
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/335788/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/OV-TP/2667979/1.GDAC_mergedClustering.Finished/OV-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=OV-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"       "-oT=OV-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=586, in cluster file=559, common to both=559
[1]  70 559
[1] "Amp Peak  1(1p34.3) mutation analysis"
[1] 3
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          277                           282 
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          277                           282 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          350                           209 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          350                           209 
[1] "Amp Peak  3(1q42.2) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE 
                          304                           255 
  AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE 
                          304                           255 
[1] "Amp Peak  4(2p23.2) mutation analysis"
[1] 3
  AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE 
                          235                           324 
  AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE 
                          235                           324 
[1] "Amp Peak  5(2q31.2) mutation analysis"
[1] 3
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                          245                           314 
  AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE 
                          245                           314 
[1] "Amp Peak  6(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          465                            94 
  AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE 
                          465                            94 
[1] "Amp Peak  7(4p16.3) mutation analysis"
[1] 3
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                          152                           407 
  AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE 
                          152                           407 
[1] "Amp Peak  8(4q13.3) mutation analysis"
[1] 3
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                          105                           454 
  AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE 
                          105                           454 
[1] "Amp Peak  9(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           295                            264 
  AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE 
                           295                            264 
[1] "Amp Peak 10(6p22.3) mutation analysis"
[1] 3
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          287                           272 
  AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE 
                          287                           272 
[1] "Amp Peak 11(7q36.3) mutation analysis"
[1] 3
  AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE 
                          300                           259 
  AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE 
                          300                           259 
[1] "Amp Peak 12(8p11.21) mutation analysis"
[1] 3
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           196                            363 
  AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE 
                           196                            363 
[1] "Amp Peak 13(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           439                            120 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           439                            120 
[1] "Amp Peak 14(10p15.3) mutation analysis"
[1] 3
  AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE 
                           239                            320 
  AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE 
                           239                            320 
[1] "Amp Peak 15(10q22.3) mutation analysis"
[1] 3
  AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE 
                           175                            384 
  AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE 
                           175                            384 
[1] "Amp Peak 16(11q14.1) mutation analysis"
[1] 3
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           247                            312 
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           247                            312 
[1] "Amp Peak 17(12p13.33) mutation analysis"
[1] 3
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            311                             248 
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            311                             248 
[1] "Amp Peak 18(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE 
                           294                            265 
  AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE 
                           294                            265 
[1] "Amp Peak 19(14q11.2) mutation analysis"
[1] 3
  AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE 
                           142                            417 
  AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE 
                           142                            417 
[1] "Amp Peak 20(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE 
                           156                            403 
  AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE 
                           156                            403 
[1] "Amp Peak 21(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE 
                           205                            354 
  AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE 
                           205                            354 
[1] "Amp Peak 22(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE 
                           137                            422 
  AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE 
                           137                            422 
[1] "Amp Peak 23(19p13.12) mutation analysis"
[1] 3
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                            301                             258 
  AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE 
                            301                             258 
[1] "Amp Peak 24(19q12) mutation analysis"
[1] 3
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                         309                          250 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                         309                          250 
[1] "Amp Peak 25(19q13.2) mutation analysis"
[1] 3
  AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE 
                           235                            324 
  AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE 
                           235                            324 
[1] "Amp Peak 26(20p13) mutation analysis"
[1] 3
  AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE 
                         300                          259 
  AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE 
                         300                          259 
[1] "Amp Peak 27(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE 
                            326                             233 
  AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE 
                            326                             233 
[1] "Amp Peak 28(20q13.33) mutation analysis"
[1] 3
  AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE 
                            387                             172 
  AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE 
                            387                             172 
[1] "Amp Peak 29(22q12.2) mutation analysis"
[1] 3
  AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE 
                            88                            471 
  AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE 
                            88                            471 
[1] "Amp Peak 30(Xp11.23) mutation analysis"
[1] 3
  AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE 
                           162                            397 
  AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE 
                           162                            397 
[1] "Amp Peak 31(Xq28) mutation analysis"
[1] 3
  AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE 
                        222                         337 
  AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE 
                        222                         337 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           264                            295 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           264                            295 
[1] "Del Peak  2(1q32.3) mutation analysis"
[1] 3
  DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE 
                           92                           467 
  DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE 
                           92                           467 
[1] "Del Peak  3(2p25.3) mutation analysis"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                          117                           442 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                          117                           442 
[1] "Del Peak  4(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          132                           427 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                          132                           427 
[1] "Del Peak  5(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          172                           387 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                          172                           387 
[1] "Del Peak  6(3p26.2) mutation analysis"
[1] 3
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          206                           353 
  DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE 
                          206                           353 
[1] "Del Peak  7(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          373                           186 
  DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE 
                          373                           186 
[1] "Del Peak  8(4q34.3) mutation analysis"
[1] 3
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                          404                           155 
  DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE 
                          404                           155 
[1] "Del Peak  9(5q11.2) mutation analysis"
[1] 3
  DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE 
                          335                           224 
  DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE 
                          335                           224 
[1] "Del Peak 10(5q13.2) mutation analysis"
[1] 3
  DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE 
                          398                           161 
  DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE 
                          398                           161 
[1] "Del Peak 11(6q27) mutation analysis"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        362                         197 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        362                         197 
[1] "Del Peak 12(7p22.1) mutation analysis"
[1] 3
  DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE 
                          243                           316 
  DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE 
                          243                           316 
[1] "Del Peak 13(8p23.3) mutation analysis"
[1] 3
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                          375                           184 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                          375                           184 
[1] "Del Peak 14(8p21.2) mutation analysis"
[1] 3
  DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE 
                          392                           167 
  DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE 
                          392                           167 
[1] "Del Peak 15(9p24.3) mutation analysis"
[1] 3
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          247                           312 
  DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE 
                          247                           312 
[1] "Del Peak 16(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE 
                           268                            291 
  DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE 
                           268                            291 
[1] "Del Peak 17(9q34.13) mutation analysis"
[1] 3
  DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE 
                           330                            229 
  DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE 
                           330                            229 
[1] "Del Peak 18(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           118                            441 
  DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE 
                           118                            441 
[1] "Del Peak 19(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            215                             344 
  DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE 
                            215                             344 
[1] "Del Peak 20(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           186                            373 
  DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE 
                           186                            373 
[1] "Del Peak 21(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           334                            225 
  DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE 
                           334                            225 
[1] "Del Peak 22(11q25) mutation analysis"
[1] 3
  DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE 
                         193                          366 
  DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE 
                         193                          366 
[1] "Del Peak 23(12q23.1) mutation analysis"
[1] 3
  DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE 
                           193                            366 
  DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE 
                           193                            366 
[1] "Del Peak 24(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE 
                            213                             346 
  DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE 
                            213                             346 
[1] "Del Peak 25(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE 
                           348                            211 
  DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE 
                           348                            211 
[1] "Del Peak 26(14q23.2) mutation analysis"
[1] 3
  DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE 
                           292                            267 
  DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE 
                           292                            267 
[1] "Del Peak 27(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE 
                           351                            208 
  DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE 
                           351                            208 
[1] "Del Peak 28(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                           297                            262 
  DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE 
                           297                            262 
[1] "Del Peak 29(16q22.1) mutation analysis"
[1] 3
  DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE 
                           441                            118 
  DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE 
                           441                            118 
[1] "Del Peak 30(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE 
                           434                            125 
  DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE 
                           434                            125 
[1] "Del Peak 31(17p12) mutation analysis"
[1] 3
  DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE 
                         472                           87 
  DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE 
                         472                           87 
[1] "Del Peak 32(17q11.2) mutation analysis"
[1] 3
  DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE 
                           456                            103 
  DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE 
                           456                            103 
[1] "Del Peak 33(18q23) mutation analysis"
[1] 3
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                         364                          195 
  DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE 
                         364                          195 
[1] "Del Peak 34(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                           492                             67 
  DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE 
                           492                             67 
[1] "Del Peak 35(19q13.33) mutation analysis"
[1] 3
  DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE 
                            290                             269 
  DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE 
                            290                             269 
[1] "Del Peak 36(19q13.43) mutation analysis"
[1] 3
  DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE 
                            277                             282 
  DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE 
                            277                             282 
[1] "Del Peak 37(21q22.3) mutation analysis"
[1] 3
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                           218                            341 
  DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE 
                           218                            341 
[1] "Del Peak 38(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                            483                              76 
  DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE 
                            483                              76 
[1] "Del Peak 39(Xp21.1) mutation analysis"
[1] 3
  DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE 
                          356                           203 
  DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE 
                          356                           203 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 12 rows and 559 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 559 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p34.3) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          98                           117
  CLUS_2                         116                            97
  CLUS_3                          63                            66
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                         119                           114
  CLUS_2                          96                           103
  CLUS_3                          62                            63
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          77                            82
  CLUS_2                          73                            91
  CLUS_3                         126                           106
D1V4, multiclass
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          53                           110
  CLUS_2                         116                            93
  CLUS_3                         108                            79
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          92                            75
  CLUS_2                          75                            96
  CLUS_3                         110                           110
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          52                            72
  CLUS_2                         108                            96
  CLUS_3                          36                            34
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          51                            47
  CLUS_2                          33                            32
  CLUS_3                          69                            72
  CLUS_4                          43                            51
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          55                            43
  CLUS_2                          35                            35
  CLUS_3                          43                            48
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          57                            46
  CLUS_2                          49                            57
  CLUS_3                          27                            23
D1V11, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          48                            62
  CLUS_2                         113                            79
  CLUS_3                          72                            74
D1V12, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          73                            80
  CLUS_3                         158                           134

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         144                            71
  CLUS_2                         130                            83
  CLUS_3                          75                            54
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         135                            98
  CLUS_2                         137                            62
  CLUS_3                          77                            48
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          97                            62
  CLUS_2                         100                            64
  CLUS_3                         150                            82
D2V4, multiclass
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          80                            83
  CLUS_2                         116                            93
  CLUS_3                         154                            33
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         124                            43
  CLUS_2                          87                            84
  CLUS_3                         139                            81
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          72                            52
  CLUS_2                         138                            66
  CLUS_3                          37                            33
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          57                            41
  CLUS_2                          41                            24
  CLUS_3                          80                            61
  CLUS_4                          69                            25
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          63                            35
  CLUS_2                          42                            28
  CLUS_3                          61                            30
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          67                            36
  CLUS_2                          73                            33
  CLUS_3                          26                            24
D2V11, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          70                            40
  CLUS_2                         120                            72
  CLUS_3                          89                            57
D2V12, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          93                            60
  CLUS_3                         184                           108

Clustering(3) Variable = Amp Peak  3(1q42.2) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         132                            83
  CLUS_2                         103                           110
  CLUS_3                          68                            61
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         118                           115
  CLUS_2                         123                            76
  CLUS_3                          62                            63
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          85                            74
  CLUS_2                          89                            75
  CLUS_3                         128                           104
D3V4, multiclass
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          84                            79
  CLUS_2                          84                           125
  CLUS_3                         136                            51
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                         114                            53
  CLUS_2                          83                            88
  CLUS_3                         107                           113
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          72                            52
  CLUS_2                         114                            90
  CLUS_3                          30                            40
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          52                            46
  CLUS_2                          29                            36
  CLUS_3                          75                            66
  CLUS_4                          60                            34
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          53                            45
  CLUS_2                          38                            32
  CLUS_3                          57                            34
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          55                            48
  CLUS_2                          63                            43
  CLUS_3                          30                            20
D3V11, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                          63                            47
  CLUS_2                          94                            98
  CLUS_3                          85                            61
D3V12, multiclass
        clus
vv       AMP PEAK  3(1Q42.2) MUTATED AMP PEAK  3(1Q42.2) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          89                            64
  CLUS_3                         151                           141

Clustering(4) Variable = Amp Peak  4(2p23.2) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          99                           116
  CLUS_2                          84                           129
  CLUS_3                          52                            77
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          87                           146
  CLUS_2                          99                           100
  CLUS_3                          49                            76
D4V3, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          62                            97
  CLUS_2                          73                            91
  CLUS_3                         100                           132
D4V4, multiclass
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          44                           119
  CLUS_2                          83                           126
  CLUS_3                         108                            79
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          87                            80
  CLUS_2                          58                           113
  CLUS_3                          89                           131
D4V7, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          51                            73
  CLUS_2                          91                           113
  CLUS_3                          24                            46
D4V8, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          40                            58
  CLUS_2                          23                            42
  CLUS_3                          58                            83
  CLUS_4                          45                            49
D4V9, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          45                            53
  CLUS_2                          24                            46
  CLUS_3                          47                            44
D4V10, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          41                            62
  CLUS_2                          53                            53
  CLUS_3                          22                            28
D4V11, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                          46                            64
  CLUS_2                          79                           113
  CLUS_3                          63                            83
D4V12, multiclass
        clus
vv       AMP PEAK  4(2P23.2) MUTATED AMP PEAK  4(2P23.2) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                          69                            84
  CLUS_3                         118                           174

