GDAC_MergedClusteringPipeline Execution Log 8:02 PM Mon Mar 4, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661819/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/KIRC-TP/2661813/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2662506/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2662104/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile KIRC-TP
GDAC_mergedClustering1 PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661798/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRC-TP/2661803/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661796/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRC-TP/2661804/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661815/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRC-TP/2661816/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
Execution Times:
Submitted: 20:02:15 04-03-13
Completed:
Elapsed: 00 hrs 00 mins 41 secs

step 1. GDAC_mergedClustering [id: 335345] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661819/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/KIRC-TP/2661813/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2662506/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2662104/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
mergedfile KIRC-TP
PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661798/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRC-TP/2661803/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661796/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRC-TP/2661804/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/KIRC-TP/2661815/3.GDAC_CNMFselectcluster.Finished/KIRC-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/KIRC-TP/2661816/3.GDAC_selectBestcluster.Finished/KIRC-TP.bestclus.txt
Output Files:
 KIRC-TP.transferedmergedcluster.txt
 .lsf.out
 KIRC-TP.mergedcluster.txt
 stdout.txt
Execution Times:
Submitted: 20:02:15 04-03-13
Completed: 20:02:34 04-03-13
Elapsed: 00 hrs 00 mins 19 secs

step 2. GDAC_mergedReport [id: 335346]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster KIRC-TP.transferedmergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 20:02:15 04-03-13
Completed: 20:02:55 04-03-13
Elapsed: 00 hrs 00 mins 39 secs