
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.47.4101/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.47.4101/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/351812/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/CESC-TP/2587644/1.GDAC_clinicalDataPicker.Finished/CESC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=40, in cluster file=114, common to both=34
[1] "Reduce the number of clustering variables from 48 to 45."
[1] 45 34
[1] "Amp Peak  1(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           24                            10 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           24                            10 
[1] "Amp Peak  2(2p24.3) mutation analysis"
[1] 3
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           10                            24 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           10                            24 
[1] "Amp Peak  3(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           27                             7 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           27                             7 
[1] "Amp Peak  4(3q28) mutation analysis"
[1] 3
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         27                           7 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         27                           7 
[1] "Amp Peak  5(4q12) mutation analysis"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          5                          29 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          5                          29 
[1] "Amp Peak  6(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            14                             20 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            14                             20 
[1] "Amp Peak  7(6q12) mutation analysis"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          4                          30 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          4                          30 
[1] "Amp Peak  8(7p11.2) mutation analysis"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            8                            26 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            8                            26 
[1] "Amp Peak  9(8q24.21) mutation analysis"
[1] 3
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            16                             18 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            16                             18 
[1] "Amp Peak 10(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            7                            27 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            7                            27 
[1] "Amp Peak 12(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             4                             30 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             4                             30 
[1] "Amp Peak 13(11q22.1) mutation analysis"
[1] 3
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             7                             27 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             7                             27 
[1] "Amp Peak 14(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                             4                             30 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                             4                             30 
[1] "Amp Peak 15(14q24.1) mutation analysis"
[1] 3
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                             7                             27 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                             7                             27 
[1] "Amp Peak 16(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            10                             24 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            10                             24 
[1] "Amp Peak 17(16p13.13) mutation analysis"
[1] 3
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              8                              26 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              8                              26 
[1] "Amp Peak 18(17q12) mutation analysis"
[1] 3
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           5                           29 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           5                           29 
[1] "Amp Peak 19(17q25.1) mutation analysis"
[1] 3
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                            10                             24 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                            10                             24 
[1] "Amp Peak 20(19q13.31) mutation analysis"
[1] 3
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                             11                              23 
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                             11                              23 
[1] "Amp Peak 21(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             19                              15 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             19                              15 
[1] "Amp Peak 22(Xq28) mutation analysis"
[1] 3
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          7                          27 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          7                          27 
[1] "Del Peak  1(1p36.22) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             6                             28 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             6                             28 
[1] "Del Peak  2(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            4                            30 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            4                            30 
[1] "Del Peak  3(2q37.1) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           14                            20 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           14                            20 
[1] "Del Peak  4(3p11.2) mutation analysis"
[1] 3
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                           17                            17 
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                           17                            17 
[1] "Del Peak  5(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                            8                            26 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                            8                            26 
[1] "Del Peak  6(4q35.2) mutation analysis"
[1] 3
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           12                            22 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           12                            22 
[1] "Del Peak  7(5q15) mutation analysis"
[1] 3
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         16                          18 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         16                          18 
[1] "Del Peak  8(6p24.3) mutation analysis"
[1] 3
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                            6                            28 
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                            6                            28 
[1] "Del Peak 10(6q26) mutation analysis"
[1] 3
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                          8                          26 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                          8                          26 
[1] "Del Peak 11(7q34) mutation analysis"
[1] 3
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                          7                          27 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                          7                          27 
[1] "Del Peak 12(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                              7                              27 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                              7                              27 
[1] "Del Peak 13(11q25) mutation analysis"
[1] 3
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                          23                           11 
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                          23                           11 
[1] "Del Peak 14(13q12.12) mutation analysis"
[1] 3
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                             13                              21 
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                             13                              21 
[1] "Del Peak 15(13q13.3) mutation analysis"
[1] 3
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                            13                             21 
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                            13                             21 
[1] "Del Peak 17(14q32.31) mutation analysis"
[1] 3
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                              3                              31 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                              3                              31 
[1] "Del Peak 18(16q11.2) mutation analysis"
[1] 3
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                             3                             31 
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                             3                             31 
[1] "Del Peak 19(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             3                             31 
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             3                             31 
[1] "Del Peak 20(17p12) mutation analysis"
[1] 3
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                          12                           22 
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                          12                           22 
[1] "Del Peak 21(17q25.3) mutation analysis"
[1] 3
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                             8                             26 
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                             8                             26 
[1] "Del Peak 22(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                             9                             25 
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                             9                             25 
[1] "Del Peak 23(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                             6                             28 
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                             6                             28 
[1] "Del Peak 24(21q21.1) mutation analysis"
[1] 3
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                             9                             25 
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                             9                             25 
[1] "Del Peak 25(Xp11.3) mutation analysis"
[1] 3
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                           13                            21 
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                           13                            21 
[1] "Del Peak 26(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                            10                             24 
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                            10                             24 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "RADIATIONS.RADIATION.REGIMENINDICATION"
[11] "NUMBERPACKYEARSSMOKED"                 
[12] "STOPPEDSMOKINGYEAR"                    
[13] "TOBACCOSMOKINGHISTORYINDICATOR"        
[14] "DISTANT.METASTASIS"                    
[15] "LYMPH.NODE.METASTASIS"                 
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "TUMOR.STAGECODE"                       
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 34 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
        1505          925         5385           NA           NA         1616 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
          NA           NA           NA         2382         2155         1289 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT 
          NA           81         2127         2892          183            8 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EK-A2PI TCGA-EX-A1H5 
          53           40           25           19           NA          178 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
         211           37           37           30           66            2 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
          31           44          773          168 
Variable 1:'AGE':	nDistinctValues=27,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=27,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'NUMBERPACKYEARSSMOKED':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'STOPPEDSMOKINGYEAR':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'DISTANT.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'LYMPH.NODE.METASTASIS':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'TUMOR.STAGECODE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "HISTOLOGICAL.TYPE"                     
 [3] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [4] "NUMBERPACKYEARSSMOKED"                 
 [5] "STOPPEDSMOKINGYEAR"                    
 [6] "TOBACCOSMOKINGHISTORYINDICATOR"        
 [7] "DISTANT.METASTASIS"                    
 [8] "LYMPH.NODE.METASTASIS"                 
 [9] "NUMBER.OF.LYMPH.NODES"                 
[10] "TUMOR.STAGECODE"                       
[1] "TUMOR.?STAGE" "10"          
[1] "stage2"
vv
 T1B T1B1 T1B2  T2A T2A1 T2A2  T2B  T3B 
   5   10    4    2    2    1    5    1 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 34 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=27, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=9, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=4, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=TRUE
DISTANT.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
LYMPH.NODE.METASTASIS, nv=2, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=4, binary=FALSE, numeric=TRUE
TUMOR.STAGECODE, nv=0, binary=FALSE, numeric=TRUE

Clustering(1) Variable = Amp Peak  1(1q21.3) mutation analysis
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1Q21.3) MUTATED   20  3
  AMP PEAK  1(1Q21.3) WILD-TYPE  7  3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           23                            10 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                            3                             3 
$`AMP PEAK  1(1Q21.3) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41       177.04         5.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
        2.43        78.31        70.85        42.38         2.66        69.93 
TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A3L1 
        6.02         1.74         1.32         0.82         0.62         6.94 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        1.22         2.17         1.45        25.41         5.52 

$`AMP PEAK  1(1Q21.3) WILD-TYPE`
TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EX-A1H5 
       67.46        40.93        36.76        95.08         0.26         5.85 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22         0.99         0.07         1.02 

  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                         0.62                          0.07 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                       177.04                         95.08 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                        6.020                         3.535 
[1] "0.6 - 177.0 (6.0)" "0.1 - 95.1 (3.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JK 
  "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JK 
  "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  1(1Q21.3) WILD-TYPE"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  1(1Q21.3) WILD-TYPE" "AMP PEAK  1(1Q21.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "AMP PEAK  1(1Q21.3) MUTATED"   "AMP PEAK  1(1Q21.3) MUTATED" 
                   TCGA-HM-A3JK 
  "AMP PEAK  1(1Q21.3) MUTATED" 
[1] "hr=" "2.3"
D1V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  1(1Q21.3) MUTATED                                 18
  AMP PEAK  1(1Q21.3) WILD-TYPE                                9
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  1(1Q21.3) MUTATED                                     1
  AMP PEAK  1(1Q21.3) WILD-TYPE                                   0
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  AMP PEAK  1(1Q21.3) MUTATED                         5
  AMP PEAK  1(1Q21.3) WILD-TYPE                       1
D1V3, multiclass
                                     clus
vv                                    AMP PEAK  1(1Q21.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                             18
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       5
                                     clus
vv                                    AMP PEAK  1(1Q21.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                9
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             0
  SQUAMOUS CELL CARCINOMA                                         1
D1V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED      7   17
  AMP PEAK  1(1Q21.3) WILD-TYPE    3    7
     clus
vv    AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  NO                            7                             3
  YES                          17                             7
D1V5, continuous
D1V6, continuous
[1] "Remove cluster labels:"        "AMP PEAK  1(1Q21.3) WILD-TYPE"
clus
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                            4                             1 
                 TCGA-BI-A0VR                  TCGA-C5-A1MF 
"AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-HM-A3JK 
"AMP PEAK  1(1Q21.3) MUTATED" "AMP PEAK  1(1Q21.3) MUTATED" 
D1V7, continuous
D1V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     15    6
  AMP PEAK  1(1Q21.3) WILD-TYPE    5    3
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  M0                          15                             5
  MX                           6                             3
D1V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1Q21.3) MUTATED     14    7
  AMP PEAK  1(1Q21.3) WILD-TYPE    5    4
    clus
vv   AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  N0                          14                             5
  N1                           7                             4
D1V10, continuous
D1V11, continuous

Clustering(2) Variable = Amp Peak  2(2p24.3) mutation analysis
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(2P24.3) MUTATED    7  2
  AMP PEAK  2(2P24.3) WILD-TYPE 20  4
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                            9                            24 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                            2                             4 
$`AMP PEAK  2(2P24.3) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EX-A3L1 
       30.41         5.46        35.61         6.02         1.32         6.94 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY 
        1.22         0.99         0.07 

$`AMP PEAK  2(2P24.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN 
       49.48       177.04        67.46        53.13         2.43        40.93 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       78.31        70.85        42.38        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 
       95.08         0.26         1.74         0.82         0.62         5.85 
TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        1.22         2.17         1.02         1.45        25.41         5.52 

  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                         0.07                          0.26 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                        35.61                        177.04 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                         5.46                         15.63 
[1] "0.1 - 35.6 (5.5)"   "0.3 - 177.0 (15.6)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  2(2P24.3) WILD-TYPE"   "AMP PEAK  2(2P24.3) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "AMP PEAK  2(2P24.3) MUTATED" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" 
[1] "hr=" "9.8"
D2V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  2(2P24.3) MUTATED                                  7
  AMP PEAK  2(2P24.3) WILD-TYPE                               20
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  2(2P24.3) MUTATED                                     0
  AMP PEAK  2(2P24.3) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  AMP PEAK  2(2P24.3) MUTATED                         3
  AMP PEAK  2(2P24.3) WILD-TYPE                       3
D2V3, multiclass
                                     clus
vv                                    AMP PEAK  2(2P24.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              7
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       3
                                     clus
vv                                    AMP PEAK  2(2P24.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               20
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         3
D2V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) MUTATED      3    7
  AMP PEAK  2(2P24.3) WILD-TYPE    7   17
     clus
vv    AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  NO                            3                             7
  YES                           7                            17
D2V5, continuous
D2V6, continuous
[1] "Remove cluster labels:"      "AMP PEAK  2(2P24.3) MUTATED"
clus
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                            2                             3 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"AMP PEAK  2(2P24.3) WILD-TYPE" "AMP PEAK  2(2P24.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  2(2P24.3) WILD-TYPE" 
D2V7, continuous
D2V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) MUTATED      5    2
  AMP PEAK  2(2P24.3) WILD-TYPE   15    7
    clus
vv   AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  M0                           5                            15
  MX                           2                             7
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(2P24.3) MUTATED      5    3
  AMP PEAK  2(2P24.3) WILD-TYPE   14    8
    clus
vv   AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  N0                           5                            14
  N1                           3                             8
D2V10, continuous
D2V11, continuous

Clustering(3) Variable = Amp Peak  3(3q26.2) mutation analysis
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(3Q26.2) MUTATED   21  5
  AMP PEAK  3(3Q26.2) WILD-TYPE  6  1
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           26                             7 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                            5                             1 
$`AMP PEAK  3(3Q26.2) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41       177.04        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL 
        2.43        40.93        78.31        70.85        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       69.93        95.08         6.02         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3NI 
        0.82         0.62         5.85         6.94         1.22         1.45 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

$`AMP PEAK  3(3Q26.2) WILD-TYPE`
TCGA-C5-A1BN TCGA-DR-A0ZM TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        5.46        42.38         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ 
        1.02 

  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                         0.26                          0.07 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                       177.04                         42.38 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                       16.175                         1.220 
[1] "0.3 - 177.0 (16.2)" "0.1 - 42.4 (1.2)"  
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A3JK 
  "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A3JK 
  "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  3(3Q26.2) WILD-TYPE"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  3(3Q26.2) WILD-TYPE" "AMP PEAK  3(3Q26.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "AMP PEAK  3(3Q26.2) MUTATED"   "AMP PEAK  3(3Q26.2) MUTATED" 
                   TCGA-HM-A3JK 
  "AMP PEAK  3(3Q26.2) MUTATED" 
[1] "hr=" "2.4"
D3V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  3(3Q26.2) MUTATED                                 22
  AMP PEAK  3(3Q26.2) WILD-TYPE                                5
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  3(3Q26.2) MUTATED                                     0
  AMP PEAK  3(3Q26.2) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  AMP PEAK  3(3Q26.2) MUTATED                         5
  AMP PEAK  3(3Q26.2) WILD-TYPE                       1
D3V3, multiclass
                                     clus
vv                                    AMP PEAK  3(3Q26.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                             22
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       5
                                     clus
vv                                    AMP PEAK  3(3Q26.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                5
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         1
D3V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3Q26.2) MUTATED      9   18
  AMP PEAK  3(3Q26.2) WILD-TYPE    1    6
     clus
vv    AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  NO                            9                             1
  YES                          18                             6
D3V5, continuous
D3V6, continuous
[1] "Remove cluster labels:"        "AMP PEAK  3(3Q26.2) WILD-TYPE"
clus
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                            4                             1 
                 TCGA-BI-A0VR                  TCGA-C5-A1MF 
"AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-HM-A3JK 
"AMP PEAK  3(3Q26.2) MUTATED" "AMP PEAK  3(3Q26.2) MUTATED" 
D3V7, continuous
D3V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3Q26.2) MUTATED     18    6
  AMP PEAK  3(3Q26.2) WILD-TYPE    2    3
    clus
vv   AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  M0                          18                             2
  MX                           6                             3
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3Q26.2) MUTATED     16    8
  AMP PEAK  3(3Q26.2) WILD-TYPE    3    3
    clus
vv   AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  N0                          16                             3
  N1                           8                             3
D3V10, continuous
D3V11, continuous

Clustering(4) Variable = Amp Peak  4(3q28) mutation analysis
D4V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  4(3Q28) MUTATED   21  5
  AMP PEAK  4(3Q28) WILD-TYPE  6  1
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         26                           7 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                          5                           1 
$`AMP PEAK  4(3Q28) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41       177.04        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL 
        2.43        40.93        78.31        70.85        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       69.93        95.08         6.02         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3NI 
        0.82         0.62         5.85         6.94         1.22         1.45 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

$`AMP PEAK  4(3Q28) WILD-TYPE`
TCGA-C5-A1BN TCGA-DR-A0ZM TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        5.46        42.38         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ 
        1.02 

  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                       0.26                        0.07 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                     177.04                       42.38 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                     16.175                       1.220 
[1] "0.3 - 177.0 (16.2)" "0.1 - 42.4 (1.2)"  
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A3JK 
  "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A3JK 
  "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  4(3Q28) WILD-TYPE"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  4(3Q28) WILD-TYPE" "AMP PEAK  4(3Q28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "AMP PEAK  4(3Q28) MUTATED"   "AMP PEAK  4(3Q28) MUTATED" 
                 TCGA-HM-A3JK 
  "AMP PEAK  4(3Q28) MUTATED" 
[1] "hr=" "2.4"
D4V2, continuous
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  4(3Q28) MUTATED                                 22
  AMP PEAK  4(3Q28) WILD-TYPE                                5
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  4(3Q28) MUTATED                                     0
  AMP PEAK  4(3Q28) WILD-TYPE                                   1
                             vv
clus                          SQUAMOUS CELL CARCINOMA
  AMP PEAK  4(3Q28) MUTATED                         5
  AMP PEAK  4(3Q28) WILD-TYPE                       1
D4V3, multiclass
                                     clus
vv                                    AMP PEAK  4(3Q28) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                           22
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                         0
  SQUAMOUS CELL CARCINOMA                                     5
                                     clus
vv                                    AMP PEAK  4(3Q28) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                              5
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       1
D4V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(3Q28) MUTATED      9   18
  AMP PEAK  4(3Q28) WILD-TYPE    1    6
     clus
vv    AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  NO                          9                           1
  YES                        18                           6
D4V5, continuous
D4V6, continuous
[1] "Remove cluster labels:"      "AMP PEAK  4(3Q28) WILD-TYPE"
clus
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                          4                           1 
               TCGA-BI-A0VR                TCGA-C5-A1MF 
"AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) MUTATED" 
               TCGA-DS-A3LQ                TCGA-HM-A3JK 
"AMP PEAK  4(3Q28) MUTATED" "AMP PEAK  4(3Q28) MUTATED" 
D4V7, continuous
D4V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(3Q28) MUTATED     18    6
  AMP PEAK  4(3Q28) WILD-TYPE    2    3
    clus
vv   AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  M0                        18                           2
  MX                         6                           3
D4V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  4(3Q28) MUTATED     16    8
  AMP PEAK  4(3Q28) WILD-TYPE    3    3
    clus
vv   AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  N0                        16                           3
  N1                         8                           3
D4V10, continuous
D4V11, continuous

Clustering(5) Variable = Amp Peak  5(4q12) mutation analysis
D5V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  5(4Q12) MUTATED    3  1
  AMP PEAK  5(4Q12) WILD-TYPE 24  5
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          4                          29 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          1                           5 
$`AMP PEAK  5(4Q12) MUTATED`
TCGA-C5-A1MF TCGA-C5-A1MN TCGA-DS-A3LQ TCGA-FU-A23K 
       53.13        40.93         6.02         1.22 

$`AMP PEAK  5(4Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI 
       49.48        30.41       177.04         5.46        67.46        35.61 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
        2.43        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       69.93        95.08         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        0.62         5.85         6.94         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        0.07         1.02         1.45        25.41         5.52 

