.10         5.88         4.64         2.01         0.43 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
       12.92         4.90         7.20         5.46         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AF TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IL 
       31.40         5.85        10.59         7.76        75.32         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3WX TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3B6 
        7.82        10.49        10.55        36.43         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A43U TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        4.01        32.02         6.84        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GV-A3JW 
        2.24         1.38         1.02         7.69         5.82         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.11         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        5.33         6.71         4.64 

$`AMP PEAK 18(11Q13.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 
        5.06         8.35         8.25         3.65         8.98         1.94 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A7 TCGA-DK-A1AA 
        0.46         0.69         5.19         8.09         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       118.88       100.47         7.17         6.64         1.81 
TCGA-DK-A3IK TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        2.20         8.22        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B8 
        8.28       131.15         0.10         8.81         8.32        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
        8.94         7.96        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EF 
        4.54        46.78        19.79         1.94         2.33        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3BM 
       26.50         5.65        26.93        32.78         0.82         2.86 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.32         4.50         2.50         1.08         2.10         3.12 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JX TCGA-H4-A2HO TCGA-K4-A3WS 
        6.38         7.56         4.37         6.15         1.51         8.71 
TCGA-K4-A3WU 
        3.42 

  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                          0.43                           0.10 
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                         75.32                         131.15 
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                          6.64                           7.33 
[1] "0.4 - 75.3 (6.6)"  "0.1 - 131.2 (7.3)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 18(11Q13.3) WILD-TYPE" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 18(11Q13.3) MUTATED"   "AMP PEAK 18(11Q13.3) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 18(11Q13.3) MUTATED" "AMP PEAK 18(11Q13.3) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"AMP PEAK 18(11Q13.3) WILD-TYPE"   "AMP PEAK 18(11Q13.3) MUTATED" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(11Q13.3) MUTATED     14   33
  AMP PEAK 18(11Q13.3) WILD-TYPE   19   59
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  FEMALE                           14                             19
  MALE                             33                             59
D18V4, continuous
D18V5, continuous
D18V6, continuous
D18V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 18(11Q13.3) MUTATED   24  1 22
  AMP PEAK 18(11Q13.3) WILD-TYPE 49  3 25
D18V8, multiclass
    clus
vv   AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  M0                           24                             49
  M1                            1                              3
  MX                           22                             25
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 18(11Q13.3) MUTATED   22  4 12  2  7
  AMP PEAK 18(11Q13.3) WILD-TYPE 49 10 12  2  3
D18V9, multiclass
D18V10, continuous
D18V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 18(11Q13.3) MUTATED         0       15        12       18
  AMP PEAK 18(11Q13.3) WILD-TYPE       1       20        28       26
D18V12, multiclass
           clus
vv          AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                            15                             20
  STAGE III                           12                             28
  STAGE IV                            18                             26

Clustering(19) Variable = Amp Peak 19(12q15) mutation analysis
D19V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 19(12Q15) MUTATED   24 12
  AMP PEAK 19(12Q15) WILD-TYPE 63 19
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          36                           82 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          12                           19 
$`AMP PEAK 19(12Q15) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N 
       12.79         2.66         6.74         6.58        19.00        26.10 
TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A20X TCGA-C4-A0F6 TCGA-CU-A0YO 
       17.85         5.06         5.06         8.25         2.01         4.90 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC 
        7.20         2.53         2.14        31.40         8.98       118.88 
TCGA-DK-A3IS TCGA-DK-A3WX TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3VY 
       37.84        10.55        49.91         5.65        32.78         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RD TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QI 
        2.86         2.24         1.02         6.41         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV 
        6.64         6.38         1.51         6.71         3.42         4.64 

$`AMP PEAK 19(12Q15) WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
        7.33        11.93        12.16        19.46        14.89         8.61 
TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.35         5.88         3.65         4.64         8.98         1.94 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.46         0.43         0.69        12.92         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        8.09         7.04         8.91       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU 
        3.98         7.82         8.22        10.49         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
        9.67         8.28       131.15        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
        7.96        32.02        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE 
        4.54        46.78        19.79         1.94         6.84         2.33 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3OO 
       26.50        26.93        17.26         7.04        20.12         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.50         1.38         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JX 
        3.12         5.82         6.38         7.56         4.37         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A40G TCGA-K4-A3WS 
        5.69         7.63         5.33         8.71 

  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                        0.82                         0.10 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                      118.88                       131.15 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                       6.495                        7.250 
[1] "0.8 - 118.9 (6.5)" "0.1 - 131.2 (7.2)"
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"AMP PEAK 19(12Q15) WILD-TYPE" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
"AMP PEAK 19(12Q15) WILD-TYPE"   "AMP PEAK 19(12Q15) MUTATED" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 19(12Q15) MUTATED" "AMP PEAK 19(12Q15) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "AMP PEAK 19(12Q15) MUTATED"   "AMP PEAK 19(12Q15) MUTATED" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 19(12Q15) MUTATED     10   31
  AMP PEAK 19(12Q15) WILD-TYPE   23   61
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  FEMALE                         10                           23
  MALE                           31                           61
D19V4, continuous
D19V5, continuous
D19V6, continuous
D19V7, continuous
                              vv
clus                           M0 M1 MX
  AMP PEAK 19(12Q15) MUTATED   27  1 12
  AMP PEAK 19(12Q15) WILD-TYPE 46  3 35
D19V8, multiclass
    clus
vv   AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  M0                         27                           46
  M1                          1                            3
  MX                         12                           35
                              vv
clus                           N0 N1 N2 N3 NX
  AMP PEAK 19(12Q15) MUTATED   24  2  9  0  5
  AMP PEAK 19(12Q15) WILD-TYPE 47 12 15  4  5
D19V9, multiclass
D19V10, continuous
D19V11, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 19(12Q15) MUTATED         1       14        13       11
  AMP PEAK 19(12Q15) WILD-TYPE       0       21        27       33
D19V12, multiclass
           clus
vv          AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  STAGE I                            1                            0
  STAGE II                          14                           21
  STAGE III                         13                           27
  STAGE IV                          11                           33

Clustering(20) Variable = Amp Peak 20(13q22.1) mutation analysis
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(13Q22.1) MUTATED   34  8
  AMP PEAK 20(13Q22.1) WILD-TYPE 53 23
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            42                             76 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                             8                             23 
$`AMP PEAK 20(13Q22.1) MUTATED`
TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20Q TCGA-BT-A20U 
        6.74         6.58        19.00        26.10        19.46         8.61 
TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR 
        3.65         1.94         0.46         0.43        12.92         7.20 
TCGA-CU-A3YL TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ 
        8.09         1.81        75.32         2.20         3.98        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3B6 
       37.84         5.52        11.51        36.43         8.94         6.87 
TCGA-FD-A3N5 TCGA-FD-A3SM TCGA-G2-A2EF TCGA-G2-A2EK TCGA-GC-A3OO TCGA-GC-A3RB 
        8.94         6.12        49.91         5.65         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JX 
        1.38         2.50         2.10         5.82         6.38         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-K4-A3WU TCGA-K4-A3WV 
        5.69         7.63         7.79         6.64         3.42         4.64 

$`AMP PEAK 20(13Q22.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
       12.79         7.33         2.66        11.93        12.16        17.85 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
        5.06        14.89         5.06         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3KJ 
        4.64         8.98         2.01         0.69         4.90         5.46 
TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.19         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IV TCGA-DK-A3WW 
       10.59         7.76         7.82         8.22         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B7 
       10.55       131.15         0.10         8.81         8.32         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SO 
       11.05         7.96        32.02        10.98         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE 
        4.54        46.78        19.79         1.94         6.84         2.33 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
       26.50        26.93        32.78        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 
        0.82         2.86         2.24         1.02         1.08         7.69 
TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QI TCGA-GV-A40E 
        3.12         7.56         4.37         6.41         4.11         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        5.33         1.51         6.71         8.71 

  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                          0.43                           0.10 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                         75.32                         131.15 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                          6.48                           7.25 
[1] "0.4 - 75.3 (6.5)"  "0.1 - 131.2 (7.2)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
[1] "hr=" "1.4"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(13Q22.1) MUTATED     11   33
  AMP PEAK 20(13Q22.1) WILD-TYPE   22   59
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  FEMALE                           11                             22
  MALE                             33                             59
D20V4, continuous
D20V5, continuous
D20V6, continuous
D20V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 20(13Q22.1) MUTATED   27  1 16
  AMP PEAK 20(13Q22.1) WILD-TYPE 46  3 31
D20V8, multiclass
    clus
vv   AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  M0                           27                             46
  M1                            1                              3
  MX                           16                             31
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 20(13Q22.1) MUTATED   27  5  9  1  2
  AMP PEAK 20(13Q22.1) WILD-TYPE 44  9 15  3  8
D20V9, multiclass
D20V10, continuous
D20V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 20(13Q22.1) MUTATED         0       15        11       15
  AMP PEAK 20(13Q22.1) WILD-TYPE       1       20        29       29
D20V12, multiclass
           clus
vv          AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                            15                             20
  STAGE III                           11                             29
  STAGE IV                            15                             29

Clustering(21) Variable = Amp Peak 21(16p12.1) mutation analysis
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(16P12.1) MUTATED   23 11
  AMP PEAK 21(16P12.1) WILD-TYPE 64 20
  AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE 
                            34                             84 
  AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE 
                            11                             20 
$`AMP PEAK 21(16P12.1) MUTATED`
TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA 
        2.66         6.58         5.06         5.06         8.25         5.88 
TCGA-C4-A0EZ TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I2 
        8.98        12.92         5.19       118.88        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IV TCGA-E5-A2PC 
        2.20         3.98         7.82        37.84         9.67        36.43 
TCGA-FD-A3B6 TCGA-FD-A3SR TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EO 
        6.87        19.79         6.84         2.33        49.91        32.78 
TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW 
       20.12         2.86         2.24         6.38         4.37         6.41 
TCGA-GV-A3JZ TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        5.69         6.71         8.71         3.42 

$`AMP PEAK 21(16P12.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
       12.79         7.33         6.74        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W 
       12.16        17.85        19.46        14.89         8.61         8.35 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         4.64         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 
        0.69         4.90         7.20         5.46         8.09         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        2.14        31.40         8.98         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IN 
        7.17         5.85         6.64         1.81        75.32         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49         5.52        11.51         8.28        10.55       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         8.94         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
        8.94         7.96        32.02        10.98         6.12         6.81 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-G2-A2EJ TCGA-G2-A2EK 
        5.49         4.54        46.78         1.94        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RB 
       26.93        17.26         7.04         0.82         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        1.38         1.02         2.50         1.08         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH 
        3.12         5.82         7.56         6.15         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WV 
        4.11         6.64         6.38         5.33         1.51         4.64 

  AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE 
                           2.2                            0.1 
  AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE 
                        118.88                         131.15 
  AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE 
                         6.775                          7.040 
[1] "2.2 - 118.9 (6.8)" "0.1 - 131.2 (7.0)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 21(16P12.1) WILD-TYPE"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"AMP PEAK 21(16P12.1) WILD-TYPE" "AMP PEAK 21(16P12.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 21(16P12.1) MUTATED"   "AMP PEAK 21(16P12.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 21(16P12.1) MUTATED" "AMP PEAK 21(16P12.1) WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(16P12.1) MUTATED      9   25
  AMP PEAK 21(16P12.1) WILD-TYPE   24   67
        clus
vv       AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE
  FEMALE                            9                             24
  MALE                             25                             67
D21V4, continuous
D21V5, continuous
D21V6, continuous
D21V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 21(16P12.1) MUTATED   20  2 12
  AMP PEAK 21(16P12.1) WILD-TYPE 53  2 35
D21V8, multiclass
    clus
vv   AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE
  M0                           20                             53
  M1                            2                              2
  MX                           12                             35
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 21(16P12.1) MUTATED   15  6  7  2  4
  AMP PEAK 21(16P12.1) WILD-TYPE 56  8 17  2  6
D21V9, multiclass
D21V10, continuous
D21V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 21(16P12.1) MUTATED         0        8         9       16
  AMP PEAK 21(16P12.1) WILD-TYPE       1       27        31       28
D21V12, multiclass
           clus
vv          AMP PEAK 21(16P12.1) MUTATED AMP PEAK 21(16P12.1) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                             8                             27
  STAGE III                            9                             31
  STAGE IV                            16                             28

Clustering(22) Variable = Amp Peak 22(17q11.2) mutation analysis
D22V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 22(17Q11.2) MUTATED   38 16
  AMP PEAK 22(17Q11.2) WILD-TYPE 49 15
  AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE 
                            54                             64 
  AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE 
                            16                             15 
$`AMP PEAK 22(17Q11.2) MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
        2.66         6.74         6.58        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
       14.89         8.61         8.35         3.65         4.64         8.98 
TCGA-CF-A1HR TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        0.46         7.20         8.09         2.14        31.40         8.98 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IM 
      118.88       100.47        10.59         7.76         2.20         7.82 
TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3NA 
       37.84        36.43         8.94         6.87         8.94        32.02 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EO TCGA-G2-A3IE 
        4.54        46.78         6.84         2.33        32.78        20.12 
TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42P 
        0.82         4.50         1.08         7.69         2.10         6.38 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         6.41         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV 
        6.64         6.38         5.33         6.71         3.42         4.64 

$`AMP PEAK 22(17Q11.2) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
       12.79         7.33        11.93        19.00        26.10        12.16 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS 
        5.06         8.25         5.88         1.94         2.01         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 
        0.69        12.92         4.90         5.46         5.19         2.53 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        7.04         8.91         7.17         5.85         6.64         1.81 
TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU 
       75.32         3.98         8.22        10.49         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 
        9.67         8.28        10.55       131.15         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM 
        8.32         4.01        11.05         7.96        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.81         5.49        19.79         1.94        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 
        5.65        26.93        17.26         7.04         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS 
        1.32         1.38         1.02         2.50         3.12         5.82 
TCGA-GU-A42Q TCGA-GV-A3JX TCGA-H4-A2HO TCGA-K4-A3WS 
        7.56         6.15         1.51         8.71 

  AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE 
                          0.46                           0.10 
  AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE 
                        118.88                         131.15 
  AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE 
                         6.855                          6.925 
[1] "0.5 - 118.9 (6.9)" "0.1 - 131.2 (6.9)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"AMP PEAK 22(17Q11.2) WILD-TYPE" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"AMP PEAK 22(17Q11.2) WILD-TYPE"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "AMP PEAK 22(17Q11.2) MUTATED" "AMP PEAK 22(17Q11.2) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
  "AMP PEAK 22(17Q11.2) MUTATED"   "AMP PEAK 22(17Q11.2) MUTATED" 
[1] "hr=" "1.1"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17Q11.2) MUTATED     15   43
  AMP PEAK 22(17Q11.2) WILD-TYPE   18   49
        clus
vv       AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE
  FEMALE                           15                             18
  MALE                             43                             49
D22V4, continuous
D22V5, continuous
D22V6, continuous
D22V7, continuous
                                vv
clus                             M0 M1 MX
  AMP PEAK 22(17Q11.2) MUTATED   29  2 26
  AMP PEAK 22(17Q11.2) WILD-TYPE 44  2 21
D22V8, multiclass
    clus
vv   AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE
  M0                           29                             44
  M1                            2                              2
  MX                           26                             21
                                vv
clus                             N0 N1 N2 N3 NX
  AMP PEAK 22(17Q11.2) MUTATED   26 10 14  2  5
  AMP PEAK 22(17Q11.2) WILD-TYPE 45  4 10  2  5
D22V9, multiclass
D22V10, continuous
D22V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 22(17Q11.2) MUTATED         0       16        13       26
  AMP PEAK 22(17Q11.2) WILD-TYPE       1       19        27       18
D22V12, multiclass
           clus
vv          AMP PEAK 22(17Q11.2) MUTATED AMP PEAK 22(17Q11.2) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                            16                             19
  STAGE III                           13                             27
  STAGE IV                            26                             18

Clustering(23) Variable = Amp Peak 23(17q12) mutation analysis
D23V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 23(17Q12) MUTATED   32 17
  AMP PEAK 23(17Q12) WILD-TYPE 55 14
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                          49                           69 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                          17                           14 
$`AMP PEAK 23(17Q12) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20O TCGA-BT-A20P 
       12.79         2.66         6.74         6.58        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD 
       19.46         5.06         8.61         8.35         8.25         3.65 
TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 
        8.98         0.46         7.20         8.09         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM 
        8.98       100.47        10.59         7.76        75.32         7.82 
TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3NA 
       37.84        36.43         8.94         6.87         4.01        32.02 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A3IE TCGA-GD-A3OP 
        4.54        46.78         6.84         2.33        20.12         2.10 
TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.38         4.37         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WU 
        6.64         6.38         5.33         1.51         6.71         3.42 
TCGA-K4-A3WV 
        4.64 

$`AMP PEAK 23(17Q12) WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V 
        7.33        11.93        19.00        26.10        14.89         5.06 
TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C 
        5.88         4.64         1.94         2.01         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1AA 
       12.92         4.90         5.46         5.19         2.53         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       118.88         7.17         5.85         6.64         1.81 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU 
        2.20         3.98         8.22        10.49         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 
        9.67         8.28        10.55       131.15         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM 
        8.32        11.05         8.94         7.96        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.81         5.49        19.79         1.94        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY 
        5.65        26.93        32.78        17.26         7.04         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.86         2.24         1.32         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q 
        2.50         1.08         7.69         3.12         5.82         7.56 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-K4-A3WS 
        6.41         6.15         8.71 

  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                        0.46                         0.10 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                      100.47                       131.15 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                        7.20                         6.64 
[1] "0.5 - 100.5 (7.2)" "0.1 - 131.2 (6.6)"
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 23(17Q12) WILD-TYPE"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"AMP PEAK 23(17Q12) WILD-TYPE" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 23(17Q12) MUTATED" "AMP PEAK 23(17Q12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "AMP PEAK 23(17Q12) MUTATED"   "AMP PEAK 23(17Q12) MUTATED" 
[1] "hr=" "1.4"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 23(17Q12) MUTATED     14   39
  AMP PEAK 23(17Q12) WILD-TYPE   19   53
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  FEMALE                         14                           19
  MALE                           39                           53
D23V4, continuous
D23V5, continuous
D23V6, continuous
D23V7, continuous
                              vv
clus                           M0 M1 MX
  AMP PEAK 23(17Q12) MUTATED   27  2 24
  AMP PEAK 23(17Q12) WILD-TYPE 46  2 23
D23V8, multiclass
    clus
vv   AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  M0                         27                           46
  M1                          2                            2
  MX                         24                           23
                              vv
clus                           N0 N1 N2 N3 NX
  AMP PEAK 23(17Q12) MUTATED   25  9 12  2  5
  AMP PEAK 23(17Q12) WILD-TYPE 46  5 12  2  5
D23V9, multiclass
D23V10, continuous
D23V11, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 23(17Q12) MUTATED         1       13        13       23
  AMP PEAK 23(17Q12) WILD-TYPE       0       22        27       21
D23V12, multiclass
           clus
vv          AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  STAGE I                            1                            0
  STAGE II                          13                           22
  STAGE III                         13                           27
  STAGE IV                          23                           21

Clustering(24) Variable = Amp Peak 24(19q12) mutation analysis
D24V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 24(19Q12) MUTATED   38 11
  AMP PEAK 24(19Q12) WILD-TYPE 49 20
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          49                           69 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          11                           20 
$`AMP PEAK 24(19Q12) MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20V 
        2.66         6.74        19.00        26.10        12.16         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 
        8.35         8.25         5.88         3.65         1.94         2.01 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 
        0.43        12.92         5.46         8.09         2.53        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IL 
        8.98         8.91       100.47         1.81        75.32         3.98 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B8 TCGA-FD-A3SL TCGA-FD-A3SR TCGA-FD-A3SS 
       36.43         8.81        11.05        10.98        19.79         1.94 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EO TCGA-G2-A3IE TCGA-G2-A3VY 
        6.84         2.33        49.91        32.78        20.12         0.82 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GV-A3JV 
        4.50         1.38         1.02         1.08         7.69         4.37 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40G TCGA-H4-A2HQ 
        6.41         5.69         7.63         7.79         5.33         6.71 
TCGA-K4-A3WS 
        8.71 

$`AMP PEAK 24(19Q12) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20P TCGA-BT-A20Q 
       12.79         7.33         6.58        11.93        17.85        19.46 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR 
        5.06        14.89         8.61         4.64         8.98         0.46 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1AA 
        0.69         4.90         7.20         5.19         2.14         7.04 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 
      118.88         7.17         5.85         6.64        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         7.82         8.22        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 
       11.51         9.67         8.28        10.55       131.15         0.10 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.32         8.94         6.87         4.01         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       32.02         6.12         6.81         5.49         4.54        46.78 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM 
       26.50         5.65        26.93        17.26         7.04         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.24         1.32         2.50         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        6.38         7.56         6.15         4.11         6.64         6.38 
TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         3.42         4.64 

