
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/335783/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/OV-TP/2667979/1.GDAC_mergedClustering.Finished/OV-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=OV-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oT=OV-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=586, in cluster file=559, common to both=559
[1]  80 559
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              101               458 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              101               458 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              154               405 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              154               405 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              125               434 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              125               434 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               99               460 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               99               460 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              106               453 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              106               453 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              206               353 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              206               353 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               30               529 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               30               529 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               17               542 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               17               542 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              142               417 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              142               417 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               32               527 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               32               527 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              122               437 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              122               437 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               498 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               498 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              122               437 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              122               437 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              147               412 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              147               412 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               86               473 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               86               473 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              203               356 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              203               356 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               61               498 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               61               498 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               533 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               533 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               133                426 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               133                426 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                68                491 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                68                491 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                41                518 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                41                518 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                60                499 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                60                499 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               202                357 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               202                357 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               116                443 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               116                443 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                39                520 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                39                520 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                34                525 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                34                525 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                535 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                24                535 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                32                527 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                32                527 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                16                543 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                16                543 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                549 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                549 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                536 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                536 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                73                486 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                73                486 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                41                518 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                41                518 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                99                460 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                99                460 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                91                468 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                91                468 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               231                328 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               231                328 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               268                291 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               268                291 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                67                492 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                67                492 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                550 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                550 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               526 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               33               526 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               35               524 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               35               524 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               537 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               537 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               533 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               26               533 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               529 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               529 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               60               499 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               60               499 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               536 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               536 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              254               305 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              254               305 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              294               265 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              294               265 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               84               475 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               84               475 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              169               390 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              169               390 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              121               438 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              121               438 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              192               367 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              192               367 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               91               468 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               91               468 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               48               511 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               48               511 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              229               330 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              229               330 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               62               497 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               62               497 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              207               352 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              207               352 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              235               324 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              235               324 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                63                496 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                63                496 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                87                472 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                87                472 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               142                417 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               142                417 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               105                454 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               105                454 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                50                509 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                50                509 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                74                485 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                74                485 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               256                303 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               256                303 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               162                397 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               162                397 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               218                341 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               218                341 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               263                296 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               263                296 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               350                209 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               350                209 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               420                139 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               420                139 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               323                236 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               323                236 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               182                377 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               182                377 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               228                331 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               228                331 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               140                419 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               140                419 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               140                419 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               140                419 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                37                522 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                37                522 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                21                538 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                21                538 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               148                411 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               148                411 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               378                181 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               378                181 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              102               457 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
              102               457 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 12 rows and 559 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 559 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              31               184
  CLUS_2              48               165
  CLUS_3              22               107
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              48               185
  CLUS_2              33               166
  CLUS_3              20               105
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              30               129
  CLUS_2              21               143
  CLUS_3              49               183
D1V4, multiclass
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              24               139
  CLUS_2              34               175
  CLUS_3              43               144
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              31               136
  CLUS_2              32               139
  CLUS_3              38               182
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              16               108
  CLUS_2              41               163
  CLUS_3              14                56
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              22                76
  CLUS_2              10                55
  CLUS_3              19               122
  CLUS_4              20                74
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              21                77
  CLUS_2              18                52
  CLUS_3              16                75
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              26                77
  CLUS_2              18                88
  CLUS_3              11                39
D1V11, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14                96
  CLUS_2              45               147
  CLUS_3              29               117
D1V12, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                 0
  CLUS_2              29               124
  CLUS_3              56               236

Clustering(2) Variable = 1q gain mutation analysis
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              64               151
  CLUS_2              59               154
  CLUS_3              31                98
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              59               174
  CLUS_2              61               138
  CLUS_3              34                91
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              44               115
  CLUS_2              42               122
  CLUS_3              67               165
D2V4, multiclass
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              35               128
  CLUS_2              41               168
  CLUS_3              78               109
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              55               112
  CLUS_2              45               126
  CLUS_3              54               166
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              32                92
  CLUS_2              64               140
  CLUS_3              18                52
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              30                68
  CLUS_2              17                48
  CLUS_3              35               106
  CLUS_4              32                62
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              28                70
  CLUS_2              24                46
  CLUS_3              31                60
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              32                71
  CLUS_2              35                71
  CLUS_3              16                34
D2V11, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              26                84
  CLUS_2              63               129
  CLUS_3              43               103
D2V12, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                 0
  CLUS_2              48               105
  CLUS_3              81               211

Clustering(3) Variable = 2p gain mutation analysis
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              76               139
  CLUS_2              23               190
  CLUS_3              26               103
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              34               199
  CLUS_2              77               122
  CLUS_3              14               111
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              33               126
  CLUS_2              35               129
  CLUS_3              57               175
D3V4, multiclass
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              24               139
  CLUS_2              26               183
  CLUS_3              75               112
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              69                98
  CLUS_2              32               139
  CLUS_3              24               196
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              22               102
  CLUS_2              59               145
  CLUS_3              11                59
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              19                79
  CLUS_2              13                52
  CLUS_3              28               113
  CLUS_4              32                62
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              20                78
  CLUS_2               7                63
  CLUS_3              35                56
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              17                86
  CLUS_2              37                69
  CLUS_3               8                42
D3V11, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              26                84
  CLUS_2              40               152
  CLUS_3              38               108
D3V12, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                 1
  CLUS_2              41               112
  CLUS_3              61               231

Clustering(4) Variable = 2q gain mutation analysis
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              61               154
  CLUS_2              21               192
  CLUS_3              17               112
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              26               207
  CLUS_2              59               140
  CLUS_3              14               111
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              25               134
  CLUS_2              29               135
  CLUS_3              45               187
D4V4, multiclass
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              17               146
  CLUS_2              21               188
  CLUS_3              61               126
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              53               114
  CLUS_2              22               149
  CLUS_3              24               196
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              15               109
  CLUS_2              46               158
  CLUS_3               8                62
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              17                81
  CLUS_2              13                52
  CLUS_3              19               122
  CLUS_4              20                74
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              15                83
  CLUS_2               5                65
  CLUS_3              27                64
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11                92
  CLUS_2              31                75
  CLUS_3               5                45
D4V11, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              16                94
  CLUS_2              35               157
  CLUS_3              29               117
D4V12, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                 1
  CLUS_2              30               123
  CLUS_3              48               244

Clustering(5) Variable = 3p gain mutation analysis
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              35               180
  CLUS_2              45               168
  CLUS_3              26               103
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              50               183
  CLUS_2              40               159
  CLUS_3              16               109
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              39               120
  CLUS_2              30               134
  CLUS_3              37               195
D5V4, multiclass
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              23               140
  CLUS_2              36               173
  CLUS_3              47               140
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              34               133
  CLUS_2              32               139
  CLUS_3              40               180
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              27                97
  CLUS_2              33               171
  CLUS_3              19                51
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              17                81
  CLUS_2               8                57
  CLUS_3              33               108
  CLUS_4              21                73
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              21                77
  CLUS_2              16                54
  CLUS_3              14                77
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              20                83
  CLUS_2              20                86
  CLUS_3              11                39
D5V11, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              18                92
  CLUS_2              39               153
  CLUS_3              31               115
D5V12, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              35               118
  CLUS_3              53               239

Clustering(6) Variable = 3q gain mutation analysis
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              80               135
  CLUS_2              76               137
  CLUS_3              49                80
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              88               145
  CLUS_2              87               112
  CLUS_3              30                95
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              60                99
  CLUS_2              63               101
  CLUS_3              82               150
D6V4, multiclass
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              42               121
  CLUS_2              63               146
  CLUS_3             101                86
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              79                88
  CLUS_2              58               113
  CLUS_3              68               152
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              49                75
  CLUS_2              70               134
  CLUS_3              27                43
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              34                64
  CLUS_2              16                49
  CLUS_3              56                85
  CLUS_4              40                54
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              33                65
  CLUS_2              24                46
  CLUS_3              37                54
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              33                70
  CLUS_2              44                62
  CLUS_3              17                33
D6V11, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              45                65
  CLUS_2              64               128
  CLUS_3              56                90
D6V12, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              63                90
  CLUS_3             101               191

Clustering(7) Variable = 4p gain mutation analysis
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13               202
  CLUS_2              11               202
  CLUS_3               6               123
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14               219
  CLUS_2              12               187
  CLUS_3               4               121
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3               156
  CLUS_2               6               158
  CLUS_3              21               211
D7V4, multiclass
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4               159
  CLUS_2              15               194
  CLUS_3              11               176
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14               153
  CLUS_2               5               166
  CLUS_3              11               209
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3               121
  CLUS_2              14               190
  CLUS_3               1                69
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               7                91
  CLUS_2               1                64
  CLUS_3               5               136
  CLUS_4               5                89
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               8                90
  CLUS_2               4                66
  CLUS_3               6                85
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               9                94
  CLUS_2               7                99
  CLUS_3               2                48
D7V11, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               9               101
  CLUS_2              14               178
  CLUS_3               6               140
D7V12, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                 1
  CLUS_2               7               146
  CLUS_3              20               272

Clustering(8) Variable = 4q gain mutation analysis
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               7               208
  CLUS_2               7               206
  CLUS_3               3               126
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               7               226
  CLUS_2               7               192
  CLUS_3               3               122
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4               155
  CLUS_2               4               160
  CLUS_3               9               223
D8V4, multiclass
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2               161
  CLUS_2               8               201
  CLUS_3               7               180
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              10               157
  CLUS_2               3               168
  CLUS_3               4               216
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2               122
  CLUS_2              10               194
  CLUS_3               0                70
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4                94
  CLUS_2               1                64
  CLUS_3               2               139
  CLUS_4               5                89
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3                95
  CLUS_2               2                68
  CLUS_3               4                87
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               5                98
  CLUS_2               4               102
  CLUS_3               0                50
D8V11, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               7               103
  CLUS_2               7               185
  CLUS_3               1               145
D8V12, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                 3
  CLUS_2               2               151
  CLUS_3              13               279

Clustering(9) Variable = 5p gain mutation analysis
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              52               163
  CLUS_2              52               161
  CLUS_3              37                92
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              64               169
  CLUS_2              53               146
  CLUS_3              24               101
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              43               116
  CLUS_2              44               120
  CLUS_3              54               178
D9V4, multiclass
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              19               144
  CLUS_2              61               148
  CLUS_3              62               125
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              49               118
  CLUS_2              40               131
  CLUS_3              53               167
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              37                87
  CLUS_2              52               152
  CLUS_3              12                58
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              22                76
  CLUS_2              11                54
  CLUS_3              39               102
  CLUS_4              29                65
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              27                71
  CLUS_2              19                51
  CLUS_3              19                72
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              26                77
  CLUS_2              26                80
  CLUS_3              13                37
D9V11, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              21                89
  CLUS_2              62               130
  CLUS_3              30               116
D9V12, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              35               118
  CLUS_3              78               214