  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                       1.22                        0.07 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                      53.13                      177.04 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                     23.475                       5.520 
[1] "1.2 - 53.1 (23.5)" "0.1 - 177.0 (5.5)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  5(4Q12) WILD-TYPE"   "AMP PEAK  5(4Q12) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
  "AMP PEAK  5(4Q12) MUTATED" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  5(4Q12) WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  5(4Q12) MUTATED                                  4
  AMP PEAK  5(4Q12) WILD-TYPE                               23
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  5(4Q12) MUTATED                                     0
  AMP PEAK  5(4Q12) WILD-TYPE                                   1
                             vv
clus                          SQUAMOUS CELL CARCINOMA
  AMP PEAK  5(4Q12) MUTATED                         1
  AMP PEAK  5(4Q12) WILD-TYPE                       5
D5V3, multiclass
                                     clus
vv                                    AMP PEAK  5(4Q12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                            4
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                         0
  SQUAMOUS CELL CARCINOMA                                     1
                                     clus
vv                                    AMP PEAK  5(4Q12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                             23
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       5
D5V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(4Q12) MUTATED      3    2
  AMP PEAK  5(4Q12) WILD-TYPE    7   22
     clus
vv    AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  NO                          3                           7
  YES                         2                          22
D5V5, continuous
[1] "Remove cluster labels:"    "AMP PEAK  5(4Q12) MUTATED"
clus
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          2                           8 
                 TCGA-BI-A0VR                  TCGA-C5-A1BN 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-DR-A0ZM 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-FU-A2QG 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-FU-A3EO                  TCGA-FU-A3HY 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
D5V6, continuous
[1] "Remove cluster labels:"    "AMP PEAK  5(4Q12) MUTATED"
clus
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                          2                           3 
                 TCGA-BI-A0VR                  TCGA-FU-A2QG 
"AMP PEAK  5(4Q12) WILD-TYPE" "AMP PEAK  5(4Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  5(4Q12) WILD-TYPE" 
D5V7, continuous
D5V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(4Q12) MUTATED      1    2
  AMP PEAK  5(4Q12) WILD-TYPE   19    7
    clus
vv   AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  M0                         1                          19
  MX                         2                           7
D5V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  5(4Q12) MUTATED      1    2
  AMP PEAK  5(4Q12) WILD-TYPE   18    9
    clus
vv   AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  N0                         1                          18
  N1                         2                           9
D5V10, continuous
D5V11, continuous

Clustering(6) Variable = Amp Peak  6(5p15.33) mutation analysis
D6V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  6(5P15.33) MUTATED   12  1
  AMP PEAK  6(5P15.33) WILD-TYPE 15  5
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            13                             20 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                             1                              5 
$`AMP PEAK  6(5P15.33) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1MN TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
       49.48        30.41        40.93         2.66        69.93         6.02 
TCGA-EA-A3HR TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        1.32         5.85         6.94         1.22         0.07         1.45 
TCGA-HG-A2PA 
       25.41 

$`AMP PEAK  6(5P15.33) WILD-TYPE`
TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
      177.04         5.46        67.46        53.13        35.61         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT 
       78.31        70.85        42.38        36.76        95.08         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
        1.74         0.82         0.62         1.22         0.99         2.17 
TCGA-FU-A3HZ TCGA-HM-A3JK 
        1.02         5.52 

  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                          0.07                           0.26 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                         69.93                         177.04 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                          6.02                           5.49 
[1] "0.1 - 69.9 (6.0)"  "0.3 - 177.0 (5.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-HM-A3JK 
"AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-HM-A3JK 
"AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK  6(5P15.33) WILD-TYPE"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  6(5P15.33) MUTATED" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK  6(5P15.33) MUTATED"   "AMP PEAK  6(5P15.33) MUTATED" 
                    TCGA-HM-A3JK 
"AMP PEAK  6(5P15.33) WILD-TYPE" 
[1] "hr=" "2.3"
D6V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  6(5P15.33) MUTATED                                 10
  AMP PEAK  6(5P15.33) WILD-TYPE                               17
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  6(5P15.33) MUTATED                                     0
  AMP PEAK  6(5P15.33) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK  6(5P15.33) MUTATED                         4
  AMP PEAK  6(5P15.33) WILD-TYPE                       2
D6V3, multiclass
                                     clus
vv                                    AMP PEAK  6(5P15.33) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              10
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        4
                                     clus
vv                                    AMP PEAK  6(5P15.33) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                17
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          2
D6V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(5P15.33) MUTATED      3   11
  AMP PEAK  6(5P15.33) WILD-TYPE    7   13
     clus
vv    AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  NO                             3                              7
  YES                           11                             13
D6V5, continuous
D6V6, continuous
[1] "Remove cluster labels:"       "AMP PEAK  6(5P15.33) MUTATED"
clus
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                             2                              3 
                    TCGA-C5-A1MF                     TCGA-FU-A2QG 
"AMP PEAK  6(5P15.33) WILD-TYPE" "AMP PEAK  6(5P15.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  6(5P15.33) WILD-TYPE" 
D6V7, continuous
D6V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(5P15.33) MUTATED      8    4
  AMP PEAK  6(5P15.33) WILD-TYPE   12    5
    clus
vv   AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  M0                            8                             12
  MX                            4                              5
D6V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(5P15.33) MUTATED      6    6
  AMP PEAK  6(5P15.33) WILD-TYPE   13    5
    clus
vv   AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  N0                            6                             13
  N1                            6                              5
D6V10, continuous
D6V11, continuous

Clustering(7) Variable = Amp Peak  7(6q12) mutation analysis
D7V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  7(6Q12) MUTATED    3  1
  AMP PEAK  7(6Q12) WILD-TYPE 24  5
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          4                          29 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          1                           5 
$`AMP PEAK  7(6Q12) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-DS-A3LQ TCGA-FU-A23L 
       30.41        35.61         6.02         1.22 

$`AMP PEAK  7(6Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48       177.04         5.46        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       69.93        95.08         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
        0.62         5.85         6.94         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        0.07         1.02         1.45        25.41         5.52 

  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                       1.22                        0.07 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                      35.61                      177.04 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                     18.215                       5.520 
[1] "1.2 - 35.6 (18.2)" "0.1 - 177.0 (5.5)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK  7(6Q12) WILD-TYPE" 
[1] "hr=" "3.5"
D7V2, continuous
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  7(6Q12) MUTATED                                  3
  AMP PEAK  7(6Q12) WILD-TYPE                               24
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  7(6Q12) MUTATED                                     0
  AMP PEAK  7(6Q12) WILD-TYPE                                   1
                             vv
clus                          SQUAMOUS CELL CARCINOMA
  AMP PEAK  7(6Q12) MUTATED                         1
  AMP PEAK  7(6Q12) WILD-TYPE                       5
D7V3, multiclass
                                     clus
vv                                    AMP PEAK  7(6Q12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                            3
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                         0
  SQUAMOUS CELL CARCINOMA                                     1
                                     clus
vv                                    AMP PEAK  7(6Q12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                             24
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       5
D7V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED      2    2
  AMP PEAK  7(6Q12) WILD-TYPE    8   22
     clus
vv    AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  NO                          2                           8
  YES                         2                          22
D7V5, continuous
[1] "Remove cluster labels:"    "AMP PEAK  7(6Q12) MUTATED"
clus
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          1                           9 
                 TCGA-BI-A0VR                  TCGA-C5-A1BN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-C5-A1MF                  TCGA-C5-A1MN 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-EX-A1H5 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A3HY 
"AMP PEAK  7(6Q12) WILD-TYPE" 
D7V6, continuous
[1] "Remove cluster labels:"    "AMP PEAK  7(6Q12) MUTATED"
clus
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          1                           4 
                 TCGA-BI-A0VR                  TCGA-C5-A1MF 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-HM-A3JK 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
D7V7, continuous
D7V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED      3    1
  AMP PEAK  7(6Q12) WILD-TYPE   17    8
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  M0                         3                          17
  MX                         1                           8
D7V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED      2    2
  AMP PEAK  7(6Q12) WILD-TYPE   17    9
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  N0                         2                          17
  N1                         2                           9
D7V10, continuous
D7V11, continuous

Clustering(8) Variable = Amp Peak  8(7p11.2) mutation analysis
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(7P11.2) MUTATED    5  3
  AMP PEAK  8(7P11.2) WILD-TYPE 22  3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            8                            25 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            3                             3 
$`AMP PEAK  8(7P11.2) MUTATED`
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A3LQ 
        2.43        40.93        78.31        70.85        36.76         6.02 
TCGA-EX-A3L1 TCGA-FU-A23L 
        6.94         1.22 

$`AMP PEAK  8(7P11.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT 
       35.61        42.38         2.66        69.93        95.08         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-FU-A23K 
        1.74         1.32         0.82         0.62         5.85         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA 
        0.99         2.17         0.07         1.02         1.45        25.41 
TCGA-HM-A3JK 
        5.52 

  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                         1.22                          0.07 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                        78.31                        177.04 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                        21.85                          5.46 
[1] "1.2 - 78.3 (21.8)" "0.1 - 177.0 (5.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK  8(7P11.2) WILD-TYPE" 
[1] "hr=" "2"  
D8V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  8(7P11.2) MUTATED                                  6
  AMP PEAK  8(7P11.2) WILD-TYPE                               21
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  8(7P11.2) MUTATED                                     0
  AMP PEAK  8(7P11.2) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  AMP PEAK  8(7P11.2) MUTATED                         2
  AMP PEAK  8(7P11.2) WILD-TYPE                       4
D8V3, multiclass
                                     clus
vv                                    AMP PEAK  8(7P11.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       2
                                     clus
vv                                    AMP PEAK  8(7P11.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         4
D8V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED      4    4
  AMP PEAK  8(7P11.2) WILD-TYPE    6   20
     clus
vv    AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  NO                            4                             6
  YES                           4                            20
D8V5, continuous
[1] "Remove cluster labels:"      "AMP PEAK  8(7P11.2) MUTATED"
clus
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            1                             9 
                   TCGA-BI-A0VR                    TCGA-C5-A1BN 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-EX-A1H5 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY 
"AMP PEAK  8(7P11.2) WILD-TYPE" 
D8V6, continuous
[1] "Remove cluster labels:"      "AMP PEAK  8(7P11.2) MUTATED"
clus
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            1                             4 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-HM-A3JK 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
D8V7, continuous
D8V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED      5    1
  AMP PEAK  8(7P11.2) WILD-TYPE   15    8
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  M0                           5                            15
  MX                           1                             8
D8V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED      4    2
  AMP PEAK  8(7P11.2) WILD-TYPE   15    9
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  N0                           4                            15
  N1                           2                             9
D8V10, continuous
D8V11, continuous

Clustering(9) Variable = Amp Peak  9(8q24.21) mutation analysis
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(8Q24.21) MUTATED   13  3
  AMP PEAK  9(8Q24.21) WILD-TYPE 14  3
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            16                             17 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                             3                              3 
$`AMP PEAK  9(8Q24.21) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41       177.04        67.46        53.13        35.61         2.43 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       70.85         2.66        69.93         6.02         0.26         1.74 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        1.22         1.22         0.07         1.45 

$`AMP PEAK  9(8Q24.21) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BN TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK 
       49.48         5.46        40.93        78.31        42.38        36.76 
TCGA-DS-A0VN TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 
       95.08         1.32         0.82         0.62         5.85         6.94 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-HG-A2PA TCGA-HM-A3JK 
        0.99         2.17         1.02        25.41         5.52 

  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                          0.07                           0.62 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                        177.04                          95.08 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                          4.34                           5.85 
[1] "0.1 - 177.0 (4.3)" "0.6 - 95.1 (5.8)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK  9(8Q24.21) WILD-TYPE"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
  "AMP PEAK  9(8Q24.21) MUTATED"   "AMP PEAK  9(8Q24.21) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK  9(8Q24.21) MUTATED" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  9(8Q24.21) WILD-TYPE" 
[1] "hr=" "1"  
D9V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK  9(8Q24.21) MUTATED                                 13
  AMP PEAK  9(8Q24.21) WILD-TYPE                               14
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK  9(8Q24.21) MUTATED                                     0
  AMP PEAK  9(8Q24.21) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK  9(8Q24.21) MUTATED                         3
  AMP PEAK  9(8Q24.21) WILD-TYPE                       3
D9V3, multiclass
                                     clus
vv                                    AMP PEAK  9(8Q24.21) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              13
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        3
                                     clus
vv                                    AMP PEAK  9(8Q24.21) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                14
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          3
D9V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(8Q24.21) MUTATED      4   12
  AMP PEAK  9(8Q24.21) WILD-TYPE    6   12
     clus
vv    AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  NO                             4                              6
  YES                           12                             12
D9V5, continuous
D9V6, continuous
[1] "Remove cluster labels:"       "AMP PEAK  9(8Q24.21) MUTATED"
clus
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                             2                              3 
                    TCGA-BI-A0VR                     TCGA-FU-A2QG 
"AMP PEAK  9(8Q24.21) WILD-TYPE" "AMP PEAK  9(8Q24.21) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK  9(8Q24.21) WILD-TYPE" 
D9V7, continuous
D9V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(8Q24.21) MUTATED      9    6
  AMP PEAK  9(8Q24.21) WILD-TYPE   11    3
    clus
vv   AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  M0                            9                             11
  MX                            6                              3
D9V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(8Q24.21) MUTATED      9    6
  AMP PEAK  9(8Q24.21) WILD-TYPE   10    5
    clus
vv   AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  N0                            9                             10
  N1                            6                              5
D9V10, continuous
D9V11, continuous

Clustering(10) Variable = Amp Peak 10(9p24.1) mutation analysis
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(9P24.1) MUTATED    7  0
  AMP PEAK 10(9P24.1) WILD-TYPE 20  6
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            7                            26 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            0                             6 
$`AMP PEAK 10(9P24.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EX-A3L1 
       49.48       177.04        69.93         6.02         0.26         6.94 
TCGA-FU-A23K 
        1.22 

$`AMP PEAK 10(9P24.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41         5.46        67.46        53.13        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VN TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 
       95.08         1.74         1.32         0.82         0.62         5.85 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.99         2.17         0.07         1.02         1.45 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                         0.26                          0.07 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                       177.04                         95.08 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                         6.94                          5.49 
[1] "0.3 - 177.0 (6.9)" "0.1 - 95.1 (5.5)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "AMP PEAK 10(9P24.1) MUTATED"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"AMP PEAK 10(9P24.1) WILD-TYPE"   "AMP PEAK 10(9P24.1) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
  "AMP PEAK 10(9P24.1) MUTATED" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" 
[1] "hr="     "3.1e+08"
D10V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 10(9P24.1) MUTATED                                  5
  AMP PEAK 10(9P24.1) WILD-TYPE                               22
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 10(9P24.1) MUTATED                                     0
  AMP PEAK 10(9P24.1) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  AMP PEAK 10(9P24.1) MUTATED                         2
  AMP PEAK 10(9P24.1) WILD-TYPE                       4
D10V3, multiclass
                                     clus
vv                                    AMP PEAK 10(9P24.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              5
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       2
                                     clus
vv                                    AMP PEAK 10(9P24.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               22
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         4
D10V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) MUTATED      1    6
  AMP PEAK 10(9P24.1) WILD-TYPE    9   18
     clus
vv    AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  NO                            1                             9
  YES                           6                            18
D10V5, continuous
[1] "Remove cluster labels:"      "AMP PEAK 10(9P24.1) MUTATED"
clus
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            1                             9 
                   TCGA-C5-A1BN                    TCGA-C5-A1MF 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MN 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-EX-A1H5 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-FU-A3HY 
"AMP PEAK 10(9P24.1) WILD-TYPE" 
D10V6, continuous
[1] "Remove cluster labels:"      "AMP PEAK 10(9P24.1) MUTATED"
clus
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                            2                             3 
                   TCGA-C5-A1MF                    TCGA-FU-A2QG 
"AMP PEAK 10(9P24.1) WILD-TYPE" "AMP PEAK 10(9P24.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"AMP PEAK 10(9P24.1) WILD-TYPE" 
D10V7, continuous
D10V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) MUTATED      5    2
  AMP PEAK 10(9P24.1) WILD-TYPE   15    7
    clus
vv   AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  M0                           5                            15
  MX                           2                             7
D10V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(9P24.1) MUTATED      3    4
  AMP PEAK 10(9P24.1) WILD-TYPE   16    7
    clus
vv   AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  N0                           3                            16
  N1                           4                             7
D10V10, continuous
D10V11, continuous

Clustering(11) Variable = Amp Peak 12(11q13.3) mutation analysis
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(11Q13.3) MUTATED    2  1
  AMP PEAK 12(11Q13.3) WILD-TYPE 25  5
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             3                             30 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             1                              5 
$`AMP PEAK 12(11Q13.3) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MF TCGA-EA-A1QT 
        5.46        53.13         0.26 

$`AMP PEAK 12(11Q13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK 
       49.48        30.41       177.04        67.46        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       69.93        95.08         6.02         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
        0.62         5.85         6.94         1.22         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        2.17         0.07         1.02         1.45        25.41         5.52 

  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                          0.26                           0.07 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                         53.13                         177.04 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                         5.460                          5.935 
[1] "0.3 - 53.1 (5.5)"  "0.1 - 177.0 (5.9)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 12(11Q13.3) WILD-TYPE"   "AMP PEAK 12(11Q13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" 
[1] "hr=" "2.4"
D11V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 12(11Q13.3) MUTATED                                  4
  AMP PEAK 12(11Q13.3) WILD-TYPE                               23
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 12(11Q13.3) MUTATED                                     0
  AMP PEAK 12(11Q13.3) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK 12(11Q13.3) MUTATED                         0
  AMP PEAK 12(11Q13.3) WILD-TYPE                       6
D11V3, multiclass
                                     clus
vv                                    AMP PEAK 12(11Q13.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               4
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        0
                                     clus
vv                                    AMP PEAK 12(11Q13.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                23
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          6
D11V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) MUTATED      2    2
  AMP PEAK 12(11Q13.3) WILD-TYPE    8   22
     clus
vv    AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  NO                             2                              8
  YES                            2                             22
D11V5, continuous
[1] "Remove cluster labels:"       "AMP PEAK 12(11Q13.3) MUTATED"
clus
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             2                              8 
                    TCGA-BI-A0VR                     TCGA-C5-A1MI 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3HY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
D11V6, continuous
[1] "Remove cluster labels:"       "AMP PEAK 12(11Q13.3) MUTATED"
clus
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             1                              4 
                    TCGA-BI-A0VR                     TCGA-DS-A3LQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
D11V7, continuous
D11V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) MUTATED      1    1
  AMP PEAK 12(11Q13.3) WILD-TYPE   19    8
    clus
vv   AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  M0                            1                             19
  MX                            1                              8
D11V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 12(11Q13.3) MUTATED      2    0
  AMP PEAK 12(11Q13.3) WILD-TYPE   17   11
    clus
vv   AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  N0                            2                             17
  N1                            0                             11
D11V10, continuous
[1] "Remove cluster labels:"       "AMP PEAK 12(11Q13.3) MUTATED"
clus
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                             2                             28 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1M5 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A2LY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A3HQ 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EX-A1H5 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-FU-A23K 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A23L                     TCGA-FU-A2QG 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3HY 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HZ                     TCGA-FU-A3NI 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JK 
"AMP PEAK 12(11Q13.3) WILD-TYPE" "AMP PEAK 12(11Q13.3) WILD-TYPE" 
D11V11, continuous