  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                        0.43                         0.10 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                      100.47                       131.15 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                        6.84                         6.87 
[1] "0.4 - 100.5 (6.8)" "0.1 - 131.2 (6.9)"
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
[1] "hr=" "1.5"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(19Q12) MUTATED     14   38
  AMP PEAK 24(19Q12) WILD-TYPE   19   54
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  FEMALE                         14                           19
  MALE                           38                           54
D24V4, continuous
D24V5, continuous
D24V6, continuous
D24V7, continuous
                              vv
clus                           M0 M1 MX
  AMP PEAK 24(19Q12) MUTATED   28  2 21
  AMP PEAK 24(19Q12) WILD-TYPE 45  2 26
D24V8, multiclass
    clus
vv   AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  M0                         28                           45
  M1                          2                            2
  MX                         21                           26
                              vv
clus                           N0 N1 N2 N3 NX
  AMP PEAK 24(19Q12) MUTATED   24  6 14  2  4
  AMP PEAK 24(19Q12) WILD-TYPE 47  8 10  2  6
D24V9, multiclass
D24V10, continuous
D24V11, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 24(19Q12) MUTATED         0       12        15       23
  AMP PEAK 24(19Q12) WILD-TYPE       1       23        25       21
D24V12, multiclass
           clus
vv          AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  STAGE I                            0                            1
  STAGE II                          12                           23
  STAGE III                         15                           25
  STAGE IV                          23                           21

Clustering(25) Variable = Amp Peak 25(19q13.43) mutation analysis
D25V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 25(19Q13.43) MUTATED   40  9
  AMP PEAK 25(19Q13.43) WILD-TYPE 47 22
  AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE 
                             49                              69 
  AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE 
                              9                              22 
$`AMP PEAK 25(19Q13.43) MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20X 
        2.66         6.74        19.00        26.10         5.06         8.25 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YR 
        3.65         8.98         1.94         2.01         0.43         7.20 
TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AB 
        5.46         8.09         2.53        31.40         8.98         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IV 
      118.88       100.47         2.20         3.98         7.82         9.67 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3SL TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE 
       36.43         8.81        10.98         1.94         6.84         2.33 
TCGA-G2-A2EF TCGA-G2-A2EO TCGA-G2-A3IE TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS 
       49.91        32.78        20.12         1.38         1.02         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ 
        7.69         3.12         5.82         4.37         6.41         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.63         7.79         4.11         5.33         1.51         6.71 
TCGA-K4-A3WU 
        3.42 

$`AMP PEAK 25(19Q13.43) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
       12.79         7.33         6.58        11.93        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA 
       19.46         5.06        14.89         8.61         8.35         5.88 
TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3QU 
        4.64         0.46         0.69        12.92         4.90         5.19 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        2.14         7.04         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
       10.59         7.76        75.32         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 
        5.52        11.51         8.28        10.55       131.15         0.10 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
        7.96        32.02         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES 
       46.78        19.79        26.50         5.65        26.93        17.26 
TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04         0.82         2.86         2.24         1.32         4.50 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3QK 
        2.50         2.10         6.38         7.56         6.15         6.64 
TCGA-GV-A40E TCGA-K4-A3WS TCGA-K4-A3WV 
        6.38         8.71         4.64 

  AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE 
                           0.43                            0.10 
  AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE 
                         118.88                          131.15 
  AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE 
                           6.71                            7.04 
[1] "0.4 - 118.9 (6.7)" "0.1 - 131.2 (7.0)"
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"AMP PEAK 25(19Q13.43) WILD-TYPE"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"AMP PEAK 25(19Q13.43) WILD-TYPE" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "AMP PEAK 25(19Q13.43) MUTATED"   "AMP PEAK 25(19Q13.43) MUTATED" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "AMP PEAK 25(19Q13.43) MUTATED" "AMP PEAK 25(19Q13.43) WILD-TYPE" 
[1] "hr=" "1.7"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(19Q13.43) MUTATED     15   37
  AMP PEAK 25(19Q13.43) WILD-TYPE   18   55
        clus
vv       AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE
  FEMALE                            15                              18
  MALE                              37                              55
D25V4, continuous
D25V5, continuous
D25V6, continuous
D25V7, continuous
                                 vv
clus                              M0 M1 MX
  AMP PEAK 25(19Q13.43) MUTATED   27  3 22
  AMP PEAK 25(19Q13.43) WILD-TYPE 46  1 25
D25V8, multiclass
    clus
vv   AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE
  M0                            27                              46
  M1                             3                               1
  MX                            22                              25
                                 vv
clus                              N0 N1 N2 N3 NX
  AMP PEAK 25(19Q13.43) MUTATED   22  7 14  2  6
  AMP PEAK 25(19Q13.43) WILD-TYPE 49  7 10  2  4
D25V9, multiclass
D25V10, continuous
D25V11, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 25(19Q13.43) MUTATED         0       11        14       24
  AMP PEAK 25(19Q13.43) WILD-TYPE       1       24        26       20
D25V12, multiclass
           clus
vv          AMP PEAK 25(19Q13.43) MUTATED AMP PEAK 25(19Q13.43) WILD-TYPE
  STAGE I                               0                               1
  STAGE II                             11                              24
  STAGE III                            14                              26
  STAGE IV                             24                              20

Clustering(26) Variable = Amp Peak 26(20q11.21) mutation analysis
D26V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 26(20Q11.21) MUTATED   59 23
  AMP PEAK 26(20Q11.21) WILD-TYPE 28  8
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                             82                              36 
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                             23                               8 
$`AMP PEAK 26(20Q11.21) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N 
       12.79         2.66         6.74         6.58        19.00        26.10 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W 
       17.85        19.46         5.06        14.89         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.25         3.65         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 
        0.43        12.92         4.90         7.20         5.46         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 
       31.40         8.98       118.88       100.47         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        7.76        75.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WX TCGA-E5-A2PC 
       10.49        37.84        11.51         9.67        10.55        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SL 
        8.81         6.87         4.01         8.94        32.02        10.98 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EF 
        4.54        46.78        19.79         1.94         2.33        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       26.50         5.65        32.78         0.82         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 
        1.32         4.50         1.38         1.02         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        2.10         5.82         7.56         4.37         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G 
        5.69         7.63         7.79         4.11         6.38         5.33 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

$`AMP PEAK 26(20Q11.21) WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20U TCGA-BT-A2LA TCGA-BT-A3PH 
        7.33        11.93        12.16         8.61         5.88         4.64 
TCGA-CF-A27C TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1AA TCGA-DK-A1AB 
        0.69         5.19         8.09         2.53         7.04         8.91 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A3IT TCGA-DK-A3WW TCGA-DK-A3WY 
        7.17         5.85         6.64         5.52         8.28       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3SM 
        0.10         8.32         8.94        11.05         7.96         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A43U TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB 
        6.81         5.49         6.84        26.93        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GV-A3QK TCGA-H4-A2HO 
       20.12         2.50         3.12         6.38         6.64         1.51 

  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                           0.43                            0.10 
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                         118.88                          131.15 
  AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE 
                          6.805                           6.940 
[1] "0.4 - 118.9 (6.8)" "0.1 - 131.2 (6.9)"
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 26(20Q11.21) WILD-TYPE" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"AMP PEAK 26(20Q11.21) WILD-TYPE"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "AMP PEAK 26(20Q11.21) MUTATED" "AMP PEAK 26(20Q11.21) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "AMP PEAK 26(20Q11.21) MUTATED"   "AMP PEAK 26(20Q11.21) MUTATED" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(20Q11.21) MUTATED     23   64
  AMP PEAK 26(20Q11.21) WILD-TYPE   10   28
        clus
vv       AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  FEMALE                            23                              10
  MALE                              64                              28
D26V4, continuous
D26V5, continuous
D26V6, continuous
D26V7, continuous
                                 vv
clus                              M0 M1 MX
  AMP PEAK 26(20Q11.21) MUTATED   50  3 33
  AMP PEAK 26(20Q11.21) WILD-TYPE 23  1 14
D26V8, multiclass
    clus
vv   AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  M0                            50                              23
  M1                             3                               1
  MX                            33                              14
                                 vv
clus                              N0 N1 N2 N3 NX
  AMP PEAK 26(20Q11.21) MUTATED   48  9 18  4  7
  AMP PEAK 26(20Q11.21) WILD-TYPE 23  5  6  0  3
D26V9, multiclass
D26V10, continuous
D26V11, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 26(20Q11.21) MUTATED         1       26        25       31
  AMP PEAK 26(20Q11.21) WILD-TYPE       0        9        15       13
D26V12, multiclass
           clus
vv          AMP PEAK 26(20Q11.21) MUTATED AMP PEAK 26(20Q11.21) WILD-TYPE
  STAGE I                               1                               0
  STAGE II                             26                               9
  STAGE III                            25                              15
  STAGE IV                             31                              13

Clustering(27) Variable = Amp Peak 27(22q11.23) mutation analysis
D27V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 27(22Q11.23) MUTATED   24  6
  AMP PEAK 27(22Q11.23) WILD-TYPE 63 25
  AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE 
                             30                              88 
  AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE 
                              6                              25 
$`AMP PEAK 27(22Q11.23) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20W TCGA-C4-A0F6 TCGA-CU-A0YR TCGA-DK-A1A6 
       12.79         2.66         8.35         2.01         7.20        31.40 
TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WX 
      100.47        75.32         8.22        37.84        11.51        10.55 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3SL TCGA-FD-A3SN TCGA-G2-A2EF TCGA-G2-A2EO 
        6.87         4.01        10.98         6.81        49.91        32.78 
TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RD TCGA-GD-A2C5 
       17.26        20.12         2.24         1.32         1.02         7.69 
TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        4.37         5.69         7.79         4.11         6.64         6.38 

$`AMP PEAK 27(22Q11.23) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         6.74         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         0.46         0.43         0.69        12.92         4.90 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 
        5.46         5.19         8.09         2.53         2.14         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       118.88         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        1.81        10.59         7.76         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E5-A2PC 
       10.49         5.52         9.67         8.28       131.15        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N5 
        0.10         8.81         8.32         8.94        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
        7.96        32.02         6.12         5.49         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK 
       19.79         1.94         6.84         2.33        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GC-A3RC 
       26.93         7.04         0.82         2.86         4.50         1.38 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
        2.50         1.08         2.10         3.12         5.82         6.38 
TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A40G TCGA-H4-A2HO 
        7.56         6.41         6.15         7.63         5.33         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.71         8.71         3.42         4.64 

  AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE 
                           1.02                            0.10 
  AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE 
                         100.47                          131.15 
  AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE 
                          7.740                           6.675 
[1] "1.0 - 100.5 (7.7)" "0.1 - 131.2 (6.7)"
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"AMP PEAK 27(22Q11.23) WILD-TYPE"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "AMP PEAK 27(22Q11.23) MUTATED" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
  "AMP PEAK 27(22Q11.23) MUTATED"   "AMP PEAK 27(22Q11.23) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
"AMP PEAK 27(22Q11.23) WILD-TYPE" "AMP PEAK 27(22Q11.23) WILD-TYPE" 
[1] "hr=" "2.2"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 27(22Q11.23) MUTATED      5   27
  AMP PEAK 27(22Q11.23) WILD-TYPE   28   65
        clus
vv       AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE
  FEMALE                             5                              28
  MALE                              27                              65
D27V4, continuous
D27V5, continuous
D27V6, continuous
D27V7, continuous
                                 vv
clus                              M0 M1 MX
  AMP PEAK 27(22Q11.23) MUTATED   20  1 11
  AMP PEAK 27(22Q11.23) WILD-TYPE 53  3 36
D27V8, multiclass
    clus
vv   AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE
  M0                            20                              53
  M1                             1                               3
  MX                            11                              36
                                 vv
clus                              N0 N1 N2 N3 NX
  AMP PEAK 27(22Q11.23) MUTATED   17  3  7  1  4
  AMP PEAK 27(22Q11.23) WILD-TYPE 54 11 17  3  6
D27V9, multiclass
D27V10, continuous
D27V11, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  AMP PEAK 27(22Q11.23) MUTATED         1       10         9       11
  AMP PEAK 27(22Q11.23) WILD-TYPE       0       25        31       33
D27V12, multiclass
           clus
vv          AMP PEAK 27(22Q11.23) MUTATED AMP PEAK 27(22Q11.23) WILD-TYPE
  STAGE I                               1                               0
  STAGE II                             10                              25
  STAGE III                             9                              31
  STAGE IV                             11                              33

Clustering(28) Variable = Del Peak  1(1p36.11) mutation analysis
D28V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.11) MUTATED   13  8
  DEL PEAK  1(1P36.11) WILD-TYPE 74 23
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            21                             97 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                             8                             23 
$`DEL PEAK  1(1P36.11) MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20T TCGA-BT-A2LD TCGA-CF-A1HR TCGA-CF-A1HS 
        6.58        19.00        14.89         3.65         0.46         0.43 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-DK-A3IQ TCGA-DK-A3IT 
        7.20         5.46         7.17         7.76        10.49         5.52 
TCGA-DK-A3WX TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3SO TCGA-G2-A2EL TCGA-GV-A3JV 
       10.55        36.43         8.94         5.49        26.93         4.37 
TCGA-GV-A3QI TCGA-K4-A3WS TCGA-K4-A3WV 
        4.11         8.71         4.64 

$`DEL PEAK  1(1P36.11) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20N 
       12.79         7.33         2.66         6.74        11.93        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V 
       12.16        17.85        19.46         5.06         8.61         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.35         8.25         5.88         4.64         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3QU TCGA-CU-A3YL 
        2.01         0.69        12.92         4.90         5.19         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      118.88       100.47         5.85         6.64         1.81        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82         8.22        37.84 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 
       11.51         9.67         8.28       131.15         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.32         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ 
       32.02        10.98         6.12         6.81         4.54        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
       19.79         1.94         6.84         2.33        49.91        26.50 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        5.65        32.78        17.26         7.04        20.12         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.86         2.24         1.32         4.50         1.38         1.02 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.50         1.08         7.69         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        6.38         7.56         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         6.64         6.38         5.33         1.51         6.71 
TCGA-K4-A3WU 
        3.42 

  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                          0.43                           0.10 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                         36.43                         131.15 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                          7.17                           6.84 
[1] "0.4 - 36.4 (7.2)"  "0.1 - 131.2 (6.8)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
[1] "hr=" "1.7"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      6   17
  DEL PEAK  1(1P36.11) WILD-TYPE   27   75
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                            6                             27
  MALE                             17                             75
D28V4, continuous
D28V5, continuous
D28V6, continuous
D28V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.11) MUTATED   13  0 10
  DEL PEAK  1(1P36.11) WILD-TYPE 60  4 37
D28V8, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  M0                           13                             60
  M1                            0                              4
  MX                           10                             37
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK  1(1P36.11) MUTATED   14  6  1  2  0
  DEL PEAK  1(1P36.11) WILD-TYPE 57  8 23  2 10
D28V9, multiclass
D28V10, continuous
D28V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  1(1P36.11) MUTATED         0        4         8        9
  DEL PEAK  1(1P36.11) WILD-TYPE       1       31        32       35
D28V12, multiclass
           clus
vv          DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                             4                             31
  STAGE III                            8                             32
  STAGE IV                             9                             35

Clustering(29) Variable = Del Peak  2(1q32.1) mutation analysis
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1Q32.1) MUTATED   18  6
  DEL PEAK  2(1Q32.1) WILD-TYPE 69 25
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                           24                            94 
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                            6                            25 
$`DEL PEAK  2(1Q32.1) MUTATED`
TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20W TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YO 
       26.10        14.89         8.35         0.46         0.43         4.90 
TCGA-CU-A3YL TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ 
        8.09         1.81        75.32         2.20         7.82        10.49 
TCGA-DK-A3IS TCGA-FD-A3SL TCGA-FD-A3SR TCGA-G2-A2EK TCGA-G2-A3IE TCGA-G2-A3VY 
       37.84        10.98        19.79         5.65        20.12         0.82 
TCGA-GC-A3RC TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A40E TCGA-K4-A3WU 
        1.38         6.41         5.69         7.79         6.38         3.42 

$`DEL PEAK  2(1Q32.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.00        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3KJ 
        1.94         2.01         0.69        12.92         7.20         5.46 
TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.19         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IU 
       10.59         7.76         3.98         8.22         5.52        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 
        9.67         8.28        10.55       131.15        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
        8.94         7.96        32.02         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF 
        4.54        46.78         1.94         6.84         2.33        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM 
       26.50        26.93        32.78        17.26         7.04         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        2.24         1.32         4.50         1.02         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.69         2.10         3.12         5.82         6.38         7.56 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G 
        4.37         6.15         7.63         4.11         6.64         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        1.51         6.71         8.71         4.64 

  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                        75.32                        131.15 
  DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE 
                        7.100                         6.855 
[1] "0.4 - 75.3 (7.1)"  "0.1 - 131.2 (6.9)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK  2(1Q32.1) MUTATED"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK  2(1Q32.1) MUTATED"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK  2(1Q32.1) MUTATED"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  2(1Q32.1) WILD-TYPE"   "DEL PEAK  2(1Q32.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  2(1Q32.1) WILD-TYPE" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  2(1Q32.1) MUTATED" "DEL PEAK  2(1Q32.1) WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1Q32.1) MUTATED      2   22
  DEL PEAK  2(1Q32.1) WILD-TYPE   31   70
        clus
vv       DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  FEMALE                           2                            31
  MALE                            22                            70
D29V4, continuous
D29V5, continuous
D29V6, continuous
D29V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK  2(1Q32.1) MUTATED   13  1  9
  DEL PEAK  2(1Q32.1) WILD-TYPE 60  3 38
D29V8, multiclass
    clus
vv   DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  M0                          13                            60
  M1                           1                             3
  MX                           9                            38
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK  2(1Q32.1) MUTATED   11  2  5  1  4
  DEL PEAK  2(1Q32.1) WILD-TYPE 60 12 19  3  6
D29V9, multiclass
D29V10, continuous
D29V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  2(1Q32.1) MUTATED         0        9         4        8
  DEL PEAK  2(1Q32.1) WILD-TYPE       1       26        36       36
D29V12, multiclass
           clus
vv          DEL PEAK  2(1Q32.1) MUTATED DEL PEAK  2(1Q32.1) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                            9                            26
  STAGE III                           4                            36
  STAGE IV                            8                            36

Clustering(30) Variable = Del Peak  3(2q22.1) mutation analysis
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q22.1) MUTATED   24 12
  DEL PEAK  3(2Q22.1) WILD-TYPE 63 19
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           36                            82 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           12                            19 
$`DEL PEAK  3(2Q22.1) MUTATED`
TCGA-BL-A13I TCGA-BT-A20P TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA 
        7.33        17.85        14.89         5.06         8.35         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU 
        4.64         8.98         2.01        12.92         5.46         5.19 
TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IS 
        2.53         8.98         1.81        10.59         2.20        37.84 
TCGA-DK-A3IV TCGA-FD-A3B5 TCGA-FD-A3N6 TCGA-FD-A3SR TCGA-G2-A2EF TCGA-G2-A2EJ 
        9.67         8.94         7.96        19.79        49.91        26.50 
TCGA-G2-A2EL TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GD-A3OS 
       26.93         0.82         2.86         1.02         2.10         5.82 
TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-K4-A3WU 
        7.56         4.37         6.41         5.69         6.64         3.42 

$`DEL PEAK  3(2Q22.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         2.66         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20X 
       26.10        12.16        19.46         5.06         8.61         8.25 
TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO 
        3.65         1.94         0.46         0.43         0.69         4.90 
TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB 
        7.20         8.09         2.14        31.40         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 
      118.88       100.47         7.17         5.85         6.64         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT 
       75.32         3.98         7.82         8.22        10.49         5.52 
TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 
       11.51         8.28        10.55       131.15        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         6.87         4.01        11.05         8.94 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       32.02        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EO 
       46.78         1.94         6.84         2.33         5.65        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       17.26         7.04        20.12         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GU-A42P 
        1.38         2.50         1.08         7.69         3.12         6.38 
TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G 
        6.15         7.63         7.79         4.11         6.38         5.33 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        1.51         6.71         8.71         4.64 

  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                         0.82                          0.10 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                        49.91                        131.15 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                        6.525                         6.955 
[1] "0.8 - 49.9 (6.5)"  "0.1 - 131.2 (7.0)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  3(2Q22.1) WILD-TYPE"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  3(2Q22.1) MUTATED"   "DEL PEAK  3(2Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  3(2Q22.1) WILD-TYPE" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  3(2Q22.1) MUTATED" "DEL PEAK  3(2Q22.1) WILD-TYPE" 
[1] "hr=" "1.5"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q22.1) MUTATED     14   24
  DEL PEAK  3(2Q22.1) WILD-TYPE   19   68
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  FEMALE                          14                            19
  MALE                            24                            68
D30V4, continuous
D30V5, continuous
D30V6, continuous
D30V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK  3(2Q22.1) MUTATED   26  1 10
  DEL PEAK  3(2Q22.1) WILD-TYPE 47  3 37
D30V8, multiclass
    clus
vv   DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  M0                          26                            47
  M1                           1                             3
  MX                          10                            37
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK  3(2Q22.1) MUTATED   19  5  9  1  3
  DEL PEAK  3(2Q22.1) WILD-TYPE 52  9 15  3  7
D30V9, multiclass
D30V10, continuous
D30V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  3(2Q22.1) MUTATED         0       13         9       15
  DEL PEAK  3(2Q22.1) WILD-TYPE       1       22        31       29
D30V12, multiclass
           clus
vv          DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           13                            22
  STAGE III                           9                            31
  STAGE IV                           15                            29

