mutsig2cluster_new1 sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/LUSC-TP/2662451/LUSC-TP.sample_sig_gene_table.txt |
Correlate_Cluster_mutation_onlysig2 clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUSC-TP/2666774/1.GDAC_mergedClustering.Finished/LUSC-TP.transferedmergedcluster.txt |
Correlate_Cluster_mutation_onlysig2 filter cluster smaller than | 3 |
Correlate_Cluster_mutation_onlysig2 output name | LUSC-TP |
Correlate_Cluster_mutation_onlysig2 figure height | 5 |
Correlate_Cluster_mutation_onlysig2 figure width | 9 |
Correlate_Cluster_mutation_onlysig2 survival legend position | OUT |
Correlate_Cluster_mutation_onlysig2 pvalue cutoff | 0.05 |
Correlate_Cluster_mutation_onlysig2 qvalue cutoff | 0.25 |
Correlate_Cluster_mutation_onlysig2 make figure | ONLYSIG |
Correlate_Cluster_mutation_onlysig2 nozzle ver | Nozzle.R1 |
Execution Times: | |
Submitted: | 07:26:39 05-03-13 |
Completed: | |
Elapsed: | 00 hrs 01 mins 21 secs |
step 1. mutsig2cluster_new [id: 335994] Convert mutsig results to cluster files
urn:lsid:broadinstitute.org:cancer.genome.analysis:00336:4
sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/LUSC-TP/2662451/LUSC-TP.sample_sig_gene_table.txt |
maf file | |
sig gene file | |
sig gene q cutoff | 0.01 |
output name |
Output Files: | |
LUSC-TP.mutsig.cluster.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 07:26:42 05-03-13 |
Completed: | 07:27:14 05-03-13 |
Elapsed: | 00 hrs 00 mins 32 secs |
step 2. Correlate_Cluster_mutation_onlysig [id: 335996]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00503:3
cluster label file | LUSC-TP.mutsig.cluster.txt |
clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUSC-TP/2666774/1.GDAC_mergedClustering.Finished/LUSC-TP.transferedmergedcluster.txt |
features used | ALL |
filter cluster smaller than | 3 |
output name | LUSC-TP |
figure height | 5 |
figure width | 9 |
survival legend position | OUT |
pvalue cutoff | 0.05 |
qvalue cutoff | 0.25 |
make figure | ONLYSIG |
nozzle ver | Nozzle.R1 |
options | MUTSIG |
report title | |
job description |
Output Files: | |
D3V10.pdf | |
D3V8.pdf | |
D3V1.png | |
D3V8.png | |
D3V2.png | |
D3V2.pdf | |
D3V10.png | |
D3V7.pdf | |
D3V1.pdf | |
D3V7.png | |
D4V3.pdf | |
D6V2.pdf | |
D6V2.png | |
D4V3.png | |
table.1.txt | |
nozzle.RData | |
nozzle.html | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 07:26:42 05-03-13 |
Completed: | 07:27:59 05-03-13 |
Elapsed: | 00 hrs 01 mins 16 secs |