Clustering(12) Variable = Amp Peak 13(11q22.1) mutation analysis
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(11Q22.1) MUTATED    5  2
  AMP PEAK 13(11Q22.1) WILD-TYPE 22  4
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             7                             26 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             2                              4 
$`AMP PEAK 13(11Q22.1) MUTATED`
TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL 
      177.04         5.46        78.31        70.85        36.76         2.66 
TCGA-EX-A3L1 
        6.94 

$`AMP PEAK 13(11Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       49.48        30.41        67.46        53.13        35.61         2.43 
TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT 
       40.93        42.38        69.93        95.08         6.02         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-FU-A23K 
        1.74         1.32         0.82         0.62         5.85         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.99         2.17         0.07         1.02         1.45 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                          2.66                           0.07 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                        177.04                          95.08 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                        36.760                          3.975 
[1] "2.7 - 177.0 (36.8)" "0.1 - 95.1 (4.0)"  
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "AMP PEAK 13(11Q22.1) MUTATED" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 13(11Q22.1) MUTATED"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 13(11Q22.1) WILD-TYPE"   "AMP PEAK 13(11Q22.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 13(11Q22.1) WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 13(11Q22.1) MUTATED                                  6
  AMP PEAK 13(11Q22.1) WILD-TYPE                               21
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 13(11Q22.1) MUTATED                                     0
  AMP PEAK 13(11Q22.1) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK 13(11Q22.1) MUTATED                         1
  AMP PEAK 13(11Q22.1) WILD-TYPE                       5
D12V3, multiclass
                                     clus
vv                                    AMP PEAK 13(11Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        1
                                     clus
vv                                    AMP PEAK 13(11Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          5
D12V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) MUTATED      2    5
  AMP PEAK 13(11Q22.1) WILD-TYPE    8   19
     clus
vv    AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  NO                             2                              8
  YES                            5                             19
D12V5, continuous
[1] "Remove cluster labels:"       "AMP PEAK 13(11Q22.1) MUTATED"
clus
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                             1                              9 
                    TCGA-BI-A0VR                     TCGA-C5-A1MF 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 13(11Q22.1) WILD-TYPE" "AMP PEAK 13(11Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY 
"AMP PEAK 13(11Q22.1) WILD-TYPE" 
D12V6, continuous
D12V7, continuous
D12V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) MUTATED      5    1
  AMP PEAK 13(11Q22.1) WILD-TYPE   15    8
    clus
vv   AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  M0                            5                             15
  MX                            1                              8
D12V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(11Q22.1) MUTATED      5    1
  AMP PEAK 13(11Q22.1) WILD-TYPE   14   10
    clus
vv   AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  N0                            5                             14
  N1                            1                             10
D12V10, continuous
D12V11, continuous

Clustering(13) Variable = Amp Peak 14(13q22.1) mutation analysis
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(13Q22.1) MUTATED    3  1
  AMP PEAK 14(13Q22.1) WILD-TYPE 24  5
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                             4                             29 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                             1                              5 
$`AMP PEAK 14(13Q22.1) MUTATED`
TCGA-C5-A1BN TCGA-DS-A0VM TCGA-EA-A3HT TCGA-FU-A3HY 
        5.46        69.93         0.62         0.07 

$`AMP PEAK 14(13Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41       177.04        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        2.66        95.08         6.02         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
        0.82         5.85         6.94         1.22         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        2.17         1.02         1.45        25.41         5.52 

  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                          0.07                           0.26 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                         69.93                         177.04 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                          3.04                           6.02 
[1] "0.1 - 69.9 (3.0)"  "0.3 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 14(13Q22.1) WILD-TYPE"   "AMP PEAK 14(13Q22.1) MUTATED" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 14(13Q22.1) MUTATED" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 14(13Q22.1) WILD-TYPE" 
[1] "hr=" "1.7"
D13V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 14(13Q22.1) MUTATED                                  2
  AMP PEAK 14(13Q22.1) WILD-TYPE                               25
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 14(13Q22.1) MUTATED                                     0
  AMP PEAK 14(13Q22.1) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK 14(13Q22.1) MUTATED                         2
  AMP PEAK 14(13Q22.1) WILD-TYPE                       4
D13V3, multiclass
                                     clus
vv                                    AMP PEAK 14(13Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               2
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        2
                                     clus
vv                                    AMP PEAK 14(13Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                25
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          4
D13V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) MUTATED      1    3
  AMP PEAK 14(13Q22.1) WILD-TYPE    9   21
     clus
vv    AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  NO                             1                              9
  YES                            3                             21
D13V5, continuous
[1] "Remove cluster labels:"       "AMP PEAK 14(13Q22.1) MUTATED"
clus
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                             2                              8 
                    TCGA-BI-A0VR                     TCGA-C5-A1MF 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 14(13Q22.1) WILD-TYPE" "AMP PEAK 14(13Q22.1) WILD-TYPE" 
D13V6, continuous
D13V7, continuous
D13V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) MUTATED      2    1
  AMP PEAK 14(13Q22.1) WILD-TYPE   18    8
    clus
vv   AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  M0                            2                             18
  MX                            1                              8
D13V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 14(13Q22.1) MUTATED      1    2
  AMP PEAK 14(13Q22.1) WILD-TYPE   18    9
    clus
vv   AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  N0                            1                             18
  N1                            2                              9
D13V10, continuous
D13V11, continuous

Clustering(14) Variable = Amp Peak 15(14q24.1) mutation analysis
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 15(14Q24.1) MUTATED    5  1
  AMP PEAK 15(14Q24.1) WILD-TYPE 22  5
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                             6                             27 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                             1                              5 
$`AMP PEAK 15(14Q24.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-EA-A3HQ TCGA-EX-A3L1 TCGA-FU-A3HY TCGA-FU-A3NI 
       30.41        35.61         1.74         6.94         0.07         1.45 

$`AMP PEAK 15(14Q24.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48       177.04         5.46        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS 
       69.93        95.08         6.02         0.26         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        0.62         5.85         1.22         1.22         0.99         2.17 
TCGA-FU-A3HZ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02        25.41         5.52 

  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                          0.07                           0.26 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                         35.61                         177.04 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                          4.34                           5.85 
[1] "0.1 - 35.6 (4.3)"  "0.3 - 177.0 (5.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 15(14Q24.1) WILD-TYPE"   "AMP PEAK 15(14Q24.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK 15(14Q24.1) MUTATED" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 15(14Q24.1) WILD-TYPE" 
[1] "hr=" "3.5"
D14V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 15(14Q24.1) MUTATED                                  4
  AMP PEAK 15(14Q24.1) WILD-TYPE                               23
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 15(14Q24.1) MUTATED                                     0
  AMP PEAK 15(14Q24.1) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK 15(14Q24.1) MUTATED                         3
  AMP PEAK 15(14Q24.1) WILD-TYPE                       3
D14V3, multiclass
                                     clus
vv                                    AMP PEAK 15(14Q24.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               4
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        3
                                     clus
vv                                    AMP PEAK 15(14Q24.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                23
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          3
D14V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(14Q24.1) MUTATED      1    6
  AMP PEAK 15(14Q24.1) WILD-TYPE    9   18
     clus
vv    AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  NO                             1                              9
  YES                            6                             18
D14V5, continuous
[1] "Remove cluster labels:"       "AMP PEAK 15(14Q24.1) MUTATED"
clus
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                             2                              8 
                    TCGA-BI-A0VR                     TCGA-C5-A1BN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MN 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 15(14Q24.1) WILD-TYPE" "AMP PEAK 15(14Q24.1) WILD-TYPE" 
D14V6, continuous
D14V7, continuous
D14V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(14Q24.1) MUTATED      4    2
  AMP PEAK 15(14Q24.1) WILD-TYPE   16    7
    clus
vv   AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  M0                            4                             16
  MX                            2                              7
D14V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(14Q24.1) MUTATED      3    3
  AMP PEAK 15(14Q24.1) WILD-TYPE   16    8
    clus
vv   AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  N0                            3                             16
  N1                            3                              8
D14V10, continuous
D14V11, continuous

Clustering(15) Variable = Amp Peak 16(15q26.3) mutation analysis
D15V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(15Q26.3) MUTATED    8  1
  AMP PEAK 16(15Q26.3) WILD-TYPE 19  5
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                             9                             24 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                             1                              5 
$`AMP PEAK 16(15Q26.3) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1MK TCGA-DS-A0VL TCGA-EA-A3HQ TCGA-EA-A3HR 
       49.48       177.04         2.43         2.66         1.74         1.32 
TCGA-EX-A3L1 TCGA-FU-A23L TCGA-HM-A3JK 
        6.94         1.22         5.52 

$`AMP PEAK 16(15Q26.3) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MN 
       30.41         5.46        67.46        53.13        35.61        40.93 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN 
       78.31        70.85        42.38        36.76        69.93        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-FU-A23K 
        6.02         0.26         0.82         0.62         5.85         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA 
        0.99         2.17         0.07         1.02         1.45        25.41 

  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                          1.22                           0.07 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                        177.04                          95.08 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                         2.660                         15.715 
[1] "1.2 - 177.0 (2.7)" "0.1 - 95.1 (15.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 16(15Q26.3) MUTATED" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 16(15Q26.3) MUTATED" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 16(15Q26.3) MUTATED"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
  "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 16(15Q26.3) MUTATED" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 16(15Q26.3) MUTATED" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 16(15Q26.3) MUTATED"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
  "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "AMP PEAK 16(15Q26.3) MUTATED" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "AMP PEAK 16(15Q26.3) MUTATED" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 16(15Q26.3) MUTATED"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 16(15Q26.3) WILD-TYPE"   "AMP PEAK 16(15Q26.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
  "AMP PEAK 16(15Q26.3) MUTATED" 
[1] "hr=" "1.3"
D15V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 16(15Q26.3) MUTATED                                  8
  AMP PEAK 16(15Q26.3) WILD-TYPE                               19
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 16(15Q26.3) MUTATED                                     0
  AMP PEAK 16(15Q26.3) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK 16(15Q26.3) MUTATED                         2
  AMP PEAK 16(15Q26.3) WILD-TYPE                       4
D15V3, multiclass
                                     clus
vv                                    AMP PEAK 16(15Q26.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               8
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        2
                                     clus
vv                                    AMP PEAK 16(15Q26.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                19
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          4
D15V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.3) MUTATED      2    8
  AMP PEAK 16(15Q26.3) WILD-TYPE    8   16
     clus
vv    AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  NO                             2                              8
  YES                            8                             16
D15V5, continuous
[1] "Remove cluster labels:"       "AMP PEAK 16(15Q26.3) MUTATED"
clus
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                             1                              9 
                    TCGA-C5-A1BN                     TCGA-C5-A1MF 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MN 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-EX-A1H5 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A3HY 
"AMP PEAK 16(15Q26.3) WILD-TYPE" 
D15V6, continuous
[1] "Remove cluster labels:"       "AMP PEAK 16(15Q26.3) MUTATED"
clus
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                             2                              3 
                    TCGA-C5-A1MF                     TCGA-DS-A3LQ 
"AMP PEAK 16(15Q26.3) WILD-TYPE" "AMP PEAK 16(15Q26.3) WILD-TYPE" 
                    TCGA-FU-A2QG 
"AMP PEAK 16(15Q26.3) WILD-TYPE" 
D15V7, continuous
D15V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.3) MUTATED      5    3
  AMP PEAK 16(15Q26.3) WILD-TYPE   15    6
    clus
vv   AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  M0                            5                             15
  MX                            3                              6
D15V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(15Q26.3) MUTATED      6    2
  AMP PEAK 16(15Q26.3) WILD-TYPE   13    9
    clus
vv   AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  N0                            6                             13
  N1                            2                              9
D15V10, continuous
D15V11, continuous

Clustering(16) Variable = Amp Peak 17(16p13.13) mutation analysis
D16V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 17(16P13.13) MUTATED    7  0
  AMP PEAK 17(16P13.13) WILD-TYPE 20  6
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              7                              26 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              0                               6 
$`AMP PEAK 17(16P13.13) MUTATED`
TCGA-BI-A0VS TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3NI 
       30.41         6.02         1.74         1.22         2.17         1.45 
TCGA-HM-A3JK 
        5.52 

$`AMP PEAK 17(16P13.13) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48       177.04         5.46        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS 
        2.66        69.93        95.08         0.26         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY 
        0.62         5.85         6.94         1.22         0.99         0.07 
TCGA-FU-A3HZ TCGA-HG-A2PA 
        1.02        25.41 

  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                           1.22                            0.07 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                          30.41                          177.04 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                          2.170                          16.175 
[1] "1.2 - 30.4 (2.2)"   "0.1 - 177.0 (16.2)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 17(16P13.13) WILD-TYPE"   "AMP PEAK 17(16P13.13) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 17(16P13.13) MUTATED" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "AMP PEAK 17(16P13.13) MUTATED" 
[1] "hr="     "8.5e+07"
D16V2, continuous
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 17(16P13.13) MUTATED                                  4
  AMP PEAK 17(16P13.13) WILD-TYPE                               23
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 17(16P13.13) MUTATED                                     1
  AMP PEAK 17(16P13.13) WILD-TYPE                                   0
                                 vv
clus                              SQUAMOUS CELL CARCINOMA
  AMP PEAK 17(16P13.13) MUTATED                         3
  AMP PEAK 17(16P13.13) WILD-TYPE                       3
D16V3, multiclass
                                     clus
vv                                    AMP PEAK 17(16P13.13) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                4
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         3
                                     clus
vv                                    AMP PEAK 17(16P13.13) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                 23
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                               0
  SQUAMOUS CELL CARCINOMA                                           3
D16V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(16P13.13) MUTATED      2    6
  AMP PEAK 17(16P13.13) WILD-TYPE    8   18
     clus
vv    AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  NO                              2                               8
  YES                             6                              18
D16V5, continuous
[1] "Remove cluster labels:"        "AMP PEAK 17(16P13.13) MUTATED"
clus
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              1                               9 
                     TCGA-BI-A0VR                      TCGA-C5-A1BN 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MF                      TCGA-C5-A1MI 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-DR-A0ZM 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-FU-A2QG 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A3HY 
"AMP PEAK 17(16P13.13) WILD-TYPE" 
D16V6, continuous
[1] "Remove cluster labels:"        "AMP PEAK 17(16P13.13) MUTATED"
clus
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                              2                               3 
                     TCGA-BI-A0VR                      TCGA-C5-A1MF 
"AMP PEAK 17(16P13.13) WILD-TYPE" "AMP PEAK 17(16P13.13) WILD-TYPE" 
                     TCGA-FU-A2QG 
"AMP PEAK 17(16P13.13) WILD-TYPE" 
D16V7, continuous
D16V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(16P13.13) MUTATED      3    4
  AMP PEAK 17(16P13.13) WILD-TYPE   17    5
    clus
vv   AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  M0                             3                              17
  MX                             4                               5
D16V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 17(16P13.13) MUTATED      4    3
  AMP PEAK 17(16P13.13) WILD-TYPE   15    8
    clus
vv   AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  N0                             4                              15
  N1                             3                               8
D16V10, continuous
D16V11, continuous

Clustering(17) Variable = Amp Peak 18(17q12) mutation analysis
D17V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 18(17Q12) MUTATED    4  1
  AMP PEAK 18(17Q12) WILD-TYPE 23  5
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           5                           28 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           1                            5 
$`AMP PEAK 18(17Q12) MUTATED`
TCGA-C5-A1MI TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EX-A3L1 
       35.61        69.93         6.02         1.32         6.94 

$`AMP PEAK 18(17Q12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41       177.04         5.46        67.46        53.13 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
        2.66        95.08         0.26         1.74         0.82         0.62 
TCGA-EX-A1H5 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        5.85         1.22         1.22         0.99         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02         1.45        25.41         5.52 

  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                        1.32                         0.07 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                       69.93                       177.04 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                        6.94                         5.49 
[1] "1.3 - 69.9 (6.9)"  "0.1 - 177.0 (5.5)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "AMP PEAK 18(17Q12) MUTATED" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
"AMP PEAK 18(17Q12) WILD-TYPE"   "AMP PEAK 18(17Q12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"AMP PEAK 18(17Q12) WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 18(17Q12) MUTATED                                  3
  AMP PEAK 18(17Q12) WILD-TYPE                               24
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 18(17Q12) MUTATED                                     0
  AMP PEAK 18(17Q12) WILD-TYPE                                   1
                              vv
clus                           SQUAMOUS CELL CARCINOMA
  AMP PEAK 18(17Q12) MUTATED                         2
  AMP PEAK 18(17Q12) WILD-TYPE                       4
D17V3, multiclass
                                     clus
vv                                    AMP PEAK 18(17Q12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                             3
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                          0
  SQUAMOUS CELL CARCINOMA                                      2
                                     clus
vv                                    AMP PEAK 18(17Q12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                              24
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            1
  SQUAMOUS CELL CARCINOMA                                        4
D17V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED      2    3
  AMP PEAK 18(17Q12) WILD-TYPE    8   21
     clus
vv    AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  NO                           2                            8
  YES                          3                           21
D17V5, continuous
[1] "Remove cluster labels:"     "AMP PEAK 18(17Q12) MUTATED"
clus
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           1                            9 
                  TCGA-BI-A0VR                   TCGA-C5-A1BN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-C5-A1MF                   TCGA-C5-A1MN 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-DR-A0ZM                   TCGA-EX-A1H5 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A3HY 
"AMP PEAK 18(17Q12) WILD-TYPE" 
D17V6, continuous
[1] "Remove cluster labels:"     "AMP PEAK 18(17Q12) MUTATED"
clus
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                           1                            4 
                  TCGA-BI-A0VR                   TCGA-C5-A1MF 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-HM-A3JK 
"AMP PEAK 18(17Q12) WILD-TYPE" "AMP PEAK 18(17Q12) WILD-TYPE" 
D17V7, continuous
D17V8, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED      5    0
  AMP PEAK 18(17Q12) WILD-TYPE   15    9
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  M0                          5                           15
  MX                          0                            9
D17V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(17Q12) MUTATED      2    3
  AMP PEAK 18(17Q12) WILD-TYPE   17    8
    clus
vv   AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  N0                          2                           17
  N1                          3                            8
D17V10, continuous
D17V11, continuous

Clustering(18) Variable = Amp Peak 19(17q25.1) mutation analysis
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(17Q25.1) MUTATED    7  2
  AMP PEAK 19(17Q25.1) WILD-TYPE 20  4
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                             9                             24 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                             2                              4 
$`AMP PEAK 19(17Q25.1) MUTATED`
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
       53.13        35.61        36.76         6.02         1.74         1.32 
TCGA-EX-A3L1 TCGA-FU-A3HY TCGA-FU-A3NI 
        6.94         0.07         1.45 