Clustering(31) Variable = Del Peak  4(2q34) mutation analysis
D31V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  4(2Q34) MUTATED   35 15
  DEL PEAK  4(2Q34) WILD-TYPE 52 16
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                         50                          68 
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                         15                          16 
$`DEL PEAK  4(2Q34) MUTATED`
TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        2.66        26.10        14.89         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3KJ 
        5.88         4.64         8.98         0.43        12.92         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX 
        5.19         8.09         2.14       118.88       100.47         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IS 
       10.59         7.76         2.20         3.98         7.82        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FD-A3SN 
        5.52         9.67         8.32         8.94         8.94         6.81 
TCGA-FD-A3SR TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3VY TCGA-GC-A3BM 
       19.79        49.91         5.65        26.93         0.82         2.86 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GU-A42P TCGA-GV-A3JV 
        1.02         2.50         1.08         2.10         6.38         4.37 
TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-K4-A3WS 
        6.41         7.79         4.11         6.64         5.33         8.71 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

$`DEL PEAK  4(2Q34) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A2LD 
       12.16        17.85        19.46         5.06         8.61         3.65 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR 
        1.94         2.01         0.46         0.69         4.90         7.20 
TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE 
        2.53        31.40         8.98         7.04         8.91         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IU 
        5.85         6.64        75.32         8.22        10.49        11.51 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28        10.55       131.15        36.43         0.10         8.81 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        6.87         4.01        11.05         7.96        32.02        10.98 
TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43U 
        6.12         5.49         4.54        46.78         1.94         6.84 
TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        2.33        26.50        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GD-A2C5 TCGA-GD-A3OQ 
        2.24         1.32         4.50         1.38         7.69         3.12 
TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A40E 
        5.82         7.56         6.15         5.69         7.63         6.38 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                       0.43                        0.10 
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                     118.88                      131.15 
  DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE 
                      6.395                       7.105 
[1] "0.4 - 118.9 (6.4)" "0.1 - 131.2 (7.1)"
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK  4(2Q34) WILD-TYPE" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK  4(2Q34) MUTATED" "DEL PEAK  4(2Q34) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
"DEL PEAK  4(2Q34) WILD-TYPE"   "DEL PEAK  4(2Q34) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
  "DEL PEAK  4(2Q34) MUTATED"   "DEL PEAK  4(2Q34) MUTATED" 
[1] "hr=" "1.4"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(2Q34) MUTATED     13   41
  DEL PEAK  4(2Q34) WILD-TYPE   20   51
        clus
vv       DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  FEMALE                        13                          20
  MALE                          41                          51
D31V4, continuous
D31V5, continuous
D31V6, continuous
D31V7, continuous
                             vv
clus                          M0 M1 MX
  DEL PEAK  4(2Q34) MUTATED   33  1 19
  DEL PEAK  4(2Q34) WILD-TYPE 40  3 28
D31V8, multiclass
    clus
vv   DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  M0                        33                          40
  M1                         1                           3
  MX                        19                          28
                             vv
clus                          N0 N1 N2 N3 NX
  DEL PEAK  4(2Q34) MUTATED   29  7 12  1  4
  DEL PEAK  4(2Q34) WILD-TYPE 42  7 12  3  6
D31V9, multiclass
D31V10, continuous
D31V11, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  4(2Q34) MUTATED         0       17        14       20
  DEL PEAK  4(2Q34) WILD-TYPE       1       18        26       24
D31V12, multiclass
           clus
vv          DEL PEAK  4(2Q34) MUTATED DEL PEAK  4(2Q34) WILD-TYPE
  STAGE I                           0                           1
  STAGE II                         17                          18
  STAGE III                        14                          26
  STAGE IV                         20                          24

Clustering(32) Variable = Del Peak  5(2q37.1) mutation analysis
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(2Q37.1) MUTATED   44 16
  DEL PEAK  5(2Q37.1) WILD-TYPE 43 15
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                           60                            58 
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                           16                            15 
$`DEL PEAK  5(2Q37.1) MUTATED`
TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20V 
        2.66        19.00        26.10        19.46        14.89         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR 
        8.35         8.25         5.88         4.64         8.98         0.46 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
        0.43        12.92         7.20         5.46         5.19         8.09 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
        2.14       118.88       100.47         6.64         1.81        10.59 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        2.20         3.98         7.82        37.84         5.52        11.51 
TCGA-DK-A3IV TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FD-A3SN TCGA-FD-A3SR 
        9.67         8.32         8.94         8.94         6.81        19.79 
TCGA-FD-A3SS TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3VY TCGA-GC-A3BM 
        1.94        49.91         5.65        26.93         0.82         2.86 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP 
        4.50         1.38         1.02         2.50         1.08         2.10 
TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH 
        6.38         4.37         6.41         6.15         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        4.11         6.64         5.33         8.71         3.42         4.64 

$`DEL PEAK  5(2Q37.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O 
       12.79         7.33         6.74         6.58        11.93        12.16 
TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 
       17.85         5.06         8.61         3.65         1.94         2.01 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        0.69         4.90         2.53        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IN 
        8.91         7.17         5.85         7.76        75.32         8.22 
TCGA-DK-A3IQ TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 
       10.49         8.28        10.55       131.15        36.43         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.81         6.87         4.01        11.05         7.96        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43U 
       10.98         6.12         5.49         4.54        46.78         6.84 
TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        2.33        26.50        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q 
        2.24         1.32         7.69         3.12         5.82         7.56 
TCGA-GV-A3JZ TCGA-GV-A40E TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.69         6.38         1.51         6.71 

  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                       118.88                        131.15 
  DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE 
                        6.395                         7.250 
[1] "0.4 - 118.9 (6.4)" "0.1 - 131.2 (7.2)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  5(2Q37.1) WILD-TYPE" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK  5(2Q37.1) MUTATED" "DEL PEAK  5(2Q37.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
"DEL PEAK  5(2Q37.1) WILD-TYPE"   "DEL PEAK  5(2Q37.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK  5(2Q37.1) MUTATED"   "DEL PEAK  5(2Q37.1) MUTATED" 
[1] "hr=" "1.2"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.1) MUTATED     12   53
  DEL PEAK  5(2Q37.1) WILD-TYPE   21   39
        clus
vv       DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  FEMALE                          12                            21
  MALE                            53                            39
D32V4, continuous
D32V5, continuous
D32V6, continuous
D32V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK  5(2Q37.1) MUTATED   40  1 23
  DEL PEAK  5(2Q37.1) WILD-TYPE 33  3 24
D32V8, multiclass
    clus
vv   DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  M0                          40                            33
  M1                           1                             3
  MX                          23                            24
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK  5(2Q37.1) MUTATED   37  7 15  1  4
  DEL PEAK  5(2Q37.1) WILD-TYPE 34  7  9  3  6
D32V9, multiclass
D32V10, continuous
D32V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  5(2Q37.1) MUTATED         0       21        17       23
  DEL PEAK  5(2Q37.1) WILD-TYPE       1       14        23       21
D32V12, multiclass
           clus
vv          DEL PEAK  5(2Q37.1) MUTATED DEL PEAK  5(2Q37.1) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           21                            14
  STAGE III                          17                            23
  STAGE IV                           23                            21

Clustering(33) Variable = Del Peak  6(3p21.31) mutation analysis
D33V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  6(3P21.31) MUTATED   28 11
  DEL PEAK  6(3P21.31) WILD-TYPE 59 20
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            39                             79 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            11                             20 
$`DEL PEAK  6(3P21.31) MUTATED`
TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20X TCGA-C4-A0EZ 
        6.74        19.00        14.89         5.06         8.25         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        1.94         0.43        12.92         4.90         7.20         5.46 
TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IQ 
        8.09        31.40         8.91         7.76         7.82        10.49 
TCGA-DK-A3WX TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-G2-A2EF 
       10.55        36.43         8.32         6.87         8.94        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM 
       26.50        26.93        17.26         7.04         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GU-A42Q TCGA-GV-A3JW 
        2.24         4.50         2.50         1.08         7.56         6.41 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        6.71         8.71         4.64 

$`DEL PEAK  6(3P21.31) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N 
       12.79         7.33         2.66         6.58        11.93        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W 
       12.16        17.85        19.46         5.06         8.61         8.35 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
        5.88         3.65         4.64         2.01         0.46         0.69 
TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC 
        5.19         2.53         2.14         8.98         7.04       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT 
       75.32         2.20         3.98         8.22        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 
       11.51         9.67         8.28       131.15         0.10         8.81 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        8.94         4.01        11.05         7.96        32.02        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        6.12         6.81         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3IE 
        1.94         6.84         2.33         5.65        32.78        20.12 
TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.32         1.38         1.02         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        5.82         6.38         4.37         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.11         6.64         6.38         5.33         1.51 
TCGA-K4-A3WU 
        3.42 

  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                          0.43                           0.10 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                         49.91                         131.15 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                          7.76                           6.58 
[1] "0.4 - 49.9 (7.8)"  "0.1 - 131.2 (6.6)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
[1] "hr=" "1"  
D33V2, continuous
D33V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3P21.31) MUTATED     12   28
  DEL PEAK  6(3P21.31) WILD-TYPE   21   64
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  FEMALE                           12                             21
  MALE                             28                             64
D33V4, continuous
D33V5, continuous
D33V6, continuous
D33V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK  6(3P21.31) MUTATED   24  2 13
  DEL PEAK  6(3P21.31) WILD-TYPE 49  2 34
D33V8, multiclass
    clus
vv   DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  M0                           24                             49
  M1                            2                              2
  MX                           13                             34
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK  6(3P21.31) MUTATED   24  5  5  1  3
  DEL PEAK  6(3P21.31) WILD-TYPE 47  9 19  3  7
D33V9, multiclass
D33V10, continuous
D33V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  6(3P21.31) MUTATED         0       13        13       12
  DEL PEAK  6(3P21.31) WILD-TYPE       1       22        27       32
D33V12, multiclass
           clus
vv          DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                            13                             22
  STAGE III                           13                             27
  STAGE IV                            12                             32

Clustering(34) Variable = Del Peak  7(3p14.2) mutation analysis
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(3P14.2) MUTATED   30  9
  DEL PEAK  7(3P14.2) WILD-TYPE 57 22
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                           39                            79 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                            9                            22 
$`DEL PEAK  7(3P14.2) MUTATED`
TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-C4-A0EZ TCGA-C4-A0F0 
       14.89         5.06         8.35         8.25         8.98         1.94 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A6 
        0.43        12.92         7.20         5.46         8.09        31.40 
TCGA-DK-A1AB TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3WX 
        8.91         7.76         7.82        10.49        37.84        10.55 
TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SN TCGA-G2-A2EF 
       36.43         8.32         6.87         8.94         6.81        49.91 
TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       26.50        17.26         7.04        20.12         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GU-A42Q TCGA-GV-A3JW 
        2.24         4.50         2.50         1.08         7.56         6.41 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        6.71         8.71         4.64 

$`DEL PEAK  7(3P14.2) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20U TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.61         5.88         3.65         4.64         2.01         0.46 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 
        0.69         4.90         5.19         2.53         2.14         8.98 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN 
        1.81        10.59        75.32         2.20         3.98         8.22 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E7-A3Y1 
        5.52        11.51         9.67         8.28       131.15         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.81         8.94         4.01        11.05         7.96        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       10.98         6.12         5.49         4.54        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        1.94         6.84         2.33         5.65        26.93        32.78 
TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.32         1.38         1.02         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        5.82         6.38         4.37         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.11         6.64         6.38         5.33         1.51 
TCGA-K4-A3WU 
        3.42 

  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                        49.91                        131.15 
  DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE 
                         7.82                          6.38 
[1] "0.4 - 49.9 (7.8)"  "0.1 - 131.2 (6.4)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  7(3P14.2) MUTATED" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  7(3P14.2) WILD-TYPE" "DEL PEAK  7(3P14.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  7(3P14.2) MUTATED"   "DEL PEAK  7(3P14.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  7(3P14.2) WILD-TYPE"   "DEL PEAK  7(3P14.2) MUTATED" 
[1] "hr=" "1.4"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P14.2) MUTATED     12   29
  DEL PEAK  7(3P14.2) WILD-TYPE   21   63
        clus
vv       DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  FEMALE                          12                            21
  MALE                            29                            63
D34V4, continuous
D34V5, continuous
D34V6, continuous
D34V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK  7(3P14.2) MUTATED   24  2 14
  DEL PEAK  7(3P14.2) WILD-TYPE 49  2 33
D34V8, multiclass
    clus
vv   DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  M0                          24                            49
  M1                           2                             2
  MX                          14                            33
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK  7(3P14.2) MUTATED   24  5  4  2  4
  DEL PEAK  7(3P14.2) WILD-TYPE 47  9 20  2  6
D34V9, multiclass
D34V10, continuous
D34V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  7(3P14.2) MUTATED         0       14        12       13
  DEL PEAK  7(3P14.2) WILD-TYPE       1       21        28       31
D34V12, multiclass
           clus
vv          DEL PEAK  7(3P14.2) MUTATED DEL PEAK  7(3P14.2) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           14                            21
  STAGE III                          12                            28
  STAGE IV                           13                            31

Clustering(35) Variable = Del Peak  8(3p12.3) mutation analysis
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(3P12.3) MUTATED   26  8
  DEL PEAK  8(3P12.3) WILD-TYPE 61 23
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                           34                            84 
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                            8                            23 
$`DEL PEAK  8(3P12.3) MUTATED`
TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20X TCGA-C4-A0EZ TCGA-C4-A0F0 
       26.10        14.89         5.06         8.25         8.98         1.94 
TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1AB 
       12.92         7.20         5.46         8.09        31.40         8.91 
TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3WX TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3B6 
        7.76         7.82        10.55        36.43         8.32         6.87 
TCGA-FD-A3N5 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A3IB TCGA-G2-A3VY 
        8.94        49.91        26.50         5.65         7.04         0.82 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GV-A3JW 
        2.86         2.24         4.50         2.50         1.08         6.41 
TCGA-GV-A3QH TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        7.79         6.71         8.71         4.64 

$`DEL PEAK  8(3P12.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.00        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.35         5.88         3.65         4.64         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 
        0.43         0.69         4.90         5.19         2.53         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         7.04       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        6.64         1.81        10.59        75.32         2.20         3.98 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        37.84         5.52        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 
        8.28       131.15         0.10         8.81         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
       11.05         7.96        32.02        10.98         6.12         6.81 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U 
        5.49         4.54        46.78        19.79         1.94         6.84 
TCGA-FT-A3EE TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3OO 
        2.33        26.93        32.78        17.26        20.12         1.32 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        1.38         1.02         7.69         2.10         3.12         5.82 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        6.38         7.56         4.37         6.15         5.69         7.63 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WU 
        4.11         6.64         6.38         5.33         1.51         3.42 

  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                         0.82                          0.10 
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                        49.91                        131.15 
  DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE 
                        7.775                         6.640 
[1] "0.8 - 49.9 (7.8)"  "0.1 - 131.2 (6.6)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  8(3P12.3) MUTATED" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  8(3P12.3) WILD-TYPE" "DEL PEAK  8(3P12.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  8(3P12.3) MUTATED"   "DEL PEAK  8(3P12.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  8(3P12.3) WILD-TYPE"   "DEL PEAK  8(3P12.3) MUTATED" 
[1] "hr=" "1.2"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(3P12.3) MUTATED     11   25
  DEL PEAK  8(3P12.3) WILD-TYPE   22   67
        clus
vv       DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  FEMALE                          11                            22
  MALE                            25                            67
D35V4, continuous
D35V5, continuous
D35V6, continuous
D35V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(3P12.3) MUTATED   19  2 14
  DEL PEAK  8(3P12.3) WILD-TYPE 54  2 33
D35V8, multiclass
    clus
vv   DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  M0                          19                            54
  M1                           2                             2
  MX                          14                            33
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK  8(3P12.3) MUTATED   19  5  4  2  4
  DEL PEAK  8(3P12.3) WILD-TYPE 52  9 20  2  6
D35V9, multiclass
D35V10, continuous
D35V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  8(3P12.3) MUTATED         0       12        11       12
  DEL PEAK  8(3P12.3) WILD-TYPE       1       23        29       32
D35V12, multiclass
           clus
vv          DEL PEAK  8(3P12.3) MUTATED DEL PEAK  8(3P12.3) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           12                            23
  STAGE III                          11                            29
  STAGE IV                           12                            32

Clustering(36) Variable = Del Peak  9(4q22.1) mutation analysis
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(4Q22.1) MUTATED   34 12
  DEL PEAK  9(4Q22.1) WILD-TYPE 53 19
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           46                            72 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                           12                            19 
$`DEL PEAK  9(4Q22.1) MUTATED`
TCGA-BL-A13I TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A2LD TCGA-BT-A3PH 
        7.33         5.06         8.61         5.06         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.43        12.92         4.90 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 
        7.20         2.53         8.98       100.47         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
        7.76        75.32         2.20         7.82         8.22        10.49 
TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3SL 
        5.52        36.43         8.81         6.87         4.01        10.98 
TCGA-FD-A3SO TCGA-G2-A2EF TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
        5.49        49.91        26.93        32.78        17.26         7.04 
TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GD-A2C5 TCGA-GU-A42Q TCGA-GV-A3JV 
        2.86         1.32         4.50         7.69         7.56         4.37 
TCGA-GV-A3QH TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        7.79         6.71         8.71         4.64 

$`DEL PEAK  9(4Q22.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         2.66         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W 
       26.10        12.16        17.85        19.46        14.89         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-CF-A27C TCGA-CU-A3KJ TCGA-CU-A3QU 
        8.25         5.88         8.98         0.69         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        8.09         2.14        31.40         7.04         8.91       118.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IU 
        7.17         5.85         6.64         3.98        37.84        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B4 
        9.67         8.28        10.55       131.15         0.10         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM 
        8.94        11.05         8.94         7.96        32.02         6.12 
TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U 
        6.81         4.54        46.78        19.79         1.94         6.84 
TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 
        2.33        26.50         5.65        20.12         0.82         2.24 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.38         1.02         2.50         1.08         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        5.82         6.38         6.41         6.15         5.69         7.63 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WU 
        4.11         6.64         6.38         5.33         1.51         3.42 

  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                       100.47                        131.15 
  DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE 
                        7.120                         6.775 
[1] "0.4 - 100.5 (7.1)" "0.1 - 131.2 (6.8)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK  9(4Q22.1) MUTATED" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK  9(4Q22.1) WILD-TYPE" "DEL PEAK  9(4Q22.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK  9(4Q22.1) MUTATED"   "DEL PEAK  9(4Q22.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK  9(4Q22.1) WILD-TYPE"   "DEL PEAK  9(4Q22.1) MUTATED" 
[1] "hr=" "1.1"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(4Q22.1) MUTATED     16   33
  DEL PEAK  9(4Q22.1) WILD-TYPE   17   59
        clus
vv       DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  FEMALE                          16                            17
  MALE                            33                            59
D36V4, continuous
D36V5, continuous
D36V6, continuous
D36V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK  9(4Q22.1) MUTATED   34  2 13
  DEL PEAK  9(4Q22.1) WILD-TYPE 39  2 34
D36V8, multiclass
    clus
vv   DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  M0                          34                            39
  M1                           2                             2
  MX                          13                            34
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK  9(4Q22.1) MUTATED   27  6 11  1  4
  DEL PEAK  9(4Q22.1) WILD-TYPE 44  8 13  3  6
D36V9, multiclass
D36V10, continuous
D36V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK  9(4Q22.1) MUTATED         0       14        14       19
  DEL PEAK  9(4Q22.1) WILD-TYPE       1       21        26       25
D36V12, multiclass
           clus
vv          DEL PEAK  9(4Q22.1) MUTATED DEL PEAK  9(4Q22.1) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           14                            21
  STAGE III                          14                            26
  STAGE IV                           19                            25

Clustering(37) Variable = Del Peak 10(4q34.2) mutation analysis
D37V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(4Q34.2) MUTATED   37 15
  DEL PEAK 10(4Q34.2) WILD-TYPE 50 16
  DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE 
                           52                            66 
  DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE 
                           15                            16 
$`DEL PEAK 10(4Q34.2) MUTATED`
TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W 
        2.66        26.10         5.06        14.89         5.06         8.35 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN 
        3.65         4.64         1.94         0.46         0.43        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A1AE 
        4.90         7.20         2.53         8.98       100.47         7.17 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
        1.81        10.59         7.76        75.32         2.20         7.82 
TCGA-DK-A3IN TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 
        8.22         5.52        36.43         8.81         6.87         4.01 
TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SO TCGA-G2-A2EF TCGA-G2-A2EL TCGA-G2-A3IB 
       10.98         6.81         5.49        49.91        26.93         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
       20.12         0.82         2.86         1.32         4.50         1.38 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QH 
        2.50         7.69         7.56         4.37         6.41         7.79 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        5.33         6.71         8.71         4.64 

$`DEL PEAK 10(4Q34.2) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA 
       12.16        17.85        19.46         8.61         8.25         5.88 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
        8.98         2.01         0.69         5.46         5.19         8.09 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AF 
        2.14        31.40         7.04         8.91       118.88         5.85 
TCGA-DK-A1AG TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV 
        6.64         3.98        10.49        37.84        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B5 
        8.28        10.55       131.15         0.10         8.32         8.94 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SP 
       11.05         8.94         7.96        32.02         6.12         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EJ 
       46.78        19.79         1.94         6.84         2.33        26.50 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GC-A3RD TCGA-GC-A3YS 
        5.65        32.78        17.26         2.24         1.02         1.08 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JX TCGA-GV-A3JZ 
        2.10         3.12         5.82         6.38         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WU 
        7.63         4.11         6.64         6.38         1.51         3.42 

  DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE 
                       100.47                        131.15 
  DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE 
                        6.760                         7.185 
[1] "0.4 - 100.5 (6.8)" "0.1 - 131.2 (7.2)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 10(4Q34.2) WILD-TYPE" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 10(4Q34.2) MUTATED" "DEL PEAK 10(4Q34.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 10(4Q34.2) MUTATED"   "DEL PEAK 10(4Q34.2) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 10(4Q34.2) WILD-TYPE"   "DEL PEAK 10(4Q34.2) MUTATED" 
[1] "hr=" "1.4"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4Q34.2) MUTATED     14   41
  DEL PEAK 10(4Q34.2) WILD-TYPE   19   51
        clus
vv       DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE
  FEMALE                          14                            19
  MALE                            41                            51
D37V4, continuous
D37V5, continuous
D37V6, continuous
D37V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(4Q34.2) MUTATED   32  2 20
  DEL PEAK 10(4Q34.2) WILD-TYPE 41  2 27
D37V8, multiclass
    clus
vv   DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE
  M0                          32                            41
  M1                           2                             2
  MX                          20                            27
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 10(4Q34.2) MUTATED   28  7 13  1  5
  DEL PEAK 10(4Q34.2) WILD-TYPE 43  7 11  3  5
D37V9, multiclass
D37V10, continuous
D37V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 10(4Q34.2) MUTATED         0       18        12       22
  DEL PEAK 10(4Q34.2) WILD-TYPE       1       17        28       22
D37V12, multiclass
           clus
vv          DEL PEAK 10(4Q34.2) MUTATED DEL PEAK 10(4Q34.2) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           18                            17
  STAGE III                          12                            28
  STAGE IV                           22                            22

Clustering(38) Variable = Del Peak 11(5q11.2) mutation analysis
D38V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(5Q11.2) MUTATED   44 15
  DEL PEAK 11(5Q11.2) WILD-TYPE 43 16
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           59                            59 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                           15                            16 
$`DEL PEAK 11(5Q11.2) MUTATED`
TCGA-BL-A0C8 TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20T 
       12.79         6.58        19.00        26.10         5.06        14.89 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F6 
        5.06         8.35         5.88         3.65         4.64         2.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AD 
        0.46         0.43         5.19         2.14         8.98       100.47 
TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
       10.59        75.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WX 
       10.49        37.84         5.52        11.51         9.67        10.55 
TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SL TCGA-FD-A3SM 
       36.43         8.94         6.87         8.94        10.98         6.12 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A2EL TCGA-G2-A3IB 
       19.79         1.94         6.84        49.91        26.93         7.04 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        0.82         2.86         1.32         1.08         7.69         2.10 
TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.38         6.41         6.15         7.63         7.79         4.11 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV 
        6.38         5.33         6.71         3.42         4.64 

$`DEL PEAK 11(5Q11.2) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
        7.33         2.66         6.74        11.93        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A27C 
       19.46         8.61         8.25         8.98         1.94         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 
       12.92         4.90         7.20         5.46         8.09         2.53 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF 
       31.40         7.04         8.91       118.88         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E7-A3Y1 
        6.64         1.81         7.76         8.28       131.15         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.81         8.32         4.01        11.05         7.96        32.02 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FT-A3EE TCGA-G2-A2EJ 
        6.81         5.49         4.54        46.78         2.33        26.50 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3RB 
        5.65        32.78        17.26        20.12         2.24         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q 
        1.38         1.02         2.50         3.12         5.82         7.56 
TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS 
        4.37         5.69         6.64         1.51         8.71 

  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                       100.47                        131.15 
  DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE 
                         6.71                          7.17 
[1] "0.4 - 100.5 (6.7)" "0.1 - 131.2 (7.2)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 11(5Q11.2) WILD-TYPE" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 11(5Q11.2) WILD-TYPE"   "DEL PEAK 11(5Q11.2) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 11(5Q11.2) MUTATED" "DEL PEAK 11(5Q11.2) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 11(5Q11.2) MUTATED"   "DEL PEAK 11(5Q11.2) MUTATED" 
[1] "hr=" "1"  
D38V2, continuous
D38V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(5Q11.2) MUTATED     14   50
  DEL PEAK 11(5Q11.2) WILD-TYPE   19   42
        clus
vv       DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  FEMALE                          14                            19
  MALE                            50                            42
D38V4, continuous
D38V5, continuous
D38V6, continuous
D38V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(5Q11.2) MUTATED   34  3 26
  DEL PEAK 11(5Q11.2) WILD-TYPE 39  1 21
D38V8, multiclass
    clus
vv   DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  M0                          34                            39
  M1                           3                             1
  MX                          26                            21
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 11(5Q11.2) MUTATED   30  9 14  2  8
  DEL PEAK 11(5Q11.2) WILD-TYPE 41  5 10  2  2
D38V9, multiclass
D38V10, continuous
D38V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 11(5Q11.2) MUTATED         1       23        11       25
  DEL PEAK 11(5Q11.2) WILD-TYPE       0       12        29       19
D38V12, multiclass
           clus
vv          DEL PEAK 11(5Q11.2) MUTATED DEL PEAK 11(5Q11.2) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           23                            12
  STAGE III                          11                            29
  STAGE IV                           25                            19

Clustering(39) Variable = Del Peak 12(5q35.1) mutation analysis
D39V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(5Q35.1) MUTATED   43 14
  DEL PEAK 12(5Q35.1) WILD-TYPE 44 17
  DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE 
                           57                            61 
  DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE 
                           14                            17 
$`DEL PEAK 12(5Q35.1) MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A20W 
        6.58        19.00        26.10         5.06         5.06         8.35 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CU-A3QU TCGA-DK-A1A3 
        3.65         4.64         2.01         0.46         5.19         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IL 
        2.14         7.04       100.47        10.59        75.32         3.98 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3WX TCGA-E5-A2PC 
        8.22        10.49        37.84         5.52        10.55        36.43 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM 
        8.94         6.87         8.94        32.02        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A2EL 
        6.81        19.79         1.94         6.84        49.91        26.93 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.82         2.86         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42P 
        1.38         1.02         1.08         7.69         2.10         6.38 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E 
        6.41         6.15         5.69         7.63         7.79         6.38 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU 
        5.33         6.71         3.42 

$`DEL PEAK 12(5Q35.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20O 
       12.79         7.33         2.66         6.74        11.93        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA 
       17.85        19.46        14.89         8.61         8.25         5.88 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        8.98         1.94         0.43         0.69        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AB 
        7.20         5.46         8.09        31.40         8.98         8.91 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
      118.88         7.17         5.85         6.64         1.81         7.76 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
        2.20         7.82        11.51         9.67         8.28       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
        0.10         8.81         8.32         4.01        11.05         7.96 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK 
        5.49         4.54        46.78         2.33        26.50         5.65 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS 
       32.78        17.26         2.24         2.50         3.12         5.82 
TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS 
        7.56         4.37         4.11         6.64         1.51         8.71 
TCGA-K4-A3WV 
        4.64 

  DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE 
                         0.46                          0.10 
  DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE 
                       100.47                        131.15 
  DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE 
                         6.58                          7.56 
[1] "0.5 - 100.5 (6.6)" "0.1 - 131.2 (7.6)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 12(5Q35.1) WILD-TYPE" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 12(5Q35.1) MUTATED"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 12(5Q35.1) WILD-TYPE"   "DEL PEAK 12(5Q35.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 12(5Q35.1) MUTATED" "DEL PEAK 12(5Q35.1) WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(5Q35.1) MUTATED     12   50
  DEL PEAK 12(5Q35.1) WILD-TYPE   21   42
        clus
vv       DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE
  FEMALE                          12                            21
  MALE                            50                            42
D39V4, continuous
D39V5, continuous
D39V6, continuous
D39V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(5Q35.1) MUTATED   30  3 28
  DEL PEAK 12(5Q35.1) WILD-TYPE 43  1 19
D39V8, multiclass
    clus
vv   DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE
  M0                          30                            43
  M1                           3                             1
  MX                          28                            19
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 12(5Q35.1) MUTATED   30  8 13  3  7
  DEL PEAK 12(5Q35.1) WILD-TYPE 41  6 11  1  3
D39V9, multiclass
D39V10, continuous
D39V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 12(5Q35.1) MUTATED         0       23        11       25
  DEL PEAK 12(5Q35.1) WILD-TYPE       1       12        29       19
D39V12, multiclass
           clus
vv          DEL PEAK 12(5Q35.1) MUTATED DEL PEAK 12(5Q35.1) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           23                            12
  STAGE III                          11                            29
  STAGE IV                           25                            19

Clustering(40) Variable = Del Peak 13(6p25.3) mutation analysis
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(6P25.3) MUTATED   27  6
  DEL PEAK 13(6P25.3) WILD-TYPE 60 25
  DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE 
                           33                            85 
  DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE 
                            6                            25 
$`DEL PEAK 13(6P25.3) MUTATED`
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-CU-A0YR 
        5.06         8.25         5.88         3.65         4.64         7.20 
TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A2HX TCGA-DK-A2I1 
       31.40         8.91       118.88         7.17         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IT TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 
        7.76         3.98         5.52         8.32         6.87         4.01 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A43U TCGA-G2-A2EO 
       32.02        10.98         6.81        46.78         6.84        32.78 
TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        2.10         5.82         5.69         7.63         7.79         4.11 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HQ 
        6.64         6.38         6.71 

$`DEL PEAK 13(6P25.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
       14.89         8.61         8.35         8.98         1.94         2.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ 
        0.46         0.43         0.69        12.92         4.90         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.19         8.09         2.53         2.14         8.98         7.04 
TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
      100.47         5.85         6.64        75.32         2.20         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
        8.22        10.49        37.84        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 
       10.55       131.15        36.43         0.10         8.81         8.94 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
       11.05         8.94         7.96         6.12         5.49         4.54 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
       19.79         1.94         2.33        49.91        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       26.93        17.26         7.04        20.12         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24         1.32         4.50         1.38         1.02         2.50 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV 
        1.08         7.69         3.12         6.38         7.56         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        6.41         6.15         5.33         1.51         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

  DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE 
                         1.81                          0.10 
  DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE 
                       118.88                        131.15 
  DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE 
                         6.84                          7.04 
[1] "1.8 - 118.9 (6.8)" "0.1 - 131.2 (7.0)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 13(6P25.3) WILD-TYPE"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK 13(6P25.3) MUTATED"   "DEL PEAK 13(6P25.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 13(6P25.3) MUTATED" "DEL PEAK 13(6P25.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 13(6P25.3) WILD-TYPE" "DEL PEAK 13(6P25.3) WILD-TYPE" 
[1] "hr=" "1.6"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(6P25.3) MUTATED     12   22
  DEL PEAK 13(6P25.3) WILD-TYPE   21   70
        clus
vv       DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE
  FEMALE                          12                            21
  MALE                            22                            70
D40V4, continuous
D40V5, continuous
D40V6, continuous
D40V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 13(6P25.3) MUTATED   17  2 15
  DEL PEAK 13(6P25.3) WILD-TYPE 56  2 32
D40V8, multiclass
    clus
vv   DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE
  M0                          17                            56
  M1                           2                             2
  MX                          15                            32
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 13(6P25.3) MUTATED   13  2 12  2  4
  DEL PEAK 13(6P25.3) WILD-TYPE 58 12 12  2  6
D40V9, multiclass
D40V10, continuous
D40V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 13(6P25.3) MUTATED         0        7         8       19
  DEL PEAK 13(6P25.3) WILD-TYPE       1       28        32       25
D40V12, multiclass
           clus
vv          DEL PEAK 13(6P25.3) MUTATED DEL PEAK 13(6P25.3) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                            7                            28
  STAGE III                           8                            32
  STAGE IV                           19                            25

Clustering(41) Variable = Del Peak 14(6q21) mutation analysis
D41V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 14(6Q21) MUTATED   37 10
  DEL PEAK 14(6Q21) WILD-TYPE 50 21
  DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE 
                         47                          71 
  DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE 
                         10                          21 
$`DEL PEAK 14(6Q21) MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A2LD TCGA-BT-A3PH 
       19.00        26.10        14.89         5.06         3.65         4.64 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A6 
        1.94         0.46         0.69         5.19         2.53        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        8.98         8.91         1.81        10.59         7.76        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC 
        2.20         3.98        10.49        37.84         5.52        36.43 
TCGA-FD-A3B5 TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        8.94        10.98         6.81        46.78        19.79         1.94 
TCGA-FD-A43U TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 
        6.84        32.78        17.26        20.12         0.82         2.24 
TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF 
        1.02         2.10         6.38         6.41         6.15         7.63 
TCGA-GV-A3QH TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        7.79         6.38         5.33         6.71         4.64 

$`DEL PEAK 14(6Q21) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W 
       12.16        17.85        19.46         5.06         8.61         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN 
        8.25         5.88         8.98         2.01         0.43        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1AA 
        4.90         7.20         5.46         8.09         2.14         7.04 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A3IM 
      118.88       100.47         7.17         5.85         6.64         7.82 
TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        8.22        11.51         9.67         8.28        10.55       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
        8.94         7.96        32.02         6.12         5.49         4.54 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB 
        2.33        49.91        26.50         5.65        26.93         7.04 
TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS 
        2.86         1.32         4.50         1.38         2.50         1.08 
TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JZ 
        7.69         3.12         5.82         7.56         4.37         5.69 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        4.11         6.64         1.51         8.71         3.42 

  DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE 
                       0.46                        0.10 
  DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE 
                      75.32                      131.15 
  DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE 
                       6.71                        7.04 
[1] "0.5 - 75.3 (6.7)"  "0.1 - 131.2 (7.0)"
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK 14(6Q21) WILD-TYPE" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 14(6Q21) MUTATED"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 14(6Q21) MUTATED" "DEL PEAK 14(6Q21) WILD-TYPE" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"DEL PEAK 14(6Q21) WILD-TYPE"   "DEL PEAK 14(6Q21) MUTATED" 
[1] "hr=" "1.7"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 14(6Q21) MUTATED     13   38
  DEL PEAK 14(6Q21) WILD-TYPE   20   54
        clus
vv       DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE
  FEMALE                        13                          20
  MALE                          38                          54
D41V4, continuous
D41V5, continuous
D41V6, continuous
D41V7, continuous
                             vv
clus                          M0 M1 MX
  DEL PEAK 14(6Q21) MUTATED   28  2 20
  DEL PEAK 14(6Q21) WILD-TYPE 45  2 27
D41V8, multiclass
    clus
vv   DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE
  M0                        28                          45
  M1                         2                           2
  MX                        20                          27
                             vv
clus                          N0 N1 N2 N3 NX
  DEL PEAK 14(6Q21) MUTATED   19  8 14  2  6
  DEL PEAK 14(6Q21) WILD-TYPE 52  6 10  2  4
D41V9, multiclass
D41V10, continuous
D41V11, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 14(6Q21) MUTATED         0       15         7       26
  DEL PEAK 14(6Q21) WILD-TYPE       1       20        33       18
D41V12, multiclass
           clus
vv          DEL PEAK 14(6Q21) MUTATED DEL PEAK 14(6Q21) WILD-TYPE
  STAGE I                           0                           1
  STAGE II                         15                          20
  STAGE III                         7                          33
  STAGE IV                         26                          18

Clustering(42) Variable = Del Peak 15(6q27) mutation analysis
D42V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 15(6Q27) MUTATED   40 10
  DEL PEAK 15(6Q27) WILD-TYPE 47 21
  DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE 
                         50                          68 
  DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE 
                         10                          21 
$`DEL PEAK 15(6Q27) MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 
       19.00        26.10         5.06         3.65         4.64         1.94 
TCGA-CF-A1HR TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1AB 
        0.46         7.20         5.19         2.53        31.40         8.91 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
      100.47         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC 
        3.98         8.22        10.49        37.84         5.52        36.43 
TCGA-FD-A3B5 TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        8.94        10.98         6.81        46.78        19.79         1.94 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RB 
       32.78        17.26        20.12         0.82         2.24         4.50 
TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX 
        1.02         7.69         2.10         6.38         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G 
        5.69         7.63         7.79         4.11         6.38         5.33 
TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.71         8.71 

$`DEL PEAK 15(6Q27) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HS 
        8.35         8.25         5.88         8.98         2.01         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A5 
        0.69        12.92         4.90         5.46         8.09         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.98         7.04       118.88         7.17         5.85         6.64 
TCGA-DK-A3IM TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        7.82        11.51         9.67         8.28        10.55       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
        8.94         7.96        32.02         6.12         5.49         4.54 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        6.84         2.33        49.91        26.50         5.65        26.93 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS 
        7.04         2.86         1.32         1.38         2.50         1.08 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3QK TCGA-H4-A2HO 
        3.12         5.82         7.56         4.37         6.64         1.51 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

  DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE 
                       0.46                        0.10 
  DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE 
                     100.47                      131.15 
  DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE 
                      6.760                       6.955 
[1] "0.5 - 100.5 (6.8)" "0.1 - 131.2 (7.0)"
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
"DEL PEAK 15(6Q27) WILD-TYPE"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
  "DEL PEAK 15(6Q27) MUTATED" "DEL PEAK 15(6Q27) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 15(6Q27) MUTATED"   "DEL PEAK 15(6Q27) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
"DEL PEAK 15(6Q27) WILD-TYPE" "DEL PEAK 15(6Q27) WILD-TYPE" 
[1] "hr=" "1.9"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(6Q27) MUTATED     12   41
  DEL PEAK 15(6Q27) WILD-TYPE   21   51
        clus
vv       DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE
  FEMALE                        12                          21
  MALE                          41                          51
D42V4, continuous
D42V5, continuous
D42V6, continuous
D42V7, continuous
                             vv
clus                          M0 M1 MX
  DEL PEAK 15(6Q27) MUTATED   28  2 22
  DEL PEAK 15(6Q27) WILD-TYPE 45  2 25
D42V8, multiclass
    clus
vv   DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE
  M0                        28                          45
  M1                         2                           2
  MX                        22                          25
                             vv
clus                          N0 N1 N2 N3 NX
  DEL PEAK 15(6Q27) MUTATED   21  7 15  3  5
  DEL PEAK 15(6Q27) WILD-TYPE 50  7  9  1  5
D42V9, multiclass
D42V10, continuous
D42V11, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 15(6Q27) MUTATED         0       13        11       27
  DEL PEAK 15(6Q27) WILD-TYPE       1       22        29       17
D42V12, multiclass
           clus
vv          DEL PEAK 15(6Q27) MUTATED DEL PEAK 15(6Q27) WILD-TYPE
  STAGE I                           0                           1
  STAGE II                         13                          22
  STAGE III                        11                          29
  STAGE IV                         27                          17

Clustering(43) Variable = Del Peak 16(8p23.3) mutation analysis
D43V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 16(8P23.3) MUTATED   48 15
  DEL PEAK 16(8P23.3) WILD-TYPE 39 16
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                           63                            55 
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                           15                            16 
$`DEL PEAK 16(8P23.3) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20V TCGA-BT-A20W TCGA-C4-A0EZ 
       12.79         2.66        19.00         5.06         8.35         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3KJ 
        1.94         0.43         0.69        12.92         7.20         5.46 
TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD 
        5.19         2.53         2.14         8.98       118.88       100.47 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        1.81        10.59        75.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-FD-A3B4 
        8.22        10.49         5.52        11.51         9.67         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3SL TCGA-FD-A3SM 
        8.94         6.87         4.01         8.94        10.98         6.12 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-G2-A2EF TCGA-G2-A2EK 
        5.49         4.54        46.78        19.79        49.91         5.65 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
       20.12         0.82         4.50         1.38         1.02         2.50 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
        1.08         7.69         2.10         3.12         5.82         6.38 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ 
        6.15         5.69         7.79         6.38         5.33         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

$`DEL PEAK 16(8P23.3) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        11.93        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X 
       17.85        19.46         5.06        14.89         8.61         8.25 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CU-A0YO 
        5.88         3.65         4.64         2.01         0.46         4.90 
TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF 
        8.09        31.40         7.04         8.91         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IS TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        6.64         7.76        37.84         8.28        10.55       131.15 
TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
       36.43         0.10         8.81        11.05         7.96        32.02 
TCGA-FD-A3SN TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EL 
        6.81         1.94         6.84         2.33        26.50        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78        17.26         7.04         2.86         2.24         1.32 
TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK 
        7.56         4.37         6.41         7.63         4.11         6.64 
TCGA-H4-A2HO 
        1.51 

  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                       118.88                        131.15 
  DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE 
                         6.15                          7.33 
[1] "0.4 - 118.9 (6.2)" "0.1 - 131.2 (7.3)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 16(8P23.3) WILD-TYPE" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 16(8P23.3) WILD-TYPE"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 16(8P23.3) MUTATED" "DEL PEAK 16(8P23.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 16(8P23.3) MUTATED"   "DEL PEAK 16(8P23.3) MUTATED" 
[1] "hr=" "1"  
D43V2, continuous
D43V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(8P23.3) MUTATED     15   50
  DEL PEAK 16(8P23.3) WILD-TYPE   18   42
        clus
vv       DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  FEMALE                          15                            18
  MALE                            50                            42
D43V4, continuous
D43V5, continuous
D43V6, continuous
D43V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 16(8P23.3) MUTATED   34  4 26
  DEL PEAK 16(8P23.3) WILD-TYPE 39  0 21
D43V8, multiclass
    clus
vv   DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  M0                          34                            39
  M1                           4                             0
  MX                          26                            21
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 16(8P23.3) MUTATED   31  8 15  2  8
  DEL PEAK 16(8P23.3) WILD-TYPE 40  6  9  2  2
D43V9, multiclass
D43V10, continuous
D43V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 16(8P23.3) MUTATED         1       20        15       26
  DEL PEAK 16(8P23.3) WILD-TYPE       0       15        25       18
D43V12, multiclass
           clus
vv          DEL PEAK 16(8P23.3) MUTATED DEL PEAK 16(8P23.3) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           20                            15
  STAGE III                          15                            25
  STAGE IV                           26                            18

