
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_mutation_onlysig.3.4048/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/338875/KIRP-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/KIRP-TP/2709428/1.GDAC_mergedClustering.Finished/KIRP-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRP-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRP-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=117, in cluster file=100, common to both=100
[1]   7 100
[1] "CDC27 MUTATION ANALYSIS"
[1] 3
  CDC27 MUTATED CDC27 WILD-TYPE 
              4              96 
  CDC27 MUTATED CDC27 WILD-TYPE 
              4              96 
[1] "MET MUTATION ANALYSIS"
[1] 3
  MET MUTATED MET WILD-TYPE 
            8            92 
  MET MUTATED MET WILD-TYPE 
            8            92 
[1] "IL32 MUTATION ANALYSIS"
[1] 3
  IL32 MUTATED IL32 WILD-TYPE 
             4             96 
  IL32 MUTATED IL32 WILD-TYPE 
             4             96 
[1] "PCF11 MUTATION ANALYSIS"
[1] 3
  PCF11 MUTATED PCF11 WILD-TYPE 
              7              93 
  PCF11 MUTATED PCF11 WILD-TYPE 
              7              93 
[1] "SFRS2IP MUTATION ANALYSIS"
[1] 3
  SFRS2IP MUTATED SFRS2IP WILD-TYPE 
                5                95 
  SFRS2IP MUTATED SFRS2IP WILD-TYPE 
                5                95 
[1] "NF2 MUTATION ANALYSIS"
[1] 3
  NF2 MUTATED NF2 WILD-TYPE 
            6            94 
  NF2 MUTATED NF2 WILD-TYPE 
            6            94 
[1] "LGI4 MUTATION ANALYSIS"
[1] 3
  LGI4 MUTATED LGI4 WILD-TYPE 
             4             96 
  LGI4 MUTATED LGI4 WILD-TYPE 
             4             96 
[1] "data2feature, selection=ALL"
[1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
[4] "METHLYATION_CNMF"      "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 100 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
[4] "METHLYATION_CNMF"      "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 100 columns, 0 survival variables, and 8 non-survival variables.
MRNA_CNMF, nv=2, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CDC27 MUTATION ANALYSIS
D1V1, binary
                 cls
clus              0 1
  CDC27 MUTATED   0 0
  CDC27 WILD-TYPE 7 8
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDC27 MUTATED      0    0
  CDC27 WILD-TYPE    7    8
D1V2, multiclass
D1V3, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              16
  CLUS_2             0              16
  CLUS_3             1              25
  CLUS_4             1              39
D1V4, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             0              21
  CLUS_2             2              25
  CLUS_3             2              35
D1V5, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              23
  CLUS_3             2              23
D1V6, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             2              34
  CLUS_3             1              20
D1V7, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             2              21
  CLUS_2             1              31
  CLUS_3             0              28
  CLUS_4             1              16
D1V8, multiclass
        clus
vv       CDC27 MUTATED CDC27 WILD-TYPE
  CLUS_1             1              24
  CLUS_2             2              36
  CLUS_3             1              10
  CLUS_4             0              26

Clustering(2) Variable = MET MUTATION ANALYSIS
D2V1, binary
               cls
clus            0 1
  MET MUTATED   0 1
  MET WILD-TYPE 7 7
[1] "tbl2"
               cls
clus            [,1] [,2]
  MET MUTATED      0    1
  MET WILD-TYPE    7    7
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1             7
D2V2, multiclass
[1] "Remove cluster labels:" "MET MUTATED"           
clus
  MET MUTATED MET WILD-TYPE 
            1            14 
   TCGA-AL-3466    TCGA-AL-3467    TCGA-AL-3468    TCGA-AL-3473    TCGA-B3-3925 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B3-3926    TCGA-B3-4103    TCGA-B3-4104    TCGA-B9-4113    TCGA-B9-4114 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
   TCGA-B9-4115    TCGA-B9-4116    TCGA-B9-4117    TCGA-B9-4617 
"MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" "MET WILD-TYPE" 
D2V3, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           0            18
  CLUS_2           2            14
  CLUS_3           4            22
  CLUS_4           2            38
D2V4, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           3            18
  CLUS_2           1            26
  CLUS_3           3            34
D2V5, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           3            23
  CLUS_2           2            22
  CLUS_3           1            24
D2V6, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           1            17
  CLUS_2           4            32
  CLUS_3           1            20
D2V7, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           4            19
  CLUS_2           3            29
  CLUS_3           0            28
  CLUS_4           1            16
D2V8, multiclass
        clus
vv       MET MUTATED MET WILD-TYPE
  CLUS_1           4            21
  CLUS_2           4            34
  CLUS_3           0            11
  CLUS_4           0            26