$`AMP PEAK 19(17Q25.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MK 
       49.48        30.41       177.04         5.46        67.46         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
       40.93        78.31        70.85        42.38         2.66        69.93 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-FU-A23K 
       95.08         0.26         0.82         0.62         5.85         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.22         0.99         2.17         1.02        25.41         5.52 

  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                          0.07                           0.26 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                         53.13                         177.04 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                         6.020                          5.685 
[1] "0.1 - 53.1 (6.0)"  "0.3 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
  "AMP PEAK 19(17Q25.1) MUTATED"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"AMP PEAK 19(17Q25.1) WILD-TYPE"   "AMP PEAK 19(17Q25.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "AMP PEAK 19(17Q25.1) MUTATED" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 19(17Q25.1) WILD-TYPE" 
[1] "hr=" "2.6"
D18V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 19(17Q25.1) MUTATED                                  6
  AMP PEAK 19(17Q25.1) WILD-TYPE                               21
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 19(17Q25.1) MUTATED                                     0
  AMP PEAK 19(17Q25.1) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  AMP PEAK 19(17Q25.1) MUTATED                         4
  AMP PEAK 19(17Q25.1) WILD-TYPE                       2
D18V3, multiclass
                                     clus
vv                                    AMP PEAK 19(17Q25.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        4
                                     clus
vv                                    AMP PEAK 19(17Q25.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          2
D18V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.1) MUTATED      3    7
  AMP PEAK 19(17Q25.1) WILD-TYPE    7   17
     clus
vv    AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  NO                             3                              7
  YES                            7                             17
D18V5, continuous
D18V6, continuous
[1] "Remove cluster labels:"       "AMP PEAK 19(17Q25.1) MUTATED"
clus
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                             2                              3 
                    TCGA-BI-A0VR                     TCGA-FU-A2QG 
"AMP PEAK 19(17Q25.1) WILD-TYPE" "AMP PEAK 19(17Q25.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"AMP PEAK 19(17Q25.1) WILD-TYPE" 
D18V7, continuous
D18V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.1) MUTATED      6    3
  AMP PEAK 19(17Q25.1) WILD-TYPE   14    6
    clus
vv   AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  M0                            6                             14
  MX                            3                              6
D18V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(17Q25.1) MUTATED      4    5
  AMP PEAK 19(17Q25.1) WILD-TYPE   15    6
    clus
vv   AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  N0                            4                             15
  N1                            5                              6
D18V10, continuous
D18V11, continuous

Clustering(19) Variable = Amp Peak 20(19q13.31) mutation analysis
D19V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 20(19Q13.31) MUTATED    8  3
  AMP PEAK 20(19Q13.31) WILD-TYPE 19  3
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                             11                              22 
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                              3                               3 
$`AMP PEAK 20(19Q13.31) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DS-A0VL 
        5.46        53.13        35.61         2.43        78.31         2.66 
TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-FU-A23L TCGA-FU-A3NI TCGA-HM-A3JK 
        6.02         1.32         1.22         1.45         5.52 

$`AMP PEAK 20(19Q13.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DR-A0ZL 
       49.48        30.41       177.04        67.46        40.93        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ 
       42.38        36.76        69.93        95.08         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG 
        0.82         0.62         5.85         6.94         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-HG-A2PA 
        2.17         0.07         1.02        25.41 

  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                           1.22                            0.07 
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                          78.31                          177.04 
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                          5.460                          16.175 
[1] "1.2 - 78.3 (5.5)"   "0.1 - 177.0 (16.2)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.31) MUTATED"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 20(19Q13.31) MUTATED" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 20(19Q13.31) MUTATED" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.31) MUTATED"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 20(19Q13.31) MUTATED" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 20(19Q13.31) MUTATED" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 20(19Q13.31) MUTATED"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 20(19Q13.31) MUTATED" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"AMP PEAK 20(19Q13.31) WILD-TYPE"   "AMP PEAK 20(19Q13.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"AMP PEAK 20(19Q13.31) WILD-TYPE" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 20(19Q13.31) MUTATED" "AMP PEAK 20(19Q13.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "AMP PEAK 20(19Q13.31) MUTATED" 
[1] "hr=" "3.1"
D19V2, continuous
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 20(19Q13.31) MUTATED                                  8
  AMP PEAK 20(19Q13.31) WILD-TYPE                               19
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 20(19Q13.31) MUTATED                                     0
  AMP PEAK 20(19Q13.31) WILD-TYPE                                   1
                                 vv
clus                              SQUAMOUS CELL CARCINOMA
  AMP PEAK 20(19Q13.31) MUTATED                         3
  AMP PEAK 20(19Q13.31) WILD-TYPE                       3
D19V3, multiclass
                                     clus
vv                                    AMP PEAK 20(19Q13.31) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                8
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             0
  SQUAMOUS CELL CARCINOMA                                         3
                                     clus
vv                                    AMP PEAK 20(19Q13.31) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                 19
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                               1
  SQUAMOUS CELL CARCINOMA                                           3
D19V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.31) MUTATED      7    4
  AMP PEAK 20(19Q13.31) WILD-TYPE    3   20
     clus
vv    AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  NO                              7                               3
  YES                             4                              20
D19V5, continuous
D19V6, continuous
[1] "Remove cluster labels:"          "AMP PEAK 20(19Q13.31) WILD-TYPE"
clus
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                              3                               2 
                   TCGA-C5-A1MF                    TCGA-DS-A3LQ 
"AMP PEAK 20(19Q13.31) MUTATED" "AMP PEAK 20(19Q13.31) MUTATED" 
                   TCGA-HM-A3JK 
"AMP PEAK 20(19Q13.31) MUTATED" 
D19V7, continuous
D19V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.31) MUTATED      5    4
  AMP PEAK 20(19Q13.31) WILD-TYPE   15    5
    clus
vv   AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  M0                             5                              15
  MX                             4                               5
D19V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 20(19Q13.31) MUTATED      5    4
  AMP PEAK 20(19Q13.31) WILD-TYPE   14    7
    clus
vv   AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  N0                             5                              14
  N1                             4                               7
D19V10, continuous
D19V11, continuous

Clustering(20) Variable = Amp Peak 21(20q11.21) mutation analysis
D20V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 21(20Q11.21) MUTATED   14  4
  AMP PEAK 21(20Q11.21) WILD-TYPE 13  2
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             18                              15 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                              4                               2 
$`AMP PEAK 21(20Q11.21) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK 
       49.48        30.41        35.61         2.43        40.93        36.76 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-FU-A23K 
        6.02         0.26         1.74         1.32         0.82         1.22 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        1.22         2.17         0.07         1.45        25.41         5.52 

$`AMP PEAK 21(20Q11.21) WILD-TYPE`
TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A2LY TCGA-DR-A0ZL 
      177.04         5.46        67.46        53.13        78.31        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A3HT TCGA-EX-A1H5 
       42.38         2.66        69.93        95.08         0.62         5.85 
TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3HZ 
        6.94         0.99         1.02 

  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                           0.07                            0.62 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                          49.48                          177.04 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                           2.30                           42.38 
[1] "0.1 - 49.5 (2.3)"   "0.6 - 177.0 (42.4)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"AMP PEAK 21(20Q11.21) WILD-TYPE" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"AMP PEAK 21(20Q11.21) WILD-TYPE"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
  "AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "AMP PEAK 21(20Q11.21) MUTATED"   "AMP PEAK 21(20Q11.21) MUTATED" 
                     TCGA-HM-A3JK 
  "AMP PEAK 21(20Q11.21) MUTATED" 
[1] "hr=" "8.8"
D20V2, continuous
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 21(20Q11.21) MUTATED                                 14
  AMP PEAK 21(20Q11.21) WILD-TYPE                               13
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 21(20Q11.21) MUTATED                                     1
  AMP PEAK 21(20Q11.21) WILD-TYPE                                   0
                                 vv
clus                              SQUAMOUS CELL CARCINOMA
  AMP PEAK 21(20Q11.21) MUTATED                         4
  AMP PEAK 21(20Q11.21) WILD-TYPE                       2
D20V3, multiclass
                                     clus
vv                                    AMP PEAK 21(20Q11.21) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               14
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         4
                                     clus
vv                                    AMP PEAK 21(20Q11.21) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                 13
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                               0
  SQUAMOUS CELL CARCINOMA                                           2
D20V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED      5   14
  AMP PEAK 21(20Q11.21) WILD-TYPE    5   10
     clus
vv    AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  NO                              5                               5
  YES                            14                              10
D20V5, continuous
D20V6, continuous
[1] "Remove cluster labels:"          "AMP PEAK 21(20Q11.21) WILD-TYPE"
clus
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                              3                               2 
                   TCGA-BI-A0VR                    TCGA-DS-A3LQ 
"AMP PEAK 21(20Q11.21) MUTATED" "AMP PEAK 21(20Q11.21) MUTATED" 
                   TCGA-HM-A3JK 
"AMP PEAK 21(20Q11.21) MUTATED" 
D20V7, continuous
D20V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED     10    6
  AMP PEAK 21(20Q11.21) WILD-TYPE   10    3
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  M0                            10                              10
  MX                             6                               3
D20V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 21(20Q11.21) MUTATED      8    8
  AMP PEAK 21(20Q11.21) WILD-TYPE   11    3
    clus
vv   AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  N0                             8                              11
  N1                             8                               3
D20V10, continuous
D20V11, continuous

Clustering(21) Variable = Amp Peak 22(Xq28) mutation analysis
D21V1, survival
                             sevent
clus2                          0  1
  AMP PEAK 22(XQ28) MUTATED    7  0
  AMP PEAK 22(XQ28) WILD-TYPE 20  6
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          7                          26 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          0                           6 
$`AMP PEAK 22(XQ28) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1MF TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-FU-A23L 
       30.41       177.04        53.13         6.02         1.74         1.22 
TCGA-FU-A3NI 
        1.45 

$`AMP PEAK 22(XQ28) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN 
       49.48         5.46        67.46        35.61         2.43        40.93 
TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       78.31        70.85        42.38        36.76         2.66        69.93 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 
       95.08         0.26         1.32         0.82         0.62         5.85 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.94         1.22         0.99         2.17         0.07         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                       1.22                        0.07 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                     177.04                       95.08 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                      6.020                       5.685 
[1] "1.2 - 177.0 (6.0)" "0.1 - 95.1 (5.7)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"AMP PEAK 22(XQ28) WILD-TYPE"   "AMP PEAK 22(XQ28) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "AMP PEAK 22(XQ28) MUTATED" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" 
[1] "hr="     "2.5e+08"
D21V2, continuous
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  AMP PEAK 22(XQ28) MUTATED                                  5
  AMP PEAK 22(XQ28) WILD-TYPE                               22
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  AMP PEAK 22(XQ28) MUTATED                                     0
  AMP PEAK 22(XQ28) WILD-TYPE                                   1
                             vv
clus                          SQUAMOUS CELL CARCINOMA
  AMP PEAK 22(XQ28) MUTATED                         2
  AMP PEAK 22(XQ28) WILD-TYPE                       4
D21V3, multiclass
                                     clus
vv                                    AMP PEAK 22(XQ28) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                            5
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                         0
  SQUAMOUS CELL CARCINOMA                                     2
                                     clus
vv                                    AMP PEAK 22(XQ28) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                             22
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       4
D21V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) MUTATED      2    5
  AMP PEAK 22(XQ28) WILD-TYPE    8   19
     clus
vv    AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  NO                          2                           8
  YES                         5                          19
D21V5, continuous
[1] "Remove cluster labels:"    "AMP PEAK 22(XQ28) MUTATED"
clus
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          1                           9 
                 TCGA-BI-A0VR                  TCGA-C5-A1BN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MN 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-EX-A1H5 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-FU-A3HY 
"AMP PEAK 22(XQ28) WILD-TYPE" 
D21V6, continuous
[1] "Remove cluster labels:"    "AMP PEAK 22(XQ28) MUTATED"
clus
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                          2                           3 
                 TCGA-BI-A0VR                  TCGA-FU-A2QG 
"AMP PEAK 22(XQ28) WILD-TYPE" "AMP PEAK 22(XQ28) WILD-TYPE" 
                 TCGA-HM-A3JK 
"AMP PEAK 22(XQ28) WILD-TYPE" 
D21V7, continuous
D21V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) MUTATED      3    4
  AMP PEAK 22(XQ28) WILD-TYPE   17    5
    clus
vv   AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  M0                         3                          17
  MX                         4                           5
D21V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 22(XQ28) MUTATED      5    2
  AMP PEAK 22(XQ28) WILD-TYPE   14    9
    clus
vv   AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  N0                         5                          14
  N1                         2                           9
D21V10, continuous
D21V11, continuous

Clustering(22) Variable = Del Peak  1(1p36.22) mutation analysis
D22V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.22) MUTATED    4  1
  DEL PEAK  1(1P36.22) WILD-TYPE 23  5
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             5                             28 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             1                              5 
$`DEL PEAK  1(1P36.22) MUTATED`
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-DS-A0VM TCGA-EA-A3HR TCGA-FU-A3EO 
       53.13        35.61        69.93         1.32         2.17 

$`DEL PEAK  1(1P36.22) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MK 
       49.48        30.41       177.04         5.46        67.46         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       95.08         6.02         0.26         1.74         0.82         0.62 
TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY 
        5.85         6.94         1.22         1.22         0.99         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02         1.45        25.41         5.52 

  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                          1.32                           0.07 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                         69.93                         177.04 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                        35.610                          5.685 
[1] "1.3 - 69.9 (35.6)" "0.1 - 177.0 (5.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK  1(1P36.22) MUTATED" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK  1(1P36.22) WILD-TYPE"   "DEL PEAK  1(1P36.22) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK  1(1P36.22) WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  1(1P36.22) MUTATED                                  5
  DEL PEAK  1(1P36.22) WILD-TYPE                               22
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  1(1P36.22) MUTATED                                     1
  DEL PEAK  1(1P36.22) WILD-TYPE                                   0
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK  1(1P36.22) MUTATED                         0
  DEL PEAK  1(1P36.22) WILD-TYPE                       6
D22V3, multiclass
                                     clus
vv                                    DEL PEAK  1(1P36.22) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               5
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            1
  SQUAMOUS CELL CARCINOMA                                        0
                                     clus
vv                                    DEL PEAK  1(1P36.22) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                22
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              0
  SQUAMOUS CELL CARCINOMA                                          6
D22V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) MUTATED      2    4
  DEL PEAK  1(1P36.22) WILD-TYPE    8   20
     clus
vv    DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  NO                             2                              8
  YES                            4                             20
D22V5, continuous
D22V6, continuous
[1] "Remove cluster labels:"       "DEL PEAK  1(1P36.22) MUTATED"
clus
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                             1                              4 
                    TCGA-BI-A0VR                     TCGA-DS-A3LQ 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-HM-A3JK 
"DEL PEAK  1(1P36.22) WILD-TYPE" "DEL PEAK  1(1P36.22) WILD-TYPE" 
D22V7, continuous
D22V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) MUTATED      3    2
  DEL PEAK  1(1P36.22) WILD-TYPE   17    7
    clus
vv   DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  M0                            3                             17
  MX                            2                              7
D22V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.22) MUTATED      3    2
  DEL PEAK  1(1P36.22) WILD-TYPE   16    9
    clus
vv   DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  N0                            3                             16
  N1                            2                              9
D22V10, continuous
D22V11, continuous

Clustering(23) Variable = Del Peak  2(2q22.1) mutation analysis
D23V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(2Q22.1) MUTATED    3  1
  DEL PEAK  2(2Q22.1) WILD-TYPE 24  5
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            4                            29 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            1                             5 
$`DEL PEAK  2(2Q22.1) MUTATED`
TCGA-C5-A1BN TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HR 
        5.46        95.08         6.02         1.32 

$`DEL PEAK  2(2Q22.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41       177.04        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
        2.66        69.93         0.26         1.74         0.82         0.62 
TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        5.85         6.94         1.22         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        0.07         1.02         1.45        25.41         5.52 

  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         1.32                          0.07 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                        95.08                        177.04 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         5.74                          5.85 
[1] "1.3 - 95.1 (5.7)"  "0.1 - 177.0 (5.8)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
[1] "hr=" "1.4"
D23V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  2(2Q22.1) MUTATED                                  3
  DEL PEAK  2(2Q22.1) WILD-TYPE                               24
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  2(2Q22.1) MUTATED                                     0
  DEL PEAK  2(2Q22.1) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  DEL PEAK  2(2Q22.1) MUTATED                         1
  DEL PEAK  2(2Q22.1) WILD-TYPE                       5
D23V3, multiclass
                                     clus
vv                                    DEL PEAK  2(2Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              3
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       1
                                     clus
vv                                    DEL PEAK  2(2Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               24
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         5
D23V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      3    1
  DEL PEAK  2(2Q22.1) WILD-TYPE    7   23
     clus
vv    DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  NO                            3                             7
  YES                           1                            23
D23V5, continuous
[1] "Remove cluster labels:"      "DEL PEAK  2(2Q22.1) MUTATED"
clus
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            1                             9 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MN 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZM                    TCGA-EX-A1H5 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY 
"DEL PEAK  2(2Q22.1) WILD-TYPE" 
D23V6, continuous
[1] "Remove cluster labels:"      "DEL PEAK  2(2Q22.1) MUTATED"
clus
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            1                             4 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-HM-A3JK 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
D23V7, continuous
D23V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      3    0
  DEL PEAK  2(2Q22.1) WILD-TYPE   17    9
    clus
vv   DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  M0                           3                            17
  MX                           0                             9
D23V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      2    1
  DEL PEAK  2(2Q22.1) WILD-TYPE   17   10
    clus
vv   DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  N0                           2                            17
  N1                           1                            10
D23V10, continuous
D23V11, continuous

Clustering(24) Variable = Del Peak  3(2q37.1) mutation analysis
D24V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2Q37.1) MUTATED   12  1
  DEL PEAK  3(2Q37.1) WILD-TYPE 15  5
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           13                            20 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                            1                             5 
$`DEL PEAK  3(2Q37.1) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VL 
       30.41       177.04         5.46        78.31        70.85         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HR TCGA-FU-A2QG TCGA-FU-A3HY 
       69.93        95.08         0.26         1.32         0.99         0.07 
TCGA-FU-A3NI 
        1.45 

