cnv2cluster1 sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/LUSC-TP/2662124/all_lesions.conf_99.txt |
Correlate_Clinical_Cnvs_onlysig2 clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2587688/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt |
Correlate_Clinical_Cnvs_onlysig2 filter cluster smaller than | 3 |
Correlate_Clinical_Cnvs_onlysig2 output name | LUSC-TP |
Correlate_Clinical_Cnvs_onlysig2 figure height | 5 |
Correlate_Clinical_Cnvs_onlysig2 figure width | 9 |
Correlate_Clinical_Cnvs_onlysig2 survival legend position | OUT |
Correlate_Clinical_Cnvs_onlysig2 pvalue cutoff | 1 |
Correlate_Clinical_Cnvs_onlysig2 qvalue cutoff | 0.25 |
Correlate_Clinical_Cnvs_onlysig2 make figure | ONLYSIG |
Correlate_Clinical_Cnvs_onlysig2 nozzle ver | Nozzle.R1 |
Execution Times: | |
Submitted: | 01:27:11 29-03-13 |
Completed: | |
Elapsed: | 00 hrs 02 mins 12 secs |
step 1. cnv2cluster [id: 351843] Convert mutsig results to cluster files
urn:lsid:broadinstitute.org:cancer.genome.analysis:00494:12
sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/Gistic2_Analysis/LUSC-TP/2662124/all_lesions.conf_99.txt |
maf file | |
sig gene file | |
sig gene q cutoff | 0.01 |
output name |
Output Files: | |
all_lesions.conf_99.cnv.cluster.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 01:27:11 29-03-13 |
Completed: | 01:27:41 29-03-13 |
Elapsed: | 00 hrs 00 mins 29 secs |
step 2. Correlate_Clinical_Cnvs_onlysig [id: 351844]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00495:47
cluster label file | all_lesions.conf_99.cnv.cluster.txt |
clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2587688/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt |
features used | ALL |
filter cluster smaller than | 3 |
output name | LUSC-TP |
figure height | 5 |
figure width | 9 |
survival legend position | OUT |
pvalue cutoff | 1 |
qvalue cutoff | 0.25 |
make figure | ONLYSIG |
nozzle ver | Nozzle.R1 |
options | MUTSIG |
report title | |
job description |
Output Files: | |
D66V11.png | |
D66V11.pdf | |
test_dim_tbl.txt | |
table.1.txt | |
nozzle.RData | |
nozzle.html | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 01:27:11 29-03-13 |
Completed: | 01:29:23 29-03-13 |
Elapsed: | 00 hrs 02 mins 11 secs |