Clustering(44) Variable = Del Peak 17(8p21.1) mutation analysis
D44V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 17(8P21.1) MUTATED   51 15
  DEL PEAK 17(8P21.1) WILD-TYPE 36 16
  DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE 
                           66                            52 
  DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE 
                           15                            16 
$`DEL PEAK 17(8P21.1) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD 
       12.79         2.66        19.00         5.06         8.35         3.65 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3KJ 
        8.98         1.94         0.43         0.69        12.92         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AC 
        5.19         8.09         2.53         2.14         8.98       118.88 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
      100.47         1.81        10.59        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B4 TCGA-FD-A3B5 
        7.82         8.22         5.52         9.67         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM 
        6.87         4.01         8.94        32.02        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        6.81         5.49         4.54        46.78        19.79         1.94 
TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3RC 
       49.91         5.65        20.12         0.82         4.50         1.38 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        1.02         2.50         1.08         7.69         2.10         3.12 
TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        6.38         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.38         5.33         6.71         8.71         3.42         4.64 

$`DEL PEAK 17(8P21.1) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        11.93        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X 
       17.85        19.46         5.06        14.89         8.61         8.25 
TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CU-A0YO TCGA-CU-A0YR 
        5.88         4.64         2.01         0.46         4.90         7.20 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       31.40         7.04         8.91         7.17         5.85         6.64 
TCGA-DK-A2I2 TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
        7.76        10.49        37.84        11.51         8.28        10.55 
TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B8 TCGA-FD-A3N6 
      131.15        36.43         0.10         8.81        11.05         7.96 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        6.84         2.33        26.50        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GD-A3OS TCGA-GU-A42Q 
        7.04         2.86         2.24         1.32         5.82         7.56 
TCGA-GV-A3JV TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO 
        4.37         4.11         6.64         1.51 

  DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE 
                       118.88                        131.15 
  DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE 
                        6.265                         7.445 
[1] "0.4 - 118.9 (6.3)" "0.1 - 131.2 (7.4)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 17(8P21.1) WILD-TYPE" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 17(8P21.1) WILD-TYPE"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 17(8P21.1) MUTATED" "DEL PEAK 17(8P21.1) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 17(8P21.1) MUTATED"   "DEL PEAK 17(8P21.1) MUTATED" 
[1] "hr=" "1"  
D44V2, continuous
D44V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(8P21.1) MUTATED     15   54
  DEL PEAK 17(8P21.1) WILD-TYPE   18   38
        clus
vv       DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE
  FEMALE                          15                            18
  MALE                            54                            38
D44V4, continuous
D44V5, continuous
D44V6, continuous
D44V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 17(8P21.1) MUTATED   34  4 30
  DEL PEAK 17(8P21.1) WILD-TYPE 39  0 17
D44V8, multiclass
    clus
vv   DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE
  M0                          34                            39
  M1                           4                             0
  MX                          30                            17
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 17(8P21.1) MUTATED   33  9 15  3  8
  DEL PEAK 17(8P21.1) WILD-TYPE 38  5  9  1  2
D44V9, multiclass
D44V10, continuous
D44V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 17(8P21.1) MUTATED         1       21        15       29
  DEL PEAK 17(8P21.1) WILD-TYPE       0       14        25       15
D44V12, multiclass
           clus
vv          DEL PEAK 17(8P21.1) MUTATED DEL PEAK 17(8P21.1) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           21                            14
  STAGE III                          15                            25
  STAGE IV                           29                            15

Clustering(45) Variable = Del Peak 18(9p23) mutation analysis
D45V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 18(9P23) MUTATED   39 12
  DEL PEAK 18(9P23) WILD-TYPE 48 19
  DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE 
                         51                          67 
  DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE 
                         12                          19 
$`DEL PEAK 18(9P23) MUTATED`
TCGA-BL-A0C8 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20Q TCGA-BT-A20T 
       12.79        11.93        19.00        26.10        19.46        14.89 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C 
        8.35         8.25         5.88         1.94         0.46         0.69 
TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1AA TCGA-DK-A1AB 
        4.90         5.46         8.09         2.53         7.04         8.91 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IN TCGA-DK-A3IQ 
        5.85         6.64        10.59         2.20         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3WX TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3B5 
       37.84         5.52        10.55        36.43         8.32         8.94 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A2EJ 
        6.12         6.81        46.78        19.79         1.94        26.50 
TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A3OQ 
       32.78         7.04         0.82         1.02         1.08         3.12 
TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QK TCGA-H4-A2HQ 
        5.82         7.56         6.41         7.79         6.64         6.71 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

$`DEL PEAK 18(9P23) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20O TCGA-BT-A20P 
        7.33         2.66         6.74         6.58        12.16        17.85 
TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.61         5.06         3.65         4.64         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A5 
        2.01         0.43        12.92         7.20         5.19         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A2HX 
       31.40         8.98       118.88       100.47         7.17         1.81 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IU TCGA-DK-A3IV 
        7.76        75.32         3.98         7.82        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 
        8.28       131.15         0.10         8.81         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SO 
       11.05         8.94         7.96        32.02        10.98         5.49 
TCGA-FD-A3SP TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A2EL 
        4.54         6.84         2.33        49.91         5.65        26.93 
TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       17.26        20.12         2.86         2.24         1.32         4.50 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42P TCGA-GV-A3JV 
        1.38         2.50         7.69         2.10         6.38         4.37 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G 
        6.15         5.69         7.63         4.11         6.38         5.33 
TCGA-H4-A2HO 
        1.51 

  DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE 
                       0.46                        0.10 
  DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE 
                      46.78                      131.15 
  DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE 
                       7.04                        6.74 
[1] "0.5 - 46.8 (7.0)"  "0.1 - 131.2 (6.7)"
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BL-A0C8                  TCGA-BL-A13I 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BL-A13J                  TCGA-BL-A3JM 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A0S7                  TCGA-BT-A0YX 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20J                  TCGA-BT-A20N 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20O                  TCGA-BT-A20P 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20Q                  TCGA-BT-A20R 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20T                  TCGA-BT-A20U 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-BT-A20V                  TCGA-BT-A20W 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A20X                  TCGA-BT-A2LA 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-BT-A2LD                  TCGA-BT-A3PH 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-C4-A0EZ                  TCGA-C4-A0F0 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-C4-A0F6                  TCGA-CF-A1HR 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CF-A1HS                  TCGA-CF-A27C 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A0YN                  TCGA-CU-A0YO 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A0YR                  TCGA-CU-A3KJ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-CU-A3QU                  TCGA-CU-A3YL 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1A3                  TCGA-DK-A1A5 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1A6                  TCGA-DK-A1A7 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1AA                  TCGA-DK-A1AB 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1AC                  TCGA-DK-A1AD 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A1AE                  TCGA-DK-A1AF 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A1AG                  TCGA-DK-A2HX 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A2I1                  TCGA-DK-A2I2 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A2I6                  TCGA-DK-A3IK 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IL                  TCGA-DK-A3IM 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A3IN                  TCGA-DK-A3IQ 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IS                  TCGA-DK-A3IT 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3IU                  TCGA-DK-A3IV 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-DK-A3WW                  TCGA-DK-A3WX 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-DK-A3WY                  TCGA-E5-A2PC 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-E7-A3Y1                  TCGA-FD-A3B3 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3B4                  TCGA-FD-A3B5 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3B6                  TCGA-FD-A3B7 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3B8                  TCGA-FD-A3N5 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3N6                  TCGA-FD-A3NA 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3SL                  TCGA-FD-A3SM 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3SN                  TCGA-FD-A3SO 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-FD-A3SP                  TCGA-FD-A3SQ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A3SR                  TCGA-FD-A3SS 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-FD-A43U                  TCGA-FT-A3EE 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A2EF                  TCGA-G2-A2EJ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-G2-A2EK                  TCGA-G2-A2EL 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A2EO                  TCGA-G2-A2ES 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A3IB                  TCGA-G2-A3IE 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-G2-A3VY                  TCGA-GC-A3BM 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3I6                  TCGA-GC-A3OO 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3RB                  TCGA-GC-A3RC 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3RD                  TCGA-GC-A3WC 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GC-A3YS                  TCGA-GD-A2C5 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GD-A3OP                  TCGA-GD-A3OQ 
"DEL PEAK 18(9P23) WILD-TYPE"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-GD-A3OS                  TCGA-GU-A42P 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GU-A42Q                  TCGA-GV-A3JV 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3JW                  TCGA-GV-A3JX 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3JZ                  TCGA-GV-A3QF 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3QH                  TCGA-GV-A3QI 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A3QK                  TCGA-GV-A40E 
  "DEL PEAK 18(9P23) MUTATED" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-GV-A40G                  TCGA-H4-A2HO 
"DEL PEAK 18(9P23) WILD-TYPE" "DEL PEAK 18(9P23) WILD-TYPE" 
                 TCGA-H4-A2HQ                  TCGA-K4-A3WS 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
                 TCGA-K4-A3WU                  TCGA-K4-A3WV 
  "DEL PEAK 18(9P23) MUTATED"   "DEL PEAK 18(9P23) MUTATED" 
[1] "hr=" "1.3"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 18(9P23) MUTATED     13   44
  DEL PEAK 18(9P23) WILD-TYPE   20   48
        clus
vv       DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE
  FEMALE                        13                          20
  MALE                          44                          48
D45V4, continuous
D45V5, continuous
D45V6, continuous
D45V7, continuous
                             vv
clus                          M0 M1 MX
  DEL PEAK 18(9P23) MUTATED   34  2 20
  DEL PEAK 18(9P23) WILD-TYPE 39  2 27
D45V8, multiclass
    clus
vv   DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE
  M0                        34                          39
  M1                         2                           2
  MX                        20                          27
                             vv
clus                          N0 N1 N2 N3 NX
  DEL PEAK 18(9P23) MUTATED   31  5 11  1  7
  DEL PEAK 18(9P23) WILD-TYPE 40  9 13  3  3
D45V9, multiclass
D45V10, continuous
D45V11, continuous
                             vv
clus                          STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 18(9P23) MUTATED         1       16        17       19
  DEL PEAK 18(9P23) WILD-TYPE       0       19        23       25
D45V12, multiclass
           clus
vv          DEL PEAK 18(9P23) MUTATED DEL PEAK 18(9P23) WILD-TYPE
  STAGE I                           1                           0
  STAGE II                         16                          19
  STAGE III                        17                          23
  STAGE IV                         19                          25

Clustering(46) Variable = Del Peak 19(9p21.3) mutation analysis
D46V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 19(9P21.3) MUTATED   47 20
  DEL PEAK 19(9P21.3) WILD-TYPE 40 11
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                           67                            51 
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                           20                            11 
$`DEL PEAK 19(9P21.3) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       26.10        17.85        19.46        14.89         8.61         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
        8.35         8.25         1.94         2.01         0.46         0.69 
TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA 
        4.90         5.46         8.09         2.53         2.14         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A3IK 
        8.91         7.17         5.85         6.64        10.59         2.20 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3WW TCGA-DK-A3WX 
        8.22        10.49        37.84         5.52         8.28        10.55 
TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SN 
       36.43         8.94         7.96        32.02         6.12         6.81 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-G2-A2EF 
        4.54        46.78        19.79         1.94         6.84        49.91 
TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RD 
       32.78         7.04        20.12         0.82         2.86         1.02 
TCGA-GC-A3YS TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3QF 
        1.08         3.12         5.82         7.56         6.41         7.63 
TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        7.79         6.64         6.38         6.71         8.71         3.42 
TCGA-K4-A3WV 
        4.64 

$`DEL PEAK 19(9P21.3) WILD-TYPE`
TCGA-BL-A3JM TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        6.74        12.16         5.06         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A6 
        8.98         0.43        12.92         7.20         5.19        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 
        8.98       118.88       100.47         1.81         7.76        75.32 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WY TCGA-E7-A3Y1 
        3.98         7.82        11.51         9.67       131.15         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         6.87         4.01        11.05         8.94 
TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       10.98         5.49         2.33        26.50         5.65        26.93 
TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC 
       17.26         2.24         1.32         4.50         1.38         2.50 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.69         2.10         6.38         4.37         6.15         5.69 
TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HO 
        4.11         5.33         1.51 

  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                         0.46                          0.10 
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                        49.91                        131.15 
  DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE 
                         7.04                          6.38 
[1] "0.5 - 49.9 (7.0)"  "0.1 - 131.2 (6.4)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 19(9P21.3) WILD-TYPE"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 19(9P21.3) MUTATED" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 19(9P21.3) WILD-TYPE" "DEL PEAK 19(9P21.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
  "DEL PEAK 19(9P21.3) MUTATED"   "DEL PEAK 19(9P21.3) MUTATED" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(9P21.3) MUTATED     17   56
  DEL PEAK 19(9P21.3) WILD-TYPE   16   36
        clus
vv       DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  FEMALE                          17                            16
  MALE                            56                            36
D46V4, continuous
D46V5, continuous
D46V6, continuous
D46V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 19(9P21.3) MUTATED   43  2 27
  DEL PEAK 19(9P21.3) WILD-TYPE 30  2 20
D46V8, multiclass
    clus
vv   DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  M0                          43                            30
  M1                           2                             2
  MX                          27                            20
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 19(9P21.3) MUTATED   41  5 15  1  9
  DEL PEAK 19(9P21.3) WILD-TYPE 30  9  9  3  1
D46V9, multiclass
D46V10, continuous
D46V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 19(9P21.3) MUTATED         1       22        23       23
  DEL PEAK 19(9P21.3) WILD-TYPE       0       13        17       21
D46V12, multiclass
           clus
vv          DEL PEAK 19(9P21.3) MUTATED DEL PEAK 19(9P21.3) WILD-TYPE
  STAGE I                             1                             0
  STAGE II                           22                            13
  STAGE III                          23                            17
  STAGE IV                           23                            21

Clustering(47) Variable = Del Peak 20(10p12.1) mutation analysis
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(10P12.1) MUTATED   18  6
  DEL PEAK 20(10P12.1) WILD-TYPE 69 25
  DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE 
                            24                             94 
  DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE 
                             6                             25 
$`DEL PEAK 20(10P12.1) MUTATED`
TCGA-BT-A20U TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CF-A27C TCGA-CU-A0YR TCGA-CU-A3KJ 
        8.61         5.88         1.94         0.69         7.20         5.46 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B4 
        1.81         7.76         2.20        37.84        36.43         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A2EL 
        8.94         4.01         8.94        19.79         1.94        26.93 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GV-A40G TCGA-H4-A2HQ 
        7.04         2.86         1.38         2.50         5.33         6.71 

$`DEL PEAK 20(10P12.1) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH 
       14.89         5.06         8.35         8.25         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO 
        8.98         2.01         0.46         0.43        12.92         4.90 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.19         8.09         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        6.64        10.59        75.32         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       10.49         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 
      131.15         0.10         8.81         6.87        11.05         7.96 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       32.02        10.98         6.12         6.81         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
       46.78         6.84         2.33        49.91        26.50         5.65 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78        17.26        20.12         0.82         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        4.50         1.02         1.08         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        5.82         6.38         7.56         4.37         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.11         6.64         6.38 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         8.71         3.42         4.64 

  DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE 
                          0.69                           0.10 
  DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE 
                         37.84                         131.15 
  DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE 
                         6.295                          6.955 
[1] "0.7 - 37.8 (6.3)"  "0.1 - 131.2 (7.0)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 20(10P12.1) MUTATED"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 20(10P12.1) WILD-TYPE"   "DEL PEAK 20(10P12.1) MUTATED" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 20(10P12.1) MUTATED" "DEL PEAK 20(10P12.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 20(10P12.1) WILD-TYPE" "DEL PEAK 20(10P12.1) WILD-TYPE" 
[1] "hr=" "1.1"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(10P12.1) MUTATED      7   17
  DEL PEAK 20(10P12.1) WILD-TYPE   26   75
        clus
vv       DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE
  FEMALE                            7                             26
  MALE                             17                             75
D47V4, continuous
D47V5, continuous
D47V6, continuous
D47V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 20(10P12.1) MUTATED   13  1 10
  DEL PEAK 20(10P12.1) WILD-TYPE 60  3 37
D47V8, multiclass
    clus
vv   DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE
  M0                           13                             60
  M1                            1                              3
  MX                           10                             37
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 20(10P12.1) MUTATED   14  2  4  2  2
  DEL PEAK 20(10P12.1) WILD-TYPE 57 12 20  2  8
D47V9, multiclass
D47V10, continuous
D47V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 20(10P12.1) MUTATED         0        8         6        9
  DEL PEAK 20(10P12.1) WILD-TYPE       1       27        34       35
D47V12, multiclass
           clus
vv          DEL PEAK 20(10P12.1) MUTATED DEL PEAK 20(10P12.1) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                             8                             27
  STAGE III                            6                             34
  STAGE IV                             9                             35

Clustering(48) Variable = Del Peak 21(10q23.31) mutation analysis
D48V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 21(10Q23.31) MUTATED   39 13
  DEL PEAK 21(10Q23.31) WILD-TYPE 48 18
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                             52                              66 
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                             13                              18 
$`DEL PEAK 21(10Q23.31) MUTATED`
TCGA-BL-A0C8 TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       12.79        26.10         5.06         8.61         5.06         8.35 
TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3KJ 
        3.65         1.94         2.01         0.69         4.90         5.46 
TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I2 
        5.19         2.14         8.98       100.47         1.81         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82         8.22        37.84 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SR TCGA-FD-A3SS 
        9.67        36.43         6.87         8.94        19.79         1.94 
TCGA-FD-A43U TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        6.84         5.65        26.93         7.04        20.12         0.82 
TCGA-GC-A3BM TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GU-A42P 
        2.86         1.38         1.02         2.50         2.10         6.38 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.41         6.15         5.69         7.63         7.79         4.11 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        5.33         6.71         8.71         3.42 

$`DEL PEAK 21(10Q23.31) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
        7.33         2.66         6.74         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20X TCGA-BT-A2LA 
       12.16        17.85        19.46        14.89         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR 
        4.64         8.98         0.46         0.43        12.92         7.20 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        8.09         2.53        31.40         7.04         8.91       118.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A3IQ TCGA-DK-A3IT 
        7.17         5.85         6.64        10.59        10.49         5.52 
TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 
       11.51         8.28        10.55       131.15         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.32         8.94         4.01        11.05         7.96        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       10.98         6.12         6.81         5.49         4.54        46.78 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3I6 
        2.33        49.91        26.50        32.78        17.26         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS 
        1.32         4.50         1.08         7.69         3.12         5.82 
TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WV 
        7.56         4.37         6.64         6.38         1.51         4.64 

  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                           0.69                            0.10 
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                         100.47                          131.15 
  DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE 
                          6.265                           7.445 
[1] "0.7 - 100.5 (6.3)" "0.1 - 131.2 (7.4)"
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 21(10Q23.31) WILD-TYPE"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 21(10Q23.31) WILD-TYPE" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 21(10Q23.31) MUTATED"   "DEL PEAK 21(10Q23.31) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 21(10Q23.31) MUTATED" "DEL PEAK 21(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 21(10Q23.31) MUTATED     14   39
  DEL PEAK 21(10Q23.31) WILD-TYPE   19   53
        clus
vv       DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  FEMALE                            14                              19
  MALE                              39                              53
D48V4, continuous
D48V5, continuous
D48V6, continuous
D48V7, continuous
                                 vv
clus                              M0 M1 MX
  DEL PEAK 21(10Q23.31) MUTATED   30  1 21
  DEL PEAK 21(10Q23.31) WILD-TYPE 43  3 26
D48V8, multiclass
    clus
vv   DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  M0                            30                              43
  M1                             1                               3
  MX                            21                              26
                                 vv
clus                              N0 N1 N2 N3 NX
  DEL PEAK 21(10Q23.31) MUTATED   24  6 11  3  8
  DEL PEAK 21(10Q23.31) WILD-TYPE 47  8 13  1  2
D48V9, multiclass
D48V10, continuous
D48V11, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 21(10Q23.31) MUTATED         1       18        11       21
  DEL PEAK 21(10Q23.31) WILD-TYPE       0       17        29       23
D48V12, multiclass
           clus
vv          DEL PEAK 21(10Q23.31) MUTATED DEL PEAK 21(10Q23.31) WILD-TYPE
  STAGE I                               1                               0
  STAGE II                             18                              17
  STAGE III                            11                              29
  STAGE IV                             21                              23

Clustering(49) Variable = Del Peak 22(11p15.5) mutation analysis
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(11P15.5) MUTATED   41 15
  DEL PEAK 22(11P15.5) WILD-TYPE 46 16
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                            56                             62 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                            15                             16 
$`DEL PEAK 22(11P15.5) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20T 
       12.79         2.66        19.00        26.10         5.06        14.89 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        5.06         8.35         4.64         8.98         1.94         2.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 
        0.46         0.43         0.69         7.20         5.46         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A2HX TCGA-DK-A2I1 
        8.98         8.91       100.47         5.85         1.81        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       75.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3SL TCGA-FD-A3SN 
       37.84         5.52         8.94         4.01        10.98         6.81 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A2EO TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       19.79         1.94        32.78        20.12         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42Q 
        2.24         1.02         1.08         7.69         2.10         7.56 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ 
        4.37         6.41         7.63         6.38         5.33         6.71 
TCGA-K4-A3WS TCGA-K4-A3WV 
        8.71         4.64 