$`DEL PEAK  3(2Q37.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN 
       49.48        67.46        53.13        35.61         2.43        40.93 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       42.38        36.76         6.02         1.74         0.82         0.62 
TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ 
        5.85         6.94         1.22         1.22         2.17         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                         0.07                          0.62 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                       177.04                         67.46 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                        5.460                         5.935 
[1] "0.1 - 177.0 (5.5)" "0.6 - 67.5 (5.9)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  3(2Q37.1) MUTATED"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  3(2Q37.1) WILD-TYPE"   "DEL PEAK  3(2Q37.1) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  3(2Q37.1) MUTATED" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" 
[1] "hr=" "6.1"
D24V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  3(2Q37.1) MUTATED                                 12
  DEL PEAK  3(2Q37.1) WILD-TYPE                               15
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  3(2Q37.1) MUTATED                                     0
  DEL PEAK  3(2Q37.1) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  DEL PEAK  3(2Q37.1) MUTATED                         2
  DEL PEAK  3(2Q37.1) WILD-TYPE                       4
D24V3, multiclass
                                     clus
vv                                    DEL PEAK  3(2Q37.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                             12
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       2
                                     clus
vv                                    DEL PEAK  3(2Q37.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               15
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         4
D24V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED      3   11
  DEL PEAK  3(2Q37.1) WILD-TYPE    7   13
     clus
vv    DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  NO                            3                             7
  YES                          11                            13
D24V5, continuous
D24V6, continuous
[1] "Remove cluster labels:"      "DEL PEAK  3(2Q37.1) MUTATED"
clus
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                            1                             4 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-HM-A3JK 
"DEL PEAK  3(2Q37.1) WILD-TYPE" "DEL PEAK  3(2Q37.1) WILD-TYPE" 
D24V7, continuous
D24V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED      8    3
  DEL PEAK  3(2Q37.1) WILD-TYPE   12    6
    clus
vv   DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  M0                           8                            12
  MX                           3                             6
D24V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.1) MUTATED      9    3
  DEL PEAK  3(2Q37.1) WILD-TYPE   10    8
    clus
vv   DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  N0                           9                            10
  N1                           3                             8
D24V10, continuous
D24V11, continuous

Clustering(25) Variable = Del Peak  4(3p11.2) mutation analysis
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(3P11.2) MUTATED   12  4
  DEL PEAK  4(3P11.2) WILD-TYPE 15  2
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                           16                            17 
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                            4                             2 
$`DEL PEAK  4(3P11.2) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL 
       49.48         5.46        53.13        35.61        40.93        70.85 
TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EX-A1H5 
       36.76        69.93        95.08         0.26         0.82         5.85 
TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA 
        1.22         0.07         1.45        25.41 

$`DEL PEAK  4(3P11.2) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM 
       30.41       177.04        67.46         2.43        78.31        42.38 
TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HT TCGA-EX-A3L1 
        2.66         6.02         1.74         1.32         0.62         6.94 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-HM-A3JK 
        1.22         0.99         2.17         1.02         5.52 

  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                         0.07                          0.62 
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                        95.08                        177.04 
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                        30.51                          2.66 
[1] "0.1 - 95.1 (30.5)" "0.6 - 177.0 (2.7)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P11.2) MUTATED"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  4(3P11.2) WILD-TYPE" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P11.2) WILD-TYPE" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  4(3P11.2) MUTATED"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-HM-A3JK 
"DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P11.2) MUTATED"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  4(3P11.2) WILD-TYPE" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P11.2) WILD-TYPE" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  4(3P11.2) MUTATED"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-HM-A3JK 
"DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  4(3P11.2) MUTATED"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  4(3P11.2) WILD-TYPE" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  4(3P11.2) WILD-TYPE"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  4(3P11.2) WILD-TYPE" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  4(3P11.2) MUTATED" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  4(3P11.2) MUTATED"   "DEL PEAK  4(3P11.2) MUTATED" 
                   TCGA-HM-A3JK 
"DEL PEAK  4(3P11.2) WILD-TYPE" 
[1] "hr=" "1.4"
D25V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  4(3P11.2) MUTATED                                 15
  DEL PEAK  4(3P11.2) WILD-TYPE                               12
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  4(3P11.2) MUTATED                                     0
  DEL PEAK  4(3P11.2) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  DEL PEAK  4(3P11.2) MUTATED                         2
  DEL PEAK  4(3P11.2) WILD-TYPE                       4
D25V3, multiclass
                                     clus
vv                                    DEL PEAK  4(3P11.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                             15
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       2
                                     clus
vv                                    DEL PEAK  4(3P11.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               12
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         4
D25V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P11.2) MUTATED      6   11
  DEL PEAK  4(3P11.2) WILD-TYPE    4   13
     clus
vv    DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  NO                            6                             4
  YES                          11                            13
D25V5, continuous
D25V6, continuous
[1] "Remove cluster labels:"      "DEL PEAK  4(3P11.2) MUTATED"
clus
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                            2                             3 
                   TCGA-DS-A3LQ                    TCGA-FU-A2QG 
"DEL PEAK  4(3P11.2) WILD-TYPE" "DEL PEAK  4(3P11.2) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  4(3P11.2) WILD-TYPE" 
D25V7, continuous
D25V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P11.2) MUTATED      9    5
  DEL PEAK  4(3P11.2) WILD-TYPE   11    4
    clus
vv   DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  M0                           9                            11
  MX                           5                             4
D25V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(3P11.2) MUTATED      7    7
  DEL PEAK  4(3P11.2) WILD-TYPE   12    4
    clus
vv   DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  N0                           7                            12
  N1                           7                             4
D25V10, continuous
D25V11, continuous

Clustering(26) Variable = Del Peak  5(4q22.1) mutation analysis
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(4Q22.1) MUTATED    6  2
  DEL PEAK  5(4Q22.1) WILD-TYPE 21  4
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                            8                            25 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                            2                             4 
$`DEL PEAK  5(4Q22.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-EA-A1QT TCGA-EX-A1H5 
       49.48         5.46        35.61        70.85         0.26         5.85 
TCGA-EX-A3L1 TCGA-FU-A3NI 
        6.94         1.45 

$`DEL PEAK  5(4Q22.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN 
       30.41       177.04        67.46        53.13         2.43        40.93 
TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       78.31        42.38        36.76         2.66        69.93        95.08 
TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-FU-A23K 
        6.02         1.74         1.32         0.82         0.62         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-HG-A2PA 
        1.22         0.99         2.17         0.07         1.02        25.41 
TCGA-HM-A3JK 
        5.52 

  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                         0.26                          0.07 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                        70.85                        177.04 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                        6.395                         5.520 
[1] "0.3 - 70.8 (6.4)"  "0.1 - 177.0 (5.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  5(4Q22.1) WILD-TYPE"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  5(4Q22.1) MUTATED"   "DEL PEAK  5(4Q22.1) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  5(4Q22.1) MUTATED" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  5(4Q22.1) WILD-TYPE" 
[1] "hr=" "1.7"
D26V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  5(4Q22.1) MUTATED                                  6
  DEL PEAK  5(4Q22.1) WILD-TYPE                               21
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  5(4Q22.1) MUTATED                                     0
  DEL PEAK  5(4Q22.1) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  DEL PEAK  5(4Q22.1) MUTATED                         2
  DEL PEAK  5(4Q22.1) WILD-TYPE                       4
D26V3, multiclass
                                     clus
vv                                    DEL PEAK  5(4Q22.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       2
                                     clus
vv                                    DEL PEAK  5(4Q22.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         4
D26V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4Q22.1) MUTATED      3    5
  DEL PEAK  5(4Q22.1) WILD-TYPE    7   19
     clus
vv    DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  NO                            3                             7
  YES                           5                            19
D26V5, continuous
D26V6, continuous
[1] "Remove cluster labels:"      "DEL PEAK  5(4Q22.1) MUTATED"
clus
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                            1                             4 
                   TCGA-C5-A1MF                    TCGA-DS-A3LQ 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-HM-A3JK 
"DEL PEAK  5(4Q22.1) WILD-TYPE" "DEL PEAK  5(4Q22.1) WILD-TYPE" 
D26V7, continuous
D26V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4Q22.1) MUTATED      5    2
  DEL PEAK  5(4Q22.1) WILD-TYPE   15    7
    clus
vv   DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  M0                           5                            15
  MX                           2                             7
D26V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(4Q22.1) MUTATED      3    4
  DEL PEAK  5(4Q22.1) WILD-TYPE   16    7
    clus
vv   DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  N0                           3                            16
  N1                           4                             7
D26V10, continuous
D26V11, continuous

Clustering(27) Variable = Del Peak  6(4q35.2) mutation analysis
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4Q35.2) MUTATED    8  4
  DEL PEAK  6(4Q35.2) WILD-TYPE 19  2
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           12                            21 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                            4                             2 
$`DEL PEAK  6(4Q35.2) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL 
       30.41         5.46        67.46        35.61        40.93        70.85 
TCGA-EA-A1QT TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3NI 
        0.26         0.62         5.85         6.94         0.99         1.45 

$`DEL PEAK  6(4Q35.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM 
       49.48       177.04        53.13         2.43        78.31        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ 
       36.76         2.66        69.93        95.08         6.02         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY 
        1.32         0.82         1.22         1.22         2.17         0.07 
TCGA-FU-A3HZ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02        25.41         5.52 

  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                         0.26                          0.07 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                        70.85                        177.04 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                        6.395                         5.520 
[1] "0.3 - 70.8 (6.4)"  "0.1 - 177.0 (5.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  6(4Q35.2) WILD-TYPE"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK  6(4Q35.2) MUTATED"   "DEL PEAK  6(4Q35.2) MUTATED" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK  6(4Q35.2) MUTATED" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK  6(4Q35.2) WILD-TYPE" 
[1] "hr=" "3.9"
D27V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  6(4Q35.2) MUTATED                                  9
  DEL PEAK  6(4Q35.2) WILD-TYPE                               18
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  6(4Q35.2) MUTATED                                     0
  DEL PEAK  6(4Q35.2) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  DEL PEAK  6(4Q35.2) MUTATED                         3
  DEL PEAK  6(4Q35.2) WILD-TYPE                       3
D27V3, multiclass
                                     clus
vv                                    DEL PEAK  6(4Q35.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              9
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       3
                                     clus
vv                                    DEL PEAK  6(4Q35.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               18
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         3
D27V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.2) MUTATED      4    8
  DEL PEAK  6(4Q35.2) WILD-TYPE    6   16
     clus
vv    DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  NO                            4                             6
  YES                           8                            16
D27V5, continuous
D27V6, continuous
[1] "Remove cluster labels:"      "DEL PEAK  6(4Q35.2) MUTATED"
clus
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                            1                             4 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-HM-A3JK 
"DEL PEAK  6(4Q35.2) WILD-TYPE" "DEL PEAK  6(4Q35.2) WILD-TYPE" 
D27V7, continuous
D27V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.2) MUTATED      7    2
  DEL PEAK  6(4Q35.2) WILD-TYPE   13    7
    clus
vv   DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  M0                           7                            13
  MX                           2                             7
D27V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.2) MUTATED      7    3
  DEL PEAK  6(4Q35.2) WILD-TYPE   12    8
    clus
vv   DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  N0                           7                            12
  N1                           3                             8
D27V10, continuous
D27V11, continuous

Clustering(28) Variable = Del Peak  7(5q15) mutation analysis
D28V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  7(5Q15) MUTATED   12  4
  DEL PEAK  7(5Q15) WILD-TYPE 15  2
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         16                          17 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          4                           2 
$`DEL PEAK  7(5Q15) MUTATED`
TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VK 
      177.04         5.46        35.61        40.93        70.85        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EX-A1H5 TCGA-FU-A23L 
        2.66        69.93         0.26         1.32         5.85         1.22 
TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HG-A2PA 
        0.99         0.07         1.45        25.41 

$`DEL PEAK  7(5Q15) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        30.41        67.46        53.13         2.43        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       42.38        95.08         6.02         1.74         0.82         0.62 
TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-HM-A3JK 
        6.94         1.22         2.17         1.02         5.52 

  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                       0.07                        0.62 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                     177.04                       95.08 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                      5.655                       6.020 
[1] "0.1 - 177.0 (5.7)" "0.6 - 95.1 (6.0)" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-HM-A3JK 
"DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-HM-A3JK 
"DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK  7(5Q15) WILD-TYPE"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK  7(5Q15) MUTATED" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
  "DEL PEAK  7(5Q15) MUTATED"   "DEL PEAK  7(5Q15) MUTATED" 
                 TCGA-HM-A3JK 
"DEL PEAK  7(5Q15) WILD-TYPE" 
[1] "hr=" "2.3"
D28V2, continuous
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  7(5Q15) MUTATED                                 14
  DEL PEAK  7(5Q15) WILD-TYPE                               13
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  7(5Q15) MUTATED                                     0
  DEL PEAK  7(5Q15) WILD-TYPE                                   1
                             vv
clus                          SQUAMOUS CELL CARCINOMA
  DEL PEAK  7(5Q15) MUTATED                         2
  DEL PEAK  7(5Q15) WILD-TYPE                       4
D28V3, multiclass
                                     clus
vv                                    DEL PEAK  7(5Q15) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                           14
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                         0
  SQUAMOUS CELL CARCINOMA                                     2
                                     clus
vv                                    DEL PEAK  7(5Q15) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                             13
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       4
D28V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(5Q15) MUTATED      4   12
  DEL PEAK  7(5Q15) WILD-TYPE    6   12
     clus
vv    DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  NO                          4                           6
  YES                        12                          12
D28V5, continuous
D28V6, continuous
[1] "Remove cluster labels:"    "DEL PEAK  7(5Q15) MUTATED"
clus
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                          1                           4 
                 TCGA-BI-A0VR                  TCGA-C5-A1MF 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-HM-A3JK 
"DEL PEAK  7(5Q15) WILD-TYPE" "DEL PEAK  7(5Q15) WILD-TYPE" 
D28V7, continuous
D28V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(5Q15) MUTATED      8    5
  DEL PEAK  7(5Q15) WILD-TYPE   12    4
    clus
vv   DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  M0                         8                          12
  MX                         5                           4
D28V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  7(5Q15) MUTATED      8    6
  DEL PEAK  7(5Q15) WILD-TYPE   11    5
    clus
vv   DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  N0                         8                          11
  N1                         6                           5
D28V10, continuous
D28V11, continuous

Clustering(29) Variable = Del Peak  8(6p24.3) mutation analysis
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(6P24.3) MUTATED    4  1
  DEL PEAK  8(6P24.3) WILD-TYPE 23  5
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                            5                            28 
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                            1                             5 
$`DEL PEAK  8(6P24.3) MUTATED`
TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-FU-A3HY TCGA-HG-A2PA 
       36.76        69.93         6.02         0.07        25.41 

$`DEL PEAK  8(6P24.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        2.66        95.08         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
        0.62         5.85         6.94         1.22         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HM-A3JK 
        2.17         1.02         1.45         5.52 

  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                         0.07                          0.26 
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                        69.93                        177.04 
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                        25.41                          5.49 
[1] "0.1 - 69.9 (25.4)" "0.3 - 177.0 (5.5)"
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"DEL PEAK  8(6P24.3) WILD-TYPE"   "DEL PEAK  8(6P24.3) MUTATED" 
                   TCGA-HM-A3JK 
"DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"DEL PEAK  8(6P24.3) WILD-TYPE"   "DEL PEAK  8(6P24.3) MUTATED" 
                   TCGA-HM-A3JK 
"DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK  8(6P24.3) MUTATED" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
"DEL PEAK  8(6P24.3) WILD-TYPE"   "DEL PEAK  8(6P24.3) MUTATED" 
                   TCGA-HM-A3JK 
"DEL PEAK  8(6P24.3) WILD-TYPE" 
[1] "hr=" "1"  
D29V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK  8(6P24.3) MUTATED                                  4
  DEL PEAK  8(6P24.3) WILD-TYPE                               23
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK  8(6P24.3) MUTATED                                     0
  DEL PEAK  8(6P24.3) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  DEL PEAK  8(6P24.3) MUTATED                         2
  DEL PEAK  8(6P24.3) WILD-TYPE                       4
D29V3, multiclass
                                     clus
vv                                    DEL PEAK  8(6P24.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              4
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       2
                                     clus
vv                                    DEL PEAK  8(6P24.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               23
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         4
D29V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6P24.3) MUTATED      1    5
  DEL PEAK  8(6P24.3) WILD-TYPE    9   19
     clus
vv    DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  NO                            1                             9
  YES                           5                            19
D29V5, continuous
[1] "Remove cluster labels:"      "DEL PEAK  8(6P24.3) MUTATED"
clus
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                            1                             9 
                   TCGA-BI-A0VR                    TCGA-C5-A1BN 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MF                    TCGA-C5-A1MI 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-DR-A0ZM 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-FU-A2QG 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A3EO 
"DEL PEAK  8(6P24.3) WILD-TYPE" 
D29V6, continuous
[1] "Remove cluster labels:"      "DEL PEAK  8(6P24.3) MUTATED"
clus
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                            1                             4 
                   TCGA-BI-A0VR                    TCGA-C5-A1MF 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-HM-A3JK 
"DEL PEAK  8(6P24.3) WILD-TYPE" "DEL PEAK  8(6P24.3) WILD-TYPE" 
D29V7, continuous
D29V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6P24.3) MUTATED      4    1
  DEL PEAK  8(6P24.3) WILD-TYPE   16    8
    clus
vv   DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  M0                           4                            16
  MX                           1                             8
D29V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6P24.3) MUTATED      1    4
  DEL PEAK  8(6P24.3) WILD-TYPE   18    7
    clus
vv   DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  N0                           1                            18
  N1                           4                             7
D29V10, continuous
D29V11, continuous

Clustering(30) Variable = Del Peak 10(6q26) mutation analysis
D30V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 10(6Q26) MUTATED    6  1
  DEL PEAK 10(6Q26) WILD-TYPE 21  5
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                          7                          26 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                          1                           5 
$`DEL PEAK 10(6Q26) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1M5 TCGA-DS-A0VM TCGA-EA-A1QT TCGA-FU-A23L TCGA-FU-A3HY 
       49.48        67.46        69.93         0.26         1.22         0.07 
TCGA-HM-A3JK 
        5.52 

$`DEL PEAK 10(6Q26) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41       177.04         5.46        53.13        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       95.08         6.02         1.74         1.32         0.82         0.62 
TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
        5.85         6.94         1.22         0.99         2.17         1.02 
TCGA-FU-A3NI TCGA-HG-A2PA 
        1.45        25.41 

