ClinicalAnalysisAllGenes_new1 data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/BLCA-TP/2660647/0.GDAC_MethylationPreprocess.Finished/BLCA-TP.meth.for_correlation.filtered_data.txt |
ClinicalAnalysisAllGenes_new1 clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA-TP/2585709/1.GDAC_clinicalDataPicker.Finished/BLCA-TP.clin.merged.picked.txt |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff p | 1 |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff fdr | 0.05 |
ClinicalAnalysisAllGenesReport_nozzle2 max table rows | 10 |
ClinicalAnalysisAllGenesReport_nozzle2 nozzle ver | Nozzle.R1 |
ClinicalAnalysisAllGenesReport_nozzle2 options | METHYLATION |
Execution Times: | |
Submitted: | 13:09:25 04-03-13 |
Completed: | |
Elapsed: | 00 hrs 15 mins 38 secs |
step 1. ClinicalAnalysisAllGenes_new [id: 332521] Associate individual gene expression profiles to clinical parameters by survival test, t-test, correlation test, or ANOVA test
urn:lsid:broadinstitute.org:cancer.genome.analysis:00333:14
data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/BLCA-TP/2660647/0.GDAC_MethylationPreprocess.Finished/BLCA-TP.meth.for_correlation.filtered_data.txt |
clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA-TP/2585709/1.GDAC_clinicalDataPicker.Finished/BLCA-TP.clin.merged.picked.txt |
genes filtered by list | |
genes filtered by variance | ALL |
samples filtered by list | |
features used | ALL |
output name | |
job description |
Execution Times: | |
Submitted: | 13:09:26 04-03-13 |
Completed: | 13:24:48 04-03-13 |
Elapsed: | 00 hrs 15 mins 22 secs |
step 2. ClinicalAnalysisAllGenesReport_nozzle [id: 332522] Generate a report to summarize the results from ClinicalAnalysisAllGenes module
urn:lsid:broadinstitute.org:cancer.genome.analysis:00334:29
all result file | BLCA-TP.meth.for_correlation.filtered_data.clinical.results.txt |
RData file | BLCA-TP.meth.for_correlation.filtered_data.analysis.results.RData |
expression file | BLCA-TP.meth.for_correlation.filtered_data.exprdata.gct |
clinical file | BLCA-TP.clin.merged.picked.clindata.txt |
cutoff p | 1 |
cutoff fdr | 0.05 |
max table rows | 10 |
nozzle ver | Nozzle.R1 |
options | METHYLATION |
report title | |
job description |
Execution Times: | |
Submitted: | 13:09:26 04-03-13 |
Completed: | 13:25:03 04-03-13 |
Elapsed: | 00 hrs 15 mins 37 secs |