Clustering(3) Variable = IL32 MUTATION ANALYSIS
D3V1, binary
                cls
clus             0 1
  IL32 MUTATED   2 0
  IL32 WILD-TYPE 5 8
[1] "tbl2"
                cls
clus             [,1] [,2]
  IL32 MUTATED      2    0
  IL32 WILD-TYPE    5    8
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            2              5
  CLUS_2            0              8
D3V2, multiclass
[1] "Remove cluster labels:" "IL32 MUTATED"          
clus
  IL32 MUTATED IL32 WILD-TYPE 
             2             13 
    TCGA-AL-3466     TCGA-AL-3467     TCGA-AL-3468     TCGA-AL-3472 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-AL-3473     TCGA-B3-3926     TCGA-B3-4104     TCGA-B9-4113 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-B9-4114     TCGA-B9-4115     TCGA-B9-4116     TCGA-B9-4117 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-B9-4617 
"IL32 WILD-TYPE" 
D3V3, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             14
  CLUS_3            1             25
  CLUS_4            0             40
D3V4, multiclass
[1] "Remove cluster labels:" "IL32 MUTATED"          
clus
  IL32 MUTATED IL32 WILD-TYPE 
             2             83 
    TCGA-A4-7286     TCGA-A4-7287     TCGA-A4-7288     TCGA-A4-7583 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-A4-7584     TCGA-A4-7585     TCGA-A4-7732     TCGA-A4-7734 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-A4-7828     TCGA-A4-7915     TCGA-A4-7996     TCGA-A4-7997 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-AL-7173     TCGA-B1-5398     TCGA-B9-5155     TCGA-B9-5156 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-B9-7268     TCGA-BQ-5875     TCGA-BQ-5876     TCGA-BQ-5877 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-5878     TCGA-BQ-5879     TCGA-BQ-5880     TCGA-BQ-5881 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-5882     TCGA-BQ-5883     TCGA-BQ-5884     TCGA-BQ-5885 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-5886     TCGA-BQ-5887     TCGA-BQ-5888     TCGA-BQ-5889 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-5890     TCGA-BQ-5891     TCGA-BQ-5892     TCGA-BQ-5894 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-7044     TCGA-BQ-7045     TCGA-BQ-7046     TCGA-BQ-7048 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-7049     TCGA-BQ-7050     TCGA-BQ-7051     TCGA-BQ-7053 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-7055     TCGA-BQ-7056     TCGA-BQ-7058     TCGA-BQ-7059 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-BQ-7060     TCGA-BQ-7061     TCGA-BQ-7062     TCGA-DW-5560 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DW-5561     TCGA-DW-7834     TCGA-DW-7837     TCGA-DW-7838 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DW-7839     TCGA-DW-7841     TCGA-DW-7842     TCGA-DZ-6131 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-DZ-6132     TCGA-DZ-6133     TCGA-DZ-6134     TCGA-DZ-6135 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-EV-5901     TCGA-EV-5902     TCGA-EV-5903     TCGA-G7-6789 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-G7-6790     TCGA-G7-6792     TCGA-G7-6793     TCGA-G7-6795 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-G7-6796     TCGA-G7-6797     TCGA-G7-7501     TCGA-G7-7502 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-GL-6846     TCGA-GL-7773     TCGA-GL-7966     TCGA-HE-7128 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
    TCGA-HE-7129     TCGA-HE-7130     TCGA-J7-6720 
"IL32 WILD-TYPE" "IL32 WILD-TYPE" "IL32 WILD-TYPE" 
D3V5, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             23
  CLUS_3            0             25
D3V6, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             34
  CLUS_3            0             21
D3V7, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            1             22
  CLUS_2            0             32
  CLUS_3            1             27
  CLUS_4            2             15
D3V8, multiclass
        clus
vv       IL32 MUTATED IL32 WILD-TYPE
  CLUS_1            2             23
  CLUS_2            1             37
  CLUS_3            0             11
  CLUS_4            1             25