Clustering(5) Variable = Amp Peak  5(2q31.2) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                         105                           110
  CLUS_2                          92                           121
  CLUS_3                          47                            82
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          97                           136
  CLUS_2                         105                            94
  CLUS_3                          42                            83
D5V3, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          69                            90
  CLUS_2                          61                           103
  CLUS_3                         113                           119
D5V4, multiclass
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          39                           124
  CLUS_2                         100                           109
  CLUS_3                         106                            81
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          94                            73
  CLUS_2                          62                           109
  CLUS_3                          88                           132
D5V7, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          56                            68
  CLUS_2                          97                           107
  CLUS_3                          22                            48
D5V8, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          44                            54
  CLUS_2                          32                            33
  CLUS_3                          60                            81
  CLUS_4                          39                            55
D5V9, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          43                            55
  CLUS_2                          26                            44
  CLUS_3                          47                            44
D5V10, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          43                            60
  CLUS_2                          55                            51
  CLUS_3                          18                            32
D5V11, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                          49                            61
  CLUS_2                          91                           101
  CLUS_3                          60                            86
D5V12, multiclass
        clus
vv       AMP PEAK  5(2Q31.2) MUTATED AMP PEAK  5(2Q31.2) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          62                            91
  CLUS_3                         136                           156

Clustering(6) Variable = Amp Peak  6(3q26.2) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         165                            50
  CLUS_2                         187                            26
  CLUS_3                         111                            18
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         209                            24
  CLUS_2                         159                            40
  CLUS_3                          95                            30
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         133                            26
  CLUS_2                         136                            28
  CLUS_3                         193                            39
D6V4, multiclass
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         111                            52
  CLUS_2                         182                            27
  CLUS_3                         172                            15
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         145                            22
  CLUS_2                         134                            37
  CLUS_3                         185                            35
D6V7, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                         101                            23
  CLUS_2                         166                            38
  CLUS_3                          58                            12
D6V8, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          72                            26
  CLUS_2                          54                            11
  CLUS_3                         121                            20
  CLUS_4                          78                            16
D6V9, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          87                            11
  CLUS_2                          61                             9
  CLUS_3                          69                            22
D6V10, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          92                            11
  CLUS_2                          85                            21
  CLUS_3                          40                            10
D6V11, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                          90                            20
  CLUS_2                         167                            25
  CLUS_3                         116                            30
D6V12, multiclass
        clus
vv       AMP PEAK  6(3Q26.2) MUTATED AMP PEAK  6(3Q26.2) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                         124                            29
  CLUS_3                         247                            45

Clustering(7) Variable = Amp Peak  7(4p16.3) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          60                           155
  CLUS_2                          58                           155
  CLUS_3                          34                            95
D7V2, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          68                           165
  CLUS_2                          61                           138
  CLUS_3                          23                           102
D7V3, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          42                           117
  CLUS_2                          35                           129
  CLUS_3                          75                           157
D7V4, multiclass
D7V5, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          32                           131
  CLUS_2                          75                           134
  CLUS_3                          45                           142
D7V6, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          56                           111
  CLUS_2                          51                           120
  CLUS_3                          44                           176
D7V7, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          30                            94
  CLUS_2                          64                           140
  CLUS_3                          22                            48
D7V8, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          29                            69
  CLUS_2                          18                            47
  CLUS_3                          44                            97
  CLUS_4                          25                            69
D7V9, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          29                            69
  CLUS_2                          18                            52
  CLUS_3                          33                            58
D7V10, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          29                            74
  CLUS_2                          38                            68
  CLUS_3                          13                            37
D7V11, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                          29                            81
  CLUS_2                          59                           133
  CLUS_3                          36                           110
D7V12, multiclass
        clus
vv       AMP PEAK  7(4P16.3) MUTATED AMP PEAK  7(4P16.3) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          38                           115
  CLUS_3                          84                           208

Clustering(8) Variable = Amp Peak  8(4q13.3) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          40                           175
  CLUS_2                          42                           171
  CLUS_3                          23                           106
D8V2, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          49                           184
  CLUS_2                          40                           159
  CLUS_3                          16                           109
D8V3, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          33                           126
  CLUS_2                          25                           139
  CLUS_3                          47                           185
D8V4, multiclass
D8V5, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          13                           150
  CLUS_2                          55                           154
  CLUS_3                          37                           150
D8V6, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          40                           127
  CLUS_2                          30                           141
  CLUS_3                          35                           185
D8V7, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          20                           104
  CLUS_2                          41                           163
  CLUS_3                          15                            55
D8V8, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          25                            73
  CLUS_2                          12                            53
  CLUS_3                          19                           122
  CLUS_4                          20                            74
D8V9, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          20                            78
  CLUS_2                          18                            52
  CLUS_3                          16                            75
D8V10, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          24                            79
  CLUS_2                          21                            85
  CLUS_3                           9                            41
D8V11, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                          19                            91
  CLUS_2                          38                           154
  CLUS_3                          30                           116
D8V12, multiclass
        clus
vv       AMP PEAK  8(4Q13.3) MUTATED AMP PEAK  8(4Q13.3) WILD-TYPE
  CLUS_1                           0                             3
  CLUS_2                          29                           124
  CLUS_3                          58                           234

Clustering(9) Variable = Amp Peak  9(5p15.33) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                          111                            104
  CLUS_2                          115                             98
  CLUS_3                           67                             62
D9V2, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                          127                            106
  CLUS_2                          106                             93
  CLUS_3                           60                             65
D9V3, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           89                             70
  CLUS_2                           83                             81
  CLUS_3                          122                            110
D9V4, multiclass
D9V5, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           57                            106
  CLUS_2                          125                             84
  CLUS_3                          113                             74
D9V6, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           94                             73
  CLUS_2                           83                             88
  CLUS_3                          118                            102
D9V7, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           68                             56
  CLUS_2                          108                             96
  CLUS_3                           33                             37
D9V8, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           44                             54
  CLUS_2                           35                             30
  CLUS_3                           77                             64
  CLUS_4                           53                             41
D9V9, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           56                             42
  CLUS_2                           42                             28
  CLUS_3                           42                             49
D9V10, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           58                             45
  CLUS_2                           58                             48
  CLUS_3                           24                             26
D9V11, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                           52                             58
  CLUS_2                          121                             71
  CLUS_3                           71                             75
D9V12, multiclass
        clus
vv       AMP PEAK  9(5P15.33) MUTATED AMP PEAK  9(5P15.33) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           78                             75
  CLUS_3                          165                            127

Clustering(10) Variable = Amp Peak 10(6p22.3) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         116                            99
  CLUS_2                         113                           100
  CLUS_3                          56                            73
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                         124                           109
  CLUS_2                         111                            88
  CLUS_3                          50                            75
D10V3, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          73                            86
  CLUS_2                          86                            78
  CLUS_3                         126                           106
D10V4, multiclass
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          54                           109
  CLUS_2                         126                            83
  CLUS_3                         107                            80
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          98                            69
  CLUS_2                          76                            95
  CLUS_3                         113                           107
D10V7, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          68                            56
  CLUS_2                         107                            97
  CLUS_3                          25                            45
D10V8, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          49                            49
  CLUS_2                          22                            43
  CLUS_3                          82                            59
  CLUS_4                          47                            47
D10V9, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          48                            50
  CLUS_2                          35                            35
  CLUS_3                          49                            42
D10V10, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          49                            54
  CLUS_2                          57                            49
  CLUS_3                          26                            24
D10V11, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                          48                            62
  CLUS_2                         104                            88
  CLUS_3                          78                            68
D10V12, multiclass
        clus
vv       AMP PEAK 10(6P22.3) MUTATED AMP PEAK 10(6P22.3) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          81                            72
  CLUS_3                         147                           145

Clustering(11) Variable = Amp Peak 11(7q36.3) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         119                            96
  CLUS_2                         123                            90
  CLUS_3                          57                            72
D11V2, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                         125                           108
  CLUS_2                         112                            87
  CLUS_3                          62                            63
D11V3, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          92                            67
  CLUS_2                          80                            84
  CLUS_3                         126                           106
D11V4, multiclass
D11V5, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          60                           103
  CLUS_2                         124                            85
  CLUS_3                         116                            71
D11V6, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          98                            69
  CLUS_2                          84                            87
  CLUS_3                         118                           102
D11V7, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          58                            66
  CLUS_2                         114                            90
  CLUS_3                          32                            38
D11V8, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          55                            43
  CLUS_2                          35                            30
  CLUS_3                          66                            75
  CLUS_4                          48                            46
D11V9, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          50                            48
  CLUS_2                          35                            35
  CLUS_3                          47                            44
D11V10, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          53                            50
  CLUS_2                          54                            52
  CLUS_3                          25                            25
D11V11, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                          52                            58
  CLUS_2                         100                            92
  CLUS_3                          88                            58
D11V12, multiclass
        clus
vv       AMP PEAK 11(7Q36.3) MUTATED AMP PEAK 11(7Q36.3) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                          89                            64
  CLUS_3                         150                           142

Clustering(12) Variable = Amp Peak 12(8p11.21) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           83                            132
  CLUS_2                           63                            150
  CLUS_3                           49                             80
D12V2, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           80                            153
  CLUS_2                           85                            114
  CLUS_3                           30                             95
D12V3, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           50                            109
  CLUS_2                           51                            113
  CLUS_3                           93                            139
D12V4, multiclass
D12V5, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           40                            123
  CLUS_2                           67                            142
  CLUS_3                           89                             98
D12V6, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           74                             93
  CLUS_2                           55                            116
  CLUS_3                           67                            153
D12V7, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           35                             89
  CLUS_2                           80                            124
  CLUS_3                           24                             46
D12V8, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           31                             67
  CLUS_2                           23                             42
  CLUS_3                           47                             94
  CLUS_4                           38                             56
D12V9, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           33                             65
  CLUS_2                           20                             50
  CLUS_3                           37                             54
D12V10, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           30                             73
  CLUS_2                           45                             61
  CLUS_3                           15                             35
D12V11, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                           36                             74
  CLUS_2                           69                            123
  CLUS_3                           49                             97
D12V12, multiclass
        clus
vv       AMP PEAK 12(8P11.21) MUTATED AMP PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                            2                              1
  CLUS_2                           55                             98
  CLUS_3                           97                            195

Clustering(13) Variable = Amp Peak 13(8q24.21) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          142                             73
  CLUS_2                          183                             30
  CLUS_3                          113                             16
D13V2, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          205                             28
  CLUS_2                          140                             59
  CLUS_3                           93                             32
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          132                             27
  CLUS_2                          129                             35
  CLUS_3                          176                             56
D13V4, multiclass
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          106                             57
  CLUS_2                          203                              6
  CLUS_3                          130                             57
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                          118                             49
  CLUS_2                          134                             37
  CLUS_3                          186                             34
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           98                             26
  CLUS_2                          160                             44
  CLUS_3                           57                             13
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           75                             23
  CLUS_2                           55                             10
  CLUS_3                          112                             29
  CLUS_4                           73                             21
D13V9, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           87                             11
  CLUS_2                           64                              6
  CLUS_3                           57                             34
D13V10, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           92                             11
  CLUS_2                           74                             32
  CLUS_3                           42                              8
D13V11, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           91                             19
  CLUS_2                          154                             38
  CLUS_3                          108                             38
D13V12, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                          113                             40
  CLUS_3                          239                             53