$`DEL PEAK 22(11P15.5) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
        7.33         6.74         6.58        11.93        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-CU-A0YN 
       19.46         8.61         8.25         5.88         3.65        12.92 
TCGA-CU-A0YO TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1AA 
        4.90         5.19         8.09         2.53        31.40         7.04 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IU TCGA-DK-A3IV 
      118.88         7.17         6.64         7.76        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 
        8.28        10.55       131.15        36.43         0.10         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.32         6.87        11.05         8.94         7.96        32.02 
TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43U TCGA-FT-A3EE 
        6.12         5.49         4.54        46.78         6.84         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB 
       49.91        26.50         5.65        26.93        17.26         7.04 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS 
        1.32         4.50         1.38         2.50         3.12         5.82 
TCGA-GU-A42P TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.38         6.15         5.69         7.79         4.11         6.64 
TCGA-H4-A2HO TCGA-K4-A3WU 
        1.51         3.42 

  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                          0.43                           0.10 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                        100.47                         131.15 
  DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE 
                         6.395                          7.105 
[1] "0.4 - 100.5 (6.4)" "0.1 - 131.2 (7.1)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 22(11P15.5) WILD-TYPE" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 22(11P15.5) MUTATED" "DEL PEAK 22(11P15.5) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 22(11P15.5) MUTATED"   "DEL PEAK 22(11P15.5) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 22(11P15.5) WILD-TYPE"   "DEL PEAK 22(11P15.5) MUTATED" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(11P15.5) MUTATED     16   46
  DEL PEAK 22(11P15.5) WILD-TYPE   17   46
        clus
vv       DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  FEMALE                           16                             17
  MALE                             46                             46
D49V4, continuous
D49V5, continuous
D49V6, continuous
D49V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 22(11P15.5) MUTATED   38  3 20
  DEL PEAK 22(11P15.5) WILD-TYPE 35  1 27
D49V8, multiclass
    clus
vv   DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  M0                           38                             35
  M1                            3                              1
  MX                           20                             27
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 22(11P15.5) MUTATED   30  7 16  1  6
  DEL PEAK 22(11P15.5) WILD-TYPE 41  7  8  3  4
D49V9, multiclass
D49V10, continuous
D49V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 22(11P15.5) MUTATED         1       17        14       26
  DEL PEAK 22(11P15.5) WILD-TYPE       0       18        26       18
D49V12, multiclass
           clus
vv          DEL PEAK 22(11P15.5) MUTATED DEL PEAK 22(11P15.5) WILD-TYPE
  STAGE I                              1                              0
  STAGE II                            17                             18
  STAGE III                           14                             26
  STAGE IV                            26                             18

Clustering(50) Variable = Del Peak 23(11q25) mutation analysis
D50V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 23(11Q25) MUTATED   27  9
  DEL PEAK 23(11Q25) WILD-TYPE 60 22
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                          36                           82 
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                           9                           22 
$`DEL PEAK 23(11Q25) MUTATED`
TCGA-BL-A0C8 TCGA-BT-A20J TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ 
       12.79        19.00         8.35         5.88         4.64         8.98 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 
        0.43         0.69        12.92         5.46         2.14        31.40 
TCGA-DK-A1AB TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-E5-A2PC 
        8.91         7.82         8.22        10.49        37.84        36.43 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM 
        8.94         4.01        17.26         7.04         0.82         2.86 
TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42Q TCGA-GV-A3JV 
        1.02         1.08         7.69         2.10         7.56         4.37 
TCGA-GV-A3JW TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        6.41         6.64         6.38         5.33         6.71         4.64 

$`DEL PEAK 23(11Q25) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N 
        7.33         2.66         6.74         6.58        11.93        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        5.06         8.25         3.65         1.94         2.01         0.46 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A7 
        4.90         7.20         5.19         8.09         2.53         8.98 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59         7.76        75.32         2.20         3.98 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        5.52        11.51         9.67         8.28        10.55       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 
        0.10         8.81         8.32         6.87        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
        7.96        32.02        10.98         6.12         6.81         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FT-A3EE 
        4.54        46.78        19.79         1.94         6.84         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IE 
       49.91        26.50         5.65        26.93        32.78        20.12 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A3OQ 
        2.24         1.32         4.50         1.38         2.50         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        5.82         6.38         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        4.11         1.51         8.71         3.42 

  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                        0.43                         0.10 
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                       37.84                       131.15 
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                       6.675                        6.955 
[1] "0.4 - 37.8 (6.7)"  "0.1 - 131.2 (7.0)"
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 23(11Q25) WILD-TYPE" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "DEL PEAK 23(11Q25) MUTATED"   "DEL PEAK 23(11Q25) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 23(11Q25) MUTATED" "DEL PEAK 23(11Q25) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 23(11Q25) WILD-TYPE"   "DEL PEAK 23(11Q25) MUTATED" 
[1] "hr=" "1.2"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 23(11Q25) MUTATED     10   29
  DEL PEAK 23(11Q25) WILD-TYPE   23   63
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  FEMALE                         10                           23
  MALE                           29                           63
D50V4, continuous
D50V5, continuous
D50V6, continuous
D50V7, continuous
                              vv
clus                           M0 M1 MX
  DEL PEAK 23(11Q25) MUTATED   21  2 15
  DEL PEAK 23(11Q25) WILD-TYPE 52  2 32
D50V8, multiclass
    clus
vv   DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  M0                         21                           52
  M1                          2                            2
  MX                         15                           32
                              vv
clus                           N0 N1 N2 N3 NX
  DEL PEAK 23(11Q25) MUTATED   21  6  5  0  5
  DEL PEAK 23(11Q25) WILD-TYPE 50  8 19  4  5
D50V9, multiclass
D50V10, continuous
D50V11, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 23(11Q25) MUTATED         1       13        10       12
  DEL PEAK 23(11Q25) WILD-TYPE       0       22        30       32
D50V12, multiclass
           clus
vv          DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  STAGE I                            1                            0
  STAGE II                          13                           22
  STAGE III                         10                           30
  STAGE IV                          12                           32

Clustering(51) Variable = Del Peak 24(13q14.2) mutation analysis
D51V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(13Q14.2) MUTATED   30 16
  DEL PEAK 24(13Q14.2) WILD-TYPE 57 15
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            46                             72 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            16                             15 
$`DEL PEAK 24(13Q14.2) MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20V 
        2.66         6.74        26.10         5.06        14.89         5.06 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS 
        8.25         5.88         4.64         8.98         1.94         0.43 
TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        5.19         2.53         8.98       118.88       100.47         7.17 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN 
        1.81         7.76        75.32         2.20         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 
       10.49         9.67        36.43         8.81         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        4.01         8.94         6.81        46.78        19.79         1.94 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS 
       32.78        17.26         2.86         1.32         4.50         1.08 
TCGA-GD-A3OP TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QI 
        2.10         6.41         6.15         4.11 

$`DEL PEAK 24(13Q14.2) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
       12.79         7.33         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LD TCGA-C4-A0F6 
       17.85        19.46         8.61         8.35         3.65         2.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.46         0.69        12.92         4.90         7.20         5.46 
TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AF 
        8.09         2.14        31.40         7.04         8.91         5.85 
TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        6.64        10.59         3.98        37.84         5.52        11.51 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B8 
        8.28        10.55       131.15         0.10         8.32        11.05 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
        7.96        32.02        10.98         6.12         5.49         4.54 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        6.84         2.33        49.91        26.50         5.65        26.93 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD 
        7.04        20.12         0.82         2.24         1.38         1.02 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        2.50         7.69         3.12         5.82         6.38         7.56 
TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        4.37         5.69         7.63         7.79         6.64         6.38 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.33         1.51         6.71         8.71         3.42         4.64 

  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                          0.43                           0.10 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                        118.88                         131.15 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                          6.84                           6.94 
[1] "0.4 - 118.9 (6.8)" "0.1 - 131.2 (6.9)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
[1] "hr=" "1.5"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(13Q14.2) MUTATED     10   38
  DEL PEAK 24(13Q14.2) WILD-TYPE   23   54
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  FEMALE                           10                             23
  MALE                             38                             54
D51V4, continuous
D51V5, continuous
D51V6, continuous
D51V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 24(13Q14.2) MUTATED   29  1 18
  DEL PEAK 24(13Q14.2) WILD-TYPE 44  3 29
D51V8, multiclass
    clus
vv   DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  M0                           29                             44
  M1                            1                              3
  MX                           18                             29
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 24(13Q14.2) MUTATED   22  8 13  2  3
  DEL PEAK 24(13Q14.2) WILD-TYPE 49  6 11  2  7
D51V9, multiclass
D51V10, continuous
D51V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 24(13Q14.2) MUTATED         0        9        14       23
  DEL PEAK 24(13Q14.2) WILD-TYPE       1       26        26       21
D51V12, multiclass
           clus
vv          DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                             9                             26
  STAGE III                           14                             26
  STAGE IV                            23                             21

Clustering(52) Variable = Del Peak 25(14q12) mutation analysis
D52V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 25(14Q12) MUTATED   24  9
  DEL PEAK 25(14Q12) WILD-TYPE 63 22
  DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE 
                          33                           85 
  DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE 
                           9                           22 
$`DEL PEAK 25(14Q12) MUTATED`
TCGA-BT-A20J TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A2LD TCGA-CF-A1HR TCGA-CU-A0YO 
       19.00        14.89         5.06         3.65         0.46         4.90 
TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2I1 
        5.19         2.53         2.14       118.88       100.47        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-FD-A3B5 TCGA-FD-A3SP 
       75.32         2.20        10.49        37.84         8.94         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A3IE TCGA-G2-A3VY 
       46.78        19.79         6.84        49.91        20.12         0.82 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GU-A42Q TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QK 
        4.50         1.02         7.56         5.69         7.63         6.64 
TCGA-GV-A40E TCGA-H4-A2HQ TCGA-K4-A3WU 
        6.38         6.71         3.42 

$`DEL PEAK 25(14Q12) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       26.10        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.35         8.25         5.88         4.64         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3KJ 
        2.01         0.43         0.69        12.92         7.20         5.46 
TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE 
        8.09        31.40         8.98         7.04         8.91         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IM 
        5.85         6.64         1.81         7.76         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
        8.22         5.52        11.51         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
      131.15        36.43         0.10         8.81         8.32         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        4.01        11.05         8.94         7.96        32.02        10.98 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EJ 
        6.12         6.81         5.49         1.94         2.33        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM 
        5.65        26.93        32.78        17.26         7.04         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        2.24         1.32         1.38         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW 
        2.10         3.12         5.82         6.38         4.37         6.41 
TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS 
        6.15         7.79         4.11         5.33         1.51         8.71 
TCGA-K4-A3WV 
        4.64 

  DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE 
                        0.46                         0.10 
  DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE 
                      118.88                       131.15 
  DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE 
                        6.71                         7.04 
[1] "0.5 - 118.9 (6.7)" "0.1 - 131.2 (7.0)"
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 25(14Q12) WILD-TYPE"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
  "DEL PEAK 25(14Q12) MUTATED"   "DEL PEAK 25(14Q12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
"DEL PEAK 25(14Q12) WILD-TYPE" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
  "DEL PEAK 25(14Q12) MUTATED" "DEL PEAK 25(14Q12) WILD-TYPE" 
[1] "hr=" "1.5"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 25(14Q12) MUTATED      6   29
  DEL PEAK 25(14Q12) WILD-TYPE   27   63
        clus
vv       DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE
  FEMALE                          6                           27
  MALE                           29                           63
D52V4, continuous
D52V5, continuous
D52V6, continuous
D52V7, continuous
                              vv
clus                           M0 M1 MX
  DEL PEAK 25(14Q12) MUTATED   20  1 13
  DEL PEAK 25(14Q12) WILD-TYPE 53  3 34
D52V8, multiclass
    clus
vv   DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE
  M0                         20                           53
  M1                          1                            3
  MX                         13                           34
                              vv
clus                           N0 N1 N2 N3 NX
  DEL PEAK 25(14Q12) MUTATED   14  5 11  1  3
  DEL PEAK 25(14Q12) WILD-TYPE 57  9 13  3  7
D52V9, multiclass
D52V10, continuous
D52V11, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 25(14Q12) MUTATED         0        9         6       17
  DEL PEAK 25(14Q12) WILD-TYPE       1       26        34       27
D52V12, multiclass
           clus
vv          DEL PEAK 25(14Q12) MUTATED DEL PEAK 25(14Q12) WILD-TYPE
  STAGE I                            0                            1
  STAGE II                           9                           26
  STAGE III                          6                           34
  STAGE IV                          17                           27

Clustering(53) Variable = Del Peak 26(14q32.31) mutation analysis
D53V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 26(14Q32.31) MUTATED   26  7
  DEL PEAK 26(14Q32.31) WILD-TYPE 61 24
  DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE 
                             33                              85 
  DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE 
                              7                              24 
$`DEL PEAK 26(14Q32.31) MUTATED`
TCGA-BT-A20J TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD TCGA-CF-A1HR 
       19.00        14.89         5.06         8.35         3.65         0.46 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2I1 
        4.90         7.20         2.53         2.14       118.88        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-FD-A3B6 TCGA-FD-A3SN TCGA-FD-A3SP 
       75.32         2.20        10.49         6.87         6.81         4.54 
TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A3IE TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3YS 
        6.84        49.91        20.12         4.50         1.02         1.08 
TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A40E 
        7.56         6.15         5.69         7.63         4.11         6.38 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU 
        5.33         6.71         3.42 

$`DEL PEAK 26(14Q32.31) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       26.10        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        8.25         5.88         4.64         8.98         1.94         2.01 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
        0.43         0.69        12.92         5.46         5.19         8.09 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IM 
        5.85         6.64         1.81         7.76         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
        8.22        37.84         5.52        11.51         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 
       10.55       131.15        36.43         0.10         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.94         4.01        11.05         8.94         7.96        32.02 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       10.98         6.12         5.49        46.78        19.79         1.94 
TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        2.33        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC 
        7.04         0.82         2.86         2.24         1.32         1.38 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
        2.50         7.69         2.10         3.12         5.82         6.38 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS 
        4.37         6.41         7.79         6.64         1.51         8.71 
TCGA-K4-A3WV 
        4.64 

  DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE 
                           0.46                            0.10 
  DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE 
                         118.88                          131.15 
  DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE 
                           6.38                            7.33 
[1] "0.5 - 118.9 (6.4)" "0.1 - 131.2 (7.3)"
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 26(14Q32.31) WILD-TYPE" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
  "DEL PEAK 26(14Q32.31) MUTATED"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 26(14Q32.31) WILD-TYPE"   "DEL PEAK 26(14Q32.31) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 26(14Q32.31) MUTATED" "DEL PEAK 26(14Q32.31) WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(14Q32.31) MUTATED      5   30
  DEL PEAK 26(14Q32.31) WILD-TYPE   28   62
        clus
vv       DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE
  FEMALE                             5                              28
  MALE                              30                              62
D53V4, continuous
D53V5, continuous
D53V6, continuous
D53V7, continuous
                                 vv
clus                              M0 M1 MX
  DEL PEAK 26(14Q32.31) MUTATED   18  1 16
  DEL PEAK 26(14Q32.31) WILD-TYPE 55  3 31
D53V8, multiclass
    clus
vv   DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE
  M0                            18                              55
  M1                             1                               3
  MX                            16                              31
                                 vv
clus                              N0 N1 N2 N3 NX
  DEL PEAK 26(14Q32.31) MUTATED   19  4  8  1  3
  DEL PEAK 26(14Q32.31) WILD-TYPE 52 10 16  3  7
D53V9, multiclass
D53V10, continuous
D53V11, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 26(14Q32.31) MUTATED         0       10         8       14
  DEL PEAK 26(14Q32.31) WILD-TYPE       1       25        32       30
D53V12, multiclass
           clus
vv          DEL PEAK 26(14Q32.31) MUTATED DEL PEAK 26(14Q32.31) WILD-TYPE
  STAGE I                               0                               1
  STAGE II                             10                              25
  STAGE III                             8                              32
  STAGE IV                             14                              30

Clustering(54) Variable = Del Peak 27(15q13.1) mutation analysis
D54V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(15Q13.1) MUTATED   32 10
  DEL PEAK 27(15Q13.1) WILD-TYPE 55 21
  DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE 
                            42                             76 
  DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE 
                            10                             21 
$`DEL PEAK 27(15Q13.1) MUTATED`
TCGA-BL-A0C8 TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20W TCGA-BT-A20X 
       12.79         6.58        19.00        26.10         8.35         8.25 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A6 
        3.65         8.98         1.94         7.20         5.19        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IN 
        8.98       100.47         1.81         7.76         7.82         8.22 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SN TCGA-FD-A3SP 
       36.43         8.81         8.94        32.02         6.81         4.54 
TCGA-G2-A2EF TCGA-G2-A2EL TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RB 
       49.91        26.93        20.12         0.82         1.32         4.50 
TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX 
        1.02         1.08         2.10         6.38         6.41         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS 
        7.63         7.79         6.38         5.33         6.71         8.71 

$`DEL PEAK 27(15Q13.1) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
        7.33         2.66         6.74        11.93        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A2LA 
       19.46         5.06        14.89         8.61         5.06         5.88 
TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        4.64         2.01         0.46         0.43         0.69        12.92 
TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA 
        4.90         5.46         8.09         2.53         2.14         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
        8.91       118.88         7.17         5.85         6.64        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
       75.32         2.20         3.98        10.49        37.84         5.52 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 
       11.51         9.67         8.28        10.55       131.15         0.10 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
        8.32         8.94         6.87         4.01        11.05         7.96 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       10.98         6.12         5.49        46.78        19.79         1.94 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES 
        6.84         2.33        26.50         5.65        32.78        17.26 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A2C5 
        7.04         2.86         2.24         1.38         2.50         7.69 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QI 
        3.12         5.82         7.56         4.37         5.69         4.11 
TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A3WV 
        6.64         1.51         3.42         4.64 

  DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE 
                          0.82                           0.10 
  DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE 
                        100.47                         131.15 
  DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE 
                         7.695                          6.690 
[1] "0.8 - 100.5 (7.7)" "0.1 - 131.2 (6.7)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 27(15Q13.1) WILD-TYPE"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 27(15Q13.1) MUTATED" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 27(15Q13.1) MUTATED"   "DEL PEAK 27(15Q13.1) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 27(15Q13.1) WILD-TYPE" "DEL PEAK 27(15Q13.1) WILD-TYPE" 
[1] "hr=" "1.4"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(15Q13.1) MUTATED     10   34
  DEL PEAK 27(15Q13.1) WILD-TYPE   23   58
        clus
vv       DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE
  FEMALE                           10                             23
  MALE                             34                             58
D54V4, continuous
D54V5, continuous
D54V6, continuous
D54V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 27(15Q13.1) MUTATED   20  2 21
  DEL PEAK 27(15Q13.1) WILD-TYPE 53  2 26
D54V8, multiclass
    clus
vv   DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE
  M0                           20                             53
  M1                            2                              2
  MX                           21                             26
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 27(15Q13.1) MUTATED   20  7  8  2  6
  DEL PEAK 27(15Q13.1) WILD-TYPE 51  7 16  2  4
D54V9, multiclass
D54V10, continuous
D54V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 27(15Q13.1) MUTATED         1       14        10       18
  DEL PEAK 27(15Q13.1) WILD-TYPE       0       21        30       26
D54V12, multiclass
           clus
vv          DEL PEAK 27(15Q13.1) MUTATED DEL PEAK 27(15Q13.1) WILD-TYPE
  STAGE I                              1                              0
  STAGE II                            14                             21
  STAGE III                           10                             30
  STAGE IV                            18                             26

Clustering(55) Variable = Del Peak 28(16p13.3) mutation analysis
D55V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(16P13.3) MUTATED   30 13
  DEL PEAK 28(16P13.3) WILD-TYPE 57 18
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            43                             75 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                            13                             18 
$`DEL PEAK 28(16P13.3) MUTATED`
TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20W TCGA-BT-A2LA 
        2.66         6.58        26.10         5.06         8.35         5.88 
TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU 
        4.64         2.01         0.43        12.92         5.46         5.19 
TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
        2.53         8.98         1.81        75.32         2.20         7.82 
TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WX TCGA-FD-A3B3 TCGA-FD-A3B6 
        8.22         5.52         9.67        10.55         8.81         6.87 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A2EL TCGA-G2-A3IE 
        4.54        19.79         6.84        49.91        26.93        20.12 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.50         1.38         1.02         1.08         7.69         2.10 
TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-H4-A2HQ 
        6.38         6.41         6.15         5.69         7.79         6.71 
TCGA-K4-A3WS 
        8.71 

$`DEL PEAK 28(16P13.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
       12.79         7.33         6.74        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X 
       17.85        19.46        14.89         8.61         5.06         8.25 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO 
        3.65         8.98         1.94         0.46         0.69         4.90 
TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB 
        7.20         8.09         2.14        31.40         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      118.88       100.47         7.17         5.85         6.64        10.59 
TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WW 
        7.76         3.98        10.49        37.84        11.51         8.28 
TCGA-DK-A3WY TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 
      131.15        36.43         0.10         8.32         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM 
       11.05         8.94         7.96        32.02        10.98         6.12 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EJ 
        6.81         5.49        46.78         1.94         2.33        26.50 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM 
        5.65        32.78        17.26         7.04         0.82         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q 
        2.24         1.32         2.50         3.12         5.82         7.56 
TCGA-GV-A3JV TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        4.37         7.63         4.11         6.64         6.38         5.33 
TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         3.42         4.64 