Clustering(10) Variable = 5q gain mutation analysis
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6               209
  CLUS_2              15               198
  CLUS_3              11               118
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              19               214
  CLUS_2               7               192
  CLUS_3               6               119
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              12               147
  CLUS_2               9               155
  CLUS_3              11               221
D10V4, multiclass
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8               155
  CLUS_2              14               195
  CLUS_3              10               177
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               6               161
  CLUS_2              13               158
  CLUS_3              13               207
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3               121
  CLUS_2              16               188
  CLUS_3               4                66
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               5                93
  CLUS_2               3                62
  CLUS_3               7               134
  CLUS_4               8                86
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                91
  CLUS_2               3                67
  CLUS_3               2                89
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                96
  CLUS_2               3               103
  CLUS_3               2                48
D10V11, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1               109
  CLUS_2              17               175
  CLUS_3               4               142
D10V12, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                 3
  CLUS_2               5               148
  CLUS_3              17               275

Clustering(11) Variable = 6p gain mutation analysis
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              52               163
  CLUS_2              45               168
  CLUS_3              24               105
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              49               184
  CLUS_2              55               144
  CLUS_3              17               108
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              33               126
  CLUS_2              38               126
  CLUS_3              50               182
D11V4, multiclass
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              16               147
  CLUS_2              45               164
  CLUS_3              61               126
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              56               111
  CLUS_2              26               145
  CLUS_3              40               180
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              27                97
  CLUS_2              46               158
  CLUS_3               9                61
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              18                80
  CLUS_2              10                55
  CLUS_3              29               112
  CLUS_4              25                69
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              22                76
  CLUS_2              14                56
  CLUS_3              29                62
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              22                81
  CLUS_2              32                74
  CLUS_3              11                39
D11V11, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              26                84
  CLUS_2              37               155
  CLUS_3              38               108
D11V12, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              41               112
  CLUS_3              59               233

Clustering(12) Variable = 6q gain mutation analysis
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              26               189
  CLUS_2              22               191
  CLUS_3              13               116
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              23               210
  CLUS_2              31               168
  CLUS_3               7               118
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              17               142
  CLUS_2              17               147
  CLUS_3              27               205
D12V4, multiclass
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7               156
  CLUS_2              21               188
  CLUS_3              33               154
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              34               133
  CLUS_2               9               162
  CLUS_3              18               202
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              13               111
  CLUS_2              25               179
  CLUS_3               4                66
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              10                88
  CLUS_2               7                58
  CLUS_3              12               129
  CLUS_4              13                81
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11                87
  CLUS_2               4                66
  CLUS_3              19                72
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11                92
  CLUS_2              19                87
  CLUS_3               4                46
D12V11, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              13                97
  CLUS_2              23               169
  CLUS_3              17               129
D12V12, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              20               133
  CLUS_3              33               259

Clustering(13) Variable = 7p gain mutation analysis
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              56               159
  CLUS_2              41               172
  CLUS_3              25               104
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              44               189
  CLUS_2              53               146
  CLUS_3              25               100
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              35               124
  CLUS_2              26               138
  CLUS_3              60               172
D13V4, multiclass
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              24               139
  CLUS_2              27               182
  CLUS_3              71               116
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              61               106
  CLUS_2              25               146
  CLUS_3              36               184
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              22               102
  CLUS_2              52               152
  CLUS_3              13                57
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              22                76
  CLUS_2              16                49
  CLUS_3              24               117
  CLUS_4              25                69
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              14                84
  CLUS_2               8                62
  CLUS_3              23                68
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              14                89
  CLUS_2              22                84
  CLUS_3               9                41
D13V11, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                89
  CLUS_2              40               152
  CLUS_3              30               116
D13V12, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              30               123
  CLUS_3              60               232

Clustering(14) Variable = 7q gain mutation analysis
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              67               148
  CLUS_2              53               160
  CLUS_3              27               102
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              56               177
  CLUS_2              60               139
  CLUS_3              31                94
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              46               113
  CLUS_2              37               127
  CLUS_3              63               169
D14V4, multiclass
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              30               133
  CLUS_2              40               169
  CLUS_3              77               110
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              64               103
  CLUS_2              34               137
  CLUS_3              49               171
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              26                98
  CLUS_2              61               143
  CLUS_3              16                54
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              31                67
  CLUS_2              16                49
  CLUS_3              27               114
  CLUS_4              29                65
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18                80
  CLUS_2               9                61
  CLUS_3              23                68
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              19                84
  CLUS_2              22                84
  CLUS_3               9                41
D14V11, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              21                89
  CLUS_2              51               141
  CLUS_3              39               107
D14V12, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              39               114
  CLUS_3              71               221

Clustering(15) Variable = 8p gain mutation analysis
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              37               178
  CLUS_2              27               186
  CLUS_3              22               107
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              32               201
  CLUS_2              39               160
  CLUS_3              15               110
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              24               135
  CLUS_2              25               139
  CLUS_3              37               195
D15V4, multiclass
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              22               141
  CLUS_2              37               172
  CLUS_3              27               160
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              25               142
  CLUS_2              28               143
  CLUS_3              33               187
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              17               107
  CLUS_2              27               177
  CLUS_3              12                58
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                89
  CLUS_2              10                55
  CLUS_3              26               115
  CLUS_4              11                83
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              13                85
  CLUS_2              14                56
  CLUS_3              12                79
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                91
  CLUS_2              17                89
  CLUS_3              10                40
D15V11, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              15                95
  CLUS_2              36               156
  CLUS_3              20               126
D15V12, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              21               132
  CLUS_3              49               243

Clustering(16) Variable = 8q gain mutation analysis
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              74               141
  CLUS_2              72               141
  CLUS_3              57                72
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              91               142
  CLUS_2              72               127
  CLUS_3              40                85
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              67                92
  CLUS_2              60               104
  CLUS_3              76               156
D16V4, multiclass
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              51               112
  CLUS_2              92               117
  CLUS_3              60               127
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              61               106
  CLUS_2              64               107
  CLUS_3              78               142
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              44                80
  CLUS_2              67               137
  CLUS_3              28                42
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              25                73
  CLUS_2              25                40
  CLUS_3              57                84
  CLUS_4              32                62
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              43                55
  CLUS_2              36                34
  CLUS_3              24                67
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              44                59
  CLUS_2              37                69
  CLUS_3              22                28
D16V11, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              46                64
  CLUS_2              70               122
  CLUS_3              52                94
D16V12, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              56                97
  CLUS_3             111               181

Clustering(17) Variable = 9p gain mutation analysis
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               194
  CLUS_2              32               181
  CLUS_3               8               121
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              28               205
  CLUS_2              23               176
  CLUS_3              10               115
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               138
  CLUS_2              13               151
  CLUS_3              27               205
D17V4, multiclass
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10               153
  CLUS_2              25               184
  CLUS_3              26               161
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              24               143
  CLUS_2              10               161
  CLUS_3              27               193
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              14               110
  CLUS_2              27               177
  CLUS_3               4                66
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10                88
  CLUS_2               6                59
  CLUS_3              13               128
  CLUS_4              16                78
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              14                84
  CLUS_2              10                60
  CLUS_3              11                80
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              15                88
  CLUS_2              15                91
  CLUS_3               5                45
D17V11, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              11                99
  CLUS_2              28               164
  CLUS_3              12               134
D17V12, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              15               138
  CLUS_3              36               256

Clustering(18) Variable = 9q gain mutation analysis
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7               208
  CLUS_2              11               202
  CLUS_3               8               121
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15               218
  CLUS_2               7               192
  CLUS_3               4               121
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              11               148
  CLUS_2               9               155
  CLUS_3               6               226
D18V4, multiclass
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3               160
  CLUS_2              13               196
  CLUS_3              10               177
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5               162
  CLUS_2               6               165
  CLUS_3              15               205
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5               119
  CLUS_2              12               192
  CLUS_3               2                68
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                96
  CLUS_2               1                64
  CLUS_3               7               134
  CLUS_4               9                85
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                90
  CLUS_2               5                65
  CLUS_3               4                87
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                95
  CLUS_2               6               100
  CLUS_3               3                47
D18V11, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6               104
  CLUS_2              11               181
  CLUS_3               6               140
D18V12, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                 3
  CLUS_2               7               146
  CLUS_3              16               276

Clustering(19) Variable = 10p gain mutation analysis
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               66                149
  CLUS_2               38                175
  CLUS_3               29                100
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               54                179
  CLUS_2               65                134
  CLUS_3               14                111
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               37                122
  CLUS_2               36                128
  CLUS_3               59                173
D19V4, multiclass
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               20                143
  CLUS_2               39                170
  CLUS_3               74                113
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               57                110
  CLUS_2               35                136
  CLUS_3               41                179
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               26                 98
  CLUS_2               54                150
  CLUS_3               15                 55
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               25                 73
  CLUS_2                9                 56
  CLUS_3               35                106
  CLUS_4               26                 68
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               24                 74
  CLUS_2                8                 62
  CLUS_3               30                 61
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               24                 79
  CLUS_2               30                 76
  CLUS_3                8                 42
D19V11, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               25                 85
  CLUS_2               50                142
  CLUS_3               32                114
D19V12, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               37                116
  CLUS_3               70                222

Clustering(20) Variable = 10q gain mutation analysis
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               38                177
  CLUS_2               20                193
  CLUS_3               10                119
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               25                208
  CLUS_2               36                163
  CLUS_3                7                118
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               19                140
  CLUS_2               19                145
  CLUS_3               30                202
D20V4, multiclass
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               13                150
  CLUS_2               24                185
  CLUS_3               31                156
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               28                139
  CLUS_2               22                149
  CLUS_3               18                202
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               15                109
  CLUS_2               28                176
  CLUS_3                6                 64
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               14                 84
  CLUS_2                4                 61
  CLUS_3               17                124
  CLUS_4               14                 80
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               11                 87
  CLUS_2                4                 66
  CLUS_3               17                 74
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               11                 92
  CLUS_2               18                 88
  CLUS_3                3                 47
D20V11, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               10                100
  CLUS_2               25                167
  CLUS_3               18                128
D20V12, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               21                132
  CLUS_3               32                260