  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                       0.07                        0.62 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                      69.93                      177.04 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                      5.520                       5.935 
[1] "0.1 - 69.9 (5.5)"  "0.6 - 177.0 (5.9)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JK 
  "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JK 
  "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 10(6Q26) WILD-TYPE"   "DEL PEAK 10(6Q26) MUTATED" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
  "DEL PEAK 10(6Q26) MUTATED" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-HM-A3JK 
  "DEL PEAK 10(6Q26) MUTATED" 
[1] "hr=" "1.8"
D30V2, continuous
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 10(6Q26) MUTATED                                  6
  DEL PEAK 10(6Q26) WILD-TYPE                               21
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 10(6Q26) MUTATED                                     0
  DEL PEAK 10(6Q26) WILD-TYPE                                   1
                             vv
clus                          SQUAMOUS CELL CARCINOMA
  DEL PEAK 10(6Q26) MUTATED                         2
  DEL PEAK 10(6Q26) WILD-TYPE                       4
D30V3, multiclass
                                     clus
vv                                    DEL PEAK 10(6Q26) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                            6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                         0
  SQUAMOUS CELL CARCINOMA                                     2
                                     clus
vv                                    DEL PEAK 10(6Q26) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                             21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       4
D30V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q26) MUTATED      1    7
  DEL PEAK 10(6Q26) WILD-TYPE    9   17
     clus
vv    DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  NO                          1                           9
  YES                         7                          17
D30V5, continuous
[1] "Remove cluster labels:"    "DEL PEAK 10(6Q26) MUTATED"
clus
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                          2                           8 
                 TCGA-C5-A1BN                  TCGA-C5-A1MF 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MN 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-DR-A0ZM                  TCGA-EX-A1H5 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
D30V6, continuous
[1] "Remove cluster labels:"    "DEL PEAK 10(6Q26) MUTATED"
clus
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                          2                           3 
                 TCGA-C5-A1MF                  TCGA-DS-A3LQ 
"DEL PEAK 10(6Q26) WILD-TYPE" "DEL PEAK 10(6Q26) WILD-TYPE" 
                 TCGA-FU-A2QG 
"DEL PEAK 10(6Q26) WILD-TYPE" 
D30V7, continuous
D30V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q26) MUTATED      4    3
  DEL PEAK 10(6Q26) WILD-TYPE   16    6
    clus
vv   DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  M0                         4                          16
  MX                         3                           6
D30V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 10(6Q26) MUTATED      3    4
  DEL PEAK 10(6Q26) WILD-TYPE   16    7
    clus
vv   DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  N0                         3                          16
  N1                         4                           7
D30V10, continuous
D30V11, continuous

Clustering(31) Variable = Del Peak 11(7q34) mutation analysis
D31V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 11(7Q34) MUTATED    3  4
  DEL PEAK 11(7Q34) WILD-TYPE 24  2
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                          7                          26 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                          4                           2 
$`DEL PEAK 11(7Q34) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MN TCGA-EA-A3HT TCGA-EX-A1H5 
        5.46        67.46        35.61        40.93         0.62         5.85 
TCGA-FU-A2QG 
        0.99 

$`DEL PEAK 11(7Q34) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        30.41       177.04        53.13         2.43        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       70.85        42.38        36.76         2.66        69.93        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EX-A3L1 
        6.02         0.26         1.74         1.32         0.82         6.94 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         1.22         2.17         0.07         1.02         1.45 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                       0.62                        0.07 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                      67.46                      177.04 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                       5.85                        5.77 
[1] "0.6 - 67.5 (5.8)"  "0.1 - 177.0 (5.8)"
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JK 
"DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JK 
"DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-BI-A0VR                  TCGA-BI-A0VS 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1BK                  TCGA-C5-A1BN 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-C5-A1M5                  TCGA-C5-A1MF 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MI                  TCGA-C5-A1MK 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-C5-A1MN                  TCGA-C5-A2LY 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DR-A0ZL                  TCGA-DR-A0ZM 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VK                  TCGA-DS-A0VL 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A0VM                  TCGA-DS-A0VN 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-EA-A1QT 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HQ                  TCGA-EA-A3HR 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-EA-A3HS                  TCGA-EA-A3HT 
"DEL PEAK 11(7Q34) WILD-TYPE"   "DEL PEAK 11(7Q34) MUTATED" 
                 TCGA-EX-A1H5                  TCGA-EX-A3L1 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A23K                  TCGA-FU-A23L 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A2QG                  TCGA-FU-A3EO 
  "DEL PEAK 11(7Q34) MUTATED" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3HY                  TCGA-FU-A3HZ 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-FU-A3NI                  TCGA-HG-A2PA 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-HM-A3JK 
"DEL PEAK 11(7Q34) WILD-TYPE" 
[1] "hr=" "7.4"
D31V2, continuous
                             vv
clus                          CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 11(7Q34) MUTATED                                  6
  DEL PEAK 11(7Q34) WILD-TYPE                               21
                             vv
clus                          ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 11(7Q34) MUTATED                                     0
  DEL PEAK 11(7Q34) WILD-TYPE                                   1
                             vv
clus                          SQUAMOUS CELL CARCINOMA
  DEL PEAK 11(7Q34) MUTATED                         1
  DEL PEAK 11(7Q34) WILD-TYPE                       5
D31V3, multiclass
                                     clus
vv                                    DEL PEAK 11(7Q34) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                            6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                         0
  SQUAMOUS CELL CARCINOMA                                     1
                                     clus
vv                                    DEL PEAK 11(7Q34) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                             21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           1
  SQUAMOUS CELL CARCINOMA                                       5
D31V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(7Q34) MUTATED      4    3
  DEL PEAK 11(7Q34) WILD-TYPE    6   21
     clus
vv    DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  NO                          4                           6
  YES                         3                          21
D31V5, continuous
D31V6, continuous
[1] "Remove cluster labels:"    "DEL PEAK 11(7Q34) MUTATED"
clus
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                          1                           4 
                 TCGA-BI-A0VR                  TCGA-C5-A1MF 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
                 TCGA-DS-A3LQ                  TCGA-HM-A3JK 
"DEL PEAK 11(7Q34) WILD-TYPE" "DEL PEAK 11(7Q34) WILD-TYPE" 
D31V7, continuous
D31V8, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(7Q34) MUTATED      3    1
  DEL PEAK 11(7Q34) WILD-TYPE   17    8
    clus
vv   DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  M0                         3                          17
  MX                         1                           8
D31V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 11(7Q34) MUTATED      3    2
  DEL PEAK 11(7Q34) WILD-TYPE   16    9
    clus
vv   DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  N0                         3                          16
  N1                         2                           9
D31V10, continuous
D31V11, continuous

Clustering(32) Variable = Del Peak 12(10q23.31) mutation analysis
D32V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 12(10Q23.31) MUTATED    4  2
  DEL PEAK 12(10Q23.31) WILD-TYPE 23  4
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                              6                              27 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                              2                               4 
$`DEL PEAK 12(10Q23.31) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-DS-A0VK TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-HM-A3JK 
       30.41        35.61        36.76         5.85         0.99         5.52 

$`DEL PEAK 12(10Q23.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK 
       49.48       177.04         5.46        67.46        53.13         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
       40.93        78.31        70.85        42.38         2.66        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       95.08         6.02         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY 
        0.62         6.94         1.22         1.22         2.17         0.07 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA 
        1.02         1.45        25.41 

  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                           0.99                            0.07 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                          36.76                          177.04 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                          18.13                            5.46 
[1] "1.0 - 36.8 (18.1)" "0.1 - 177.0 (5.5)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 12(10Q23.31) WILD-TYPE"   "DEL PEAK 12(10Q23.31) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
  "DEL PEAK 12(10Q23.31) MUTATED" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
  "DEL PEAK 12(10Q23.31) MUTATED" 
[1] "hr=" "4.6"
D32V2, continuous
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 12(10Q23.31) MUTATED                                  6
  DEL PEAK 12(10Q23.31) WILD-TYPE                               21
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 12(10Q23.31) MUTATED                                     0
  DEL PEAK 12(10Q23.31) WILD-TYPE                                   1
                                 vv
clus                              SQUAMOUS CELL CARCINOMA
  DEL PEAK 12(10Q23.31) MUTATED                         1
  DEL PEAK 12(10Q23.31) WILD-TYPE                       5
D32V3, multiclass
                                     clus
vv                                    DEL PEAK 12(10Q23.31) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             0
  SQUAMOUS CELL CARCINOMA                                         1
                                     clus
vv                                    DEL PEAK 12(10Q23.31) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                 21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                               1
  SQUAMOUS CELL CARCINOMA                                           5
D32V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 12(10Q23.31) MUTATED      3    4
  DEL PEAK 12(10Q23.31) WILD-TYPE    7   20
     clus
vv    DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  NO                              3                               7
  YES                             4                              20
D32V5, continuous
D32V6, continuous
[1] "Remove cluster labels:"        "DEL PEAK 12(10Q23.31) MUTATED"
clus
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                              2                               3 
                     TCGA-BI-A0VR                      TCGA-C5-A1MF 
"DEL PEAK 12(10Q23.31) WILD-TYPE" "DEL PEAK 12(10Q23.31) WILD-TYPE" 
                     TCGA-DS-A3LQ 
"DEL PEAK 12(10Q23.31) WILD-TYPE" 
D32V7, continuous
D32V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 12(10Q23.31) MUTATED      3    2
  DEL PEAK 12(10Q23.31) WILD-TYPE   17    7
    clus
vv   DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  M0                             3                              17
  MX                             2                               7
D32V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 12(10Q23.31) MUTATED      2    4
  DEL PEAK 12(10Q23.31) WILD-TYPE   17    7
    clus
vv   DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  N0                             2                              17
  N1                             4                               7
D32V10, continuous
D32V11, continuous

Clustering(33) Variable = Del Peak 13(11q25) mutation analysis
D33V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 13(11Q25) MUTATED   17  5
  DEL PEAK 13(11Q25) WILD-TYPE 10  1
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                          22                           11 
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                           5                            1 
$`DEL PEAK 13(11Q25) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL 
       35.61         2.43        78.31        70.85        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EX-A1H5 
       69.93        95.08         6.02         0.26         1.32         5.85 
TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        6.94         1.22         0.07         1.45 

$`DEL PEAK 13(11Q25) WILD-TYPE`
TCGA-C5-A1MN TCGA-DR-A0ZM TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-FU-A23K 
       40.93        42.38         1.74         0.82         0.62         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-HG-A2PA TCGA-HM-A3JK 
        0.99         2.17         1.02        25.41         5.52 

  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                        0.07                         0.62 
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                      177.04                        42.38 
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                      18.675                        1.740 
[1] "0.1 - 177.0 (18.7)" "0.6 - 42.4 (1.7)"  
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"DEL PEAK 13(11Q25) WILD-TYPE" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 13(11Q25) WILD-TYPE" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"DEL PEAK 13(11Q25) WILD-TYPE" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 13(11Q25) WILD-TYPE" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"DEL PEAK 13(11Q25) WILD-TYPE" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
  "DEL PEAK 13(11Q25) MUTATED"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 13(11Q25) WILD-TYPE"   "DEL PEAK 13(11Q25) MUTATED" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 13(11Q25) WILD-TYPE" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
  "DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 13(11Q25) WILD-TYPE" 
[1] "hr=" "1.1"
D33V2, continuous
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 13(11Q25) MUTATED                                 19
  DEL PEAK 13(11Q25) WILD-TYPE                                8
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 13(11Q25) MUTATED                                     0
  DEL PEAK 13(11Q25) WILD-TYPE                                   1
                              vv
clus                           SQUAMOUS CELL CARCINOMA
  DEL PEAK 13(11Q25) MUTATED                         4
  DEL PEAK 13(11Q25) WILD-TYPE                       2
D33V3, multiclass
                                     clus
vv                                    DEL PEAK 13(11Q25) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                            19
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                          0
  SQUAMOUS CELL CARCINOMA                                      4
                                     clus
vv                                    DEL PEAK 13(11Q25) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               8
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            1
  SQUAMOUS CELL CARCINOMA                                        2
D33V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 13(11Q25) MUTATED      8   15
  DEL PEAK 13(11Q25) WILD-TYPE    2    9
     clus
vv    DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  NO                           8                            2
  YES                         15                            9
D33V5, continuous
D33V6, continuous
[1] "Remove cluster labels:"       "DEL PEAK 13(11Q25) WILD-TYPE"
clus
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                           3                            2 
                TCGA-BI-A0VR                 TCGA-C5-A1MF 
"DEL PEAK 13(11Q25) MUTATED" "DEL PEAK 13(11Q25) MUTATED" 
                TCGA-DS-A3LQ 
"DEL PEAK 13(11Q25) MUTATED" 
D33V7, continuous
D33V8, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 13(11Q25) MUTATED     14    6
  DEL PEAK 13(11Q25) WILD-TYPE    6    3
    clus
vv   DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  M0                         14                            6
  MX                          6                            3
D33V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 13(11Q25) MUTATED     12    8
  DEL PEAK 13(11Q25) WILD-TYPE    7    3
    clus
vv   DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  N0                         12                            7
  N1                          8                            3
D33V10, continuous
D33V11, continuous

Clustering(34) Variable = Del Peak 14(13q12.12) mutation analysis
D34V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 14(13Q12.12) MUTATED   10  2
  DEL PEAK 14(13Q12.12) WILD-TYPE 17  4
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                             12                              21 
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                              2                               4 
$`DEL PEAK 14(13Q12.12) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VM 
       49.48        30.41         5.46        35.61        70.85        69.93 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3NI TCGA-HG-A2PA 
       95.08         0.26         5.85         1.22         1.45        25.41 

$`DEL PEAK 14(13Q12.12) WILD-TYPE`
TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
      177.04        67.46        53.13         2.43        40.93        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
       42.38        36.76         2.66         6.02         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
        0.82         0.62         6.94         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-HM-A3JK 
        0.07         1.02         5.52 

  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                           0.26                            0.07 
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                          95.08                          177.04 
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                          27.91                            2.66 
[1] "0.3 - 95.1 (27.9)" "0.1 - 177.0 (2.7)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-HM-A3JK 
"DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-HM-A3JK 
"DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
  "DEL PEAK 14(13Q12.12) MUTATED" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 14(13Q12.12) WILD-TYPE"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
  "DEL PEAK 14(13Q12.12) MUTATED"   "DEL PEAK 14(13Q12.12) MUTATED" 
                     TCGA-HM-A3JK 
"DEL PEAK 14(13Q12.12) WILD-TYPE" 
[1] "hr=" "1.5"
D34V2, continuous
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 14(13Q12.12) MUTATED                                 12
  DEL PEAK 14(13Q12.12) WILD-TYPE                               15
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 14(13Q12.12) MUTATED                                     0
  DEL PEAK 14(13Q12.12) WILD-TYPE                                   1
                                 vv
clus                              SQUAMOUS CELL CARCINOMA
  DEL PEAK 14(13Q12.12) MUTATED                         1
  DEL PEAK 14(13Q12.12) WILD-TYPE                       5
D34V3, multiclass
                                     clus
vv                                    DEL PEAK 14(13Q12.12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               12
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             0
  SQUAMOUS CELL CARCINOMA                                         1
                                     clus
vv                                    DEL PEAK 14(13Q12.12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                 15
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                               1
  SQUAMOUS CELL CARCINOMA                                           5
D34V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(13Q12.12) MUTATED      4    9
  DEL PEAK 14(13Q12.12) WILD-TYPE    6   15
     clus
vv    DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  NO                              4                               6
  YES                             9                              15
D34V5, continuous
D34V6, continuous
[1] "Remove cluster labels:"        "DEL PEAK 14(13Q12.12) MUTATED"
clus
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                              1                               4 
                     TCGA-C5-A1MF                      TCGA-DS-A3LQ 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-HM-A3JK 
"DEL PEAK 14(13Q12.12) WILD-TYPE" "DEL PEAK 14(13Q12.12) WILD-TYPE" 
D34V7, continuous
D34V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(13Q12.12) MUTATED      8    3
  DEL PEAK 14(13Q12.12) WILD-TYPE   12    6
    clus
vv   DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  M0                             8                              12
  MX                             3                               6
D34V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(13Q12.12) MUTATED      6    5
  DEL PEAK 14(13Q12.12) WILD-TYPE   13    6
    clus
vv   DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  N0                             6                              13
  N1                             5                               6
D34V10, continuous
D34V11, continuous

Clustering(35) Variable = Del Peak 15(13q13.3) mutation analysis
D35V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 15(13Q13.3) MUTATED   10  2
  DEL PEAK 15(13Q13.3) WILD-TYPE 17  4
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                            12                             21 
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                             2                              4 
$`DEL PEAK 15(13Q13.3) MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1MI TCGA-DR-A0ZL TCGA-DS-A0VM 
       49.48        30.41         5.46        35.61        70.85        69.93 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3NI TCGA-HG-A2PA 
       95.08         0.26         5.85         1.22         1.45        25.41 

$`DEL PEAK 15(13Q13.3) WILD-TYPE`
TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY 
      177.04        67.46        53.13         2.43        40.93        78.31 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR 
       42.38        36.76         2.66         6.02         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
        0.82         0.62         6.94         1.22         0.99         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-HM-A3JK 
        0.07         1.02         5.52 

  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                          0.26                           0.07 
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                         27.91                           2.66 
[1] "0.3 - 95.1 (27.9)" "0.1 - 177.0 (2.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-HM-A3JK 
"DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-HM-A3JK 
"DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "DEL PEAK 15(13Q13.3) MUTATED" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 15(13Q13.3) WILD-TYPE"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "DEL PEAK 15(13Q13.3) MUTATED"   "DEL PEAK 15(13Q13.3) MUTATED" 
                    TCGA-HM-A3JK 
"DEL PEAK 15(13Q13.3) WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 15(13Q13.3) MUTATED                                 12
  DEL PEAK 15(13Q13.3) WILD-TYPE                               15
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 15(13Q13.3) MUTATED                                     0
  DEL PEAK 15(13Q13.3) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 15(13Q13.3) MUTATED                         1
  DEL PEAK 15(13Q13.3) WILD-TYPE                       5
D35V3, multiclass
                                     clus
vv                                    DEL PEAK 15(13Q13.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                              12
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        1
                                     clus
vv                                    DEL PEAK 15(13Q13.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                15
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          5
D35V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(13Q13.3) MUTATED      4    9
  DEL PEAK 15(13Q13.3) WILD-TYPE    6   15
     clus
vv    DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  NO                             4                              6
  YES                            9                             15
D35V5, continuous
D35V6, continuous
[1] "Remove cluster labels:"       "DEL PEAK 15(13Q13.3) MUTATED"
clus
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                             1                              4 
                    TCGA-C5-A1MF                     TCGA-DS-A3LQ 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-HM-A3JK 
"DEL PEAK 15(13Q13.3) WILD-TYPE" "DEL PEAK 15(13Q13.3) WILD-TYPE" 
D35V7, continuous
D35V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(13Q13.3) MUTATED      8    3
  DEL PEAK 15(13Q13.3) WILD-TYPE   12    6
    clus
vv   DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  M0                            8                             12
  MX                            3                              6
D35V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(13Q13.3) MUTATED      6    5
  DEL PEAK 15(13Q13.3) WILD-TYPE   13    6
    clus
vv   DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  N0                            6                             13
  N1                            5                              6
D35V10, continuous
D35V11, continuous

Clustering(36) Variable = Del Peak 17(14q32.31) mutation analysis
D36V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 17(14Q32.31) MUTATED    3  0
  DEL PEAK 17(14Q32.31) WILD-TYPE 24  6
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                              3                              30 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                              0                               6 
$`DEL PEAK 17(14Q32.31) MUTATED`
TCGA-C5-A1MF TCGA-EA-A3HQ TCGA-FU-A23L 
       53.13         1.74         1.22 

$`DEL PEAK 17(14Q32.31) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MI 
       49.48        30.41       177.04         5.46        67.46        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        2.43        40.93        78.31        70.85        42.38        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR 
        2.66        69.93        95.08         6.02         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A2QG 
        0.82         0.62         5.85         6.94         1.22         0.99 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        2.17         0.07         1.02         1.45        25.41         5.52 