  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                          0.43                           0.10 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                         75.32                         131.15 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                          6.41                           7.20 
[1] "0.4 - 75.3 (6.4)"  "0.1 - 131.2 (7.2)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 28(16P13.3) WILD-TYPE"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 28(16P13.3) MUTATED" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 28(16P13.3) MUTATED"   "DEL PEAK 28(16P13.3) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 28(16P13.3) WILD-TYPE" "DEL PEAK 28(16P13.3) WILD-TYPE" 
[1] "hr=" "1.5"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(16P13.3) MUTATED     11   33
  DEL PEAK 28(16P13.3) WILD-TYPE   22   59
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  FEMALE                           11                             22
  MALE                             33                             59
D55V4, continuous
D55V5, continuous
D55V6, continuous
D55V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 28(16P13.3) MUTATED   25  1 18
  DEL PEAK 28(16P13.3) WILD-TYPE 48  3 29
D55V8, multiclass
    clus
vv   DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  M0                           25                             48
  M1                            1                              3
  MX                           18                             29
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 28(16P13.3) MUTATED   22  5 11  1  5
  DEL PEAK 28(16P13.3) WILD-TYPE 49  9 13  3  5
D55V9, multiclass
D55V10, continuous
D55V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 28(16P13.3) MUTATED         0        9        16       17
  DEL PEAK 28(16P13.3) WILD-TYPE       1       26        24       27
D55V12, multiclass
           clus
vv          DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                             9                             26
  STAGE III                           16                             24
  STAGE IV                            17                             27

Clustering(56) Variable = Del Peak 29(16q23.1) mutation analysis
D56V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(16Q23.1) MUTATED   26  7
  DEL PEAK 29(16Q23.1) WILD-TYPE 61 24
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                            33                             85 
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                             7                             24 
$`DEL PEAK 29(16Q23.1) MUTATED`
TCGA-BL-A0C8 TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1AC TCGA-DK-A2HX 
       12.79        12.92         5.19         2.53       118.88         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IN TCGA-DK-A3IV TCGA-DK-A3WW 
       10.59         7.76        75.32         8.22         9.67         8.28 
TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FD-A3SO TCGA-FD-A3SS TCGA-FD-A43U TCGA-G2-A2EF 
        8.94         8.94         5.49         1.94         6.84        49.91 
TCGA-G2-A2EJ TCGA-G2-A3IE TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GU-A42P 
       26.50        20.12         1.38         1.02         2.10         6.38 
TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        7.56         4.37         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-H4-A2HQ TCGA-K4-A3WV 
        4.11         6.71         4.64 

$`DEL PEAK 29(16Q23.1) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
        7.33         2.66         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A5 
        0.69         4.90         7.20         5.46         8.09         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
        5.85         6.64         2.20         3.98         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E5-A2PC 
       37.84         5.52        11.51        10.55       131.15        36.43 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.32         6.87         4.01        11.05 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP 
        7.96        32.02        10.98         6.12         6.81         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
       46.78        19.79         2.33         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04         0.82         2.86         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS 
        4.50         2.50         1.08         7.69         3.12         5.82 
TCGA-GV-A3JW TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS 
        6.41         6.64         6.38         5.33         1.51         8.71 
TCGA-K4-A3WU 
        3.42 

  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                          1.02                           0.10 
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                        118.88                         131.15 
  DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE 
                          7.56                           6.81 
[1] "1.0 - 118.9 (7.6)" "0.1 - 131.2 (6.8)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 29(16Q23.1) MUTATED"   "DEL PEAK 29(16Q23.1) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
"DEL PEAK 29(16Q23.1) WILD-TYPE" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 29(16Q23.1) MUTATED" "DEL PEAK 29(16Q23.1) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 29(16Q23.1) WILD-TYPE"   "DEL PEAK 29(16Q23.1) MUTATED" 
[1] "hr=" "1.4"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(16Q23.1) MUTATED      8   26
  DEL PEAK 29(16Q23.1) WILD-TYPE   25   66
        clus
vv       DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  FEMALE                            8                             25
  MALE                             26                             66
D56V4, continuous
D56V5, continuous
D56V6, continuous
D56V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 29(16Q23.1) MUTATED   18  1 15
  DEL PEAK 29(16Q23.1) WILD-TYPE 55  3 32
D56V8, multiclass
    clus
vv   DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  M0                           18                             55
  M1                            1                              3
  MX                           15                             32
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 29(16Q23.1) MUTATED   14  6  6  3  5
  DEL PEAK 29(16Q23.1) WILD-TYPE 57  8 18  1  5
D56V9, multiclass
D56V10, continuous
D56V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 29(16Q23.1) MUTATED         1        9         8       15
  DEL PEAK 29(16Q23.1) WILD-TYPE       0       26        32       29
D56V12, multiclass
           clus
vv          DEL PEAK 29(16Q23.1) MUTATED DEL PEAK 29(16Q23.1) WILD-TYPE
  STAGE I                              1                              0
  STAGE II                             9                             26
  STAGE III                            8                             32
  STAGE IV                            15                             29

Clustering(57) Variable = Del Peak 30(17p12) mutation analysis
D57V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 30(17P12) MUTATED   44 17
  DEL PEAK 30(17P12) WILD-TYPE 43 14
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                          61                           57 
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                          17                           14 
$`DEL PEAK 30(17P12) MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q 
       12.79         2.66        19.00        26.10        17.85        19.46 
TCGA-BT-A20T TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
       14.89         8.25         5.88         4.64         8.98         1.94 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 
        0.46         0.43         0.69         5.46         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 
        8.98         8.91       118.88       100.47         1.81        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         8.22        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3NA 
        5.52         9.67        36.43         8.32         8.94        32.02 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43U TCGA-G2-A2EF 
        6.81         5.49        46.78         1.94         6.84        49.91 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       26.50        26.93        32.78        20.12         0.82         2.86 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42P 
        4.50         1.02         1.08         7.69         2.10         6.38 
TCGA-GU-A42Q TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E TCGA-GV-A40G 
        7.56         5.69         7.63         7.79         6.38         5.33 
TCGA-H4-A2HQ 
        6.71 

$`DEL PEAK 30(17P12) WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20R 
        7.33         6.74         6.58        11.93        12.16         5.06 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD TCGA-C4-A0F6 TCGA-CU-A0YN 
        8.61         5.06         8.35         3.65         2.01        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1AA 
        4.90         7.20         5.19         8.09         2.53         7.04 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IU 
        7.17         5.85         6.64         7.76         7.82        11.51 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B6 
        8.28        10.55       131.15         0.10         8.81         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM 
        4.01        11.05         8.94         7.96        10.98         6.12 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2ES TCGA-G2-A3IB 
        4.54        19.79         2.33         5.65        17.26         7.04 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS 
        2.24         1.32         1.38         2.50         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO 
        4.37         6.41         6.15         4.11         6.64         1.51 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        8.71         3.42         4.64 

  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                        0.43                         0.10 
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                      118.88                       131.15 
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                        7.69                         6.64 
[1] "0.4 - 118.9 (7.7)" "0.1 - 131.2 (6.6)"
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
  "DEL PEAK 30(17P12) MUTATED"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"DEL PEAK 30(17P12) WILD-TYPE"   "DEL PEAK 30(17P12) MUTATED" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 30(17P12) MUTATED" "DEL PEAK 30(17P12) WILD-TYPE" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 30(17P12) WILD-TYPE" "DEL PEAK 30(17P12) WILD-TYPE" 
[1] "hr=" "2"  
D57V2, continuous
D57V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 30(17P12) MUTATED     15   49
  DEL PEAK 30(17P12) WILD-TYPE   18   43
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  FEMALE                         15                           18
  MALE                           49                           43
D57V4, continuous
D57V5, continuous
D57V6, continuous
D57V7, continuous
                              vv
clus                           M0 M1 MX
  DEL PEAK 30(17P12) MUTATED   39  2 22
  DEL PEAK 30(17P12) WILD-TYPE 34  2 25
D57V8, multiclass
    clus
vv   DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  M0                         39                           34
  M1                          2                            2
  MX                         22                           25
                              vv
clus                           N0 N1 N2 N3 NX
  DEL PEAK 30(17P12) MUTATED   30  9 15  2  6
  DEL PEAK 30(17P12) WILD-TYPE 41  5  9  2  4
D57V9, multiclass
D57V10, continuous
D57V11, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 30(17P12) MUTATED         1       18        13       28
  DEL PEAK 30(17P12) WILD-TYPE       0       17        27       16
D57V12, multiclass
           clus
vv          DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  STAGE I                            1                            0
  STAGE II                          18                           17
  STAGE III                         13                           27
  STAGE IV                          28                           16

Clustering(58) Variable = Del Peak 31(18q23) mutation analysis
D58V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 31(18Q23) MUTATED   38 11
  DEL PEAK 31(18Q23) WILD-TYPE 49 20
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                          49                           69 
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                          11                           20 
$`DEL PEAK 31(18Q23) MUTATED`
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20W TCGA-BT-A2LA 
       11.93        19.00        26.10         5.06         8.35         5.88 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-DK-A1A5 TCGA-DK-A1A7 
        0.46         0.43        12.92         7.20         2.14         8.98 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A2HX 
        8.91       118.88       100.47         7.17         5.85         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
       10.59        75.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3NA 
       37.84         5.52        36.43         8.32         4.01        32.02 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-G2-A2EF 
        6.81         5.49         4.54        46.78         1.94        49.91 
TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A3OP 
       20.12         2.86         1.38         1.02         1.08         2.10 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A40G TCGA-H4-A2HQ 
        5.82         6.38         6.41         6.15         5.33         6.71 
TCGA-K4-A3WS 
        8.71 

$`DEL PEAK 31(18Q23) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20O 
       12.79         7.33         2.66         6.74         6.58        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X 
       17.85        19.46        14.89         8.61         5.06         8.25 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C 
        3.65         4.64         8.98         1.94         2.01         0.69 
TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 
        4.90         5.46         5.19         8.09         2.53        31.40 
TCGA-DK-A1AA TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IQ TCGA-DK-A3IU TCGA-DK-A3IV 
        7.04         6.64         7.76        10.49        11.51         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 
        8.28        10.55       131.15         0.10         8.81         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM 
        6.87        11.05         8.94         7.96        10.98         6.12 
TCGA-FD-A3SR TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       19.79         6.84         2.33        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78        17.26         7.04         0.82         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GU-A42Q TCGA-GV-A3JV 
        4.50         2.50         7.69         3.12         7.56         4.37 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.11         6.64         6.38 
TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A3WV 
        1.51         3.42         4.64 

  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                        0.43                         0.10 
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                      118.88                       131.15 
  DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE 
                        6.71                         7.04 
[1] "0.4 - 118.9 (6.7)" "0.1 - 131.2 (7.0)"
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BL-A0C8                   TCGA-BL-A13I 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BL-A13J                   TCGA-BL-A3JM 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A0S7                   TCGA-BT-A0YX 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20J                   TCGA-BT-A20N 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20O                   TCGA-BT-A20P 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A20Q                   TCGA-BT-A20R 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20T                   TCGA-BT-A20U 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-BT-A20V                   TCGA-BT-A20W 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A20X                   TCGA-BT-A2LA 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-BT-A2LD                   TCGA-BT-A3PH 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-C4-A0EZ                   TCGA-C4-A0F0 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-C4-A0F6                   TCGA-CF-A1HR 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-CF-A1HS                   TCGA-CF-A27C 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A0YN                   TCGA-CU-A0YO 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A0YR                   TCGA-CU-A3KJ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-CU-A3QU                   TCGA-CU-A3YL 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A1A3                   TCGA-DK-A1A5 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1A6                   TCGA-DK-A1A7 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AA                   TCGA-DK-A1AB 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AC                   TCGA-DK-A1AD 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AE                   TCGA-DK-A1AF 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A1AG                   TCGA-DK-A2HX 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A2I1                   TCGA-DK-A2I2 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A2I6                   TCGA-DK-A3IK 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IL                   TCGA-DK-A3IM 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IN                   TCGA-DK-A3IQ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3IS                   TCGA-DK-A3IT 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-DK-A3IU                   TCGA-DK-A3IV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3WW                   TCGA-DK-A3WX 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-DK-A3WY                   TCGA-E5-A2PC 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-E7-A3Y1                   TCGA-FD-A3B3 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3B4                   TCGA-FD-A3B5 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3B6                   TCGA-FD-A3B7 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3B8                   TCGA-FD-A3N5 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3N6                   TCGA-FD-A3NA 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SL                   TCGA-FD-A3SM 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-FD-A3SN                   TCGA-FD-A3SO 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SP                   TCGA-FD-A3SQ 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A3SR                   TCGA-FD-A3SS 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-FD-A43U                   TCGA-FT-A3EE 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EF                   TCGA-G2-A2EJ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EK                   TCGA-G2-A2EL 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A2EO                   TCGA-G2-A2ES 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-G2-A3IB                   TCGA-G2-A3IE 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-G2-A3VY                   TCGA-GC-A3BM 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GC-A3I6                   TCGA-GC-A3OO 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GC-A3RB                   TCGA-GC-A3RC 
"DEL PEAK 31(18Q23) WILD-TYPE"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GC-A3RD                   TCGA-GC-A3WC 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GC-A3YS                   TCGA-GD-A2C5 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GD-A3OP                   TCGA-GD-A3OQ 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GD-A3OS                   TCGA-GU-A42P 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GU-A42Q                   TCGA-GV-A3JV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3JW                   TCGA-GV-A3JX 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-GV-A3JZ                   TCGA-GV-A3QF 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3QH                   TCGA-GV-A3QI 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A3QK                   TCGA-GV-A40E 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-GV-A40G                   TCGA-H4-A2HO 
  "DEL PEAK 31(18Q23) MUTATED" "DEL PEAK 31(18Q23) WILD-TYPE" 
                  TCGA-H4-A2HQ                   TCGA-K4-A3WS 
  "DEL PEAK 31(18Q23) MUTATED"   "DEL PEAK 31(18Q23) MUTATED" 
                  TCGA-K4-A3WU                   TCGA-K4-A3WV 
"DEL PEAK 31(18Q23) WILD-TYPE" "DEL PEAK 31(18Q23) WILD-TYPE" 
[1] "hr=" "1.8"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 31(18Q23) MUTATED     15   39
  DEL PEAK 31(18Q23) WILD-TYPE   18   53
        clus
vv       DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  FEMALE                         15                           18
  MALE                           39                           53
D58V4, continuous
D58V5, continuous
D58V6, continuous
D58V7, continuous
                              vv
clus                           M0 M1 MX
  DEL PEAK 31(18Q23) MUTATED   33  1 20
  DEL PEAK 31(18Q23) WILD-TYPE 40  3 27
D58V8, multiclass
    clus
vv   DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  M0                         33                           40
  M1                          1                            3
  MX                         20                           27
                              vv
clus                           N0 N1 N2 N3 NX
  DEL PEAK 31(18Q23) MUTATED   31  6 10  1  5
  DEL PEAK 31(18Q23) WILD-TYPE 40  8 14  3  5
D58V9, multiclass
D58V10, continuous
D58V11, continuous
                              vv
clus                           STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 31(18Q23) MUTATED         0       17        15       19
  DEL PEAK 31(18Q23) WILD-TYPE       1       18        25       25
D58V12, multiclass
           clus
vv          DEL PEAK 31(18Q23) MUTATED DEL PEAK 31(18Q23) WILD-TYPE
  STAGE I                            0                            1
  STAGE II                          17                           18
  STAGE III                         15                           25
  STAGE IV                          19                           25

Clustering(59) Variable = Del Peak 32(19p13.3) mutation analysis
D59V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(19P13.3) MUTATED   35 12
  DEL PEAK 32(19P13.3) WILD-TYPE 52 19
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            47                             71 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            12                             19 
$`DEL PEAK 32(19P13.3) MUTATED`
TCGA-BT-A20J TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD 
       19.00         5.06        14.89         5.06         8.35         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-DK-A1A5 
        4.64         8.98         2.01         0.46         0.43         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IL 
        8.98         8.91       100.47         1.81        75.32         3.98 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B4 
        8.22        10.49         5.52         9.67        36.43         8.32 
TCGA-FD-A3B6 TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SS 
        6.87        10.98         6.12         6.81         5.49         1.94 
TCGA-G2-A2EF TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB 
       49.91        17.26         7.04        20.12         0.82         4.50 
TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3JX 
        1.02         1.08         6.38         7.56         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        5.69         5.33         1.51         6.71         8.71 

$`DEL PEAK 32(19P13.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20X 
       26.10        12.16        17.85        19.46         8.61         8.25 
TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        5.88         1.94         0.69        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1AA 
        5.46         5.19         8.09         2.53        31.40         7.04 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 
      118.88         7.17         5.85         6.64        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
        2.20         7.82        37.84        11.51         8.28        10.55 
TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
      131.15         0.10         8.81         8.94         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
        8.94         7.96        32.02         4.54        46.78        19.79 
TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        6.84         2.33        26.50         5.65        26.93        32.78 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A2C5 
        2.86         2.24         1.32         1.38         2.50         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3QF TCGA-GV-A3QH 
        2.10         3.12         5.82         4.37         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-K4-A3WU TCGA-K4-A3WV 
        4.11         6.64         6.38         3.42         4.64 

  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                          0.43                           0.10 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                        100.47                         131.15 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                          6.41                           7.20 
[1] "0.4 - 100.5 (6.4)" "0.1 - 131.2 (7.2)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
  "DEL PEAK 32(19P13.3) MUTATED" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(19P13.3) MUTATED     14   34
  DEL PEAK 32(19P13.3) WILD-TYPE   19   58
        clus
vv       DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  FEMALE                           14                             19
  MALE                             34                             58
D59V4, continuous
D59V5, continuous
D59V6, continuous
D59V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 32(19P13.3) MUTATED   26  4 17
  DEL PEAK 32(19P13.3) WILD-TYPE 47  0 30
D59V8, multiclass
    clus
vv   DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  M0                           26                             47
  M1                            4                              0
  MX                           17                             30
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 32(19P13.3) MUTATED   22  9  8  2  5
  DEL PEAK 32(19P13.3) WILD-TYPE 49  5 16  2  5
D59V9, multiclass
D59V10, continuous
D59V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 32(19P13.3) MUTATED         0       13        11       22
  DEL PEAK 32(19P13.3) WILD-TYPE       1       22        29       22
D59V12, multiclass
           clus
vv          DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                            13                             22
  STAGE III                           11                             29
  STAGE IV                            22                             22

Clustering(60) Variable = Del Peak 33(22q13.32) mutation analysis
D60V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 33(22Q13.32) MUTATED   34 13
  DEL PEAK 33(22Q13.32) WILD-TYPE 53 18
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             47                              71 
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                             13                              18 
$`DEL PEAK 33(22Q13.32) MUTATED`
TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A20W TCGA-C4-A0EZ 
        2.66        19.00         5.06         5.06         8.35         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A7 TCGA-DK-A1AC 
        1.94         2.01        12.92         5.19         8.98       118.88 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
        1.81         7.76         3.98         7.82         8.22        10.49 
TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        5.52        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SR 
        8.94        32.02        10.98         6.81         5.49        19.79 
TCGA-FD-A3SS TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        1.94         6.84        49.91         7.04        20.12         0.82 
TCGA-GC-A3RC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42Q TCGA-GV-A3JX 
        1.38         1.08         7.69         2.10         7.56         6.15 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.38         5.33         6.71         8.71         3.42 

$`DEL PEAK 33(22Q13.32) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N 
       12.79         7.33         6.74         6.58        11.93        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X 
       12.16        17.85        19.46        14.89         8.61         8.25 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        5.88         3.65         4.64         0.46         0.43         0.69 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.46         8.09         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       31.40         7.04         8.91       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IS TCGA-DK-A3IU 
        6.64        10.59        75.32         2.20        37.84        11.51 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 TCGA-FD-A3B7 
        9.67         8.28        10.55       131.15         0.10         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3SM TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FT-A3EE 
       11.05         7.96         6.12         4.54        46.78         2.33 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3BM 
       26.50         5.65        26.93        32.78        17.26         2.86 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OQ 
        2.24         1.32         4.50         1.02         2.50         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF 
        5.82         6.38         4.37         6.41         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WV 
        7.79         4.11         6.64         1.51         4.64 