Clustering(21) Variable = 11p gain mutation analysis
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               18                197
  CLUS_2               17                196
  CLUS_3                6                123
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               14                219
  CLUS_2               16                183
  CLUS_3               11                114
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                150
  CLUS_2               10                154
  CLUS_3               22                210
D21V4, multiclass
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                157
  CLUS_2               18                191
  CLUS_3               17                170
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               17                150
  CLUS_2                5                166
  CLUS_3               19                201
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                121
  CLUS_2               18                186
  CLUS_3                2                 68
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               12                 86
  CLUS_2                4                 61
  CLUS_3                4                137
  CLUS_4                3                 91
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               12                 86
  CLUS_2                5                 65
  CLUS_3                3                 88
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               11                 92
  CLUS_2                4                102
  CLUS_3                5                 45
D21V11, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                8                102
  CLUS_2               18                174
  CLUS_3                6                140
D21V12, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                8                145
  CLUS_3               24                268

Clustering(22) Variable = 11q gain mutation analysis
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               21                194
  CLUS_2               28                185
  CLUS_3               11                118
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               23                210
  CLUS_2               22                177
  CLUS_3               15                110
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               16                143
  CLUS_2               17                147
  CLUS_3               27                205
D22V4, multiclass
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                157
  CLUS_2               30                179
  CLUS_3               24                163
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               22                145
  CLUS_2                7                164
  CLUS_3               31                189
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                115
  CLUS_2               23                181
  CLUS_3                5                 65
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               12                 86
  CLUS_2                4                 61
  CLUS_3               13                128
  CLUS_4                8                 86
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               15                 83
  CLUS_2               11                 59
  CLUS_3                8                 83
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               13                 90
  CLUS_2                9                 97
  CLUS_3               12                 38
D22V11, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                8                102
  CLUS_2               24                168
  CLUS_3               17                129
D22V12, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               20                133
  CLUS_3               29                263

Clustering(23) Variable = 12p gain mutation analysis
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1              102                113
  CLUS_2               60                153
  CLUS_3               40                 89
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               70                163
  CLUS_2               98                101
  CLUS_3               34                 91
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               51                108
  CLUS_2               66                 98
  CLUS_3               84                148
D23V4, multiclass
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               37                126
  CLUS_2               55                154
  CLUS_3              110                 77
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               93                 74
  CLUS_2               53                118
  CLUS_3               56                164
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               45                 79
  CLUS_2               77                127
  CLUS_3               19                 51
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               32                 66
  CLUS_2               19                 46
  CLUS_3               52                 89
  CLUS_4               38                 56
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               24                 74
  CLUS_2               20                 50
  CLUS_3               50                 41
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               24                 79
  CLUS_2               55                 51
  CLUS_3               15                 35
D23V11, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               39                 71
  CLUS_2               61                131
  CLUS_3               61                 85
D23V12, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               65                 88
  CLUS_3               95                197

Clustering(24) Variable = 12q gain mutation analysis
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               62                153
  CLUS_2               35                178
  CLUS_3               19                110
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               34                199
  CLUS_2               64                135
  CLUS_3               18                107
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               33                126
  CLUS_2               30                134
  CLUS_3               53                179
D24V4, multiclass
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               26                137
  CLUS_2               17                192
  CLUS_3               73                114
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               56                111
  CLUS_2               25                146
  CLUS_3               35                185
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               20                104
  CLUS_2               49                155
  CLUS_3                8                 62
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               19                 79
  CLUS_2                9                 56
  CLUS_3               23                118
  CLUS_4               26                 68
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               13                 85
  CLUS_2               16                 54
  CLUS_3               32                 59
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               13                 90
  CLUS_2               38                 68
  CLUS_3               10                 40
D24V11, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               18                 92
  CLUS_2               34                158
  CLUS_3               39                107
D24V12, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               40                113
  CLUS_3               50                242

Clustering(25) Variable = 13q gain mutation analysis
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               19                196
  CLUS_2                7                206
  CLUS_3               13                116
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               14                219
  CLUS_2               19                180
  CLUS_3                6                119
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               11                148
  CLUS_2               10                154
  CLUS_3               17                215
D25V4, multiclass
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               13                150
  CLUS_2                7                202
  CLUS_3               19                168
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               22                145
  CLUS_2               11                160
  CLUS_3                6                214
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                117
  CLUS_2               13                191
  CLUS_3                5                 65
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 94
  CLUS_2                5                 60
  CLUS_3                9                132
  CLUS_4                7                 87
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                 91
  CLUS_2                3                 67
  CLUS_3                9                 82
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                 96
  CLUS_2               10                 96
  CLUS_3                2                 48
D25V11, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               11                 99
  CLUS_2                9                183
  CLUS_3               12                134
D25V12, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               14                139
  CLUS_3               18                274

Clustering(26) Variable = 14q gain mutation analysis
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               21                194
  CLUS_2                6                207
  CLUS_3                7                122
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                223
  CLUS_2               19                180
  CLUS_3                5                120
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                8                151
  CLUS_2               14                150
  CLUS_3               12                220
D26V4, multiclass
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                153
  CLUS_2               13                196
  CLUS_3               11                176
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               15                152
  CLUS_2                9                162
  CLUS_3               10                210
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                120
  CLUS_2               17                187
  CLUS_3                2                 68
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               10                 88
  CLUS_2                5                 60
  CLUS_3                3                138
  CLUS_4                5                 89
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 94
  CLUS_2                4                 66
  CLUS_3               10                 81
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                4                 99
  CLUS_2               12                 94
  CLUS_3                2                 48
D26V11, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                104
  CLUS_2                8                184
  CLUS_3               11                135
D26V12, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               11                142
  CLUS_3               14                278

Clustering(27) Variable = 15q gain mutation analysis
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                206
  CLUS_2               12                201
  CLUS_3                3                126
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                223
  CLUS_2                7                192
  CLUS_3                7                118
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               10                149
  CLUS_2                5                159
  CLUS_3                9                223
D27V4, multiclass
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                158
  CLUS_2               13                196
  CLUS_3                6                181
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                5                162
  CLUS_2                7                164
  CLUS_3               12                208
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                118
  CLUS_2               11                193
  CLUS_3                0                 70
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 92
  CLUS_2                2                 63
  CLUS_3                5                136
  CLUS_4                4                 90
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                2                 68
  CLUS_3                3                 88
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                100
  CLUS_2                4                102
  CLUS_3                1                 49
D27V11, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                107
  CLUS_2                7                185
  CLUS_3                7                139
D27V12, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                8                145
  CLUS_3                9                283

Clustering(28) Variable = 16p gain mutation analysis
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               19                196
  CLUS_2                9                204
  CLUS_3                4                125
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                227
  CLUS_2               16                183
  CLUS_3               10                115
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                9                150
  CLUS_2               11                153
  CLUS_3               12                220
D28V4, multiclass
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                158
  CLUS_2               11                198
  CLUS_3               16                171
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               14                153
  CLUS_2                6                165
  CLUS_3               12                208
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                119
  CLUS_2               12                192
  CLUS_3                3                 67
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                6                 92
  CLUS_2                2                 63
  CLUS_3                3                138
  CLUS_4                9                 85
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 95
  CLUS_2                2                 68
  CLUS_3                3                 88
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                100
  CLUS_2                4                102
  CLUS_3                1                 49
D28V11, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                105
  CLUS_2                9                183
  CLUS_3                8                138
D28V12, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                9                144
  CLUS_3               13                279