  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                           1.22                            0.07 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                          53.13                          177.04 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                          1.740                           5.935 
[1] "1.2 - 53.1 (1.7)"  "0.1 - 177.0 (5.9)"
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 17(14Q32.31) WILD-TYPE"   "DEL PEAK 17(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "DEL PEAK 17(14Q32.31) MUTATED" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 17(14Q32.31) WILD-TYPE"   "DEL PEAK 17(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
"DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 17(14Q32.31) WILD-TYPE"   "DEL PEAK 17(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "DEL PEAK 17(14Q32.31) MUTATED" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 17(14Q32.31) WILD-TYPE"   "DEL PEAK 17(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
"DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-BI-A0VR                      TCGA-BI-A0VS 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1BK                      TCGA-C5-A1BN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1M5                      TCGA-C5-A1MF 
"DEL PEAK 17(14Q32.31) WILD-TYPE"   "DEL PEAK 17(14Q32.31) MUTATED" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MK 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MN                      TCGA-C5-A2LY 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZL                      TCGA-DR-A0ZM 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VK                      TCGA-DS-A0VL 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A0VM                      TCGA-DS-A0VN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DS-A3LQ                      TCGA-EA-A1QT 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HQ                      TCGA-EA-A3HR 
  "DEL PEAK 17(14Q32.31) MUTATED" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EA-A3HS                      TCGA-EA-A3HT 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-EX-A1H5                      TCGA-EX-A3L1 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A23K                      TCGA-FU-A23L 
"DEL PEAK 17(14Q32.31) WILD-TYPE"   "DEL PEAK 17(14Q32.31) MUTATED" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY                      TCGA-FU-A3HZ 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3NI                      TCGA-HG-A2PA 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-HM-A3JK 
"DEL PEAK 17(14Q32.31) WILD-TYPE" 
[1] "hr="     "7.5e+07"
D36V2, continuous
                                 vv
clus                              CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 17(14Q32.31) MUTATED                                  3
  DEL PEAK 17(14Q32.31) WILD-TYPE                               24
                                 vv
clus                              ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 17(14Q32.31) MUTATED                                     0
  DEL PEAK 17(14Q32.31) WILD-TYPE                                   1
                                 vv
clus                              SQUAMOUS CELL CARCINOMA
  DEL PEAK 17(14Q32.31) MUTATED                         0
  DEL PEAK 17(14Q32.31) WILD-TYPE                       6
D36V3, multiclass
                                     clus
vv                                    DEL PEAK 17(14Q32.31) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                                3
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             0
  SQUAMOUS CELL CARCINOMA                                         0
                                     clus
vv                                    DEL PEAK 17(14Q32.31) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                 24
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                               1
  SQUAMOUS CELL CARCINOMA                                           6
D36V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(14Q32.31) MUTATED      1    2
  DEL PEAK 17(14Q32.31) WILD-TYPE    9   22
     clus
vv    DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  NO                              1                               9
  YES                             2                              22
D36V5, continuous
[1] "Remove cluster labels:"        "DEL PEAK 17(14Q32.31) MUTATED"
clus
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                              1                               9 
                     TCGA-BI-A0VR                      TCGA-C5-A1BN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-C5-A1MI                      TCGA-C5-A1MN 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-DR-A0ZM                      TCGA-EX-A1H5 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-FU-A3EO 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A3HY 
"DEL PEAK 17(14Q32.31) WILD-TYPE" 
D36V6, continuous
[1] "Remove cluster labels:"        "DEL PEAK 17(14Q32.31) MUTATED"
clus
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                              1                               4 
                     TCGA-BI-A0VR                      TCGA-DS-A3LQ 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
                     TCGA-FU-A2QG                      TCGA-HM-A3JK 
"DEL PEAK 17(14Q32.31) WILD-TYPE" "DEL PEAK 17(14Q32.31) WILD-TYPE" 
D36V7, continuous
D36V8, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(14Q32.31) MUTATED      1    2
  DEL PEAK 17(14Q32.31) WILD-TYPE   19    7
    clus
vv   DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  M0                             1                              19
  MX                             2                               7
D36V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(14Q32.31) MUTATED      3    0
  DEL PEAK 17(14Q32.31) WILD-TYPE   16   11
    clus
vv   DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  N0                             3                              16
  N1                             0                              11
D36V10, continuous
D36V11, continuous

Clustering(37) Variable = Del Peak 18(16q11.2) mutation analysis
D37V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(16Q11.2) MUTATED    2  0
  DEL PEAK 18(16Q11.2) WILD-TYPE 25  6
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                             2                             31 
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                             0                              6 
$`DEL PEAK 18(16Q11.2) MUTATED`
TCGA-EA-A1QT TCGA-EA-A3HR 
        0.26         1.32 

$`DEL PEAK 18(16Q11.2) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ 
       36.76         2.66        69.93        95.08         6.02         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L 
        0.82         0.62         5.85         6.94         1.22         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA 
        0.99         2.17         0.07         1.02         1.45        25.41 
TCGA-HM-A3JK 
        5.52 

  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                          0.26                           0.07 
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                          1.32                         177.04 
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                          0.79                           6.02 
[1] "0.3 - 1.3 (0.8)"   "0.1 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 18(16Q11.2) WILD-TYPE"   "DEL PEAK 18(16Q11.2) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 18(16Q11.2) WILD-TYPE"   "DEL PEAK 18(16Q11.2) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 18(16Q11.2) WILD-TYPE"   "DEL PEAK 18(16Q11.2) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 18(16Q11.2) WILD-TYPE"   "DEL PEAK 18(16Q11.2) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 18(16Q11.2) WILD-TYPE"   "DEL PEAK 18(16Q11.2) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 18(16Q11.2) WILD-TYPE"   "DEL PEAK 18(16Q11.2) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" 
[1] "Remove cluster labels:"       "DEL PEAK 18(16Q11.2) MUTATED"
clus
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                             2                             31 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A3HQ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" 
D37V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 18(16Q11.2) MUTATED                                  3
  DEL PEAK 18(16Q11.2) WILD-TYPE                               24
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 18(16Q11.2) MUTATED                                     0
  DEL PEAK 18(16Q11.2) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 18(16Q11.2) MUTATED                         0
  DEL PEAK 18(16Q11.2) WILD-TYPE                       6
D37V3, multiclass
                                     clus
vv                                    DEL PEAK 18(16Q11.2) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               3
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        0
                                     clus
vv                                    DEL PEAK 18(16Q11.2) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                24
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          6
D37V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q11.2) MUTATED      0    3
  DEL PEAK 18(16Q11.2) WILD-TYPE   10   21
     clus
vv    DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  NO                             0                             10
  YES                            3                             21
D37V5, continuous
D37V6, continuous
D37V7, continuous
[1] "Remove cluster labels:"       "DEL PEAK 18(16Q11.2) MUTATED"
clus
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                             2                             31 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A3HQ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" 
D37V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q11.2) MUTATED      2    0
  DEL PEAK 18(16Q11.2) WILD-TYPE   18    9
    clus
vv   DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  M0                            2                             18
  MX                            0                              9
D37V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(16Q11.2) MUTATED      2    0
  DEL PEAK 18(16Q11.2) WILD-TYPE   17   11
    clus
vv   DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  N0                            2                             17
  N1                            0                             11
D37V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 18(16Q11.2) MUTATED"
clus
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                             2                             28 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1M5 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-DS-A3LQ 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HS 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EX-A1H5 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-FU-A23K 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A23L                     TCGA-FU-A2QG 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3EO                     TCGA-FU-A3HY 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-FU-A3HZ                     TCGA-FU-A3NI 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JK 
"DEL PEAK 18(16Q11.2) WILD-TYPE" "DEL PEAK 18(16Q11.2) WILD-TYPE" 
D37V11, continuous

Clustering(38) Variable = Del Peak 19(16q23.1) mutation analysis
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(16Q23.1) MUTATED    2  0
  DEL PEAK 19(16Q23.1) WILD-TYPE 25  6
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             2                             31 
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             0                              6 
$`DEL PEAK 19(16Q23.1) MUTATED`
TCGA-DS-A3LQ TCGA-FU-A3EO 
        6.02         2.17 

$`DEL PEAK 19(16Q23.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF 
       49.48        30.41       177.04         5.46        67.46        53.13 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM 
       35.61         2.43        40.93        78.31        70.85        42.38 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3HQ 
       36.76         2.66        69.93        95.08         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K 
        1.32         0.82         0.62         5.85         6.94         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA 
        1.22         0.99         0.07         1.02         1.45        25.41 
TCGA-HM-A3JK 
        5.52 

  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                          2.17                           0.07 
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                          6.02                         177.04 
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                         4.095                          5.850 
[1] "2.2 - 6.0 (4.1)"   "0.1 - 177.0 (5.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
  "DEL PEAK 19(16Q23.1) MUTATED" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 19(16Q23.1) WILD-TYPE"   "DEL PEAK 19(16Q23.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" 
[1] "Remove cluster labels:"       "DEL PEAK 19(16Q23.1) MUTATED"
clus
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             2                             31 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EX-A1H5 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-FU-A23K 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23L                     TCGA-FU-A2QG 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" 
D38V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 19(16Q23.1) MUTATED                                  1
  DEL PEAK 19(16Q23.1) WILD-TYPE                               26
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 19(16Q23.1) MUTATED                                     1
  DEL PEAK 19(16Q23.1) WILD-TYPE                                   0
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 19(16Q23.1) MUTATED                         1
  DEL PEAK 19(16Q23.1) WILD-TYPE                       5
D38V3, multiclass
                                     clus
vv                                    DEL PEAK 19(16Q23.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               1
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            1
  SQUAMOUS CELL CARCINOMA                                        1
                                     clus
vv                                    DEL PEAK 19(16Q23.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                26
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              0
  SQUAMOUS CELL CARCINOMA                                          5
D38V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(16Q23.1) MUTATED      1    2
  DEL PEAK 19(16Q23.1) WILD-TYPE    9   22
     clus
vv    DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  NO                             1                              9
  YES                            2                             22
D38V5, continuous
[1] "Remove cluster labels:"       "DEL PEAK 19(16Q23.1) MUTATED"
clus
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             1                              9 
                    TCGA-BI-A0VR                     TCGA-C5-A1BN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3HY 
"DEL PEAK 19(16Q23.1) WILD-TYPE" 
D38V6, continuous
[1] "Remove cluster labels:"       "DEL PEAK 19(16Q23.1) MUTATED"
clus
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             1                              4 
                    TCGA-BI-A0VR                     TCGA-C5-A1MF 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-HM-A3JK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
D38V7, continuous
[1] "Remove cluster labels:"       "DEL PEAK 19(16Q23.1) MUTATED"
clus
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             2                             31 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A1QT                     TCGA-EA-A3HQ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HR                     TCGA-EA-A3HS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HT                     TCGA-EX-A1H5 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A3L1                     TCGA-FU-A23K 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23L                     TCGA-FU-A2QG 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" 
D38V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(16Q23.1) MUTATED      1    1
  DEL PEAK 19(16Q23.1) WILD-TYPE   19    8
    clus
vv   DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  M0                            1                             19
  MX                            1                              8
D38V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(16Q23.1) MUTATED      1    1
  DEL PEAK 19(16Q23.1) WILD-TYPE   18   10
    clus
vv   DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  N0                            1                             18
  N1                            1                             10
D38V10, continuous
[1] "Remove cluster labels:"       "DEL PEAK 19(16Q23.1) MUTATED"
clus
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                             2                             28 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1M5 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-C5-A2LY                     TCGA-DR-A0ZL 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DR-A0ZM                     TCGA-DS-A0VK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VL                     TCGA-DS-A0VM 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-DS-A0VN                     TCGA-EA-A1QT 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3HY 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-FU-A3HZ                     TCGA-FU-A3NI 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
                    TCGA-HG-A2PA                     TCGA-HM-A3JK 
"DEL PEAK 19(16Q23.1) WILD-TYPE" "DEL PEAK 19(16Q23.1) WILD-TYPE" 
D38V11, continuous

Clustering(39) Variable = Del Peak 20(17p12) mutation analysis
D39V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 20(17P12) MUTATED    9  3
  DEL PEAK 20(17P12) WILD-TYPE 18  3
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                          12                           21 
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                           3                            3 
$`DEL PEAK 20(17P12) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VN 
        5.46        67.46        40.93        70.85         2.66        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A3EO TCGA-FU-A3NI 
        6.02         0.26         5.85         6.94         2.17         1.45 

$`DEL PEAK 20(17P12) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       49.48        30.41       177.04        53.13        35.61         2.43 
TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-EA-A3HQ TCGA-EA-A3HR 
       78.31        42.38        36.76        69.93         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY 
        0.82         0.62         1.22         1.22         0.99         0.07 
TCGA-FU-A3HZ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02        25.41         5.52 

  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                        0.26                         0.07 
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                       95.08                       177.04 
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                       5.935                        5.520 
[1] "0.3 - 95.1 (5.9)"  "0.1 - 177.0 (5.5)"
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-BI-A0VR                   TCGA-BI-A0VS 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1BK                   TCGA-C5-A1BN 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-C5-A1M5                   TCGA-C5-A1MF 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1MI                   TCGA-C5-A1MK 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-C5-A1MN                   TCGA-C5-A2LY 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DR-A0ZL                   TCGA-DR-A0ZM 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-DS-A0VK                   TCGA-DS-A0VL 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DS-A0VM                   TCGA-DS-A0VN 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-DS-A3LQ                   TCGA-EA-A1QT 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-EA-A3HQ                   TCGA-EA-A3HR 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-EA-A3HS                   TCGA-EA-A3HT 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-EX-A1H5                   TCGA-EX-A3L1 
  "DEL PEAK 20(17P12) MUTATED"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-FU-A23K                   TCGA-FU-A23L 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-FU-A3EO 
"DEL PEAK 20(17P12) WILD-TYPE"   "DEL PEAK 20(17P12) MUTATED" 
                  TCGA-FU-A3HY                   TCGA-FU-A3HZ 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FU-A3NI                   TCGA-HG-A2PA 
  "DEL PEAK 20(17P12) MUTATED" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-HM-A3JK 
"DEL PEAK 20(17P12) WILD-TYPE" 
[1] "hr=" "1.5"
D39V2, continuous
                              vv
clus                           CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 20(17P12) MUTATED                                  8
  DEL PEAK 20(17P12) WILD-TYPE                               19
                              vv
clus                           ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 20(17P12) MUTATED                                     1
  DEL PEAK 20(17P12) WILD-TYPE                                   0
                              vv
clus                           SQUAMOUS CELL CARCINOMA
  DEL PEAK 20(17P12) MUTATED                         3
  DEL PEAK 20(17P12) WILD-TYPE                       3
D39V3, multiclass
                                     clus
vv                                    DEL PEAK 20(17P12) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                             8
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                          1
  SQUAMOUS CELL CARCINOMA                                      3
                                     clus
vv                                    DEL PEAK 20(17P12) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                              19
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        3
D39V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(17P12) MUTATED      5    7
  DEL PEAK 20(17P12) WILD-TYPE    5   17
     clus
vv    DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  NO                           5                            5
  YES                          7                           17
D39V5, continuous
D39V6, continuous
[1] "Remove cluster labels:"     "DEL PEAK 20(17P12) MUTATED"
clus
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                           1                            4 
                  TCGA-BI-A0VR                   TCGA-C5-A1MF 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
                  TCGA-FU-A2QG                   TCGA-HM-A3JK 
"DEL PEAK 20(17P12) WILD-TYPE" "DEL PEAK 20(17P12) WILD-TYPE" 
D39V7, continuous
D39V8, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(17P12) MUTATED      7    3
  DEL PEAK 20(17P12) WILD-TYPE   13    6
    clus
vv   DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  M0                          7                           13
  MX                          3                            6
D39V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 20(17P12) MUTATED      7    3
  DEL PEAK 20(17P12) WILD-TYPE   12    8
    clus
vv   DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  N0                          7                           12
  N1                          3                            8
D39V10, continuous
D39V11, continuous

Clustering(40) Variable = Del Peak 21(17q25.3) mutation analysis
D40V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(17Q25.3) MUTATED    5  3
  DEL PEAK 21(17Q25.3) WILD-TYPE 22  3
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                             8                             25 
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                             3                              3 
$`DEL PEAK 21(17Q25.3) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MN TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VN TCGA-EA-A1QT 
        5.46        40.93        70.85        36.76        95.08         0.26 
TCGA-EA-A3HR TCGA-FU-A3HY 
        1.32         0.07 

$`DEL PEAK 21(17Q25.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48        30.41       177.04        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
        2.43        78.31        42.38         2.66        69.93         6.02 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K 
        1.74         0.82         0.62         5.85         6.94         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA 
        1.22         0.99         2.17         1.02         1.45        25.41 
TCGA-HM-A3JK 
        5.52 

  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                          0.07                           0.62 
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                         21.11                           5.85 
[1] "0.1 - 95.1 (21.1)" "0.6 - 177.0 (5.8)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 21(17Q25.3) WILD-TYPE"   "DEL PEAK 21(17Q25.3) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 21(17Q25.3) MUTATED" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 21(17Q25.3) WILD-TYPE" "DEL PEAK 21(17Q25.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 21(17Q25.3) WILD-TYPE" 
[1] "hr=" "2.3"
D40V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 21(17Q25.3) MUTATED                                  7
  DEL PEAK 21(17Q25.3) WILD-TYPE                               20
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 21(17Q25.3) MUTATED                                     0
  DEL PEAK 21(17Q25.3) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 21(17Q25.3) MUTATED                         1
  DEL PEAK 21(17Q25.3) WILD-TYPE                       5
D40V3, multiclass
                                     clus
vv                                    DEL PEAK 21(17Q25.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               7
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        1
                                     clus
vv                                    DEL PEAK 21(17Q25.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                20
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          5
D40V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(17Q25.3) MUTATED      3    5
  DEL PEAK 21(17Q25.3) WILD-TYPE    7   19
     clus
vv    DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  NO                             3                              7
  YES                            5                             19
D40V5, continuous
D40V6, continuous
D40V7, continuous
D40V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(17Q25.3) MUTATED      5    1
  DEL PEAK 21(17Q25.3) WILD-TYPE   15    8
    clus
vv   DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  M0                            5                             15
  MX                            1                              8
D40V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(17Q25.3) MUTATED      4    2
  DEL PEAK 21(17Q25.3) WILD-TYPE   15    9
    clus
vv   DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  N0                            4                             15
  N1                            2                              9
D40V10, continuous
D40V11, continuous

Clustering(41) Variable = Del Peak 22(19p13.3) mutation analysis
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(19P13.3) MUTATED    5  3
  DEL PEAK 22(19P13.3) WILD-TYPE 22  3
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                             8                             25 
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                             3                              3 
$`DEL PEAK 22(19P13.3) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MN TCGA-DS-A0VM TCGA-DS-A0VN 
        5.46        53.13        35.61        40.93        69.93        95.08 
TCGA-EA-A1QT TCGA-FU-A23L 
        0.26         1.22 