  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                           0.82                            0.10 
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                         118.88                          131.15 
  DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE 
                           7.04                            6.64 
[1] "0.8 - 118.9 (7.0)" "0.1 - 131.2 (6.6)"
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A0C8                      TCGA-BL-A13I 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BL-A13J                      TCGA-BL-A3JM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A0S7                      TCGA-BT-A0YX 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20J                      TCGA-BT-A20N 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20O                      TCGA-BT-A20P 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20Q                      TCGA-BT-A20R 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-BT-A20T                      TCGA-BT-A20U 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A20V                      TCGA-BT-A20W 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-BT-A20X                      TCGA-BT-A2LA 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-BT-A2LD                      TCGA-BT-A3PH 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-C4-A0EZ                      TCGA-C4-A0F0 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-C4-A0F6                      TCGA-CF-A1HR 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CF-A1HS                      TCGA-CF-A27C 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A0YN                      TCGA-CU-A0YO 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A0YR                      TCGA-CU-A3KJ 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-CU-A3QU                      TCGA-CU-A3YL 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A3                      TCGA-DK-A1A5 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1A6                      TCGA-DK-A1A7 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A1AA                      TCGA-DK-A1AB 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AC                      TCGA-DK-A1AD 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AE                      TCGA-DK-A1AF 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A1AG                      TCGA-DK-A2HX 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A2I1                      TCGA-DK-A2I2 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A2I6                      TCGA-DK-A3IK 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3IL                      TCGA-DK-A3IM 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IN                      TCGA-DK-A3IQ 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IS                      TCGA-DK-A3IT 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-DK-A3IU                      TCGA-DK-A3IV 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3WW                      TCGA-DK-A3WX 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-DK-A3WY                      TCGA-E5-A2PC 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-E7-A3Y1                      TCGA-FD-A3B3 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3B4                      TCGA-FD-A3B5 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3B6                      TCGA-FD-A3B7 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3B8                      TCGA-FD-A3N5 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3N6                      TCGA-FD-A3NA 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3SL                      TCGA-FD-A3SM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3SN                      TCGA-FD-A3SO 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A3SP                      TCGA-FD-A3SQ 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-FD-A3SR                      TCGA-FD-A3SS 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-FD-A43U                      TCGA-FT-A3EE 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EF                      TCGA-G2-A2EJ 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EK                      TCGA-G2-A2EL 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A2EO                      TCGA-G2-A2ES 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-G2-A3IB                      TCGA-G2-A3IE 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-G2-A3VY                      TCGA-GC-A3BM 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3I6                      TCGA-GC-A3OO 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3RB                      TCGA-GC-A3RC 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GC-A3RD                      TCGA-GC-A3WC 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GC-A3YS                      TCGA-GD-A2C5 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GD-A3OP                      TCGA-GD-A3OQ 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GD-A3OS                      TCGA-GU-A42P 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GU-A42Q                      TCGA-GV-A3JV 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3JW                      TCGA-GV-A3JX 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GV-A3JZ                      TCGA-GV-A3QF 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3QH                      TCGA-GV-A3QI 
"DEL PEAK 33(22Q13.32) WILD-TYPE" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-GV-A3QK                      TCGA-GV-A40E 
"DEL PEAK 33(22Q13.32) WILD-TYPE"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-GV-A40G                      TCGA-H4-A2HO 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
                     TCGA-H4-A2HQ                      TCGA-K4-A3WS 
  "DEL PEAK 33(22Q13.32) MUTATED"   "DEL PEAK 33(22Q13.32) MUTATED" 
                     TCGA-K4-A3WU                      TCGA-K4-A3WV 
  "DEL PEAK 33(22Q13.32) MUTATED" "DEL PEAK 33(22Q13.32) WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 33(22Q13.32) MUTATED     14   34
  DEL PEAK 33(22Q13.32) WILD-TYPE   19   58
        clus
vv       DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  FEMALE                            14                              19
  MALE                              34                              58
D60V4, continuous
D60V5, continuous
D60V6, continuous
D60V7, continuous
                                 vv
clus                              M0 M1 MX
  DEL PEAK 33(22Q13.32) MUTATED   21  3 23
  DEL PEAK 33(22Q13.32) WILD-TYPE 52  1 24
D60V8, multiclass
    clus
vv   DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  M0                            21                              52
  M1                             3                               1
  MX                            23                              24
                                 vv
clus                              N0 N1 N2 N3 NX
  DEL PEAK 33(22Q13.32) MUTATED   24  7 10  2  4
  DEL PEAK 33(22Q13.32) WILD-TYPE 47  7 14  2  6
D60V9, multiclass
D60V10, continuous
D60V11, continuous
                                 vv
clus                              STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 33(22Q13.32) MUTATED         0       14        12       21
  DEL PEAK 33(22Q13.32) WILD-TYPE       1       21        28       23
D60V12, multiclass
           clus
vv          DEL PEAK 33(22Q13.32) MUTATED DEL PEAK 33(22Q13.32) WILD-TYPE
  STAGE I                               0                               1
  STAGE II                             14                              21
  STAGE III                            12                              28
  STAGE IV                             21                              23

Clustering(61) Variable = Del Peak 34(Xp11.3) mutation analysis
D61V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 34(XP11.3) MUTATED   22 10
  DEL PEAK 34(XP11.3) WILD-TYPE 65 21
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           32                            86 
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                           10                            21 
$`DEL PEAK 34(XP11.3) MUTATED`
TCGA-BL-A13J TCGA-BT-A20P TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A3PH TCGA-CF-A27C 
        2.66        17.85        14.89         5.06         4.64         0.69 
TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
       12.92         5.19         2.14         7.04         8.91       100.47 
TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        6.64        75.32        37.84         5.52         9.67        36.43 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3SN TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A2EL 
        8.32         6.87         6.81        19.79         1.94        26.93 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GD-A3OS TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI 
        7.04         2.86         5.82         6.15         7.79         4.11 
TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.71         8.71 

$`DEL PEAK 34(XP11.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W 
       26.10        12.16        19.46         5.06         8.61         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        8.25         5.88         3.65         8.98         1.94         2.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL 
        0.46         0.43         4.90         7.20         5.46         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF 
        2.53        31.40         8.98       118.88         7.17         5.85 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        1.81        10.59         7.76         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        8.22        10.49        11.51         8.28        10.55       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        0.10         8.81         8.94         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
        7.96        32.02        10.98         6.12         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A43U TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
       46.78         6.84         2.33        49.91        26.50         5.65 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78        17.26        20.12         0.82         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW 
        2.10         3.12         6.38         7.56         4.37         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        5.69         7.63         6.64         6.38         5.33         1.51 
TCGA-K4-A3WU TCGA-K4-A3WV 
        3.42         4.64 

  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                         0.69                          0.10 
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                       100.47                        131.15 
  DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE 
                        6.955                         6.790 
[1] "0.7 - 100.5 (7.0)" "0.1 - 131.2 (6.8)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
  "DEL PEAK 34(XP11.3) MUTATED" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 34(XP11.3) WILD-TYPE"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 34(XP11.3) MUTATED"   "DEL PEAK 34(XP11.3) MUTATED" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 34(XP11.3) WILD-TYPE" "DEL PEAK 34(XP11.3) WILD-TYPE" 
[1] "hr=" "1"  
D61V2, continuous
D61V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 34(XP11.3) MUTATED      7   29
  DEL PEAK 34(XP11.3) WILD-TYPE   26   63
        clus
vv       DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  FEMALE                           7                            26
  MALE                            29                            63
D61V4, continuous
D61V5, continuous
D61V6, continuous
D61V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 34(XP11.3) MUTATED   22  1 13
  DEL PEAK 34(XP11.3) WILD-TYPE 51  3 34
D61V8, multiclass
    clus
vv   DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  M0                          22                            51
  M1                           1                             3
  MX                          13                            34
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 34(XP11.3) MUTATED   19  4  5  1  6
  DEL PEAK 34(XP11.3) WILD-TYPE 52 10 19  3  4
D61V9, multiclass
D61V10, continuous
D61V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 34(XP11.3) MUTATED         0       13         9       13
  DEL PEAK 34(XP11.3) WILD-TYPE       1       22        31       31
D61V12, multiclass
           clus
vv          DEL PEAK 34(XP11.3) MUTATED DEL PEAK 34(XP11.3) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                           13                            22
  STAGE III                           9                            31
  STAGE IV                           13                            31

Clustering(62) Variable = Del Peak 35(Xq21.33) mutation analysis
D62V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 35(XQ21.33) MUTATED   23  5
  DEL PEAK 35(XQ21.33) WILD-TYPE 64 26
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                            28                             90 
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                             5                             26 
$`DEL PEAK 35(XQ21.33) MUTATED`
TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A3PH TCGA-CF-A1HS TCGA-CF-A27C 
       14.89         5.06         8.25         4.64         0.43         0.69 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A3IS TCGA-DK-A3IT 
        5.46         5.19         8.91       118.88        37.84         5.52 
TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3SN TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EL 
       36.43         8.32         6.81         1.94         2.33        26.93 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH 
        7.04         2.86         6.38         6.41         6.15         7.79 
TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV 
        4.11         5.33         6.71         4.64 

$`DEL PEAK 35(XQ21.33) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.61         8.35         5.88         3.65         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL 
        2.01         0.46        12.92         4.90         7.20         8.09 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AD 
        2.53         2.14        31.40         8.98         7.04       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       75.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-E7-A3Y1 
       11.51         9.67         8.28        10.55       131.15         0.10 
TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
        7.96        32.02        10.98         6.12         5.49         4.54 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43U TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
       46.78        19.79         6.84        49.91        26.50         5.65 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78        17.26        20.12         0.82         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JZ 
        2.10         3.12         5.82         7.56         4.37         5.69 
TCGA-GV-A3QF TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        7.63         6.64         6.38         1.51         8.71         3.42 

  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                          0.43                           0.10 
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                        118.88                         131.15 
  DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE 
                         6.265                          7.265 
[1] "0.4 - 118.9 (6.3)" "0.1 - 131.2 (7.3)"
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-BL-A0C8                     TCGA-BL-A13I 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BL-A13J                     TCGA-BL-A3JM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A0S7                     TCGA-BT-A0YX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20J                     TCGA-BT-A20N 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20O                     TCGA-BT-A20P 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20Q                     TCGA-BT-A20R 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20T                     TCGA-BT-A20U 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20V                     TCGA-BT-A20W 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A20X                     TCGA-BT-A2LA 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-BT-A2LD                     TCGA-BT-A3PH 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-C4-A0EZ                     TCGA-C4-A0F0 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-C4-A0F6                     TCGA-CF-A1HR 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-CF-A1HS                     TCGA-CF-A27C 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-CU-A0YN                     TCGA-CU-A0YO 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-CU-A0YR                     TCGA-CU-A3KJ 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-CU-A3QU                     TCGA-CU-A3YL 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A3                     TCGA-DK-A1A5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1A6                     TCGA-DK-A1A7 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AA                     TCGA-DK-A1AB 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-DK-A1AC                     TCGA-DK-A1AD 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AE                     TCGA-DK-A1AF 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A1AG                     TCGA-DK-A2HX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I1                     TCGA-DK-A2I2 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A2I6                     TCGA-DK-A3IK 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IL                     TCGA-DK-A3IM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IN                     TCGA-DK-A3IQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3IS                     TCGA-DK-A3IT 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-DK-A3IU                     TCGA-DK-A3IV 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3WW                     TCGA-DK-A3WX 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-DK-A3WY                     TCGA-E5-A2PC 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-E7-A3Y1                     TCGA-FD-A3B3 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B4                     TCGA-FD-A3B5 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B6                     TCGA-FD-A3B7 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3B8                     TCGA-FD-A3N5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3N6                     TCGA-FD-A3NA 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SL                     TCGA-FD-A3SM 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SN                     TCGA-FD-A3SO 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SP                     TCGA-FD-A3SQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-FD-A3SR                     TCGA-FD-A3SS 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-FD-A43U                     TCGA-FT-A3EE 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-G2-A2EF                     TCGA-G2-A2EJ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A2EK                     TCGA-G2-A2EL 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-G2-A2EO                     TCGA-G2-A2ES 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3IB                     TCGA-G2-A3IE 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-G2-A3VY                     TCGA-GC-A3BM 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GC-A3I6                     TCGA-GC-A3OO 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3RB                     TCGA-GC-A3RC 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3RD                     TCGA-GC-A3WC 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GC-A3YS                     TCGA-GD-A2C5 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GD-A3OP                     TCGA-GD-A3OQ 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GD-A3OS                     TCGA-GU-A42P 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GU-A42Q                     TCGA-GV-A3JV 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3JW                     TCGA-GV-A3JX 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GV-A3JZ                     TCGA-GV-A3QF 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A3QH                     TCGA-GV-A3QI 
  "DEL PEAK 35(XQ21.33) MUTATED"   "DEL PEAK 35(XQ21.33) MUTATED" 
                    TCGA-GV-A3QK                     TCGA-GV-A40E 
"DEL PEAK 35(XQ21.33) WILD-TYPE" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-GV-A40G                     TCGA-H4-A2HO 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-H4-A2HQ                     TCGA-K4-A3WS 
  "DEL PEAK 35(XQ21.33) MUTATED" "DEL PEAK 35(XQ21.33) WILD-TYPE" 
                    TCGA-K4-A3WU                     TCGA-K4-A3WV 
"DEL PEAK 35(XQ21.33) WILD-TYPE"   "DEL PEAK 35(XQ21.33) MUTATED" 
[1] "hr=" "1.4"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(XQ21.33) MUTATED      8   22
  DEL PEAK 35(XQ21.33) WILD-TYPE   25   70
        clus
vv       DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  FEMALE                            8                             25
  MALE                             22                             70
D62V4, continuous
D62V5, continuous
D62V6, continuous
D62V7, continuous
                                vv
clus                             M0 M1 MX
  DEL PEAK 35(XQ21.33) MUTATED   15  1 14
  DEL PEAK 35(XQ21.33) WILD-TYPE 58  3 33
D62V8, multiclass
    clus
vv   DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  M0                           15                             58
  M1                            1                              3
  MX                           14                             33
                                vv
clus                             N0 N1 N2 N3 NX
  DEL PEAK 35(XQ21.33) MUTATED   15  4  4  1  5
  DEL PEAK 35(XQ21.33) WILD-TYPE 56 10 20  3  5
D62V9, multiclass
D62V10, continuous
D62V11, continuous
                                vv
clus                             STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 35(XQ21.33) MUTATED         0        9         7       11
  DEL PEAK 35(XQ21.33) WILD-TYPE       1       26        33       33
D62V12, multiclass
           clus
vv          DEL PEAK 35(XQ21.33) MUTATED DEL PEAK 35(XQ21.33) WILD-TYPE
  STAGE I                              0                              1
  STAGE II                             9                             26
  STAGE III                            7                             33
  STAGE IV                            11                             33

Clustering(63) Variable = Del Peak 36(Xq22.3) mutation analysis
D63V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 36(XQ22.3) MUTATED   22  4
  DEL PEAK 36(XQ22.3) WILD-TYPE 65 27
  DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE 
                           26                            92 
  DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE 
                            4                            27 
$`DEL PEAK 36(XQ22.3) MUTATED`
TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C 
       26.10        14.89         4.64         2.01         0.43         0.69 
TCGA-CU-A3QU TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC 
        5.19         8.91       118.88        37.84         5.52        36.43 
TCGA-FD-A3B4 TCGA-FD-A3SN TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EL 
        8.32         6.81         1.94         2.33        49.91        26.93 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GU-A42P TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A40G 
        7.04         2.86         6.38         6.15         4.11         5.33 
TCGA-H4-A2HQ TCGA-K4-A3WV 
        6.71         4.64 

$`DEL PEAK 36(XQ22.3) WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.00        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
        5.06         8.35         8.25         5.88         3.65         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        1.94         0.46        12.92         4.90         7.20         5.46 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        8.09         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        7.76        75.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        11.51         9.67         8.28        10.55       131.15 
TCGA-E7-A3Y1 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.10         8.81         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO 
        8.94         7.96        32.02        10.98         6.12         5.49 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43U TCGA-G2-A2EJ TCGA-G2-A2EK 
        4.54        46.78        19.79         6.84        26.50         5.65 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       32.78        17.26        20.12         0.82         2.24         1.32 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50         1.38         1.02         2.50         1.08         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW 
        2.10         3.12         5.82         7.56         4.37         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO 
        5.69         7.63         7.79         6.64         6.38         1.51 
TCGA-K4-A3WS TCGA-K4-A3WU 
        8.71         3.42 

  DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE 
                         0.43                          0.10 
  DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE 
                       118.88                        131.15 
  DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE 
                        6.265                         7.185 
[1] "0.4 - 118.9 (6.3)" "0.1 - 131.2 (7.2)"
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 36(XQ22.3) MUTATED"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 36(XQ22.3) MUTATED"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 36(XQ22.3) MUTATED"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 36(XQ22.3) MUTATED"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-BL-A0C8                    TCGA-BL-A13I 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BL-A13J                    TCGA-BL-A3JM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A0S7                    TCGA-BT-A0YX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20J                    TCGA-BT-A20N 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-BT-A20O                    TCGA-BT-A20P 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20Q                    TCGA-BT-A20R 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20T                    TCGA-BT-A20U 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20V                    TCGA-BT-A20W 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A20X                    TCGA-BT-A2LA 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-BT-A2LD                    TCGA-BT-A3PH 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-C4-A0EZ                    TCGA-C4-A0F0 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-C4-A0F6                    TCGA-CF-A1HR 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CF-A1HS                    TCGA-CF-A27C 
  "DEL PEAK 36(XQ22.3) MUTATED"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-CU-A0YN                    TCGA-CU-A0YO 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CU-A0YR                    TCGA-CU-A3KJ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-CU-A3QU                    TCGA-CU-A3YL 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1A3                    TCGA-DK-A1A5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1A6                    TCGA-DK-A1A7 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AA                    TCGA-DK-A1AB 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-DK-A1AC                    TCGA-DK-A1AD 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AE                    TCGA-DK-A1AF 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A1AG                    TCGA-DK-A2HX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A2I1                    TCGA-DK-A2I2 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A2I6                    TCGA-DK-A3IK 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IL                    TCGA-DK-A3IM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IN                    TCGA-DK-A3IQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3IS                    TCGA-DK-A3IT 
  "DEL PEAK 36(XQ22.3) MUTATED"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-DK-A3IU                    TCGA-DK-A3IV 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3WW                    TCGA-DK-A3WX 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-DK-A3WY                    TCGA-E5-A2PC 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-E7-A3Y1                    TCGA-FD-A3B3 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B4                    TCGA-FD-A3B5 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B6                    TCGA-FD-A3B7 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3B8                    TCGA-FD-A3N5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3N6                    TCGA-FD-A3NA 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SL                    TCGA-FD-A3SM 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SN                    TCGA-FD-A3SO 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SP                    TCGA-FD-A3SQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-FD-A3SR                    TCGA-FD-A3SS 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-FD-A43U                    TCGA-FT-A3EE 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-G2-A2EF                    TCGA-G2-A2EJ 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A2EK                    TCGA-G2-A2EL 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-G2-A2EO                    TCGA-G2-A2ES 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A3IB                    TCGA-G2-A3IE 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-G2-A3VY                    TCGA-GC-A3BM 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GC-A3I6                    TCGA-GC-A3OO 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3RB                    TCGA-GC-A3RC 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3RD                    TCGA-GC-A3WC 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GC-A3YS                    TCGA-GD-A2C5 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GD-A3OP                    TCGA-GD-A3OQ 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GD-A3OS                    TCGA-GU-A42P 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GU-A42Q                    TCGA-GV-A3JV 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A3JW                    TCGA-GV-A3JX 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GV-A3JZ                    TCGA-GV-A3QF 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A3QH                    TCGA-GV-A3QI 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
                   TCGA-GV-A3QK                    TCGA-GV-A40E 
"DEL PEAK 36(XQ22.3) WILD-TYPE" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-GV-A40G                    TCGA-H4-A2HO 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-H4-A2HQ                    TCGA-K4-A3WS 
  "DEL PEAK 36(XQ22.3) MUTATED" "DEL PEAK 36(XQ22.3) WILD-TYPE" 
                   TCGA-K4-A3WU                    TCGA-K4-A3WV 
"DEL PEAK 36(XQ22.3) WILD-TYPE"   "DEL PEAK 36(XQ22.3) MUTATED" 
[1] "hr=" "2.4"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 36(XQ22.3) MUTATED      8   20
  DEL PEAK 36(XQ22.3) WILD-TYPE   25   72
        clus
vv       DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE
  FEMALE                           8                            25
  MALE                            20                            72
D63V4, continuous
D63V5, continuous
D63V6, continuous
D63V7, continuous
                               vv
clus                            M0 M1 MX
  DEL PEAK 36(XQ22.3) MUTATED   14  1 13
  DEL PEAK 36(XQ22.3) WILD-TYPE 59  3 34
D63V8, multiclass
    clus
vv   DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE
  M0                          14                            59
  M1                           1                             3
  MX                          13                            34
                               vv
clus                            N0 N1 N2 N3 NX
  DEL PEAK 36(XQ22.3) MUTATED   17  4  2  1  3
  DEL PEAK 36(XQ22.3) WILD-TYPE 54 10 22  3  7
D63V9, multiclass
D63V10, continuous
D63V11, continuous
                               vv
clus                            STAGE I STAGE II STAGE III STAGE IV
  DEL PEAK 36(XQ22.3) MUTATED         0        8         8        9
  DEL PEAK 36(XQ22.3) WILD-TYPE       1       27        32       35
D63V12, multiclass
           clus
vv          DEL PEAK 36(XQ22.3) MUTATED DEL PEAK 36(XQ22.3) WILD-TYPE
  STAGE I                             0                             1
  STAGE II                            8                            27
  STAGE III                           8                            32
  STAGE IV                            9                            35
                            V1.D                               V2 
                 "Time to Death"                            "AGE" 
                              V3                               V4 
                        "GENDER"    "KARNOFSKY.PERFORMANCE.SCORE" 
                              V5                               V6 
         "NUMBERPACKYEARSSMOKED"             "STOPPEDSMOKINGYEAR" 
                              V7                               V8 
"TOBACCOSMOKINGHISTORYINDICATOR"             "DISTANT.METASTASIS" 
                              V9                              V10 
         "LYMPH.NODE.METASTASIS"          "NUMBER.OF.LYMPH.NODES" 
                             V11                              V12 
               "TUMOR.STAGECODE"          "NEOPLASM.DISEASESTAGE" 
> q(save="no")
