GDAC_MergedClusteringPipeline Execution Log 2:44 PM Mon Mar 4, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/ESCA-TP/2661218/3.GDAC_CNMFselectcluster.Finished/ESCA-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile ESCA-TP
Execution Times:
Submitted: 14:44:38 04-03-13
Completed:
Elapsed: 00 hrs 01 mins 01 secs

step 1. GDAC_mergedClustering [id: 333185] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/ESCA-TP/2661218/3.GDAC_CNMFselectcluster.Finished/ESCA-TP.bestclus.txt
mergedfile ESCA-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf
mRNAseqhc
miRseqcnmf
miRseqhc
Output Files:
 ESCA-TP.mergedcluster.txt
 ESCA-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 14:44:38 04-03-13
Completed: 14:45:09 04-03-13
Elapsed: 00 hrs 00 mins 30 secs

step 2. GDAC_mergedReport [id: 333186]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster ESCA-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 14:44:38 04-03-13
Completed: 14:45:38 04-03-13
Elapsed: 00 hrs 00 mins 59 secs