Clustering(4) Variable = PCF11 MUTATION ANALYSIS
D4V1, binary
                 cls
clus              0 1
  PCF11 MUTATED   0 1
  PCF11 WILD-TYPE 7 7
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCF11 MUTATED      0    1
  PCF11 WILD-TYPE    7    7
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             0               7
  CLUS_2             1               7
D4V2, multiclass
[1] "Remove cluster labels:" "PCF11 MUTATED"         
clus
  PCF11 MUTATED PCF11 WILD-TYPE 
              1              14 
     TCGA-AL-3466      TCGA-AL-3467      TCGA-AL-3468      TCGA-AL-3472 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-AL-3473      TCGA-B3-3925      TCGA-B3-3926      TCGA-B3-4103 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B3-4104      TCGA-B9-4113      TCGA-B9-4114      TCGA-B9-4115 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
     TCGA-B9-4116      TCGA-B9-4117 
"PCF11 WILD-TYPE" "PCF11 WILD-TYPE" 
D4V3, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             0              18
  CLUS_2             1              15
  CLUS_3             1              25
  CLUS_4             5              35
D4V4, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             3              18
  CLUS_2             2              25
  CLUS_3             1              36
D4V5, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              24
  CLUS_3             5              20
D4V6, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             1              17
  CLUS_2             3              33
  CLUS_3             3              18
D4V7, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             3              20
  CLUS_2             3              29
  CLUS_3             1              27
  CLUS_4             0              17
D4V8, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             2              23
  CLUS_2             2              36
  CLUS_3             1              10
  CLUS_4             2              24

Clustering(5) Variable = SFRS2IP MUTATION ANALYSIS
D5V1, binary
                   cls
clus                0 1
  SFRS2IP MUTATED   0 0
  SFRS2IP WILD-TYPE 7 8
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SFRS2IP MUTATED      0    0
  SFRS2IP WILD-TYPE    7    8
D5V2, multiclass
D5V3, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               2                16
  CLUS_2               1                15
  CLUS_3               0                26
  CLUS_4               2                38
D5V4, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               2                19
  CLUS_2               2                25
  CLUS_3               1                36
D5V5, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                21
  CLUS_3               0                25
D5V6, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                17
  CLUS_2               1                35
  CLUS_3               2                19
D5V7, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                22
  CLUS_2               3                29
  CLUS_3               0                28
  CLUS_4               1                16
D5V8, multiclass
        clus
vv       SFRS2IP MUTATED SFRS2IP WILD-TYPE
  CLUS_1               1                24
  CLUS_2               3                35
  CLUS_3               0                11
  CLUS_4               1                25

Clustering(6) Variable = NF2 MUTATION ANALYSIS
D6V1, binary
               cls
clus            0 1
  NF2 MUTATED   0 0
  NF2 WILD-TYPE 7 8
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF2 MUTATED      0    0
  NF2 WILD-TYPE    7    8
D6V2, multiclass
D6V3, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            18
  CLUS_2           0            16
  CLUS_3           4            22
  CLUS_4           2            38
D6V4, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            21
  CLUS_2           4            23
  CLUS_3           2            35
D6V5, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           2            24
  CLUS_2           3            21
  CLUS_3           0            25
D6V6, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           3            15
  CLUS_2           2            34
  CLUS_3           0            21
D6V7, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           0            23
  CLUS_2           2            30
  CLUS_3           2            26
  CLUS_4           2            15
D6V8, multiclass
        clus
vv       NF2 MUTATED NF2 WILD-TYPE
  CLUS_1           1            24
  CLUS_2           3            35
  CLUS_3           0            11
  CLUS_4           2            24

Clustering(7) Variable = LGI4 MUTATION ANALYSIS
D7V1, binary
                cls
clus             0 1
  LGI4 MUTATED   0 0
  LGI4 WILD-TYPE 7 8
[1] "tbl2"
                cls
clus             [,1] [,2]
  LGI4 MUTATED      0    0
  LGI4 WILD-TYPE    7    8
D7V2, multiclass
D7V3, multiclass
        clus
vv       LGI4 MUTATED LGI4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            1             15
  CLUS_3            1             25
  CLUS_4            1             39
D7V4, multiclass
        clus
vv       LGI4 MUTATED LGI4 WILD-TYPE
  CLUS_1            1             20
  CLUS_2            2             25
  CLUS_3            1             36
D7V5, multiclass
        clus
vv       LGI4 MUTATED LGI4 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             22
  CLUS_3            1             24
D7V6, multiclass
        clus
vv       LGI4 MUTATED LGI4 WILD-TYPE
  CLUS_1            1             17
  CLUS_2            2             34
  CLUS_3            1             20
D7V7, multiclass
        clus
vv       LGI4 MUTATED LGI4 WILD-TYPE
  CLUS_1            0             23
  CLUS_2            4             28
  CLUS_3            0             28
  CLUS_4            0             17
D7V8, multiclass
        clus
vv       LGI4 MUTATED LGI4 WILD-TYPE
  CLUS_1            0             25
  CLUS_2            3             35
  CLUS_3            1             10
  CLUS_4            0             26
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