Clustering(14) Variable = Amp Peak 14(10p15.3) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           96                            119
  CLUS_2                           89                            124
  CLUS_3                           53                             76
D14V2, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                          103                            130
  CLUS_2                           92                            107
  CLUS_3                           43                             82
D14V3, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           71                             88
  CLUS_2                           58                            106
  CLUS_3                          108                            124
D14V4, multiclass
D14V5, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           46                            117
  CLUS_2                           76                            133
  CLUS_3                          117                             70
D14V6, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           94                             73
  CLUS_2                           60                            111
  CLUS_3                           84                            136
D14V7, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           48                             76
  CLUS_2                           94                            110
  CLUS_3                           28                             42
D14V8, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           37                             61
  CLUS_2                           24                             41
  CLUS_3                           63                             78
  CLUS_4                           46                             48
D14V9, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           41                             57
  CLUS_2                           23                             47
  CLUS_3                           41                             50
D14V10, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           43                             60
  CLUS_2                           46                             60
  CLUS_3                           16                             34
D14V11, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                           43                             67
  CLUS_2                           85                            107
  CLUS_3                           60                             86
D14V12, multiclass
        clus
vv       AMP PEAK 14(10P15.3) MUTATED AMP PEAK 14(10P15.3) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           65                             88
  CLUS_3                          123                            169

Clustering(15) Variable = Amp Peak 15(10q22.3) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           67                            148
  CLUS_2                           62                            151
  CLUS_3                           46                             83
D15V2, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           81                            152
  CLUS_2                           56                            143
  CLUS_3                           38                             87
D15V3, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           46                            113
  CLUS_2                           56                            108
  CLUS_3                           73                            159
D15V4, multiclass
D15V5, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           43                            120
  CLUS_2                           67                            142
  CLUS_3                           65                            122
D15V6, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           51                            116
  CLUS_2                           54                            117
  CLUS_3                           70                            150
D15V7, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           35                             89
  CLUS_2                           65                            139
  CLUS_3                           19                             51
D15V8, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           28                             70
  CLUS_2                           20                             45
  CLUS_3                           41                            100
  CLUS_4                           30                             64
D15V9, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           35                             63
  CLUS_2                           22                             48
  CLUS_3                           22                             69
D15V10, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           36                             67
  CLUS_2                           28                             78
  CLUS_3                           15                             35
D15V11, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                           30                             80
  CLUS_2                           72                            120
  CLUS_3                           41                            105
D15V12, multiclass
        clus
vv       AMP PEAK 15(10Q22.3) MUTATED AMP PEAK 15(10Q22.3) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           44                            109
  CLUS_3                           98                            194

Clustering(16) Variable = Amp Peak 16(11q14.1) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           80                            135
  CLUS_2                          111                            102
  CLUS_3                           54                             75
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                          115                            118
  CLUS_2                           78                            121
  CLUS_3                           52                             73
D16V3, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           71                             88
  CLUS_2                           69                             95
  CLUS_3                          104                            128
D16V4, multiclass
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           48                            115
  CLUS_2                          125                             84
  CLUS_3                           74                            113
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           76                             91
  CLUS_2                           61                            110
  CLUS_3                          109                            111
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           53                             71
  CLUS_2                           94                            110
  CLUS_3                           25                             45
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           50                             48
  CLUS_2                           29                             36
  CLUS_3                           61                             80
  CLUS_4                           32                             62
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           56                             42
  CLUS_2                           36                             34
  CLUS_3                           33                             58
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           55                             48
  CLUS_2                           42                             64
  CLUS_3                           28                             22
D16V11, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           41                             69
  CLUS_2                           94                             98
  CLUS_3                           69                             77
D16V12, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           69                             84
  CLUS_3                          134                            158

Clustering(17) Variable = Amp Peak 17(12p13.33) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           134                              81
  CLUS_2                           112                             101
  CLUS_3                            64                              65
D17V2, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           122                             111
  CLUS_2                           129                              70
  CLUS_3                            59                              66
D17V3, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            81                              78
  CLUS_2                            91                              73
  CLUS_3                           137                              95
D17V4, multiclass
D17V5, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            64                              99
  CLUS_2                           111                              98
  CLUS_3                           136                              51
D17V6, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           117                              50
  CLUS_2                            92                              79
  CLUS_3                           102                             118
D17V7, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            68                              56
  CLUS_2                           118                              86
  CLUS_3                            31                              39
D17V8, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            59                              39
  CLUS_2                            31                              34
  CLUS_3                            72                              69
  CLUS_4                            55                              39
D17V9, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            50                              48
  CLUS_2                            31                              39
  CLUS_3                            61                              30
D17V10, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            48                              55
  CLUS_2                            67                              39
  CLUS_3                            27                              23
D17V11, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            61                              49
  CLUS_2                           100                              92
  CLUS_3                            85                              61
D17V12, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                             1                               2
  CLUS_2                            87                              66
  CLUS_3                           158                             134

Clustering(18) Variable = Amp Peak 18(12p12.1) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          120                             95
  CLUS_2                          103                            110
  CLUS_3                           70                             59
D18V2, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          120                            113
  CLUS_2                          119                             80
  CLUS_3                           54                             71
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           84                             75
  CLUS_2                           89                             75
  CLUS_3                          119                            113
D18V4, multiclass
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           59                            104
  CLUS_2                           98                            111
  CLUS_3                          137                             50
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                          116                             51
  CLUS_2                           80                             91
  CLUS_3                           98                            122
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           67                             57
  CLUS_2                          104                            100
  CLUS_3                           34                             36
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           44                             54
  CLUS_2                           28                             37
  CLUS_3                           74                             67
  CLUS_4                           59                             35
D18V9, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           47                             51
  CLUS_2                           31                             39
  CLUS_3                           58                             33
D18V10, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           50                             53
  CLUS_2                           64                             42
  CLUS_3                           22                             28
D18V11, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                           63                             47
  CLUS_2                           91                            101
  CLUS_3                           81                             65
D18V12, multiclass
        clus
vv       AMP PEAK 18(12P12.1) MUTATED AMP PEAK 18(12P12.1) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           85                             68
  CLUS_3                          150                            142

Clustering(19) Variable = Amp Peak 19(14q11.2) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           71                            144
  CLUS_2                           47                            166
  CLUS_3                           24                            105
D19V2, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           51                            182
  CLUS_2                           62                            137
  CLUS_3                           29                             96
D19V3, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           45                            114
  CLUS_2                           35                            129
  CLUS_3                           61                            171
D19V4, multiclass
D19V5, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           33                            130
  CLUS_2                           52                            157
  CLUS_3                           57                            130
D19V6, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           51                            116
  CLUS_2                           36                            135
  CLUS_3                           55                            165
D19V7, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           28                             96
  CLUS_2                           49                            155
  CLUS_3                           10                             60
D19V8, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           26                             72
  CLUS_2                           10                             55
  CLUS_3                           26                            115
  CLUS_4                           25                             69
D19V9, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           21                             77
  CLUS_2                           18                             52
  CLUS_3                           27                             64
D19V10, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           20                             83
  CLUS_2                           30                             76
  CLUS_3                           16                             34
D19V11, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                           23                             87
  CLUS_2                           50                            142
  CLUS_3                           43                            103
D19V12, multiclass
        clus
vv       AMP PEAK 19(14Q11.2) MUTATED AMP PEAK 19(14Q11.2) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           46                            107
  CLUS_3                           70                            222

Clustering(20) Variable = Amp Peak 20(15q26.3) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           58                            157
  CLUS_2                           70                            143
  CLUS_3                           28                            101
D20V2, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           64                            169
  CLUS_2                           56                            143
  CLUS_3                           36                             89
D20V3, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           50                            109
  CLUS_2                           44                            120
  CLUS_3                           61                            171
D20V4, multiclass
D20V5, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           27                            136
  CLUS_2                           92                            117
  CLUS_3                           37                            150
D20V6, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           43                            124
  CLUS_2                           47                            124
  CLUS_3                           66                            154
D20V7, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           37                             87
  CLUS_2                           59                            145
  CLUS_3                           18                             52
D20V8, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           34                             64
  CLUS_2                           24                             41
  CLUS_3                           35                            106
  CLUS_4                           21                             73
D20V9, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           27                             71
  CLUS_2                           24                             46
  CLUS_3                           20                             71
D20V10, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           26                             77
  CLUS_2                           29                             77
  CLUS_3                           16                             34
D20V11, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                           20                             90
  CLUS_2                           54                            138
  CLUS_3                           42                            104
D20V12, multiclass
        clus
vv       AMP PEAK 20(15Q26.3) MUTATED AMP PEAK 20(15Q26.3) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           47                            106
  CLUS_3                           69                            223

Clustering(21) Variable = Amp Peak 21(17q25.3) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           76                            139
  CLUS_2                           74                            139
  CLUS_3                           53                             76
D21V2, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           94                            139
  CLUS_2                           68                            131
  CLUS_3                           41                             84
D21V3, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           56                            103
  CLUS_2                           61                            103
  CLUS_3                           86                            146
D21V4, multiclass
D21V5, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           56                            107
  CLUS_2                           92                            117
  CLUS_3                           57                            130
D21V6, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           62                            105
  CLUS_2                           61                            110
  CLUS_3                           82                            138
D21V7, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           51                             73
  CLUS_2                           68                            136
  CLUS_3                           30                             40
D21V8, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           28                             70
  CLUS_2                           27                             38
  CLUS_3                           56                             85
  CLUS_4                           38                             56
D21V9, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           44                             54
  CLUS_2                           29                             41
  CLUS_3                           24                             67
D21V10, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           48                             55
  CLUS_2                           35                             71
  CLUS_3                           14                             36
D21V11, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           44                             66
  CLUS_2                           74                            118
  CLUS_3                           49                             97
D21V12, multiclass
        clus
vv       AMP PEAK 21(17Q25.3) MUTATED AMP PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           50                            103
  CLUS_3                          117                            175

Clustering(22) Variable = Amp Peak 22(18q11.2) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           52                            163
  CLUS_2                           54                            159
  CLUS_3                           31                             98
D22V2, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           57                            176
  CLUS_2                           56                            143
  CLUS_3                           24                            101
D22V3, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           38                            121
  CLUS_2                           40                            124
  CLUS_3                           58                            174
D22V4, multiclass
D22V5, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           22                            141
  CLUS_2                           47                            162
  CLUS_3                           68                            119
D22V6, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           57                            110
  CLUS_2                           27                            144
  CLUS_3                           53                            167
D22V7, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           32                             92
  CLUS_2                           53                            151
  CLUS_3                           10                             60
D22V8, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           20                             78
  CLUS_2                           15                             50
  CLUS_3                           31                            110
  CLUS_4                           29                             65
D22V9, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           31                             67
  CLUS_2                           12                             58
  CLUS_3                           22                             69
D22V10, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           33                             70
  CLUS_2                           26                             80
  CLUS_3                            6                             44
D22V11, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                           31                             79
  CLUS_2                           48                            144
  CLUS_3                           29                            117
D22V12, multiclass
        clus
vv       AMP PEAK 22(18Q11.2) MUTATED AMP PEAK 22(18Q11.2) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           32                            121
  CLUS_3                           75                            217

Clustering(23) Variable = Amp Peak 23(19p13.12) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                           134                              81
  CLUS_2                           113                             100
  CLUS_3                            53                              76
D23V2, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                           104                             129
  CLUS_2                           126                              73
  CLUS_3                            70                              55
D23V3, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            84                              75
  CLUS_2                            77                              87
  CLUS_3                           138                              94
D23V4, multiclass
D23V5, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            68                              95
  CLUS_2                            89                             120
  CLUS_3                           144                              43
D23V6, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                           114                              53
  CLUS_2                            71                             100
  CLUS_3                           115                             105
D23V7, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            57                              67
  CLUS_2                           131                              73
  CLUS_3                            26                              44
D23V8, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            56                              42
  CLUS_2                            36                              29
  CLUS_3                            57                              84
  CLUS_4                            65                              29
D23V9, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            52                              46
  CLUS_2                            33                              37
  CLUS_3                            56                              35
D23V10, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            50                              53
  CLUS_2                            65                              41
  CLUS_3                            26                              24
D23V11, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                            56                              54
  CLUS_2                           108                              84
  CLUS_3                            83                              63
D23V12, multiclass
        clus
vv       AMP PEAK 23(19P13.12) MUTATED AMP PEAK 23(19P13.12) WILD-TYPE
  CLUS_1                             1                               2
  CLUS_2                            84                              69
  CLUS_3                           162                             130