Clustering(29) Variable = 16q gain mutation analysis
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               11                204
  CLUS_2                5                208
  CLUS_3                0                129
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                232
  CLUS_2                6                193
  CLUS_3                9                116
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                156
  CLUS_2                8                156
  CLUS_3                5                227
D29V4, multiclass
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                158
  CLUS_2                4                205
  CLUS_3                7                180
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                162
  CLUS_2                1                170
  CLUS_3               10                210
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                122
  CLUS_2                9                195
  CLUS_3                1                 69
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                7                 91
  CLUS_2                1                 64
  CLUS_3                2                139
  CLUS_4                2                 92
D29V9, multiclass
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                257 
        TCGA-04-1348         TCGA-04-1357         TCGA-04-1362 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1364         TCGA-04-1365         TCGA-04-1514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1519         TCGA-09-0366         TCGA-09-0367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-0369         TCGA-09-1662         TCGA-09-1666 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1673         TCGA-09-1674 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2051         TCGA-09-2054         TCGA-09-2056 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0928         TCGA-10-0936         TCGA-13-0730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0799         TCGA-13-0800         TCGA-13-0801 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0890         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0913         TCGA-13-0916 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0920         TCGA-13-0924         TCGA-13-1403 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1405         TCGA-13-1410         TCGA-13-1481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2060         TCGA-20-1682 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1683         TCGA-20-1684         TCGA-20-1685 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1023         TCGA-23-1026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1029         TCGA-23-1109 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1111         TCGA-23-1114         TCGA-23-1120 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1122         TCGA-23-1123         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2077         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-1103         TCGA-24-1413 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1416         TCGA-24-1417         TCGA-24-1418 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1419         TCGA-24-1423         TCGA-24-1424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1427         TCGA-24-1428         TCGA-24-1430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1436         TCGA-24-1467         TCGA-24-1469 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1474         TCGA-24-1544         TCGA-24-1548 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1567         TCGA-24-1603 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1846         TCGA-24-1847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1850         TCGA-24-1924         TCGA-24-1930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2033         TCGA-24-2035         TCGA-24-2036 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2038         TCGA-24-2254         TCGA-24-2261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2281         TCGA-24-2288         TCGA-24-2290 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2297         TCGA-24-2298         TCGA-25-1312 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1313         TCGA-25-1314         TCGA-25-1315 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1316         TCGA-25-1317         TCGA-25-1318 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1319         TCGA-25-1321         TCGA-25-1322 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1323         TCGA-25-1329         TCGA-25-1623 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1625         TCGA-25-1627         TCGA-25-1630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1631         TCGA-25-1632         TCGA-25-1633 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1634         TCGA-25-1635         TCGA-25-1870 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1871         TCGA-25-2391         TCGA-25-2392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2393         TCGA-25-2396         TCGA-25-2397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2399         TCGA-25-2400         TCGA-25-2404 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2409         TCGA-29-1688         TCGA-29-1690 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1691         TCGA-29-1693         TCGA-29-1694 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1695         TCGA-29-1696         TCGA-29-1697 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1699         TCGA-29-1701         TCGA-29-1702 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1703         TCGA-29-1705         TCGA-29-1710 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1770         TCGA-29-1776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1778         TCGA-29-1781         TCGA-29-1783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1784         TCGA-29-1785         TCGA-29-2414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1718         TCGA-30-1855         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1862         TCGA-30-1891         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1950         TCGA-31-1951         TCGA-31-1953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1956         TCGA-36-1568         TCGA-36-1570 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1571         TCGA-36-1574         TCGA-36-1575 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1577         TCGA-36-1578         TCGA-36-1580 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1581         TCGA-57-1582         TCGA-57-1583 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1993         TCGA-57-1994 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2350         TCGA-59-2351 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2352         TCGA-59-2355         TCGA-59-2363 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1724         TCGA-61-1725 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1733         TCGA-61-1736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1900         TCGA-61-1907 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1914         TCGA-61-1917 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2008 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2009         TCGA-61-2012         TCGA-61-2016 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2088         TCGA-61-2092         TCGA-61-2094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2104         TCGA-61-2109         TCGA-61-2110 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2111         TCGA-61-2113 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
D29V10, multiclass
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                257 
        TCGA-04-1348         TCGA-04-1357         TCGA-04-1362 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1364         TCGA-04-1365         TCGA-04-1514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1519         TCGA-09-0366         TCGA-09-0367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-0369         TCGA-09-1662         TCGA-09-1666 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1673         TCGA-09-1674 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2051         TCGA-09-2054         TCGA-09-2056 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0928         TCGA-10-0936         TCGA-13-0730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0799         TCGA-13-0800         TCGA-13-0801 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0890         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0913         TCGA-13-0916 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0920         TCGA-13-0924         TCGA-13-1403 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1405         TCGA-13-1410         TCGA-13-1481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1497         TCGA-13-1498         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2060         TCGA-20-1682 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1683         TCGA-20-1684         TCGA-20-1685 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1023         TCGA-23-1026 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1029         TCGA-23-1109 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1111         TCGA-23-1114         TCGA-23-1120 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1122         TCGA-23-1123         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2077         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-1103         TCGA-24-1413 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1416         TCGA-24-1417         TCGA-24-1418 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1419         TCGA-24-1423         TCGA-24-1424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1427         TCGA-24-1428         TCGA-24-1430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1436         TCGA-24-1467         TCGA-24-1469 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1474         TCGA-24-1544         TCGA-24-1548 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1567         TCGA-24-1603 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1846         TCGA-24-1847 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1850         TCGA-24-1924         TCGA-24-1930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2033         TCGA-24-2035         TCGA-24-2036 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2038         TCGA-24-2254         TCGA-24-2261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2281         TCGA-24-2288         TCGA-24-2290 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2297         TCGA-24-2298         TCGA-25-1312 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1313         TCGA-25-1314         TCGA-25-1315 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1316         TCGA-25-1317         TCGA-25-1318 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1319         TCGA-25-1321         TCGA-25-1322 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1323         TCGA-25-1329         TCGA-25-1623 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1625         TCGA-25-1627         TCGA-25-1630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1631         TCGA-25-1632         TCGA-25-1633 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1634         TCGA-25-1635         TCGA-25-1870 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1871         TCGA-25-2391         TCGA-25-2392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2393         TCGA-25-2396         TCGA-25-2397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2399         TCGA-25-2400         TCGA-25-2404 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2409         TCGA-29-1688         TCGA-29-1690 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1691         TCGA-29-1693         TCGA-29-1694 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1695         TCGA-29-1696         TCGA-29-1697 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1699         TCGA-29-1701         TCGA-29-1702 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1703         TCGA-29-1705         TCGA-29-1710 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1770         TCGA-29-1776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1778         TCGA-29-1781         TCGA-29-1783 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1784         TCGA-29-1785         TCGA-29-2414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2425         TCGA-29-2427         TCGA-29-2428 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1718         TCGA-30-1855         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1862         TCGA-30-1891         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1950         TCGA-31-1951         TCGA-31-1953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1956         TCGA-36-1568         TCGA-36-1570 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1571         TCGA-36-1574         TCGA-36-1575 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1577         TCGA-36-1578         TCGA-36-1580 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1581         TCGA-57-1582         TCGA-57-1583 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1584         TCGA-57-1993         TCGA-57-1994 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2348         TCGA-59-2350         TCGA-59-2351 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2352         TCGA-59-2355         TCGA-59-2363 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1721         TCGA-61-1724         TCGA-61-1725 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1733         TCGA-61-1736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1900         TCGA-61-1907 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1914         TCGA-61-1917 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2008 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2009         TCGA-61-2012         TCGA-61-2016 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2088         TCGA-61-2092         TCGA-61-2094 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2097         TCGA-61-2098         TCGA-61-2102 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2104         TCGA-61-2109         TCGA-61-2110 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2111         TCGA-61-2113 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
D29V11, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                110
  CLUS_2                5                187
  CLUS_3                5                141
D29V12, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                6                147
  CLUS_3                4                288

Clustering(30) Variable = 17p gain mutation analysis
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                6                209
  CLUS_2                3                210
  CLUS_3                1                128
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                229
  CLUS_2                6                193
  CLUS_3                0                125
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                158
  CLUS_2                4                160
  CLUS_3                5                227
D30V4, multiclass
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                162
  CLUS_2                5                204
  CLUS_3                4                183
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                5                162
  CLUS_2                1                170
  CLUS_3                4                216
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                122
  CLUS_2                6                198
  CLUS_3                0                 70
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                0                 65
  CLUS_3                3                138
  CLUS_4                3                 91
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 96
  CLUS_2                1                 69
  CLUS_3                5                 86
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                101
  CLUS_2                5                101
  CLUS_3                1                 49
D30V11, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                109
  CLUS_2                4                188
  CLUS_3                4                142
D30V12, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                5                148
  CLUS_3                4                288

Clustering(31) Variable = 17q gain mutation analysis
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                208
  CLUS_2                9                204
  CLUS_3                6                123
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               10                223
  CLUS_2               10                189
  CLUS_3                2                123
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                156
  CLUS_2                8                156
  CLUS_3               11                221
D31V4, multiclass
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                160
  CLUS_2               11                198
  CLUS_3                9                178
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                8                159
  CLUS_2                4                167
  CLUS_3               11                209
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                118
  CLUS_2               10                194
  CLUS_3                2                 68
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 94
  CLUS_2                2                 63
  CLUS_3                6                135
  CLUS_4                6                 88
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 94
  CLUS_2                5                 65
  CLUS_3                4                 87
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 98
  CLUS_2                7                 99
  CLUS_3                1                 49
D31V11, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                106
  CLUS_2                7                185
  CLUS_3                8                138
D31V12, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                9                144
  CLUS_3               10                282

Clustering(32) Variable = 18p gain mutation analysis
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               39                176
  CLUS_2               26                187
  CLUS_3                8                121
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               20                213
  CLUS_2               41                158
  CLUS_3               12                113
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               22                137
  CLUS_2               22                142
  CLUS_3               29                203
D32V4, multiclass
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               12                151
  CLUS_2               23                186
  CLUS_3               38                149
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               38                129
  CLUS_2               11                160
  CLUS_3               24                196
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               15                109
  CLUS_2               37                167
  CLUS_3                2                 68
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               18                 80
  CLUS_2                9                 56
  CLUS_3               11                130
  CLUS_4               16                 78
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 89
  CLUS_2                6                 64
  CLUS_3               16                 75
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                 94
  CLUS_2               17                 89
  CLUS_3                5                 45
D32V11, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                9                101
  CLUS_2               28                164
  CLUS_3               19                127
D32V12, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               22                131
  CLUS_3               34                258

Clustering(33) Variable = 18q gain mutation analysis
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               15                200
  CLUS_2               20                193
  CLUS_3                6                123
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               16                217
  CLUS_2               18                181
  CLUS_3                7                118
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                149
  CLUS_2               15                149
  CLUS_3               16                216
D33V4, multiclass
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                157
  CLUS_2               12                197
  CLUS_3               23                164
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               21                146
  CLUS_2                6                165
  CLUS_3               14                206
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               11                113
  CLUS_2               16                188
  CLUS_3                1                 69
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 92
  CLUS_2                5                 60
  CLUS_3                7                134
  CLUS_4               10                 84
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                 89
  CLUS_2                5                 65
  CLUS_3                6                 85
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                9                 94
  CLUS_2                9                 97
  CLUS_3                2                 48
D33V11, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                105
  CLUS_2               20                172
  CLUS_3                7                139
D33V12, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                8                145
  CLUS_3               24                268

Clustering(34) Variable = 19p gain mutation analysis
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               50                165
  CLUS_2               34                179
  CLUS_3               15                114
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               30                203
  CLUS_2               47                152
  CLUS_3               22                103
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               31                128
  CLUS_2               25                139
  CLUS_3               42                190
D34V4, multiclass
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               18                145
  CLUS_2               21                188
  CLUS_3               60                127
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               44                123
  CLUS_2               18                153
  CLUS_3               37                183
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               17                107
  CLUS_2               48                156
  CLUS_3                9                 61
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               20                 78
  CLUS_2               11                 54
  CLUS_3               17                124
  CLUS_4               26                 68
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               21                 77
  CLUS_2               11                 59
  CLUS_3               17                 74
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               21                 82
  CLUS_2               17                 89
  CLUS_3               11                 39
D34V11, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               16                 94
  CLUS_2               35                157
  CLUS_3               28                118
D34V12, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               29                124
  CLUS_3               50                242

Clustering(35) Variable = 19q gain mutation analysis
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               47                168
  CLUS_2               28                185
  CLUS_3               16                113
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               32                201
  CLUS_2               43                156
  CLUS_3               16                109
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               25                134
  CLUS_2               23                141
  CLUS_3               41                191
D35V4, multiclass
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               16                147
  CLUS_2               22                187
  CLUS_3               53                134
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               43                124
  CLUS_2               19                152
  CLUS_3               29                191
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               15                109
  CLUS_2               45                159
  CLUS_3               10                 60
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                 78
  CLUS_2                9                 56
  CLUS_3               17                124
  CLUS_4               24                 70
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                 78
  CLUS_2                8                 62
  CLUS_3               17                 74
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                 83
  CLUS_2               17                 89
  CLUS_3                8                 42
D35V11, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 97
  CLUS_2               35                157
  CLUS_3               26                120
D35V12, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               29                124
  CLUS_3               45                247

Clustering(36) Variable = 20p gain mutation analysis
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1              107                108
  CLUS_2               70                143
  CLUS_3               53                 76
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               91                142
  CLUS_2              108                 91
  CLUS_3               31                 94
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               58                101
  CLUS_2               66                 98
  CLUS_3              105                127
D36V4, multiclass
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               44                119
  CLUS_2               65                144
  CLUS_3              122                 65
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1              109                 58
  CLUS_2               59                112
  CLUS_3               63                157
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               52                 72
  CLUS_2               89                115
  CLUS_3               25                 45
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               37                 61
  CLUS_2               24                 41
  CLUS_3               62                 79
  CLUS_4               43                 51
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               34                 64
  CLUS_2               26                 44
  CLUS_3               50                 41
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               33                 70
  CLUS_2               57                 49
  CLUS_3               20                 30
D36V11, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               53                 57
  CLUS_2               80                112
  CLUS_3               57                 89
D36V12, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               63                 90
  CLUS_3              125                167