$`DEL PEAK 22(19P13.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A2LY 
       49.48        30.41       177.04        67.46         2.43        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-EA-A3HQ 
       70.85        42.38        36.76         2.66         6.02         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K 
        1.32         0.82         0.62         5.85         6.94         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA 
        0.99         2.17         0.07         1.02         1.45        25.41 
TCGA-HM-A3JK 
        5.52 

  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                          0.26                           0.07 
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                         38.27                           5.52 
[1] "0.3 - 95.1 (38.3)" "0.1 - 177.0 (5.5)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 22(19P13.3) MUTATED" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 22(19P13.3) MUTATED" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 22(19P13.3) MUTATED"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 22(19P13.3) MUTATED" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 22(19P13.3) MUTATED" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 22(19P13.3) MUTATED"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
  "DEL PEAK 22(19P13.3) MUTATED" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 22(19P13.3) MUTATED" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
  "DEL PEAK 22(19P13.3) MUTATED"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 22(19P13.3) WILD-TYPE"   "DEL PEAK 22(19P13.3) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 22(19P13.3) WILD-TYPE" 
[1] "hr=" "1.8"
D41V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 22(19P13.3) MUTATED                                  9
  DEL PEAK 22(19P13.3) WILD-TYPE                               18
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 22(19P13.3) MUTATED                                     0
  DEL PEAK 22(19P13.3) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 22(19P13.3) MUTATED                         0
  DEL PEAK 22(19P13.3) WILD-TYPE                       6
D41V3, multiclass
                                     clus
vv                                    DEL PEAK 22(19P13.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               9
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        0
                                     clus
vv                                    DEL PEAK 22(19P13.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                18
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          6
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(19P13.3) MUTATED      5    4
  DEL PEAK 22(19P13.3) WILD-TYPE    5   20
     clus
vv    DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  NO                             5                              5
  YES                            4                             20
D41V5, continuous
D41V6, continuous
[1] "Remove cluster labels:"       "DEL PEAK 22(19P13.3) MUTATED"
clus
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                             1                              4 
                    TCGA-BI-A0VR                     TCGA-DS-A3LQ 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-HM-A3JK 
"DEL PEAK 22(19P13.3) WILD-TYPE" "DEL PEAK 22(19P13.3) WILD-TYPE" 
D41V7, continuous
D41V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(19P13.3) MUTATED      4    2
  DEL PEAK 22(19P13.3) WILD-TYPE   16    7
    clus
vv   DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  M0                            4                             16
  MX                            2                              7
D41V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(19P13.3) MUTATED      4    2
  DEL PEAK 22(19P13.3) WILD-TYPE   15    9
    clus
vv   DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  N0                            4                             15
  N1                            2                              9
D41V10, continuous
D41V11, continuous

Clustering(42) Variable = Del Peak 23(20p12.1) mutation analysis
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(20P12.1) MUTATED    5  0
  DEL PEAK 23(20P12.1) WILD-TYPE 22  6
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                             5                             28 
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                             0                              6 
$`DEL PEAK 23(20P12.1) MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-EA-A1QT TCGA-FU-A3EO TCGA-FU-A3HY 
       49.48       177.04         0.26         2.17         0.07 

$`DEL PEAK 23(20P12.1) WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MK 
       30.41         5.46        67.46        53.13        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       40.93        78.31        70.85        42.38        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
       69.93        95.08         6.02         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
        0.62         5.85         6.94         1.22         1.22         0.99 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        1.02         1.45        25.41         5.52 

  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                          0.07                           0.62 
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                        177.04                          95.08 
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                         2.170                          5.935 
[1] "0.1 - 177.0 (2.2)" "0.6 - 95.1 (5.9)" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 23(20P12.1) WILD-TYPE"   "DEL PEAK 23(20P12.1) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(20P12.1) WILD-TYPE"   "DEL PEAK 23(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 23(20P12.1) WILD-TYPE"   "DEL PEAK 23(20P12.1) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(20P12.1) WILD-TYPE"   "DEL PEAK 23(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 23(20P12.1) WILD-TYPE"   "DEL PEAK 23(20P12.1) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 23(20P12.1) WILD-TYPE"   "DEL PEAK 23(20P12.1) MUTATED" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 23(20P12.1) MUTATED" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 23(20P12.1) WILD-TYPE" 
[1] "hr="     "2.4e+08"
D42V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 23(20P12.1) MUTATED                                  4
  DEL PEAK 23(20P12.1) WILD-TYPE                               23
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 23(20P12.1) MUTATED                                     1
  DEL PEAK 23(20P12.1) WILD-TYPE                                   0
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 23(20P12.1) MUTATED                         1
  DEL PEAK 23(20P12.1) WILD-TYPE                       5
D42V3, multiclass
                                     clus
vv                                    DEL PEAK 23(20P12.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               4
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            1
  SQUAMOUS CELL CARCINOMA                                        1
                                     clus
vv                                    DEL PEAK 23(20P12.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                23
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              0
  SQUAMOUS CELL CARCINOMA                                          5
D42V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(20P12.1) MUTATED      0    6
  DEL PEAK 23(20P12.1) WILD-TYPE   10   18
     clus
vv    DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  NO                             0                             10
  YES                            6                             18
D42V5, continuous
D42V6, continuous
[1] "Remove cluster labels:"       "DEL PEAK 23(20P12.1) MUTATED"
clus
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                             1                              4 
                    TCGA-C5-A1MF                     TCGA-DS-A3LQ 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-HM-A3JK 
"DEL PEAK 23(20P12.1) WILD-TYPE" "DEL PEAK 23(20P12.1) WILD-TYPE" 
D42V7, continuous
D42V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(20P12.1) MUTATED      2    3
  DEL PEAK 23(20P12.1) WILD-TYPE   18    6
    clus
vv   DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  M0                            2                             18
  MX                            3                              6
D42V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(20P12.1) MUTATED      3    2
  DEL PEAK 23(20P12.1) WILD-TYPE   16    9
    clus
vv   DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  N0                            3                             16
  N1                            2                              9
D42V10, continuous
D42V11, continuous

Clustering(43) Variable = Del Peak 24(21q21.1) mutation analysis
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(21Q21.1) MUTATED    9  0
  DEL PEAK 24(21Q21.1) WILD-TYPE 18  6
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                             9                             24 
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                             0                              6 
$`DEL PEAK 24(21Q21.1) MUTATED`
TCGA-BI-A0VS TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EX-A3L1 
       30.41        70.85         2.66         0.26         1.32         6.94 
TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        1.22         0.07         1.45 

$`DEL PEAK 24(21Q21.1) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MI 
       49.48       177.04         5.46        67.46        53.13        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LY TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM 
        2.43        40.93        78.31        42.38        36.76        69.93 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A1H5 
       95.08         6.02         1.74         0.82         0.62         5.85 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-HG-A2PA TCGA-HM-A3JK 
        1.22         0.99         2.17         1.02        25.41         5.52 

  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                          0.07                           0.62 
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                         70.85                         177.04 
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                         1.450                         15.715 
[1] "0.1 - 70.8 (1.4)"   "0.6 - 177.0 (15.7)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 24(21Q21.1) WILD-TYPE"   "DEL PEAK 24(21Q21.1) MUTATED" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
  "DEL PEAK 24(21Q21.1) MUTATED" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 24(21Q21.1) WILD-TYPE" 
[1] "hr="     "2.3e+08"
D43V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 24(21Q21.1) MUTATED                                  6
  DEL PEAK 24(21Q21.1) WILD-TYPE                               21
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 24(21Q21.1) MUTATED                                     0
  DEL PEAK 24(21Q21.1) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 24(21Q21.1) MUTATED                         3
  DEL PEAK 24(21Q21.1) WILD-TYPE                       3
D43V3, multiclass
                                     clus
vv                                    DEL PEAK 24(21Q21.1) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               6
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        3
                                     clus
vv                                    DEL PEAK 24(21Q21.1) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                21
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          3
D43V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(21Q21.1) MUTATED      0    9
  DEL PEAK 24(21Q21.1) WILD-TYPE   10   15
     clus
vv    DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  NO                             0                             10
  YES                            9                             15
D43V5, continuous
[1] "Remove cluster labels:"       "DEL PEAK 24(21Q21.1) MUTATED"
clus
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                             1                              9 
                    TCGA-BI-A0VR                     TCGA-C5-A1BN 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MF                     TCGA-C5-A1MI 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-C5-A1MN                     TCGA-DR-A0ZM 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-FU-A2QG 
"DEL PEAK 24(21Q21.1) WILD-TYPE" "DEL PEAK 24(21Q21.1) WILD-TYPE" 
                    TCGA-FU-A3EO 
"DEL PEAK 24(21Q21.1) WILD-TYPE" 
D43V6, continuous
D43V7, continuous
D43V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(21Q21.1) MUTATED      6    3
  DEL PEAK 24(21Q21.1) WILD-TYPE   14    6
    clus
vv   DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  M0                            6                             14
  MX                            3                              6
D43V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(21Q21.1) MUTATED      7    2
  DEL PEAK 24(21Q21.1) WILD-TYPE   12    9
    clus
vv   DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  N0                            7                             12
  N1                            2                              9
D43V10, continuous
D43V11, continuous

Clustering(44) Variable = Del Peak 25(Xp11.3) mutation analysis
D44V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 25(XP11.3) MUTATED   11  2
  DEL PEAK 25(XP11.3) WILD-TYPE 16  4
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                           13                            20 
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                            2                             4 
$`DEL PEAK 25(XP11.3) MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MN TCGA-DS-A0VN 
       30.41       177.04         5.46        53.13        40.93        95.08 
TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A3HY 
        6.02         0.26         1.32         5.85         0.99         0.07 
TCGA-FU-A3NI 
        1.45 

$`DEL PEAK 25(XP11.3) WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A2LY TCGA-DR-A0ZL 
       49.48        67.46        35.61         2.43        78.31        70.85 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A3HQ TCGA-EA-A3HS 
       42.38        36.76         2.66        69.93         1.74         0.82 
TCGA-EA-A3HT TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ 
        0.62         6.94         1.22         1.22         2.17         1.02 
TCGA-HG-A2PA TCGA-HM-A3JK 
       25.41         5.52 

  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                         0.07                          0.62 
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                       177.04                         78.31 
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                         5.85                          6.23 
[1] "0.1 - 177.0 (5.8)" "0.6 - 78.3 (6.2)" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 25(XP11.3) MUTATED"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK 25(XP11.3) MUTATED"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 25(XP11.3) MUTATED"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK 25(XP11.3) MUTATED"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-BI-A0VR                    TCGA-BI-A0VS 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1BK                    TCGA-C5-A1BN 
  "DEL PEAK 25(XP11.3) MUTATED"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1M5                    TCGA-C5-A1MF 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-C5-A1MI                    TCGA-C5-A1MK 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-C5-A1MN                    TCGA-C5-A2LY 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DR-A0ZL                    TCGA-DR-A0ZM 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VK                    TCGA-DS-A0VL 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-DS-A0VM                    TCGA-DS-A0VN 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-DS-A3LQ                    TCGA-EA-A1QT 
  "DEL PEAK 25(XP11.3) MUTATED"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-EA-A3HQ                    TCGA-EA-A3HR 
"DEL PEAK 25(XP11.3) WILD-TYPE"   "DEL PEAK 25(XP11.3) MUTATED" 
                   TCGA-EA-A3HS                    TCGA-EA-A3HT 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-EX-A1H5                    TCGA-EX-A3L1 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A23K                    TCGA-FU-A23L 
"DEL PEAK 25(XP11.3) WILD-TYPE" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A2QG                    TCGA-FU-A3EO 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3HY                    TCGA-FU-A3HZ 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-FU-A3NI                    TCGA-HG-A2PA 
  "DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) WILD-TYPE" 
                   TCGA-HM-A3JK 
"DEL PEAK 25(XP11.3) WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
                               vv
clus                            CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 25(XP11.3) MUTATED                                 10
  DEL PEAK 25(XP11.3) WILD-TYPE                               17
                               vv
clus                            ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 25(XP11.3) MUTATED                                     0
  DEL PEAK 25(XP11.3) WILD-TYPE                                   1
                               vv
clus                            SQUAMOUS CELL CARCINOMA
  DEL PEAK 25(XP11.3) MUTATED                         3
  DEL PEAK 25(XP11.3) WILD-TYPE                       3
D44V3, multiclass
                                     clus
vv                                    DEL PEAK 25(XP11.3) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                             10
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                           0
  SQUAMOUS CELL CARCINOMA                                       3
                                     clus
vv                                    DEL PEAK 25(XP11.3) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                               17
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                             1
  SQUAMOUS CELL CARCINOMA                                         3
D44V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 25(XP11.3) MUTATED      6    7
  DEL PEAK 25(XP11.3) WILD-TYPE    4   17
     clus
vv    DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  NO                            6                             4
  YES                           7                            17
D44V5, continuous
D44V6, continuous
[1] "Remove cluster labels:"        "DEL PEAK 25(XP11.3) WILD-TYPE"
clus
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                            3                             2 
                 TCGA-C5-A1MF                  TCGA-DS-A3LQ 
"DEL PEAK 25(XP11.3) MUTATED" "DEL PEAK 25(XP11.3) MUTATED" 
                 TCGA-FU-A2QG 
"DEL PEAK 25(XP11.3) MUTATED" 
D44V7, continuous
D44V8, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 25(XP11.3) MUTATED      5    5
  DEL PEAK 25(XP11.3) WILD-TYPE   15    4
    clus
vv   DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  M0                           5                            15
  MX                           5                             4
D44V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 25(XP11.3) MUTATED      7    4
  DEL PEAK 25(XP11.3) WILD-TYPE   12    7
    clus
vv   DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  N0                           7                            12
  N1                           4                             7
D44V10, continuous
D44V11, continuous

Clustering(45) Variable = Del Peak 26(Xq21.33) mutation analysis
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(XQ21.33) MUTATED    5  5
  DEL PEAK 26(XQ21.33) WILD-TYPE 22  1
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                            10                             23 
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                             5                              1 
$`DEL PEAK 26(XQ21.33) MUTATED`
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-DS-A0VK TCGA-DS-A0VN 
        5.46        67.46         2.43        40.93        36.76        95.08 
TCGA-EA-A1QT TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A3HY 
        0.26         5.85         0.99         0.07 

$`DEL PEAK 26(XQ21.33) WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BK TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A2LY 
       49.48        30.41       177.04        53.13        35.61        78.31 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HQ 
       70.85        42.38         2.66        69.93         6.02         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EX-A3L1 TCGA-FU-A23K TCGA-FU-A23L 
        1.32         0.82         0.62         6.94         1.22         1.22 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-HG-A2PA TCGA-HM-A3JK 
        2.17         1.02         1.45        25.41         5.52 

  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                          0.07                           0.62 
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                         95.08                         177.04 
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                         5.655                          6.020 
[1] "0.1 - 95.1 (5.7)"  "0.6 - 177.0 (6.0)"
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-BI-A0VR                     TCGA-BI-A0VS 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1BK                     TCGA-C5-A1BN 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-C5-A1M5                     TCGA-C5-A1MF 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-C5-A1MI                     TCGA-C5-A1MK 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-C5-A1MN                     TCGA-C5-A2LY 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DR-A0ZL                     TCGA-DR-A0ZM 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VK                     TCGA-DS-A0VL 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A0VM                     TCGA-DS-A0VN 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-DS-A3LQ                     TCGA-EA-A1QT 
"DEL PEAK 26(XQ21.33) WILD-TYPE"   "DEL PEAK 26(XQ21.33) MUTATED" 
                    TCGA-EA-A3HQ                     TCGA-EA-A3HR 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-EA-A3HS                     TCGA-EA-A3HT 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-EX-A1H5                     TCGA-EX-A3L1 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A23K                     TCGA-FU-A23L 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A2QG                     TCGA-FU-A3EO 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3HY                     TCGA-FU-A3HZ 
  "DEL PEAK 26(XQ21.33) MUTATED" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-FU-A3NI                     TCGA-HG-A2PA 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-HM-A3JK 
"DEL PEAK 26(XQ21.33) WILD-TYPE" 
[1] "hr=" "10" 
D45V2, continuous
                                vv
clus                             CERVICAL SQUAMOUS CELL CARCINOMA
  DEL PEAK 26(XQ21.33) MUTATED                                  9
  DEL PEAK 26(XQ21.33) WILD-TYPE                               18
                                vv
clus                             ENDOCERVICAL TYPE OF ADENOCARCINOMA
  DEL PEAK 26(XQ21.33) MUTATED                                     0
  DEL PEAK 26(XQ21.33) WILD-TYPE                                   1
                                vv
clus                             SQUAMOUS CELL CARCINOMA
  DEL PEAK 26(XQ21.33) MUTATED                         1
  DEL PEAK 26(XQ21.33) WILD-TYPE                       5
D45V3, multiclass
                                     clus
vv                                    DEL PEAK 26(XQ21.33) MUTATED
  CERVICAL SQUAMOUS CELL CARCINOMA                               9
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                            0
  SQUAMOUS CELL CARCINOMA                                        1
                                     clus
vv                                    DEL PEAK 26(XQ21.33) WILD-TYPE
  CERVICAL SQUAMOUS CELL CARCINOMA                                18
  ENDOCERVICAL TYPE OF ADENOCARCINOMA                              1
  SQUAMOUS CELL CARCINOMA                                          5
D45V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(XQ21.33) MUTATED      5    5
  DEL PEAK 26(XQ21.33) WILD-TYPE    5   19
     clus
vv    DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  NO                             5                              5
  YES                            5                             19
D45V5, continuous
D45V6, continuous
[1] "Remove cluster labels:"       "DEL PEAK 26(XQ21.33) MUTATED"
clus
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                             1                              4 
                    TCGA-BI-A0VR                     TCGA-C5-A1MF 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
                    TCGA-DS-A3LQ                     TCGA-HM-A3JK 
"DEL PEAK 26(XQ21.33) WILD-TYPE" "DEL PEAK 26(XQ21.33) WILD-TYPE" 
D45V7, continuous
D45V8, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(XQ21.33) MUTATED      4    2
  DEL PEAK 26(XQ21.33) WILD-TYPE   16    7
    clus
vv   DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  M0                            4                             16
  MX                            2                              7
D45V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(XQ21.33) MUTATED      4    3
  DEL PEAK 26(XQ21.33) WILD-TYPE   15    8
    clus
vv   DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  N0                            4                             15
  N1                            3                              8
D45V10, continuous
D45V11, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                     "HISTOLOGICAL.TYPE" 
                                      V4 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V5 
                 "NUMBERPACKYEARSSMOKED" 
                                      V6 
                    "STOPPEDSMOKINGYEAR" 
                                      V7 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                      V8 
                    "DISTANT.METASTASIS" 
                                      V9 
                 "LYMPH.NODE.METASTASIS" 
                                     V10 
                 "NUMBER.OF.LYMPH.NODES" 
                                     V11 
                       "TUMOR.STAGECODE" 
> q(save="no")