Clustering(24) Variable = Amp Peak 24(19q12) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                        124                           91
  CLUS_2                        124                           89
  CLUS_3                         60                           69
D24V2, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                        127                          106
  CLUS_2                        123                           76
  CLUS_3                         58                           67
D24V3, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         91                           68
  CLUS_2                         77                           87
  CLUS_3                        138                           94
D24V4, multiclass
D24V5, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         62                          101
  CLUS_2                         86                          123
  CLUS_3                        161                           26
D24V6, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                        124                           43
  CLUS_2                         67                          104
  CLUS_3                        118                          102
D24V7, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         59                           65
  CLUS_2                        121                           83
  CLUS_3                         33                           37
D24V8, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         53                           45
  CLUS_2                         32                           33
  CLUS_3                         74                           67
  CLUS_4                         54                           40
D24V9, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         58                           40
  CLUS_2                         35                           35
  CLUS_3                         54                           37
D24V10, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         61                           42
  CLUS_2                         62                           44
  CLUS_3                         24                           26
D24V11, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                         56                           54
  CLUS_2                        114                           78
  CLUS_3                         82                           64
D24V12, multiclass
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  CLUS_1                          1                            2
  CLUS_2                         86                           67
  CLUS_3                        165                          127

Clustering(25) Variable = Amp Peak 25(19q13.2) mutation analysis
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           90                            125
  CLUS_2                           91                            122
  CLUS_3                           53                             76
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                          100                            133
  CLUS_2                           93                            106
  CLUS_3                           41                             84
D25V3, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           63                             96
  CLUS_2                           73                             91
  CLUS_3                           96                            136
D25V4, multiclass
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           48                            115
  CLUS_2                           73                            136
  CLUS_3                          114                             73
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           91                             76
  CLUS_2                           56                            115
  CLUS_3                           88                            132
D25V7, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           50                             74
  CLUS_2                           91                            113
  CLUS_3                           27                             43
D25V8, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           40                             58
  CLUS_2                           25                             40
  CLUS_3                           56                             85
  CLUS_4                           47                             47
D25V9, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           42                             56
  CLUS_2                           24                             46
  CLUS_3                           39                             52
D25V10, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           42                             61
  CLUS_2                           45                             61
  CLUS_3                           18                             32
D25V11, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                           46                             64
  CLUS_2                           83                            109
  CLUS_3                           62                             84
D25V12, multiclass
        clus
vv       AMP PEAK 25(19Q13.2) MUTATED AMP PEAK 25(19Q13.2) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           70                             83
  CLUS_3                          120                            172

Clustering(26) Variable = Amp Peak 26(20p13) mutation analysis
D26V1, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                        126                           89
  CLUS_2                        108                          105
  CLUS_3                         65                           64
D26V2, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                        120                          113
  CLUS_2                        128                           71
  CLUS_3                         51                           74
D26V3, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                         86                           73
  CLUS_2                         79                           85
  CLUS_3                        133                           99
D26V4, multiclass
D26V5, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                         66                           97
  CLUS_2                         95                          114
  CLUS_3                        139                           48
D26V6, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                        123                           44
  CLUS_2                         78                           93
  CLUS_3                         98                          122
D26V7, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                         63                           61
  CLUS_2                        116                           88
  CLUS_3                         38                           32
D26V8, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                         48                           50
  CLUS_2                         33                           32
  CLUS_3                         82                           59
  CLUS_4                         54                           40
D26V9, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                         49                           49
  CLUS_2                         32                           38
  CLUS_3                         59                           32
D26V10, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                         51                           52
  CLUS_2                         66                           40
  CLUS_3                         23                           27
D26V11, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                         67                           43
  CLUS_2                        102                           90
  CLUS_3                         74                           72
D26V12, multiclass
        clus
vv       AMP PEAK 26(20P13) MUTATED AMP PEAK 26(20P13) WILD-TYPE
  CLUS_1                          2                            1
  CLUS_2                         80                           73
  CLUS_3                        161                          131

Clustering(27) Variable = Amp Peak 27(20q11.21) mutation analysis
D27V1, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                           142                              73
  CLUS_2                           108                             105
  CLUS_3                            74                              55
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                           132                             101
  CLUS_2                           143                              56
  CLUS_3                            49                              76
D27V3, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                            96                              63
  CLUS_2                            86                              78
  CLUS_3                           142                              90
D27V4, multiclass
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                            72                              91
  CLUS_2                            92                             117
  CLUS_3                           162                              25
D27V6, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                           136                              31
  CLUS_2                            86                              85
  CLUS_3                           104                             116
D27V7, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                            66                              58
  CLUS_2                           127                              77
  CLUS_3                            37                              33
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                            51                              47
  CLUS_2                            30                              35
  CLUS_3                            85                              56
  CLUS_4                            64                              30
D27V9, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                            60                              38
  CLUS_2                            29                              41
  CLUS_3                            66                              25
D27V10, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                            61                              42
  CLUS_2                            71                              35
  CLUS_3                            23                              27
D27V11, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                            70                              40
  CLUS_2                           115                              77
  CLUS_3                            83                              63
D27V12, multiclass
        clus
vv       AMP PEAK 27(20Q11.21) MUTATED AMP PEAK 27(20Q11.21) WILD-TYPE
  CLUS_1                             2                               1
  CLUS_2                            93                              60
  CLUS_3                           173                             119

Clustering(28) Variable = Amp Peak 28(20q13.33) mutation analysis
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                           164                              51
  CLUS_2                           133                              80
  CLUS_3                            88                              41
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                           157                              76
  CLUS_2                           158                              41
  CLUS_3                            70                              55
D28V3, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                           105                              54
  CLUS_2                           116                              48
  CLUS_3                           163                              69
D28V4, multiclass
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            82                              81
  CLUS_2                           138                              71
  CLUS_3                           167                              20
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                           144                              23
  CLUS_2                           106                              65
  CLUS_3                           137                              83
D28V7, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            86                              38
  CLUS_2                           144                              60
  CLUS_3                            45                              25
D28V8, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            62                              36
  CLUS_2                            43                              22
  CLUS_3                           100                              41
  CLUS_4                            70                              24
D28V9, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            66                              32
  CLUS_2                            43                              27
  CLUS_3                            73                              18
D28V10, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            70                              33
  CLUS_2                            82                              24
  CLUS_3                            30                              20
D28V11, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                            81                              29
  CLUS_2                           140                              52
  CLUS_3                            98                              48
D28V12, multiclass
        clus
vv       AMP PEAK 28(20Q13.33) MUTATED AMP PEAK 28(20Q13.33) WILD-TYPE
  CLUS_1                             3                               0
  CLUS_2                           104                              49
  CLUS_3                           212                              80

Clustering(29) Variable = Amp Peak 29(22q12.2) mutation analysis
D29V1, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           34                            181
  CLUS_2                           37                            176
  CLUS_3                           17                            112
D29V2, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           39                            194
  CLUS_2                           32                            167
  CLUS_3                           17                            108
D29V3, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           27                            132
  CLUS_2                           17                            147
  CLUS_3                           42                            190
D29V4, multiclass
D29V5, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           10                            153
  CLUS_2                           44                            165
  CLUS_3                           34                            153
D29V6, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           28                            139
  CLUS_2                           14                            157
  CLUS_3                           46                            174
D29V7, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           20                            104
  CLUS_2                           34                            170
  CLUS_3                           12                             58
D29V8, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           11                             87
  CLUS_2                           14                             51
  CLUS_3                           20                            121
  CLUS_4                           21                             73
D29V9, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           18                             80
  CLUS_2                            7                             63
  CLUS_3                           11                             80
D29V10, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           18                             85
  CLUS_2                           14                             92
  CLUS_3                            4                             46
D29V11, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                           15                             95
  CLUS_2                           39                            153
  CLUS_3                           17                            129
D29V12, multiclass
        clus
vv       AMP PEAK 29(22Q12.2) MUTATED AMP PEAK 29(22Q12.2) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           15                            138
  CLUS_3                           55                            237

Clustering(30) Variable = Amp Peak 30(Xp11.23) mutation analysis
D30V1, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           60                            155
  CLUS_2                           66                            147
  CLUS_3                           36                             93
D30V2, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           71                            162
  CLUS_2                           62                            137
  CLUS_3                           29                             96
D30V3, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           49                            110
  CLUS_2                           40                            124
  CLUS_3                           72                            160
D30V4, multiclass
D30V5, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                           55                            154
  CLUS_3                           78                            109
D30V6, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           72                             95
  CLUS_2                           37                            134
  CLUS_3                           53                            167
D30V7, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           35                             89
  CLUS_2                           58                            146
  CLUS_3                           17                             53
D30V8, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           25                             73
  CLUS_2                           24                             41
  CLUS_3                           31                            110
  CLUS_4                           30                             64
D30V9, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           33                             65
  CLUS_2                           17                             53
  CLUS_3                           31                             60
D30V10, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           36                             67
  CLUS_2                           33                             73
  CLUS_3                           12                             38
D30V11, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                           40                             70
  CLUS_2                           54                            138
  CLUS_3                           39                            107
D30V12, multiclass
        clus
vv       AMP PEAK 30(XP11.23) MUTATED AMP PEAK 30(XP11.23) WILD-TYPE
  CLUS_1                            3                              0
  CLUS_2                           40                            113
  CLUS_3                           90                            202

Clustering(31) Variable = Amp Peak 31(Xq28) mutation analysis
D31V1, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        80                         135
  CLUS_2                        94                         119
  CLUS_3                        47                          82
D31V2, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                       100                         133
  CLUS_2                        73                         126
  CLUS_3                        48                          77
D31V3, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        61                          98
  CLUS_2                        68                          96
  CLUS_3                        91                         141
D31V4, multiclass
D31V5, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        42                         121
  CLUS_2                       102                         107
  CLUS_3                        78                         109
D31V6, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        64                         103
  CLUS_2                        60                         111
  CLUS_3                        98                         122
D31V7, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        53                          71
  CLUS_2                        82                         122
  CLUS_3                        24                          46
D31V8, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        36                          62
  CLUS_2                        22                          43
  CLUS_3                        58                          83
  CLUS_4                        43                          51
D31V9, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        43                          55
  CLUS_2                        27                          43
  CLUS_3                        32                          59
D31V10, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        43                          60
  CLUS_2                        38                          68
  CLUS_3                        21                          29
D31V11, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        41                          69
  CLUS_2                        79                         113
  CLUS_3                        57                          89
D31V12, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                         1                           2
  CLUS_2                        55                          98
  CLUS_3                       121                         171

Clustering(32) Variable = Del Peak  1(1p36.11) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                          103                            112
  CLUS_2                           99                            114
  CLUS_3                           62                             67
D32V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                          114                            119
  CLUS_2                           91                            108
  CLUS_3                           59                             66
D32V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           73                             86
  CLUS_2                           91                             73
  CLUS_3                           99                            133
D32V4, multiclass
D32V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           85                             78
  CLUS_2                          115                             94
  CLUS_3                           64                            123
D32V6, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           69                             98
  CLUS_2                           87                             84
  CLUS_3                          107                            113
D32V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           66                             58
  CLUS_2                           88                            116
  CLUS_3                           31                             39
D32V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           43                             55
  CLUS_2                           28                             37
  CLUS_3                           73                             68
  CLUS_4                           41                             53
D32V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           41                             57
  CLUS_2                           31                             39
  CLUS_3                           38                             53
D32V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           44                             59
  CLUS_2                           43                             63
  CLUS_3                           23                             27
D32V11, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           47                             63
  CLUS_2                           81                            111
  CLUS_3                           73                             73
D32V12, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                            3                              0
  CLUS_2                           74                             79
  CLUS_3                          124                            168

Clustering(33) Variable = Del Peak  2(1q32.3) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          26                           189
  CLUS_2                          42                           171
  CLUS_3                          23                           106
D33V2, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          40                           193
  CLUS_2                          28                           171
  CLUS_3                          23                           102
D33V3, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          28                           131
  CLUS_2                          22                           142
  CLUS_3                          41                           191
D33V4, multiclass
D33V5, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          14                           149
  CLUS_2                          61                           148
  CLUS_3                          17                           170
D33V6, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          23                           144
  CLUS_2                          26                           145
  CLUS_3                          43                           177
D33V7, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          18                           106
  CLUS_2                          31                           173
  CLUS_3                          11                            59
D33V8, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          10                            88
  CLUS_2                          16                            49
  CLUS_3                          21                           120
  CLUS_4                          13                            81
D33V9, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          18                            80
  CLUS_2                          11                            59
  CLUS_3                           9                            82
D33V10, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          19                            84
  CLUS_2                          14                            92
  CLUS_3                           5                            45
D33V11, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                          19                            91
  CLUS_2                          33                           159
  CLUS_3                          22                           124
D33V12, multiclass
        clus
vv       DEL PEAK  2(1Q32.3) MUTATED DEL PEAK  2(1Q32.3) WILD-TYPE
  CLUS_1                           0                             3
  CLUS_2                          24                           129
  CLUS_3                          50                           242