Clustering(37) Variable = 20q gain mutation analysis
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              127                 88
  CLUS_2               78                135
  CLUS_3               62                 67
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              110                123
  CLUS_2              129                 70
  CLUS_3               28                 97
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               72                 87
  CLUS_2               77                 87
  CLUS_3              117                115
D37V4, multiclass
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               49                114
  CLUS_2               82                127
  CLUS_3              137                 50
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              126                 41
  CLUS_2               68                103
  CLUS_3               74                146
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               59                 65
  CLUS_2              100                104
  CLUS_3               30                 40
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               40                 58
  CLUS_2               26                 39
  CLUS_3               74                 67
  CLUS_4               49                 45
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               40                 58
  CLUS_2               29                 41
  CLUS_3               56                 35
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               40                 63
  CLUS_2               64                 42
  CLUS_3               21                 29
D37V11, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               62                 48
  CLUS_2               90                102
  CLUS_3               68                 78
D37V12, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               75                 78
  CLUS_3              143                149

Clustering(38) Variable = 21q gain mutation analysis
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               26                189
  CLUS_2               23                190
  CLUS_3               18                111
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               32                201
  CLUS_2               28                171
  CLUS_3                7                118
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               19                140
  CLUS_2               19                145
  CLUS_3               29                203
D38V4, multiclass
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                153
  CLUS_2               16                193
  CLUS_3               41                146
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               34                133
  CLUS_2               11                160
  CLUS_3               22                198
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               10                114
  CLUS_2               29                175
  CLUS_3                9                 61
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                9                 89
  CLUS_2                5                 60
  CLUS_3               15                126
  CLUS_4               19                 75
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                 90
  CLUS_2                6                 64
  CLUS_3               13                 78
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                9                 94
  CLUS_2               14                 92
  CLUS_3                4                 46
D38V11, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               18                 92
  CLUS_2               19                173
  CLUS_3               12                134
D38V12, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               15                138
  CLUS_3               34                258

Clustering(39) Variable = 22q gain mutation analysis
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                212
  CLUS_2                2                211
  CLUS_3                4                125
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                229
  CLUS_2                4                195
  CLUS_3                1                124
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                2                157
  CLUS_2                4                160
  CLUS_3                3                229
D39V4, multiclass
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                163
  CLUS_2                6                203
  CLUS_3                3                184
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                164
  CLUS_2                2                169
  CLUS_3                4                216
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                123
  CLUS_2                2                202
  CLUS_3                2                 68
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                1                 64
  CLUS_3                2                139
  CLUS_4                1                 93
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 97
  CLUS_2                1                 69
  CLUS_3                2                 89
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                102
  CLUS_2                3                103
  CLUS_3                0                 50
D39V11, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                106
  CLUS_2                2                190
  CLUS_3                1                145
D39V12, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                  3
  CLUS_2                1                152
  CLUS_3                6                286

Clustering(40) Variable = Xq gain mutation analysis
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16               199
  CLUS_2              13               200
  CLUS_3               4               125
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7               226
  CLUS_2              16               183
  CLUS_3              10               115
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               9               150
  CLUS_2               9               155
  CLUS_3              15               217
D40V4, multiclass
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6               157
  CLUS_2               9               200
  CLUS_3              18               169
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              15               152
  CLUS_2               8               163
  CLUS_3              10               210
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3               121
  CLUS_2              17               187
  CLUS_3               4                66
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                90
  CLUS_2               3                62
  CLUS_3               5               136
  CLUS_4               8                86
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5                93
  CLUS_2               4                66
  CLUS_3               7                84
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5                98
  CLUS_2              10                96
  CLUS_3               1                49
D40V11, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4               106
  CLUS_2              14               178
  CLUS_3               8               138
D40V12, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              10               143
  CLUS_3              15               277

Clustering(41) Variable = 1p loss mutation analysis
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              23               192
  CLUS_2               8               205
  CLUS_3               4               125
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9               224
  CLUS_2              21               178
  CLUS_3               5               120
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9               150
  CLUS_2               7               157
  CLUS_3              19               213
D41V4, multiclass
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               151
  CLUS_2              13               196
  CLUS_3              10               177
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               155
  CLUS_2              14               157
  CLUS_3               9               211
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              10               114
  CLUS_2              12               192
  CLUS_3               6                64
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                95
  CLUS_2               5                60
  CLUS_3              11               130
  CLUS_4               9                85
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                94
  CLUS_2               4                66
  CLUS_3               6                85
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                99
  CLUS_2               8                98
  CLUS_3               2                48
D41V11, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7               103
  CLUS_2              11               181
  CLUS_3               9               137
D41V12, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              11               142
  CLUS_3              16               276

Clustering(42) Variable = 1q loss mutation analysis
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              15               200
  CLUS_2               5               208
  CLUS_3               2               127
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6               227
  CLUS_2              15               184
  CLUS_3               1               124
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5               154
  CLUS_2               1               163
  CLUS_3              16               216
D42V4, multiclass
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4               159
  CLUS_2              12               197
  CLUS_3               6               181
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               8               159
  CLUS_2               8               163
  CLUS_3               6               214
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3               121
  CLUS_2               9               195
  CLUS_3               5                65
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                96
  CLUS_2               5                60
  CLUS_3               4               137
  CLUS_4               6                88
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4                94
  CLUS_2               2                68
  CLUS_3               5                86
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3               100
  CLUS_2               7                99
  CLUS_3               1                49
D42V11, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2               108
  CLUS_2               9               183
  CLUS_3               7               139
D42V12, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2               8               145
  CLUS_3              10               282

Clustering(43) Variable = 2p loss mutation analysis
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               9               206
  CLUS_2              12               201
  CLUS_3               5               124
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              12               221
  CLUS_2               8               191
  CLUS_3               6               119
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7               152
  CLUS_2               7               157
  CLUS_3              12               220
D43V4, multiclass
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7               156
  CLUS_2              12               197
  CLUS_3               7               180
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               162
  CLUS_2               8               163
  CLUS_3              13               207
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3               121
  CLUS_2              12               192
  CLUS_3               4                66
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6                92
  CLUS_2               4                61
  CLUS_3               5               136
  CLUS_4               4                90
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                93
  CLUS_2               7                63
  CLUS_3               3                88
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6                97
  CLUS_2               4               102
  CLUS_3               5                45
D43V11, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4               106
  CLUS_2              12               180
  CLUS_3               8               138
D43V12, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2               7               146
  CLUS_3              17               275

Clustering(44) Variable = 2q loss mutation analysis
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              10               205
  CLUS_2              13               200
  CLUS_3               7               122
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              15               218
  CLUS_2               8               191
  CLUS_3               7               118
D44V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7               152
  CLUS_2               9               155
  CLUS_3              14               218
D44V4, multiclass
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7               156
  CLUS_2              12               197
  CLUS_3              11               176
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6               161
  CLUS_2               7               164
  CLUS_3              17               203
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4               120
  CLUS_2              15               189
  CLUS_3               4                66
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                92
  CLUS_2               3                62
  CLUS_3               7               134
  CLUS_4               7                87
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                92
  CLUS_2               6                64
  CLUS_3               4                87
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7                96
  CLUS_2               4               102
  CLUS_3               5                45
D44V11, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6               104
  CLUS_2              14               178
  CLUS_3               7               139
D44V12, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2               6               147
  CLUS_3              21               271

Clustering(45) Variable = 3p loss mutation analysis
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              30               185
  CLUS_2              15               198
  CLUS_3              14               115
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              23               210
  CLUS_2              30               169
  CLUS_3               6               119
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              17               142
  CLUS_2              19               145
  CLUS_3              23               209
D45V4, multiclass
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              16               147
  CLUS_2              12               197
  CLUS_3              32               155
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              25               142
  CLUS_2              17               154
  CLUS_3              17               203
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9               115
  CLUS_2              19               185
  CLUS_3               6                64
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                92
  CLUS_2               4                61
  CLUS_3              14               127
  CLUS_4              10                84
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              10                88
  CLUS_2               2                68
  CLUS_3              14                77
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              10                93
  CLUS_2              15                91
  CLUS_3               1                49
D45V11, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14                96
  CLUS_2              20               172
  CLUS_3              12               134
D45V12, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              14               139
  CLUS_3              31               261

Clustering(46) Variable = 3q loss mutation analysis
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              12               203
  CLUS_2               5               208
  CLUS_3               6               123
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               8               225
  CLUS_2              13               186
  CLUS_3               2               123
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               152
  CLUS_2               7               157
  CLUS_3               9               223
D46V4, multiclass
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5               158
  CLUS_2               6               203
  CLUS_3              12               175
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11               156
  CLUS_2               5               166
  CLUS_3               7               213
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5               119
  CLUS_2               7               197
  CLUS_3               2                68
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                96
  CLUS_2               1                64
  CLUS_3               8               133
  CLUS_4               3                91
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5                93
  CLUS_2               0                70
  CLUS_3               6                85
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                99
  CLUS_2               7                99
  CLUS_3               0                50
D46V11, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               5               105
  CLUS_2               8               184
  CLUS_3               4               142
D46V12, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2               4               149
  CLUS_3              13               279

Clustering(47) Variable = 4p loss mutation analysis
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1             108               107
  CLUS_2              96               117
  CLUS_3              50                79
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              96               137
  CLUS_2              91               108
  CLUS_3              67                58
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              78                81
  CLUS_2              69                95
  CLUS_3             106               126
D47V4, multiclass
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              77                86
  CLUS_2              82               127
  CLUS_3              95                92
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              75                92
  CLUS_2              79                92
  CLUS_3             100               120
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              55                69
  CLUS_2              93               111
  CLUS_3              23                47
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              49                49
  CLUS_2              22                43
  CLUS_3              59                82
  CLUS_4              41                53
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              46                52
  CLUS_2              26                44
  CLUS_3              38                53
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              48                55
  CLUS_2              36                70
  CLUS_3              26                24
D47V11, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              40                70
  CLUS_2              84               108
  CLUS_3              76                70
D47V12, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              80                73
  CLUS_3             119               173

Clustering(48) Variable = 4q loss mutation analysis
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1             126                89
  CLUS_2             107               106
  CLUS_3              60                69
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1             107               126
  CLUS_2             112                87
  CLUS_3              74                51
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              86                73
  CLUS_2              77                87
  CLUS_3             129               103
D48V4, multiclass
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              91                72
  CLUS_2              93               116
  CLUS_3             110                77
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              89                78
  CLUS_2              91                80
  CLUS_3             113               107
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              64                60
  CLUS_2             115                89
  CLUS_3              31                39
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              60                38
  CLUS_2              30                35
  CLUS_3              68                73
  CLUS_4              52                42
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              47                51
  CLUS_2              37                33
  CLUS_3              51                40
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              49                54
  CLUS_2              52                54
  CLUS_3              34                16
D48V11, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              50                60
  CLUS_2              98                94
  CLUS_3              87                59
D48V12, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              96                57
  CLUS_3             138               154

