Association of mutation, copy number alteration, and subtype markers with pathways
Colon/Rectal Adenocarcinoma (Primary solid tumor)
22 February 2013
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analyses__2013_02_22
Maintainer Information
Citation Information
Maintained by Spring Yingchun Liu
(Broad Institute)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2013):
Association of mutation, copy number alteration, and subtype markers with pathways.
Broad Institute of MIT and Harvard.
doi:10.7908/C1FJ2F0R
Overview
Introduction
Summary
There are 120 genes with significant mutation (Q value <= 0.1) and 555 genes with significant copy number alteration (Q value <= 0.25). The identified marker genes (Q value <= 0.01 or within top 2000) are 2000 for subtype 1, 2000 for subtype 2, 2000 for subtype 3. Pathways significantly enriched with these genes (Q value <= 0.01) are identified :
0 pathways significantly enriched with genes with copy number alteration or mutation.
0 pathways significantly enriched with marker genes of gene expression subtype 1
0 pathways significantly enriched with marker genes of gene expression subtype 2
0 pathways significantly enriched with marker genes of gene expression subtype 3
Results
The top five pathways enriched with genes with copy number alteration or mutation
The top five pathways enriched with marker genes of gene expression subtype 1
The top five pathways enriched with marker genes of gene expression subtype 2
The top five pathways enriched with marker genes of gene expression subtype 3
Methods & Data
Copyright © 2013
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.