Clustering(34) Variable = Del Peak  3(2p25.3) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          46                           169
  CLUS_2                          45                           168
  CLUS_3                          26                           103
D34V2, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          49                           184
  CLUS_2                          41                           158
  CLUS_3                          27                            98
D34V3, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          34                           125
  CLUS_2                          29                           135
  CLUS_3                          53                           179
D34V4, multiclass
D34V5, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          30                           133
  CLUS_2                          51                           158
  CLUS_3                          36                           151
D34V6, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          32                           135
  CLUS_2                          34                           137
  CLUS_3                          51                           169
D34V7, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          19                           105
  CLUS_2                          53                           151
  CLUS_3                          12                            58
D34V8, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          25                            73
  CLUS_2                          19                            46
  CLUS_3                          24                           117
  CLUS_4                          16                            78
D34V9, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          21                            77
  CLUS_2                          19                            51
  CLUS_3                          15                            76
D34V10, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          24                            79
  CLUS_2                          21                            85
  CLUS_3                          10                            40
D34V11, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                          23                            87
  CLUS_2                          40                           152
  CLUS_3                          33                           113
D34V12, multiclass
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  CLUS_1                           0                             3
  CLUS_2                          33                           120
  CLUS_3                          63                           229

Clustering(35) Variable = Del Peak  4(2q22.1) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          40                           175
  CLUS_2                          54                           159
  CLUS_3                          37                            92
D35V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          65                           168
  CLUS_2                          41                           158
  CLUS_3                          25                           100
D35V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          40                           119
  CLUS_2                          38                           126
  CLUS_3                          53                           179
D35V4, multiclass
D35V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          31                           132
  CLUS_2                          61                           148
  CLUS_3                          40                           147
D35V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          32                           135
  CLUS_2                          41                           130
  CLUS_3                          58                           162
D35V7, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          25                            99
  CLUS_2                          55                           149
  CLUS_3                          16                            54
D35V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          25                            73
  CLUS_2                          15                            50
  CLUS_3                          30                           111
  CLUS_4                          26                            68
D35V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          26                            72
  CLUS_2                          15                            55
  CLUS_3                          24                            67
D35V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          27                            76
  CLUS_2                          30                            76
  CLUS_3                           8                            42
D35V11, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          28                            82
  CLUS_2                          46                           146
  CLUS_3                          30                           116
D35V12, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          31                           122
  CLUS_3                          71                           221

Clustering(36) Variable = Del Peak  5(2q37.3) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          51                           164
  CLUS_2                          79                           134
  CLUS_3                          41                            88
D36V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          91                           142
  CLUS_2                          49                           150
  CLUS_3                          31                            94
D36V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          47                           112
  CLUS_2                          48                           116
  CLUS_3                          76                           156
D36V4, multiclass
D36V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          35                           128
  CLUS_2                          88                           121
  CLUS_3                          49                           138
D36V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          41                           126
  CLUS_2                          51                           120
  CLUS_3                          80                           140
D36V7, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          34                            90
  CLUS_2                          65                           139
  CLUS_3                          24                            46
D36V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          26                            72
  CLUS_2                          23                            42
  CLUS_3                          45                            96
  CLUS_4                          29                            65
D36V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          44                            54
  CLUS_2                          23                            47
  CLUS_3                          24                            67
D36V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          46                            57
  CLUS_2                          32                            74
  CLUS_3                          13                            37
D36V11, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          35                            75
  CLUS_2                          74                           118
  CLUS_3                          32                           114
D36V12, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           0                             3
  CLUS_2                          36                           117
  CLUS_3                         105                           187

Clustering(37) Variable = Del Peak  6(3p26.2) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          90                           125
  CLUS_2                          67                           146
  CLUS_3                          48                            81
D37V2, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          88                           145
  CLUS_2                          90                           109
  CLUS_3                          27                            98
D37V3, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          54                           105
  CLUS_2                          47                           117
  CLUS_3                         103                           129
D37V4, multiclass
D37V5, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          44                           119
  CLUS_2                          71                           138
  CLUS_3                          91                            96
D37V6, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          84                            83
  CLUS_2                          48                           123
  CLUS_3                          73                           147
D37V7, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          42                            82
  CLUS_2                          72                           132
  CLUS_3                          21                            49
D37V8, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          25                            73
  CLUS_2                          24                            41
  CLUS_3                          52                            89
  CLUS_4                          34                            60
D37V9, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          40                            58
  CLUS_2                          15                            55
  CLUS_3                          44                            47
D37V10, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          44                            59
  CLUS_2                          45                            61
  CLUS_3                          10                            40
D37V11, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                          44                            66
  CLUS_2                          74                           118
  CLUS_3                          50                            96
D37V12, multiclass
        clus
vv       DEL PEAK  6(3P26.2) MUTATED DEL PEAK  6(3P26.2) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                          54                            99
  CLUS_3                         113                           179

Clustering(38) Variable = Del Peak  7(4q22.1) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                         157                            58
  CLUS_2                         138                            75
  CLUS_3                          77                            52
D38V2, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                         148                            85
  CLUS_2                         140                            59
  CLUS_3                          84                            41
D38V3, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                         106                            53
  CLUS_2                         108                            56
  CLUS_3                         157                            75
D38V4, multiclass
D38V5, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                         107                            56
  CLUS_2                         128                            81
  CLUS_3                         138                            49
D38V6, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                         117                            50
  CLUS_2                         110                            61
  CLUS_3                         145                            75
D38V7, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          77                            47
  CLUS_2                         148                            56
  CLUS_3                          39                            31
D38V8, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          70                            28
  CLUS_2                          40                            25
  CLUS_3                          84                            57
  CLUS_4                          70                            24
D38V9, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          62                            36
  CLUS_2                          45                            25
  CLUS_3                          69                            22
D38V10, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          65                            38
  CLUS_2                          76                            30
  CLUS_3                          35                            15
D38V11, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                          66                            44
  CLUS_2                         130                            62
  CLUS_3                         107                            39
D38V12, multiclass
        clus
vv       DEL PEAK  7(4Q22.1) MUTATED DEL PEAK  7(4Q22.1) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                         114                            39
  CLUS_3                         187                           105

Clustering(39) Variable = Del Peak  8(4q34.3) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                         166                            49
  CLUS_2                         155                            58
  CLUS_3                          81                            48
D39V2, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                         159                            74
  CLUS_2                         153                            46
  CLUS_3                          90                            35
D39V3, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                         121                            38
  CLUS_2                         105                            59
  CLUS_3                         175                            57
D39V4, multiclass
D39V5, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                         110                            53
  CLUS_2                         159                            50
  CLUS_3                         135                            52
D39V6, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                         125                            42
  CLUS_2                         118                            53
  CLUS_3                         160                            60
D39V7, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          89                            35
  CLUS_2                         152                            52
  CLUS_3                          48                            22
D39V8, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          77                            21
  CLUS_2                          48                            17
  CLUS_3                          95                            46
  CLUS_4                          69                            25
D39V9, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          61                            37
  CLUS_2                          54                            16
  CLUS_3                          71                            20
D39V10, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          66                            37
  CLUS_2                          81                            25
  CLUS_3                          39                            11
D39V11, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                          74                            36
  CLUS_2                         138                            54
  CLUS_3                         110                            36
D39V12, multiclass
        clus
vv       DEL PEAK  8(4Q34.3) MUTATED DEL PEAK  8(4Q34.3) WILD-TYPE
  CLUS_1                           3                             0
  CLUS_2                         116                            37
  CLUS_3                         203                            89

Clustering(40) Variable = Del Peak  9(5q11.2) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                         128                            87
  CLUS_2                         132                            81
  CLUS_3                          74                            55
D40V2, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                         148                            85
  CLUS_2                         120                            79
  CLUS_3                          66                            59
D40V3, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                         100                            59
  CLUS_2                          92                            72
  CLUS_3                         142                            90
D40V4, multiclass
D40V5, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                          67                            96
  CLUS_2                         147                            62
  CLUS_3                         121                            66
D40V6, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                         109                            58
  CLUS_2                          82                            89
  CLUS_3                         143                            77
D40V7, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                          74                            50
  CLUS_2                         121                            83
  CLUS_3                          44                            26
D40V8, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                          56                            42
  CLUS_2                          39                            26
  CLUS_3                          88                            53
  CLUS_4                          56                            38
D40V9, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                          61                            37
  CLUS_2                          34                            36
  CLUS_3                          53                            38
D40V10, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                          64                            39
  CLUS_2                          57                            49
  CLUS_3                          27                            23
D40V11, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                          70                            40
  CLUS_2                         126                            66
  CLUS_3                          76                            70
D40V12, multiclass
        clus
vv       DEL PEAK  9(5Q11.2) MUTATED DEL PEAK  9(5Q11.2) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                          81                            72
  CLUS_3                         190                           102

Clustering(41) Variable = Del Peak 10(5q13.2) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                         150                            65
  CLUS_2                         156                            57
  CLUS_3                          91                            38
D41V2, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                         170                            63
  CLUS_2                         140                            59
  CLUS_3                          87                            38
D41V3, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                         116                            43
  CLUS_2                         117                            47
  CLUS_3                         164                            68
D41V4, multiclass
D41V5, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                          84                            79
  CLUS_2                         181                            28
  CLUS_3                         133                            54
D41V6, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                         122                            45
  CLUS_2                         110                            61
  CLUS_3                         165                            55
D41V7, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                          88                            36
  CLUS_2                         142                            62
  CLUS_3                          50                            20
D41V8, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                          68                            30
  CLUS_2                          49                            16
  CLUS_3                          98                            43
  CLUS_4                          65                            29
D41V9, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                          74                            24
  CLUS_2                          48                            22
  CLUS_3                          61                            30
D41V10, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                          79                            24
  CLUS_2                          68                            38
  CLUS_3                          36                            14
D41V11, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                          83                            27
  CLUS_2                         143                            49
  CLUS_3                          96                            50
D41V12, multiclass
        clus
vv       DEL PEAK 10(5Q13.2) MUTATED DEL PEAK 10(5Q13.2) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                         101                            52
  CLUS_3                         220                            72

Clustering(42) Variable = Del Peak 11(6q27) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       133                          82
  CLUS_2                       141                          72
  CLUS_3                        87                          42
D42V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       156                          77
  CLUS_2                       115                          84
  CLUS_3                        90                          35
D42V3, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       103                          56
  CLUS_2                       115                          49
  CLUS_3                       143                          89
D42V4, multiclass
D42V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       114                          49
  CLUS_2                       159                          50
  CLUS_3                        89                          98
D42V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        85                          82
  CLUS_2                       128                          43
  CLUS_3                       148                          72
D42V7, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        79                          45
  CLUS_2                       129                          75
  CLUS_3                        47                          23
D42V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        60                          38
  CLUS_2                        44                          21
  CLUS_3                        88                          53
  CLUS_4                        63                          31
D42V9, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        63                          35
  CLUS_2                        52                          18
  CLUS_3                        41                          50
D42V10, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        70                          33
  CLUS_2                        55                          51
  CLUS_3                        31                          19
D42V11, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        66                          44
  CLUS_2                       126                          66
  CLUS_3                        95                          51
D42V12, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                         0                           3
  CLUS_2                       101                          52
  CLUS_3                       186                         106

Clustering(43) Variable = Del Peak 12(7p22.1) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          88                           127
  CLUS_2                          98                           115
  CLUS_3                          56                            73
D43V2, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                         110                           123
  CLUS_2                          91                           108
  CLUS_3                          41                            84
D43V3, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          74                            85
  CLUS_2                          70                            94
  CLUS_3                          98                           134
D43V4, multiclass
D43V5, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          45                           118
  CLUS_2                         135                            74
  CLUS_3                          63                           124
D43V6, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          70                            97
  CLUS_2                          77                            94
  CLUS_3                          95                           125
D43V7, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          54                            70
  CLUS_2                          92                           112
  CLUS_3                          28                            42
D43V8, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          42                            56
  CLUS_2                          30                            35
  CLUS_3                          65                            76
  CLUS_4                          37                            57
D43V9, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          52                            46
  CLUS_2                          34                            36
  CLUS_3                          39                            52
D43V10, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          57                            46
  CLUS_2                          49                            57
  CLUS_3                          19                            31
D43V11, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                          53                            57
  CLUS_2                          87                           105
  CLUS_3                          64                            82
D43V12, multiclass
        clus
vv       DEL PEAK 12(7P22.1) MUTATED DEL PEAK 12(7P22.1) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                          68                            85
  CLUS_3                         135                           157