Clustering(49) Variable = 5p loss mutation analysis
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              39               176
  CLUS_2              29               184
  CLUS_3              16               113
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              28               205
  CLUS_2              39               160
  CLUS_3              17               108
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              21               138
  CLUS_2              31               133
  CLUS_3              32               200
D49V4, multiclass
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              20               143
  CLUS_2              26               183
  CLUS_3              38               149
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              36               131
  CLUS_2              16               155
  CLUS_3              32               188
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              11               113
  CLUS_2              38               166
  CLUS_3               9                61
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              19                79
  CLUS_2              11                54
  CLUS_3              17               124
  CLUS_4              11                83
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              13                85
  CLUS_2               5                65
  CLUS_3              26                65
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              14                89
  CLUS_2              22                84
  CLUS_3               8                42
D49V11, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              18                92
  CLUS_2              29               163
  CLUS_3              24               122
D49V12, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              25               128
  CLUS_3              45               247

Clustering(50) Variable = 5q loss mutation analysis
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              88               127
  CLUS_2              54               159
  CLUS_3              27               102
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              51               182
  CLUS_2              84               115
  CLUS_3              34                91
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              44               115
  CLUS_2              50               114
  CLUS_3              75               157
D50V4, multiclass
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              38               125
  CLUS_2              54               155
  CLUS_3              77               110
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              77                90
  CLUS_2              33               138
  CLUS_3              59               161
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              26                98
  CLUS_2              70               134
  CLUS_3              14                56
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              34                64
  CLUS_2              17                48
  CLUS_3              30               111
  CLUS_4              29                65
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              23                75
  CLUS_2              18                52
  CLUS_3              44                47
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              29                74
  CLUS_2              43                63
  CLUS_3              13                37
D50V11, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              30                80
  CLUS_2              63               129
  CLUS_3              48                98
D50V12, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              49               104
  CLUS_3              91               201

Clustering(51) Variable = 6p loss mutation analysis
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              46               169
  CLUS_2              47               166
  CLUS_3              28               101
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              49               184
  CLUS_2              36               163
  CLUS_3              36                89
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              37               122
  CLUS_2              32               132
  CLUS_3              52               180
D51V4, multiclass
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              46               117
  CLUS_2              40               169
  CLUS_3              35               152
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              25               142
  CLUS_2              42               129
  CLUS_3              54               166
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              23               101
  CLUS_2              52               152
  CLUS_3              12                58
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              23                75
  CLUS_2              13                52
  CLUS_3              26               115
  CLUS_4              25                69
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              22                76
  CLUS_2              16                54
  CLUS_3              15                76
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              27                76
  CLUS_2              16                90
  CLUS_3              10                40
D51V11, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              19                91
  CLUS_2              49               143
  CLUS_3              30               116
D51V12, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              32               121
  CLUS_3              66               226

Clustering(52) Variable = 6q loss mutation analysis
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              73               142
  CLUS_2              72               141
  CLUS_3              46                83
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              79               154
  CLUS_2              57               142
  CLUS_3              55                70
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              52               107
  CLUS_2              60               104
  CLUS_3              80               152
D52V4, multiclass
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              66                97
  CLUS_2              70               139
  CLUS_3              56               131
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              43               124
  CLUS_2              60               111
  CLUS_3              89               131
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              38                86
  CLUS_2              73               131
  CLUS_3              18                52
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              31                67
  CLUS_2              21                44
  CLUS_3              41               100
  CLUS_4              36                58
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              32                66
  CLUS_2              24                46
  CLUS_3              23                68
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              36                67
  CLUS_2              25                81
  CLUS_3              18                32
D52V11, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              32                78
  CLUS_2              67               125
  CLUS_3              50                96
D52V12, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              52               101
  CLUS_3              97               195

Clustering(53) Variable = 7p loss mutation analysis
D53V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              35               180
  CLUS_2              32               181
  CLUS_3              24               105
D53V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              37               196
  CLUS_2              38               161
  CLUS_3              16               109
D53V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              20               139
  CLUS_2              33               131
  CLUS_3              37               195
D53V4, multiclass
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              21               142
  CLUS_2              42               167
  CLUS_3              28               159
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              28               139
  CLUS_2              34               137
  CLUS_3              29               191
D53V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              18               106
  CLUS_2              37               167
  CLUS_3              13                57
D53V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              16                82
  CLUS_2              12                53
  CLUS_3              27               114
  CLUS_4              13                81
D53V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              22                76
  CLUS_2              13                57
  CLUS_3              20                71
D53V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              26                77
  CLUS_2              22                84
  CLUS_3               7                43
D53V11, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              27                83
  CLUS_2              25               167
  CLUS_3              25               121
D53V12, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              26               127
  CLUS_3              50               242

Clustering(54) Variable = 7q loss mutation analysis
D54V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              20               195
  CLUS_2              14               199
  CLUS_3              14               115
D54V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              19               214
  CLUS_2              19               180
  CLUS_3              10               115
D54V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               146
  CLUS_2              18               146
  CLUS_3              17               215
D54V4, multiclass
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              11               152
  CLUS_2              23               186
  CLUS_3              14               173
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               154
  CLUS_2              23               148
  CLUS_3              12               208
D54V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              11               113
  CLUS_2              16               188
  CLUS_3              10                60
D54V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6                92
  CLUS_2               7                58
  CLUS_3              16               125
  CLUS_4               8                86
D54V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               8                90
  CLUS_2               9                61
  CLUS_3              10                81
D54V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              11                92
  CLUS_2              11                95
  CLUS_3               5                45
D54V11, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              15                95
  CLUS_2              11               181
  CLUS_3              15               131
D54V12, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              16               137
  CLUS_3              24               268

Clustering(55) Variable = 8p loss mutation analysis
D55V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              91               124
  CLUS_2              82               131
  CLUS_3              54                75
D55V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              97               136
  CLUS_2              84               115
  CLUS_3              46                79
D55V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              62                97
  CLUS_2              73                91
  CLUS_3              92               140
D55V4, multiclass
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              51               112
  CLUS_2              85               124
  CLUS_3              93                94
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              76                91
  CLUS_2              60               111
  CLUS_3              93               127
D55V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              52                72
  CLUS_2              90               114
  CLUS_3              23                47
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              44                54
  CLUS_2              24                41
  CLUS_3              52                89
  CLUS_4              45                49
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              45                53
  CLUS_2              28                42
  CLUS_3              43                48
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              49                54
  CLUS_2              48                58
  CLUS_3              19                31
D55V11, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              47                63
  CLUS_2              74               118
  CLUS_3              58                88
D55V12, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              61                92
  CLUS_3             117               175

Clustering(56) Variable = 8q loss mutation analysis
D56V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              33               182
  CLUS_2              19               194
  CLUS_3              10               119
D56V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              17               216
  CLUS_2              31               168
  CLUS_3              14               111
D56V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12               147
  CLUS_2              17               147
  CLUS_3              33               199
D56V4, multiclass
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              10               153
  CLUS_2              17               192
  CLUS_3              35               152
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              26               141
  CLUS_2              12               159
  CLUS_3              24               196
D56V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              14               110
  CLUS_2              25               179
  CLUS_3               3                67
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              11                87
  CLUS_2               4                61
  CLUS_3              12               129
  CLUS_4              15                79
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               7                91
  CLUS_2               6                64
  CLUS_3              19                72
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               7                96
  CLUS_2              19                87
  CLUS_3               6                44
D56V11, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              10               100
  CLUS_2              19               173
  CLUS_3              19               127
D56V12, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                 3
  CLUS_2              20               133
  CLUS_3              28               264

Clustering(57) Variable = 9p loss mutation analysis
D57V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              93               122
  CLUS_2              58               155
  CLUS_3              55                74
D57V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              74               159
  CLUS_2              91               108
  CLUS_3              41                84
D57V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              55               104
  CLUS_2              62               102
  CLUS_3              88               144
D57V4, multiclass
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              56               107
  CLUS_2              62               147
  CLUS_3              89                98
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              72                95
  CLUS_2              75                96
  CLUS_3              60               160
D57V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              42                82
  CLUS_2              72               132
  CLUS_3              28                42
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              32                66
  CLUS_2              24                41
  CLUS_3              54                87
  CLUS_4              32                62
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              35                63
  CLUS_2              21                49
  CLUS_3              35                56
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              35                68
  CLUS_2              34                72
  CLUS_3              22                28
D57V11, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              48                62
  CLUS_2              57               135
  CLUS_3              60                86
D57V12, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               2                 1
  CLUS_2              62                91
  CLUS_3             101               191

Clustering(58) Variable = 9q loss mutation analysis
D58V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1             111               104
  CLUS_2              76               137
  CLUS_3              47                82
D58V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              79               154
  CLUS_2             105                94
  CLUS_3              50                75
D58V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              57               102
  CLUS_2              71                93
  CLUS_3             106               126
D58V4, multiclass
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              59               104
  CLUS_2              54               155
  CLUS_3             122                65
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              90                77
  CLUS_2              66               105
  CLUS_3              79               141
D58V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              48                76
  CLUS_2              87               117
  CLUS_3              25                45
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              40                58
  CLUS_2              26                39
  CLUS_3              56                85
  CLUS_4              38                56
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              38                60
  CLUS_2              22                48
  CLUS_3              49                42
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              39                64
  CLUS_2              47                59
  CLUS_3              23                27
D58V11, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              44                66
  CLUS_2              74               118
  CLUS_3              72                74
D58V12, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               2                 1
  CLUS_2              75                78
  CLUS_3             113               179

Clustering(59) Variable = 10p loss mutation analysis
D59V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               25                190
  CLUS_2               28                185
  CLUS_3               10                119
D59V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               23                210
  CLUS_2               23                176
  CLUS_3               17                108
D59V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                140
  CLUS_2               14                150
  CLUS_3               30                202
D59V4, multiclass
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               22                141
  CLUS_2               23                186
  CLUS_3               18                169
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                148
  CLUS_2               22                149
  CLUS_3               22                198
D59V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                114
  CLUS_2               28                176
  CLUS_3                9                 61
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               14                 84
  CLUS_2               13                 52
  CLUS_3               12                129
  CLUS_4                8                 86
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                8                 90
  CLUS_2                8                 62
  CLUS_3                9                 82
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                9                 94
  CLUS_2               13                 93
  CLUS_3                3                 47
D59V11, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                7                103
  CLUS_2               25                167
  CLUS_3               19                127
D59V12, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               19                134
  CLUS_3               32                260