Clustering(44) Variable = Del Peak 13(8p23.3) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                         132                            83
  CLUS_2                         154                            59
  CLUS_3                          87                            42
D44V2, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                         171                            62
  CLUS_2                         130                            69
  CLUS_3                          72                            53
D44V3, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                         110                            49
  CLUS_2                         113                            51
  CLUS_3                         151                            81
D44V4, multiclass
D44V5, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          75                            88
  CLUS_2                         163                            46
  CLUS_3                         137                            50
D44V6, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                         111                            56
  CLUS_2                         104                            67
  CLUS_3                         159                            61
D44V7, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          83                            41
  CLUS_2                         141                            63
  CLUS_3                          46                            24
D44V8, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          63                            35
  CLUS_2                          45                            20
  CLUS_3                          94                            47
  CLUS_4                          68                            26
D44V9, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          71                            27
  CLUS_2                          49                            21
  CLUS_3                          65                            26
D44V10, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          76                            27
  CLUS_2                          77                            29
  CLUS_3                          32                            18
D44V11, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                          80                            30
  CLUS_2                         131                            61
  CLUS_3                          93                            53
D44V12, multiclass
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                          96                            57
  CLUS_3                         206                            86

Clustering(45) Variable = Del Peak 14(8p21.2) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                         137                            78
  CLUS_2                         158                            55
  CLUS_3                          95                            34
D45V2, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                         177                            56
  CLUS_2                         136                            63
  CLUS_3                          77                            48
D45V3, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                         119                            40
  CLUS_2                         116                            48
  CLUS_3                         155                            77
D45V4, multiclass
D45V5, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                          84                            79
  CLUS_2                         165                            44
  CLUS_3                         143                            44
D45V6, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                         114                            53
  CLUS_2                         116                            55
  CLUS_3                         162                            58
D45V7, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                          83                            41
  CLUS_2                         150                            54
  CLUS_3                          49                            21
D45V8, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                          69                            29
  CLUS_2                          45                            20
  CLUS_3                         100                            41
  CLUS_4                          68                            26
D45V9, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                          78                            20
  CLUS_2                          54                            16
  CLUS_3                          64                            27
D45V10, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                          81                            22
  CLUS_2                          79                            27
  CLUS_3                          36                            14
D45V11, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                          80                            30
  CLUS_2                         135                            57
  CLUS_3                         101                            45
D45V12, multiclass
        clus
vv       DEL PEAK 14(8P21.2) MUTATED DEL PEAK 14(8P21.2) WILD-TYPE
  CLUS_1                           2                             1
  CLUS_2                         108                            45
  CLUS_3                         206                            86

Clustering(46) Variable = Del Peak 15(9p24.3) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                         110                           105
  CLUS_2                          70                           143
  CLUS_3                          66                            63
D46V2, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          98                           135
  CLUS_2                         100                            99
  CLUS_3                          48                            77
D46V3, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          68                            91
  CLUS_2                          76                            88
  CLUS_3                         100                           132
D46V4, multiclass
D46V5, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          67                            96
  CLUS_2                          81                           128
  CLUS_3                          99                            88
D46V6, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          88                            79
  CLUS_2                          84                            87
  CLUS_3                          75                           145
D46V7, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          55                            69
  CLUS_2                          82                           122
  CLUS_3                          30                            40
D46V8, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          41                            57
  CLUS_2                          25                            40
  CLUS_3                          67                            74
  CLUS_4                          34                            60
D46V9, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          39                            59
  CLUS_2                          26                            44
  CLUS_3                          49                            42
D46V10, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          40                            63
  CLUS_2                          50                            56
  CLUS_3                          24                            26
D46V11, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                          50                            60
  CLUS_2                          72                           120
  CLUS_3                          73                            73
D46V12, multiclass
        clus
vv       DEL PEAK 15(9P24.3) MUTATED DEL PEAK 15(9P24.3) WILD-TYPE
  CLUS_1                           3                             0
  CLUS_2                          75                            78
  CLUS_3                         117                           175

Clustering(47) Variable = Del Peak 16(9q21.11) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                          119                             96
  CLUS_2                           87                            126
  CLUS_3                           61                             68
D47V2, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           94                            139
  CLUS_2                          115                             84
  CLUS_3                           58                             67
D47V3, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           66                             93
  CLUS_2                           82                             82
  CLUS_3                          119                            113
D47V4, multiclass
D47V5, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           69                             94
  CLUS_2                           66                            143
  CLUS_3                          133                             54
D47V6, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                          109                             58
  CLUS_2                           65                            106
  CLUS_3                           94                            126
D47V7, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           55                             69
  CLUS_2                           99                            105
  CLUS_3                           23                             47
D47V8, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           46                             52
  CLUS_2                           26                             39
  CLUS_3                           61                             80
  CLUS_4                           44                             50
D47V9, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           42                             56
  CLUS_2                           25                             45
  CLUS_3                           57                             34
D47V10, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           46                             57
  CLUS_2                           55                             51
  CLUS_3                           23                             27
D47V11, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                           58                             52
  CLUS_2                           79                            113
  CLUS_3                           75                             71
D47V12, multiclass
        clus
vv       DEL PEAK 16(9Q21.11) MUTATED DEL PEAK 16(9Q21.11) WILD-TYPE
  CLUS_1                            2                              1
  CLUS_2                           77                             76
  CLUS_3                          133                            159

Clustering(48) Variable = Del Peak 17(9q34.13) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          141                             74
  CLUS_2                          123                             90
  CLUS_3                           65                             64
D48V2, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          121                            112
  CLUS_2                          129                             70
  CLUS_3                           79                             46
D48V3, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           94                             65
  CLUS_2                           97                             67
  CLUS_3                          137                             95
D48V4, multiclass
D48V5, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           82                             81
  CLUS_2                          105                            104
  CLUS_3                          143                             44
D48V6, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                          112                             55
  CLUS_2                           87                             84
  CLUS_3                          131                             89
D48V7, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           67                             57
  CLUS_2                          122                             82
  CLUS_3                           37                             33
D48V8, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           62                             36
  CLUS_2                           31                             34
  CLUS_3                           80                             61
  CLUS_4                           53                             41
D48V9, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           57                             41
  CLUS_2                           37                             33
  CLUS_3                           60                             31
D48V10, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           62                             41
  CLUS_2                           58                             48
  CLUS_3                           34                             16
D48V11, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                           60                             50
  CLUS_2                          110                             82
  CLUS_3                           99                             47
D48V12, multiclass
        clus
vv       DEL PEAK 17(9Q34.13) MUTATED DEL PEAK 17(9Q34.13) WILD-TYPE
  CLUS_1                            2                              1
  CLUS_2                          101                             52
  CLUS_3                          166                            126

Clustering(49) Variable = Del Peak 18(10p15.3) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           55                            160
  CLUS_2                           39                            174
  CLUS_3                           24                            105
D49V2, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           38                            195
  CLUS_2                           52                            147
  CLUS_3                           28                             97
D49V3, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           28                            131
  CLUS_2                           44                            120
  CLUS_3                           45                            187
D49V4, multiclass
D49V5, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           37                            126
  CLUS_2                           51                            158
  CLUS_3                           30                            157
D49V6, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           34                            133
  CLUS_2                           42                            129
  CLUS_3                           42                            178
D49V7, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           23                            101
  CLUS_2                           43                            161
  CLUS_3                           19                             51
D49V8, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           21                             77
  CLUS_2                           21                             44
  CLUS_3                           29                            112
  CLUS_4                           14                             80
D49V9, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           13                             85
  CLUS_2                           18                             52
  CLUS_3                           21                             70
D49V10, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           12                             91
  CLUS_2                           29                             77
  CLUS_3                           11                             39
D49V11, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                           18                             92
  CLUS_2                           35                            157
  CLUS_3                           35                            111
D49V12, multiclass
        clus
vv       DEL PEAK 18(10P15.3) MUTATED DEL PEAK 18(10P15.3) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           37                            116
  CLUS_3                           50                            242

Clustering(50) Variable = Del Peak 19(10q23.31) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            83                             132
  CLUS_2                            89                             124
  CLUS_3                            42                              87
D50V2, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            89                             144
  CLUS_2                            76                             123
  CLUS_3                            49                              76
D50V3, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            57                             102
  CLUS_2                            47                             117
  CLUS_3                           110                             122
D50V4, multiclass
D50V5, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            45                             118
  CLUS_2                            94                             115
  CLUS_3                            76                             111
D50V6, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            69                              98
  CLUS_2                            47                             124
  CLUS_3                            99                             121
D50V7, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            40                              84
  CLUS_2                            86                             118
  CLUS_3                            28                              42
D50V8, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            42                              56
  CLUS_2                            35                              30
  CLUS_3                            47                              94
  CLUS_4                            30                              64
D50V9, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            42                              56
  CLUS_2                            28                              42
  CLUS_3                            40                              51
D50V10, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            44                              59
  CLUS_2                            51                              55
  CLUS_3                            15                              35
D50V11, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                            37                              73
  CLUS_2                            90                             102
  CLUS_3                            53                              93
D50V12, multiclass
        clus
vv       DEL PEAK 19(10Q23.31) MUTATED DEL PEAK 19(10Q23.31) WILD-TYPE
  CLUS_1                             1                               2
  CLUS_2                            55                              98
  CLUS_3                           124                             168

Clustering(51) Variable = Del Peak 20(10q26.3) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           61                            154
  CLUS_2                           88                            125
  CLUS_3                           37                             92
D51V2, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           88                            145
  CLUS_2                           54                            145
  CLUS_3                           44                             81
D51V3, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           59                            100
  CLUS_2                           47                            117
  CLUS_3                           80                            152
D51V4, multiclass
D51V5, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           34                            129
  CLUS_2                           87                            122
  CLUS_3                           65                            122
D51V6, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           56                            111
  CLUS_2                           47                            124
  CLUS_3                           83                            137
D51V7, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           37                             87
  CLUS_2                           76                            128
  CLUS_3                           21                             49
D51V8, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           36                             62
  CLUS_2                           32                             33
  CLUS_3                           37                            104
  CLUS_4                           29                             65
D51V9, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           42                             56
  CLUS_2                           21                             49
  CLUS_3                           25                             66
D51V10, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           44                             59
  CLUS_2                           29                             77
  CLUS_3                           15                             35
D51V11, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                           30                             80
  CLUS_2                           82                            110
  CLUS_3                           42                            104
D51V12, multiclass
        clus
vv       DEL PEAK 20(10Q26.3) MUTATED DEL PEAK 20(10Q26.3) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           44                            109
  CLUS_3                          110                            182

Clustering(52) Variable = Del Peak 21(11p15.5) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                          121                             94
  CLUS_2                          141                             72
  CLUS_3                           71                             58
D52V2, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                          148                             85
  CLUS_2                          114                             85
  CLUS_3                           71                             54
D52V3, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           96                             63
  CLUS_2                          102                             62
  CLUS_3                          135                             97
D52V4, multiclass
D52V5, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           72                             91
  CLUS_2                          162                             47
  CLUS_3                          100                             87
D52V6, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           89                             78
  CLUS_2                           97                             74
  CLUS_3                          147                             73
D52V7, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           74                             50
  CLUS_2                          117                             87
  CLUS_3                           40                             30
D52V8, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           53                             45
  CLUS_2                           40                             25
  CLUS_3                           82                             59
  CLUS_4                           56                             38
D52V9, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           58                             40
  CLUS_2                           39                             31
  CLUS_3                           51                             40
D52V10, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           64                             39
  CLUS_2                           59                             47
  CLUS_3                           25                             25
D52V11, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                           59                             51
  CLUS_2                          124                             68
  CLUS_3                           79                             67
D52V12, multiclass
        clus
vv       DEL PEAK 21(11P15.5) MUTATED DEL PEAK 21(11P15.5) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           80                             73
  CLUS_3                          182                            110

Clustering(53) Variable = Del Peak 22(11q25) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         77                          138
  CLUS_2                         70                          143
  CLUS_3                         45                           84
D53V2, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         86                          147
  CLUS_2                         71                          128
  CLUS_3                         35                           90
D53V3, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         64                           95
  CLUS_2                         52                          112
  CLUS_3                         74                          158
D53V4, multiclass
D53V5, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         50                          113
  CLUS_2                         68                          141
  CLUS_3                         75                          112
D53V6, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         62                          105
  CLUS_2                         53                          118
  CLUS_3                         77                          143
D53V7, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         41                           83
  CLUS_2                         72                          132
  CLUS_3                         19                           51
D53V8, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         27                           71
  CLUS_2                         24                           41
  CLUS_3                         48                           93
  CLUS_4                         33                           61
D53V9, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         36                           62
  CLUS_2                         21                           49
  CLUS_3                         33                           58
D53V10, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         38                           65
  CLUS_2                         39                           67
  CLUS_3                         13                           37
D53V11, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                         40                           70
  CLUS_2                         68                          124
  CLUS_3                         47                           99
D53V12, multiclass
        clus
vv       DEL PEAK 22(11Q25) MUTATED DEL PEAK 22(11Q25) WILD-TYPE
  CLUS_1                          0                            3
  CLUS_2                         47                          106
  CLUS_3                        108                          184

Clustering(54) Variable = Del Peak 23(12q23.1) mutation analysis
D54V1, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           56                            159
  CLUS_2                           87                            126
  CLUS_3                           49                             80
D54V2, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           97                            136
  CLUS_2                           47                            152
  CLUS_3                           48                             77
D54V3, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           64                             95
  CLUS_2                           62                            102
  CLUS_3                           67                            165
D54V4, multiclass
D54V5, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           43                            120
  CLUS_2                          104                            105
  CLUS_3                           46                            141
D54V6, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           44                            123
  CLUS_2                           65                            106
  CLUS_3                           84                            136
D54V7, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           45                             79
  CLUS_2                           65                            139
  CLUS_3                           26                             44
D54V8, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           34                             64
  CLUS_2                           26                             39
  CLUS_3                           49                             92
  CLUS_4                           27                             67
D54V9, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           37                             61
  CLUS_2                           22                             48
  CLUS_3                           21                             70
D54V10, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           41                             62
  CLUS_2                           23                             83
  CLUS_3                           16                             34
D54V11, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                           37                             73
  CLUS_2                           74                            118
  CLUS_3                           41                            105
D54V12, multiclass
        clus
vv       DEL PEAK 23(12Q23.1) MUTATED DEL PEAK 23(12Q23.1) WILD-TYPE
  CLUS_1                            0                              3
  CLUS_2                           41                            112
  CLUS_3                          111                            181

Clustering(55) Variable = Del Peak 24(12q24.33) mutation analysis
D55V1, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            63                             152
  CLUS_2                            97                             116
  CLUS_3                            52                              77
D55V2, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                           101                             132
  CLUS_2                            49                             150
  CLUS_3                            62                              63
D55V3, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            67                              92
  CLUS_2                            66                              98
  CLUS_3                            79                             153
D55V4, multiclass
D55V5, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            47                             116
  CLUS_2                           119                              90
  CLUS_3                            47                             140
D55V6, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            51                             116
  CLUS_2                            71                             100
  CLUS_3                            91                             129
D55V7, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            48                              76
  CLUS_2                            72                             132
  CLUS_3                            32                              38
D55V8, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            36                              62
  CLUS_2                            32                              33
  CLUS_3                            53                              88
  CLUS_4                            31                              63
D55V9, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            40                              58
  CLUS_2                            25                              45
  CLUS_3                            26                              65
D55V10, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            45                              58
  CLUS_2                            27                              79
  CLUS_3                            19                              31
D55V11, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                            38                              72
  CLUS_2                            86                             106
  CLUS_3                            44                             102
D55V12, multiclass
        clus
vv       DEL PEAK 24(12Q24.33) MUTATED DEL PEAK 24(12Q24.33) WILD-TYPE
  CLUS_1                             0                               3
  CLUS_2                            46                             107
  CLUS_3                           122                             170

Clustering(56) Variable = Del Peak 25(13q14.2) mutation analysis
D56V1, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          133                             82
  CLUS_2                          145                             68
  CLUS_3                           69                             60
D56V2, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          140                             93
  CLUS_2                          130                             69
  CLUS_3                           77                             48
D56V3, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          103                             56
  CLUS_2                          103                             61
  CLUS_3                          141                             91
D56V4, multiclass
D56V5, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           79                             84
  CLUS_2                          156                             53
  CLUS_3                          113                             74
D56V6, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                          106                             61
  CLUS_2                           83                             88
  CLUS_3                          159                             61
D56V7, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           64                             60
  CLUS_2                          146                             58
  CLUS_3                           37                             33
D56V8, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           71                             27
  CLUS_2                           38                             27
  CLUS_3                           74                             67
  CLUS_4                           64                             30
D56V9, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           54                             44
  CLUS_2                           50                             20
  CLUS_3                           65                             26
D56V10, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           65                             38
  CLUS_2                           75                             31
  CLUS_3                           29                             21
D56V11, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                           61                             49
  CLUS_2                          124                             68
  CLUS_3                           95                             51
D56V12, multiclass
        clus
vv       DEL PEAK 25(13Q14.2) MUTATED DEL PEAK 25(13Q14.2) WILD-TYPE
  CLUS_1                            2                              1
  CLUS_2                           96                             57
  CLUS_3                          182                            110

Clustering(57) Variable = Del Peak 26(14q23.2) mutation analysis
D57V1, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                          110                            105
  CLUS_2                          122                             91
  CLUS_3                           59                             70
D57V2, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                          121                            112
  CLUS_2                          100                             99
  CLUS_3                           70                             55
D57V3, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           86                             73
  CLUS_2                           83                             81
  CLUS_3                          122                            110
D57V4, multiclass
D57V5, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           70                             93
  CLUS_2                          107                            102
  CLUS_3                          115                             72
D57V6, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           92                             75
  CLUS_2                           82                             89
  CLUS_3                          118                            102
D57V7, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           56                             68
  CLUS_2                          113                             91
  CLUS_3                           35                             35
D57V8, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           54                             44
  CLUS_2                           35                             30
  CLUS_3                           65                             76
  CLUS_4                           50                             44
D57V9, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           48                             50
  CLUS_2                           37                             33
  CLUS_3                           47                             44
D57V10, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           60                             43
  CLUS_2                           51                             55
  CLUS_3                           21                             29
D57V11, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                           55                             55
  CLUS_2                          107                             85
  CLUS_3                           73                             73
D57V12, multiclass
        clus
vv       DEL PEAK 26(14Q23.2) MUTATED DEL PEAK 26(14Q23.2) WILD-TYPE
  CLUS_1                            2                              1
  CLUS_2                           74                             79
  CLUS_3                          159                            133

Clustering(58) Variable = Del Peak 27(15q15.1) mutation analysis
D58V1, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                          148                             67
  CLUS_2                          122                             91
  CLUS_3                           79                             50
D58V2, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                          143                             90
  CLUS_2                          143                             56
  CLUS_3                           63                             62
D58V3, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                           94                             65
  CLUS_2                           92                             72
  CLUS_3                          162                             70
D58V4, multiclass
D58V5, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                           78                             85
  CLUS_2                          122                             87
  CLUS_3                          151                             36
D58V6, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                          127                             40
  CLUS_2                           94                             77
  CLUS_3                          130                             90
D58V7, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                           66                             58
  CLUS_2                          139                             65
  CLUS_3                           45                             25
D58V8, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                           60                             38
  CLUS_2                           46                             19
  CLUS_3                           80                             61
  CLUS_4                           64                             30
D58V9, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                           59                             39
  CLUS_2                           42                             28
  CLUS_3                           70                             21
D58V10, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                           67                             36
  CLUS_2                           77                             29
  CLUS_3                           27                             23
D58V11, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                           67                             43
  CLUS_2                          133                             59
  CLUS_3                           91                             55
D58V12, multiclass
        clus
vv       DEL PEAK 27(15Q15.1) MUTATED DEL PEAK 27(15Q15.1) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           97                             56
  CLUS_3                          193                             99

Clustering(59) Variable = Del Peak 28(16p13.3) mutation analysis
D59V1, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                          108                            107
  CLUS_2                          118                             95
  CLUS_3                           70                             59
D59V2, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                          133                            100
  CLUS_2                           93                            106
  CLUS_3                           70                             55
D59V3, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           89                             70
  CLUS_2                           77                             87
  CLUS_3                          129                            103
D59V4, multiclass
D59V5, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           78                             85
  CLUS_2                          108                            101
  CLUS_3                          111                             76
D59V6, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           91                             76
  CLUS_2                           94                             77
  CLUS_3                          112                            108
D59V7, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           69                             55
  CLUS_2                          107                             97
  CLUS_3                           34                             36
D59V8, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           53                             45
  CLUS_2                           38                             27
  CLUS_3                           80                             61
  CLUS_4                           39                             55
D59V9, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           54                             44
  CLUS_2                           35                             35
  CLUS_3                           50                             41
D59V10, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           59                             44
  CLUS_2                           55                             51
  CLUS_3                           25                             25
D59V11, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                           52                             58
  CLUS_2                          112                             80
  CLUS_3                           75                             71
D59V12, multiclass
        clus
vv       DEL PEAK 28(16P13.3) MUTATED DEL PEAK 28(16P13.3) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           79                             74
  CLUS_3                          159                            133

Clustering(60) Variable = Del Peak 29(16q22.1) mutation analysis
D60V1, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                          163                             52
  CLUS_2                          173                             40
  CLUS_3                          104                             25
D60V2, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                          191                             42
  CLUS_2                          154                             45
  CLUS_3                           95                             30
D60V3, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                          125                             34
  CLUS_2                          120                             44
  CLUS_3                          195                             37
D60V4, multiclass
D60V5, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                          110                             53
  CLUS_2                          170                             39
  CLUS_3                          161                             26
D60V6, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                          137                             30
  CLUS_2                          134                             37
  CLUS_3                          169                             51
D60V7, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                           92                             32
  CLUS_2                          162                             42
  CLUS_3                           56                             14
D60V8, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                           70                             28
  CLUS_2                           53                             12
  CLUS_3                          110                             31
  CLUS_4                           77                             17
D60V9, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                           81                             17
  CLUS_2                           53                             17
  CLUS_3                           73                             18
D60V10, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                           85                             18
  CLUS_2                           88                             18
  CLUS_3                           34                             16
D60V11, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                           90                             20
  CLUS_2                          158                             34
  CLUS_3                          113                             33
D60V12, multiclass
        clus
vv       DEL PEAK 29(16Q22.1) MUTATED DEL PEAK 29(16Q22.1) WILD-TYPE
  CLUS_1                            3                              0
  CLUS_2                          116                             37
  CLUS_3                          242                             50

Clustering(61) Variable = Del Peak 30(16q23.1) mutation analysis
D61V1, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                          159                             56
  CLUS_2                          165                             48
  CLUS_3                          108                             21
D61V2, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                          189                             44
  CLUS_2                          154                             45
  CLUS_3                           89                             36
D61V3, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                          128                             31
  CLUS_2                          119                             45
  CLUS_3                          186                             46
D61V4, multiclass
D61V5, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                          107                             56
  CLUS_2                          167                             42
  CLUS_3                          160                             27
D61V6, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                          135                             32
  CLUS_2                          131                             40
  CLUS_3                          167                             53
D61V7, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           90                             34
  CLUS_2                          159                             45
  CLUS_3                           56                             14
D61V8, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           70                             28
  CLUS_2                           48                             17
  CLUS_3                          113                             28
  CLUS_4                           74                             20
D61V9, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           79                             19
  CLUS_2                           52                             18
  CLUS_3                           73                             18
D61V10, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           82                             21
  CLUS_2                           87                             19
  CLUS_3                           35                             15
D61V11, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                           93                             17
  CLUS_2                          155                             37
  CLUS_3                          108                             38
D61V12, multiclass
        clus
vv       DEL PEAK 30(16Q23.1) MUTATED DEL PEAK 30(16Q23.1) WILD-TYPE
  CLUS_1                            3                              0
  CLUS_2                          111                             42
  CLUS_3                          242                             50