Clustering(60) Variable = 10q loss mutation analysis
D60V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               34                181
  CLUS_2               37                176
  CLUS_3               16                113
D60V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               31                202
  CLUS_2               33                166
  CLUS_3               23                102
D60V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               24                135
  CLUS_2               19                145
  CLUS_3               44                188
D60V4, multiclass
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               28                135
  CLUS_2               26                183
  CLUS_3               33                154
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               30                137
  CLUS_2               23                148
  CLUS_3               34                186
D60V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               16                108
  CLUS_2               38                166
  CLUS_3               11                 59
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               21                 77
  CLUS_2               14                 51
  CLUS_3               17                124
  CLUS_4               13                 81
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               14                 84
  CLUS_2               10                 60
  CLUS_3               16                 75
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               15                 88
  CLUS_2               21                 85
  CLUS_3                4                 46
D60V11, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               12                 98
  CLUS_2               36                156
  CLUS_3               23                123
D60V12, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               22                131
  CLUS_3               49                243

Clustering(61) Variable = 11p loss mutation analysis
D61V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               71                144
  CLUS_2               45                168
  CLUS_3               26                103
D61V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               49                184
  CLUS_2               67                132
  CLUS_3               26                 99
D61V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               34                125
  CLUS_2               37                127
  CLUS_3               70                162
D61V4, multiclass
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               32                131
  CLUS_2               54                155
  CLUS_3               56                131
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               57                110
  CLUS_2               36                135
  CLUS_3               49                171
D61V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               34                 90
  CLUS_2               50                154
  CLUS_3               15                 55
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               18                 80
  CLUS_2               15                 50
  CLUS_3               35                106
  CLUS_4               31                 63
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               24                 74
  CLUS_2               14                 56
  CLUS_3               34                 57
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               28                 75
  CLUS_2               35                 71
  CLUS_3                9                 41
D61V11, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               28                 82
  CLUS_2               54                138
  CLUS_3               39                107
D61V12, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               38                115
  CLUS_3               83                209

Clustering(62) Variable = 11q loss mutation analysis
D62V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               49                166
  CLUS_2               37                176
  CLUS_3               19                110
D62V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               41                192
  CLUS_2               43                156
  CLUS_3               21                104
D62V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                136
  CLUS_2               23                141
  CLUS_3               57                175
D62V4, multiclass
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               24                139
  CLUS_2               40                169
  CLUS_3               41                146
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               39                128
  CLUS_2               32                139
  CLUS_3               34                186
D62V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               21                103
  CLUS_2               39                165
  CLUS_3               12                 58
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               12                 86
  CLUS_2               13                 52
  CLUS_3               26                115
  CLUS_4               21                 73
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               17                 81
  CLUS_2               11                 59
  CLUS_3               25                 66
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               19                 84
  CLUS_2               27                 79
  CLUS_3                7                 43
D62V11, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               23                 87
  CLUS_2               44                148
  CLUS_3               23                123
D62V12, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               23                130
  CLUS_3               67                225

Clustering(63) Variable = 12p loss mutation analysis
D63V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               16                199
  CLUS_2               18                195
  CLUS_3               16                113
D63V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               25                208
  CLUS_2               11                188
  CLUS_3               14                111
D63V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               14                145
  CLUS_2               15                149
  CLUS_3               21                211
D63V4, multiclass
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               14                149
  CLUS_2               28                181
  CLUS_3                8                179
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                156
  CLUS_2               14                157
  CLUS_3               25                195
D63V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                9                115
  CLUS_2               18                186
  CLUS_3                6                 64
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 92
  CLUS_2               11                 54
  CLUS_3                8                133
  CLUS_4                8                 86
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                 90
  CLUS_2                8                 62
  CLUS_3                4                 87
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                 93
  CLUS_2                6                100
  CLUS_3                4                 46
D63V11, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                102
  CLUS_2               23                169
  CLUS_3               11                135
D63V12, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               12                141
  CLUS_3               29                263

Clustering(64) Variable = 12q loss mutation analysis
D64V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               23                192
  CLUS_2               35                178
  CLUS_3               15                114
D64V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               34                199
  CLUS_2               14                185
  CLUS_3               25                100
D64V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               22                137
  CLUS_2               26                138
  CLUS_3               26                206
D64V4, multiclass
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               17                146
  CLUS_2               41                168
  CLUS_3               16                171
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               15                152
  CLUS_2               27                144
  CLUS_3               32                188
D64V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               18                106
  CLUS_2               27                177
  CLUS_3                8                 62
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               15                 83
  CLUS_2               14                 51
  CLUS_3               16                125
  CLUS_4                8                 86
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               13                 85
  CLUS_2                8                 62
  CLUS_3                5                 86
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               14                 89
  CLUS_2                5                101
  CLUS_3                7                 43
D64V11, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               12                 98
  CLUS_2               31                161
  CLUS_3               15                131
D64V12, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                  3
  CLUS_2               17                136
  CLUS_3               41                251

Clustering(65) Variable = 13q loss mutation analysis
D65V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               96                119
  CLUS_2              108                105
  CLUS_3               51                 78
D65V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1              104                129
  CLUS_2               90                109
  CLUS_3               61                 64
D65V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               71                 88
  CLUS_2               76                 88
  CLUS_3              109                123
D65V4, multiclass
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               52                111
  CLUS_2              112                 97
  CLUS_3               92                 95
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               75                 92
  CLUS_2               54                117
  CLUS_3              127                 93
D65V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               51                 73
  CLUS_2              112                 92
  CLUS_3               25                 45
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               50                 48
  CLUS_2               34                 31
  CLUS_3               52                 89
  CLUS_4               52                 42
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               42                 56
  CLUS_2               37                 33
  CLUS_3               43                 48
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               50                 53
  CLUS_2               46                 60
  CLUS_3               26                 24
D65V11, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               41                 69
  CLUS_2               94                 98
  CLUS_3               69                 77
D65V12, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               69                 84
  CLUS_3              134                158

Clustering(66) Variable = 14q loss mutation analysis
D66V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               73                142
  CLUS_2               59                154
  CLUS_3               29                100
D66V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               60                173
  CLUS_2               68                131
  CLUS_3               33                 92
D66V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               48                111
  CLUS_2               46                118
  CLUS_3               67                165
D66V4, multiclass
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               42                121
  CLUS_2               49                160
  CLUS_3               71                116
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               62                105
  CLUS_2               40                131
  CLUS_3               60                160
D66V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               28                 96
  CLUS_2               62                142
  CLUS_3               20                 50
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               31                 67
  CLUS_2               22                 43
  CLUS_3               31                110
  CLUS_4               26                 68
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               25                 73
  CLUS_2               15                 55
  CLUS_3               35                 56
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               30                 73
  CLUS_2               33                 73
  CLUS_3               12                 38
D66V11, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               27                 83
  CLUS_2               55                137
  CLUS_3               48                 98
D66V12, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               49                104
  CLUS_3               79                213

Clustering(67) Variable = 15q loss mutation analysis
D67V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1              102                113
  CLUS_2               68                145
  CLUS_3               46                 83
D67V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               83                150
  CLUS_2               94                105
  CLUS_3               39                 86
D67V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               48                111
  CLUS_2               57                107
  CLUS_3              111                121
D67V4, multiclass
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               49                114
  CLUS_2               63                146
  CLUS_3              106                 81
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               86                 81
  CLUS_2               50                121
  CLUS_3               82                138
D67V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               44                 80
  CLUS_2               84                120
  CLUS_3               30                 40
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               38                 60
  CLUS_2               26                 39
  CLUS_3               54                 87
  CLUS_4               40                 54
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               36                 62
  CLUS_2               22                 48
  CLUS_3               46                 45
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               40                 63
  CLUS_2               47                 59
  CLUS_3               17                 33
D67V11, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               42                 68
  CLUS_2               95                 97
  CLUS_3               52                 94
D67V12, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               59                 94
  CLUS_3              129                163

Clustering(68) Variable = 16p loss mutation analysis
D68V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1              102                113
  CLUS_2               99                114
  CLUS_3               61                 68
D68V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1              108                125
  CLUS_2               93                106
  CLUS_3               61                 64
D68V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               78                 81
  CLUS_2               69                 95
  CLUS_3              115                117
D68V4, multiclass
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               69                 94
  CLUS_2               93                116
  CLUS_3              101                 86
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               90                 77
  CLUS_2               76                 95
  CLUS_3               97                123
D68V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               60                 64
  CLUS_2               95                109
  CLUS_3               30                 40
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               41                 57
  CLUS_2               31                 34
  CLUS_3               70                 71
  CLUS_4               43                 51
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               51                 47
  CLUS_2               31                 39
  CLUS_3               47                 44
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               54                 49
  CLUS_2               53                 53
  CLUS_3               22                 28
D68V11, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               48                 62
  CLUS_2              101                 91
  CLUS_3               70                 76
D68V12, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               72                 81
  CLUS_3              146                146

Clustering(69) Variable = 16q loss mutation analysis
D69V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              136                 79
  CLUS_2              132                 81
  CLUS_3               81                 48
D69V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              143                 90
  CLUS_2              128                 71
  CLUS_3               78                 47
D69V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               98                 61
  CLUS_2               92                 72
  CLUS_3              159                 73
D69V4, multiclass
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               90                 73
  CLUS_2              129                 80
  CLUS_3              131                 56
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              116                 51
  CLUS_2              105                 66
  CLUS_3              129                 91
D69V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               75                 49
  CLUS_2              130                 74
  CLUS_3               43                 27
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               59                 39
  CLUS_2               40                 25
  CLUS_3               88                 53
  CLUS_4               61                 33
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               63                 35
  CLUS_2               40                 30
  CLUS_3               60                 31
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               65                 38
  CLUS_2               69                 37
  CLUS_3               29                 21
D69V11, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               68                 42
  CLUS_2              131                 61
  CLUS_3               89                 57
D69V12, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               92                 61
  CLUS_3              194                 98

Clustering(70) Variable = 17p loss mutation analysis
D70V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              157                 58
  CLUS_2              169                 44
  CLUS_3               92                 37
D70V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              174                 59
  CLUS_2              141                 58
  CLUS_3              103                 22
D70V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              119                 40
  CLUS_2              123                 41
  CLUS_3              177                 55
D70V4, multiclass
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              119                 44
  CLUS_2              167                 42
  CLUS_3              134                 53
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              114                 53
  CLUS_2              133                 38
  CLUS_3              172                 48
D70V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               86                 38
  CLUS_2              153                 51
  CLUS_3               54                 16
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               72                 26
  CLUS_2               55                 10
  CLUS_3               99                 42
  CLUS_4               67                 27
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               79                 19
  CLUS_2               56                 14
  CLUS_3               64                 27
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               84                 19
  CLUS_2               76                 30
  CLUS_3               39                 11
D70V11, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               81                 29
  CLUS_2              153                 39
  CLUS_3              107                 39
D70V12, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2              113                 40
  CLUS_3              226                 66

Clustering(71) Variable = 17q loss mutation analysis
D71V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1              126                 89
  CLUS_2              137                 76
  CLUS_3               60                 69
D71V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1              122                111
  CLUS_2              114                 85
  CLUS_3               87                 38
D71V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               85                 74
  CLUS_2               87                 77
  CLUS_3              151                 81
D71V4, multiclass
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               90                 73
  CLUS_2              130                 79
  CLUS_3              103                 84
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               87                 80
  CLUS_2               99                 72
  CLUS_3              136                 84
D71V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               65                 59
  CLUS_2              124                 80
  CLUS_3               41                 29
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               61                 37
  CLUS_2               42                 23
  CLUS_3               72                 69
  CLUS_4               55                 39
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               53                 45
  CLUS_2               53                 17
  CLUS_3               52                 39
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               59                 44
  CLUS_2               61                 45
  CLUS_3               38                 12
D71V11, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               47                 63
  CLUS_2              125                 67
  CLUS_3               92                 54
D71V12, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               97                 56
  CLUS_3              165                127

Clustering(72) Variable = 18p loss mutation analysis
D72V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               72                143
  CLUS_2               68                145
  CLUS_3               40                 89
D72V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               77                156
  CLUS_2               61                138
  CLUS_3               42                 83
D72V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               58                101
  CLUS_2               47                117
  CLUS_3               76                156
D72V4, multiclass
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               61                102
  CLUS_2               63                146
  CLUS_3               58                129
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               45                122
  CLUS_2               71                100
  CLUS_3               65                155
D72V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               41                 83
  CLUS_2               67                137
  CLUS_3               26                 44
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               28                 70
  CLUS_2               18                 47
  CLUS_3               52                 89
  CLUS_4               36                 58
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               26                 72
  CLUS_2               18                 52
  CLUS_3               38                 53
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               29                 74
  CLUS_2               37                 69
  CLUS_3               16                 34
D72V11, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               35                 75
  CLUS_2               61                131
  CLUS_3               50                 96
D72V12, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               52                101
  CLUS_3               93                199

Clustering(73) Variable = 18q loss mutation analysis
D73V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               95                120
  CLUS_2               78                135
  CLUS_3               53                 76
D73V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               91                142
  CLUS_2               82                117
  CLUS_3               53                 72
D73V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               69                 90
  CLUS_2               64                100
  CLUS_3               94                138
D73V4, multiclass
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               65                 98
  CLUS_2               91                118
  CLUS_3               72                115
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               63                104
  CLUS_2               77                 94
  CLUS_3               88                132
D73V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               51                 73
  CLUS_2               81                123
  CLUS_3               30                 40
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               37                 61
  CLUS_2               20                 45
  CLUS_3               61                 80
  CLUS_4               44                 50
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               31                 67
  CLUS_2               23                 47
  CLUS_3               50                 41
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               35                 68
  CLUS_2               50                 56
  CLUS_3               19                 31
D73V11, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               45                 65
  CLUS_2               76                116
  CLUS_3               64                 82
D73V12, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               67                 86
  CLUS_3              116                176

Clustering(74) Variable = 19p loss mutation analysis
D74V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               60                155
  CLUS_2               52                161
  CLUS_3               28                101
D74V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               56                177
  CLUS_2               53                146
  CLUS_3               31                 94
D74V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               31                128
  CLUS_2               39                125
  CLUS_3               70                162
D74V4, multiclass
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               39                124
  CLUS_2               46                163
  CLUS_3               55                132
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               50                117
  CLUS_2               35                136
  CLUS_3               54                166
D74V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               20                104
  CLUS_2               48                156
  CLUS_3               24                 46
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               20                 78
  CLUS_2               17                 48
  CLUS_3               29                112
  CLUS_4               26                 68
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               27                 71
  CLUS_2               15                 55
  CLUS_3               25                 66
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               27                 76
  CLUS_2               32                 74
  CLUS_3                8                 42
D74V11, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               24                 86
  CLUS_2               52                140
  CLUS_3               40                106
D74V12, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               39                114
  CLUS_3               75                217

Clustering(75) Variable = 19q loss mutation analysis
D75V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               63                152
  CLUS_2               53                160
  CLUS_3               24                105
D75V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               51                182
  CLUS_2               54                145
  CLUS_3               35                 90
D75V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               35                124
  CLUS_2               37                127
  CLUS_3               68                164
D75V4, multiclass
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               46                117
  CLUS_2               42                167
  CLUS_3               52                135
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               44                123
  CLUS_2               40                131
  CLUS_3               55                165
D75V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               23                101
  CLUS_2               44                160
  CLUS_3               24                 46
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               23                 75
  CLUS_2               18                 47
  CLUS_3               28                113
  CLUS_4               22                 72
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               24                 74
  CLUS_2               17                 53
  CLUS_3               22                 69
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               25                 78
  CLUS_2               30                 76
  CLUS_3                8                 42
D75V11, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               24                 86
  CLUS_2               43                149
  CLUS_3               45                101
D75V12, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2               42                111
  CLUS_3               68                224

Clustering(76) Variable = 20p loss mutation analysis
D76V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                205
  CLUS_2               15                198
  CLUS_3               11                118
D76V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               16                217
  CLUS_2               10                189
  CLUS_3               10                115
D76V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                148
  CLUS_2                8                156
  CLUS_3               17                215
D76V4, multiclass
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                150
  CLUS_2               18                191
  CLUS_3                6                181
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                162
  CLUS_2               16                155
  CLUS_3               16                204
D76V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                119
  CLUS_2               16                188
  CLUS_3                4                 66
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                 88
  CLUS_2                2                 63
  CLUS_3                7                134
  CLUS_4                6                 88
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 86
  CLUS_2                1                 69
  CLUS_3                4                 87
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 91
  CLUS_2                3                103
  CLUS_3                2                 48
D76V11, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                108
  CLUS_2               18                174
  CLUS_3               10                136
D76V12, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2                8                145
  CLUS_3               21                271

Clustering(77) Variable = 20q loss mutation analysis
D77V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                208
  CLUS_2               10                203
  CLUS_3                4                125
D77V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                227
  CLUS_2                7                192
  CLUS_3                8                117
D77V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                152
  CLUS_2                3                161
  CLUS_3               11                221
D77V4, multiclass
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                9                154
  CLUS_2                8                201
  CLUS_3                4                183
D77V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                163
  CLUS_2                8                163
  CLUS_3                9                211
D77V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                121
  CLUS_2               11                193
  CLUS_3                1                 69
D77V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                8                 90
  CLUS_2                2                 63
  CLUS_3                3                138
  CLUS_4                2                 92
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 94
  CLUS_2                0                 70
  CLUS_3                2                 89
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 99
  CLUS_2                2                104
  CLUS_3                0                 50
D77V11, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                108
  CLUS_2               10                182
  CLUS_3                6                140
D77V12, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2                4                149
  CLUS_3               13                279

Clustering(78) Variable = 21q loss mutation analysis
D78V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               62                153
  CLUS_2               57                156
  CLUS_3               28                101
D78V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               54                179
  CLUS_2               54                145
  CLUS_3               39                 86
D78V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               35                124
  CLUS_2               47                117
  CLUS_3               65                167
D78V4, multiclass
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               44                119
  CLUS_2               54                155
  CLUS_3               50                137
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               56                111
  CLUS_2               39                132
  CLUS_3               52                168
D78V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               23                101
  CLUS_2               54                150
  CLUS_3               22                 48
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               25                 73
  CLUS_2               23                 42
  CLUS_3               30                111
  CLUS_4               21                 73
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               31                 67
  CLUS_2               17                 53
  CLUS_3               25                 66
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               31                 72
  CLUS_2               30                 76
  CLUS_3               12                 38
D78V11, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               23                 87
  CLUS_2               58                134
  CLUS_3               40                106
D78V12, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                1                  2
  CLUS_2               43                110
  CLUS_3               77                215

Clustering(79) Variable = 22q loss mutation analysis
D79V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              168                 47
  CLUS_2              129                 84
  CLUS_3               80                 49
D79V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              134                 99
  CLUS_2              156                 43
  CLUS_3               87                 38
D79V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               99                 60
  CLUS_2              108                 56
  CLUS_3              170                 62
D79V4, multiclass
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              104                 59
  CLUS_2              130                 79
  CLUS_3              144                 43
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              125                 42
  CLUS_2              118                 53
  CLUS_3              134                 86
D79V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               82                 42
  CLUS_2              150                 54
  CLUS_3               39                 31
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               76                 22
  CLUS_2               40                 25
  CLUS_3               93                 48
  CLUS_4               62                 32
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               66                 32
  CLUS_2               44                 26
  CLUS_3               72                 19
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               67                 36
  CLUS_2               80                 26
  CLUS_3               35                 15
D79V11, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               63                 47
  CLUS_2              143                 49
  CLUS_3              108                 38
D79V12, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                2                  1
  CLUS_2              114                 39
  CLUS_3              198                 94

Clustering(80) Variable = Xq loss mutation analysis
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              47               168
  CLUS_2              38               175
  CLUS_3              16               113
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              34               199
  CLUS_2              42               157
  CLUS_3              25               100
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              22               137
  CLUS_2              25               139
  CLUS_3              54               178
D80V4, multiclass
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              22               141
  CLUS_2              44               165
  CLUS_3              36               151
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              35               132
  CLUS_2              26               145
  CLUS_3              41               179
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              19               105
  CLUS_2              37               167
  CLUS_3              10                60
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              20                78
  CLUS_2              13                52
  CLUS_3              19               122
  CLUS_4              14                80
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              18                80
  CLUS_2              14                56
  CLUS_3              24                67
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              21                82
  CLUS_2              26                80
  CLUS_3               9                41
D80V11, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              20                90
  CLUS_2              37               155
  CLUS_3              26               120
D80V12, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                 2
  CLUS_2              25               128
  CLUS_3              57               235
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"              "MIR_CNMF" 
                     V4                      V5                      V6 
    "MIR_CHIERARCHICAL"               "CN_CNMF"      "METHLYATION_CNMF" 
                     V7                      V8                      V9 
            "RPPA_CNMF"    "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" 
                    V10                     V11                     V12 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