Clustering(62) Variable = Del Peak 31(17p12) mutation analysis
D62V1, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        175                           40
  CLUS_2                        184                           29
  CLUS_3                        111                           18
D62V2, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        197                           36
  CLUS_2                        165                           34
  CLUS_3                        108                           17
D62V3, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        138                           21
  CLUS_2                        136                           28
  CLUS_3                        196                           36
D62V4, multiclass
D62V5, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        136                           27
  CLUS_2                        180                           29
  CLUS_3                        156                           31
D62V6, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        135                           32
  CLUS_2                        147                           24
  CLUS_3                        189                           31
D62V7, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                        103                           21
  CLUS_2                        168                           36
  CLUS_3                         59                           11
D62V8, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         83                           15
  CLUS_2                         58                            7
  CLUS_3                        112                           29
  CLUS_4                         77                           17
D62V9, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         87                           11
  CLUS_2                         62                            8
  CLUS_3                         73                           18
D62V10, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         91                           12
  CLUS_2                         88                           18
  CLUS_3                         43                            7
D62V11, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                         94                           16
  CLUS_2                        170                           22
  CLUS_3                        123                           23
D62V12, multiclass
        clus
vv       DEL PEAK 31(17P12) MUTATED DEL PEAK 31(17P12) WILD-TYPE
  CLUS_1                          2                            1
  CLUS_2                        129                           24
  CLUS_3                        256                           36

Clustering(63) Variable = Del Peak 32(17q11.2) mutation analysis
D63V1, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                          174                             41
  CLUS_2                          175                             38
  CLUS_3                          106                             23
D63V2, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                          197                             36
  CLUS_2                          152                             47
  CLUS_3                          106                             19
D63V3, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                          127                             32
  CLUS_2                          136                             28
  CLUS_3                          192                             40
D63V4, multiclass
D63V5, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                          127                             36
  CLUS_2                          188                             21
  CLUS_3                          141                             46
D63V6, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                          121                             46
  CLUS_2                          141                             30
  CLUS_3                          193                             27
D63V7, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                          101                             23
  CLUS_2                          167                             37
  CLUS_3                           54                             16
D63V8, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                           85                             13
  CLUS_2                           56                              9
  CLUS_3                          111                             30
  CLUS_4                           70                             24
D63V9, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                           83                             15
  CLUS_2                           56                             14
  CLUS_3                           74                             17
D63V10, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                           89                             14
  CLUS_2                           83                             23
  CLUS_3                           41                              9
D63V11, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                           87                             23
  CLUS_2                          169                             23
  CLUS_3                          119                             27
D63V12, multiclass
        clus
vv       DEL PEAK 32(17Q11.2) MUTATED DEL PEAK 32(17Q11.2) WILD-TYPE
  CLUS_1                            2                              1
  CLUS_2                          125                             28
  CLUS_3                          248                             44

Clustering(64) Variable = Del Peak 33(18q23) mutation analysis
D64V1, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        144                           71
  CLUS_2                        134                           79
  CLUS_3                         84                           45
D64V2, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        148                           85
  CLUS_2                        132                           67
  CLUS_3                         82                           43
D64V3, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        109                           50
  CLUS_2                        104                           60
  CLUS_3                        149                           83
D64V4, multiclass
D64V5, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         97                           66
  CLUS_2                        155                           54
  CLUS_3                        112                           75
D64V6, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                        108                           59
  CLUS_2                        116                           55
  CLUS_3                        140                           80
D64V7, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         73                           51
  CLUS_2                        134                           70
  CLUS_3                         45                           25
D64V8, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         63                           35
  CLUS_2                         39                           26
  CLUS_3                         87                           54
  CLUS_4                         63                           31
D64V9, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         59                           39
  CLUS_2                         42                           28
  CLUS_3                         66                           25
D64V10, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         63                           40
  CLUS_2                         76                           30
  CLUS_3                         28                           22
D64V11, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                         71                           39
  CLUS_2                        131                           61
  CLUS_3                         93                           53
D64V12, multiclass
        clus
vv       DEL PEAK 33(18Q23) MUTATED DEL PEAK 33(18Q23) WILD-TYPE
  CLUS_1                          3                            0
  CLUS_2                         96                           57
  CLUS_3                        196                           96

Clustering(65) Variable = Del Peak 34(19p13.3) mutation analysis
D65V1, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          195                             20
  CLUS_2                          182                             31
  CLUS_3                          114                             15
D65V2, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          199                             34
  CLUS_2                          187                             12
  CLUS_3                          105                             20
D65V3, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          140                             19
  CLUS_2                          144                             20
  CLUS_3                          206                             26
D65V4, multiclass
D65V5, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          137                             26
  CLUS_2                          180                             29
  CLUS_3                          175                             12
D65V6, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          156                             11
  CLUS_2                          149                             22
  CLUS_3                          186                             34
D65V7, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                          107                             17
  CLUS_2                          182                             22
  CLUS_3                           60                             10
D65V8, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           86                             12
  CLUS_2                           56                              9
  CLUS_3                          119                             22
  CLUS_4                           88                              6
D65V9, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           84                             14
  CLUS_2                           61                              9
  CLUS_3                           84                              7
D65V10, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           90                             13
  CLUS_2                          101                              5
  CLUS_3                           38                             12
D65V11, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                           96                             14
  CLUS_2                          172                             20
  CLUS_3                          135                             11
D65V12, multiclass
        clus
vv       DEL PEAK 34(19P13.3) MUTATED DEL PEAK 34(19P13.3) WILD-TYPE
  CLUS_1                            2                              1
  CLUS_2                          139                             14
  CLUS_3                          262                             30

Clustering(66) Variable = Del Peak 35(19q13.33) mutation analysis
D66V1, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                           127                              88
  CLUS_2                           114                              99
  CLUS_3                            49                              80
D66V2, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                           104                             129
  CLUS_2                           117                              82
  CLUS_3                            69                              56
D66V3, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                            79                              80
  CLUS_2                            76                              88
  CLUS_3                           134                              98
D66V4, multiclass
D66V5, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                            84                              79
  CLUS_2                            96                             113
  CLUS_3                           110                              77
D66V6, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                           100                              67
  CLUS_2                            70                             101
  CLUS_3                           119                             101
D66V7, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                            52                              72
  CLUS_2                           105                              99
  CLUS_3                            38                              32
D66V8, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                            53                              45
  CLUS_2                            36                              29
  CLUS_3                            56                              85
  CLUS_4                            50                              44
D66V9, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                            37                              61
  CLUS_2                            33                              37
  CLUS_3                            56                              35
D66V10, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                            43                              60
  CLUS_2                            62                              44
  CLUS_3                            21                              29
D66V11, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                            52                              58
  CLUS_2                            97                              95
  CLUS_3                            81                              65
D66V12, multiclass
        clus
vv       DEL PEAK 35(19Q13.33) MUTATED DEL PEAK 35(19Q13.33) WILD-TYPE
  CLUS_1                             2                               1
  CLUS_2                            84                              69
  CLUS_3                           144                             148

Clustering(67) Variable = Del Peak 36(19q13.43) mutation analysis
D67V1, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                           122                              93
  CLUS_2                           101                             112
  CLUS_3                            54                              75
D67V2, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                           105                             128
  CLUS_2                           112                              87
  CLUS_3                            60                              65
D67V3, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                            71                              88
  CLUS_2                            76                              88
  CLUS_3                           129                             103
D67V4, multiclass
D67V5, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                            80                              83
  CLUS_2                            84                             125
  CLUS_3                           113                              74
D67V6, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                           101                              66
  CLUS_2                            64                             107
  CLUS_3                           112                             108
D67V7, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                            49                              75
  CLUS_2                           101                             103
  CLUS_3                            35                              35
D67V8, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                            47                              51
  CLUS_2                            33                              32
  CLUS_3                            57                              84
  CLUS_4                            48                              46
D67V9, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                            43                              55
  CLUS_2                            31                              39
  CLUS_3                            47                              44
D67V10, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                            48                              55
  CLUS_2                            55                              51
  CLUS_3                            18                              32
D67V11, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                            54                              56
  CLUS_2                            86                             106
  CLUS_3                            75                              71
D67V12, multiclass
        clus
vv       DEL PEAK 36(19Q13.43) MUTATED DEL PEAK 36(19Q13.43) WILD-TYPE
  CLUS_1                             3                               0
  CLUS_2                            76                              77
  CLUS_3                           136                             156

Clustering(68) Variable = Del Peak 37(21q22.3) mutation analysis
D68V1, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           93                            122
  CLUS_2                           75                            138
  CLUS_3                           50                             79
D68V2, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           83                            150
  CLUS_2                           83                            116
  CLUS_3                           52                             73
D68V3, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           58                            101
  CLUS_2                           66                             98
  CLUS_3                           94                            138
D68V4, multiclass
D68V5, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           62                            101
  CLUS_2                           80                            129
  CLUS_3                           76                            111
D68V6, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           73                             94
  CLUS_2                           62                            109
  CLUS_3                           82                            138
D68V7, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           48                             76
  CLUS_2                           73                            131
  CLUS_3                           26                             44
D68V8, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           35                             63
  CLUS_2                           22                             43
  CLUS_3                           55                             86
  CLUS_4                           35                             59
D68V9, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           41                             57
  CLUS_2                           19                             51
  CLUS_3                           34                             57
D68V10, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           41                             62
  CLUS_2                           40                             66
  CLUS_3                           13                             37
D68V11, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                           38                             72
  CLUS_2                           80                            112
  CLUS_3                           55                             91
D68V12, multiclass
        clus
vv       DEL PEAK 37(21Q22.3) MUTATED DEL PEAK 37(21Q22.3) WILD-TYPE
  CLUS_1                            1                              2
  CLUS_2                           57                             96
  CLUS_3                          115                            177

Clustering(69) Variable = Del Peak 38(22q13.32) mutation analysis
D69V1, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           193                              22
  CLUS_2                           183                              30
  CLUS_3                           106                              23
D69V2, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           197                              36
  CLUS_2                           181                              18
  CLUS_3                           104                              21
D69V3, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           136                              23
  CLUS_2                           134                              30
  CLUS_3                           211                              21
D69V4, multiclass
D69V5, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           132                              31
  CLUS_2                           184                              25
  CLUS_3                           167                              20
D69V6, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           152                              15
  CLUS_2                           145                              26
  CLUS_3                           185                              35
D69V7, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                           109                              15
  CLUS_2                           181                              23
  CLUS_3                            53                              17
D69V8, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            89                               9
  CLUS_2                            55                              10
  CLUS_3                           117                              24
  CLUS_4                            82                              12
D69V9, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            80                              18
  CLUS_2                            61                               9
  CLUS_3                            84                               7
D69V10, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            85                              18
  CLUS_2                            99                               7
  CLUS_3                            41                               9
D69V11, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                            87                              23
  CLUS_2                           171                              21
  CLUS_3                           131                              15
D69V12, multiclass
        clus
vv       DEL PEAK 38(22Q13.32) MUTATED DEL PEAK 38(22Q13.32) WILD-TYPE
  CLUS_1                             3                               0
  CLUS_2                           137                              16
  CLUS_3                           249                              43

Clustering(70) Variable = Del Peak 39(Xp21.1) mutation analysis
D70V1, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                         135                            80
  CLUS_2                         143                            70
  CLUS_3                          76                            53
D70V2, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                         147                            86
  CLUS_2                         127                            72
  CLUS_3                          80                            45
D70V3, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          91                            68
  CLUS_2                         107                            57
  CLUS_3                         156                            76
D70V4, multiclass
D70V5, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          95                            68
  CLUS_2                         146                            63
  CLUS_3                         115                            72
D70V6, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          95                            72
  CLUS_2                         105                            66
  CLUS_3                         156                            64
D70V7, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          73                            51
  CLUS_2                         141                            63
  CLUS_3                          42                            28
D70V8, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          73                            25
  CLUS_2                          45                            20
  CLUS_3                          81                            60
  CLUS_4                          57                            37
D70V9, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          65                            33
  CLUS_2                          41                            29
  CLUS_3                          56                            35
D70V10, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          67                            36
  CLUS_2                          65                            41
  CLUS_3                          30                            20
D70V11, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                          71                            39
  CLUS_2                         127                            65
  CLUS_3                          94                            52
D70V12, multiclass
        clus
vv       DEL PEAK 39(XP21.1) MUTATED DEL PEAK 39(XP21.1) WILD-TYPE
  CLUS_1                           1                             2
  CLUS_2                          95                            58
  CLUS_3                         196                            96
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"              "MIR_CNMF" 
                     V4                      V5                      V6 
    "MIR_CHIERARCHICAL"               "CN_CNMF"      "METHLYATION_CNMF" 
                     V7                      V8                      V9 
            "RPPA_CNMF"    "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" 
                    V10                     V11                     V12 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
