This pipeline computes the correlation between significant copy number variation (cnv) genes and molecular subtypes.
Testing the association between copy number variation of 72 peak regions and 6 molecular subtypes across 237 patients, 108 significant findings detected with Q value < 0.25.
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Amp Peak 1(1p36.22) cnvs correlated to 'CN_CNMF'.
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Amp Peak 2(1q21.3) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Amp Peak 3(1q42.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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Amp Peak 4(3q26.31) cnvs correlated to 'CN_CNMF'.
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Amp Peak 5(5p13.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 6(6p21.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Amp Peak 7(6q12) cnvs correlated to 'CN_CNMF'.
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Amp Peak 8(7p11.2) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Amp Peak 9(7q21.2) cnvs correlated to 'CN_CNMF'.
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Amp Peak 10(8p23.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 11(8q24.21) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Amp Peak 13(9q34.3) cnvs correlated to 'CN_CNMF'.
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Amp Peak 14(10q26.13) cnvs correlated to 'CN_CNMF'.
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Amp Peak 15(11p13) cnvs correlated to 'CN_CNMF'.
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Amp Peak 16(11q13.3) cnvs correlated to 'CN_CNMF'.
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Amp Peak 17(12p12.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 18(12q15) cnvs correlated to 'CN_CNMF'.
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Amp Peak 19(13q12.3) cnvs correlated to 'CN_CNMF'.
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Amp Peak 20(13q22.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 21(15q26.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Amp Peak 22(17q12) cnvs correlated to 'CN_CNMF'.
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Amp Peak 23(18q11.2) cnvs correlated to 'CN_CNMF'.
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Amp Peak 24(19q12) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Amp Peak 25(20q13.2) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Amp Peak 26(Xq27.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 1(1p36.11) cnvs correlated to 'CN_CNMF'.
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Del Peak 2(1p31.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 6(2q37.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 7(3p26.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 8(3p14.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 9(3q26.31) cnvs correlated to 'CN_CNMF'.
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Del Peak 10(4p16.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 11(4q22.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 12(4q35.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 13(5q11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 14(6p25.3) cnvs correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 15(6q26) cnvs correlated to 'CN_CNMF'.
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Del Peak 16(6q27) cnvs correlated to 'CN_CNMF'.
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Del Peak 17(7q31.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 18(7q36.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 19(8p23.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 20(9p23) cnvs correlated to 'CN_CNMF'.
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Del Peak 21(9p21.3) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 22(9q21.11) cnvs correlated to 'CN_CNMF'.
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Del Peak 23(10p14) cnvs correlated to 'CN_CNMF'.
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Del Peak 24(10q22.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 25(10q23.31) cnvs correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 26(11p15.5) cnvs correlated to 'CN_CNMF'.
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Del Peak 27(11q23.2) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 28(12p13.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 29(14q21.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 30(14q32.33) cnvs correlated to 'CN_CNMF'.
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Del Peak 31(15q11.2) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 32(15q15.1) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 33(16p13.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 34(16q23.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 35(17p12) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 36(17q24.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 37(18q21.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 38(18q22.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 39(19p13.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 40(19q13.11) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 41(20p12.1) cnvs correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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Del Peak 42(21q11.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 43(22q13.31) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Del Peak 44(Xp22.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 45(Xp21.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 46(Xq21.33) cnvs correlated to 'CN_CNMF'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 72 regions and 6 molecular subtypes. Shown in the table are P values (Q values). Thresholded by Q value < 0.25, 108 significant findings detected.
Molecular subtypes |
CN CNMF |
METHLYATION CNMF |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
Del Peak 13(5q11 2) | 70 (30%) | 167 |
4.27e-19 (1.82e-16) |
4.64e-09 (1.83e-06) |
0.0452 (1.00) |
0.15 (1.00) |
2.27e-05 (0.00804) |
4.05e-06 (0.0015) |
Del Peak 39(19p13 3) | 71 (30%) | 166 |
2.46e-25 (1.06e-22) |
7.57e-09 (2.96e-06) |
0.347 (1.00) |
0.361 (1.00) |
8.93e-05 (0.0306) |
1.55e-09 (6.12e-07) |
Amp Peak 3(1q42 3) | 73 (31%) | 164 |
6.71e-13 (2.78e-10) |
0.000639 (0.208) |
0.755 (1.00) |
0.361 (1.00) |
9.69e-05 (0.033) |
0.00587 (1.00) |
Amp Peak 24(19q12) | 61 (26%) | 176 |
6.26e-10 (2.5e-07) |
0.000449 (0.147) |
0.51 (1.00) |
0.0604 (1.00) |
0.0138 (1.00) |
1.13e-05 (0.00409) |
Del Peak 10(4p16 3) | 76 (32%) | 161 |
4.98e-12 (2.04e-09) |
2.73e-05 (0.00964) |
0.347 (1.00) |
0.361 (1.00) |
0.00105 (0.337) |
1.5e-06 (0.000567) |
Del Peak 11(4q22 1) | 91 (38%) | 146 |
2.01e-20 (8.61e-18) |
1.38e-05 (0.00497) |
0.223 (1.00) |
0.543 (1.00) |
0.00334 (1.00) |
0.000205 (0.0682) |
Del Peak 12(4q35 1) | 87 (37%) | 150 |
8.78e-18 (3.74e-15) |
6.78e-05 (0.0235) |
0.0666 (1.00) |
0.498 (1.00) |
0.0158 (1.00) |
0.000188 (0.063) |
Del Peak 19(8p23 2) | 56 (24%) | 181 |
8.79e-14 (3.65e-11) |
6.65e-05 (0.0231) |
0.51 (1.00) |
0.899 (1.00) |
0.0474 (1.00) |
0.000177 (0.0595) |
Del Peak 25(10q23 31) | 54 (23%) | 183 |
2.17e-14 (9.01e-12) |
0.00133 (0.42) |
0.00684 (1.00) |
0.0899 (1.00) |
8.96e-05 (0.0307) |
4.69e-05 (0.0165) |
Del Peak 31(15q11 2) | 56 (24%) | 181 |
1.01e-11 (4.14e-09) |
0.000138 (0.0465) |
0.00934 (1.00) |
0.011 (1.00) |
0.01 (1.00) |
0.000107 (0.0362) |
Del Peak 32(15q15 1) | 57 (24%) | 180 |
2.63e-10 (1.06e-07) |
0.000661 (0.215) |
0.0452 (1.00) |
0.0899 (1.00) |
0.0354 (1.00) |
5.96e-05 (0.0207) |
Del Peak 35(17p12) | 79 (33%) | 158 |
6.8e-23 (2.92e-20) |
2.51e-06 (0.000936) |
0.203 (1.00) |
0.509 (1.00) |
0.00142 (0.447) |
2.01e-05 (0.00713) |
Del Peak 40(19q13 11) | 30 (13%) | 207 |
8.54e-10 (3.39e-07) |
4.99e-05 (0.0175) |
0.0946 (1.00) |
0.23 (1.00) |
0.00354 (1.00) |
5.22e-05 (0.0183) |
Del Peak 43(22q13 31) | 70 (30%) | 167 |
7.53e-15 (3.15e-12) |
1.14e-08 (4.46e-06) |
1 (1.00) |
1 (1.00) |
0.00304 (0.926) |
0.00021 (0.0696) |
Amp Peak 2(1q21 3) | 75 (32%) | 162 |
1.25e-14 (5.22e-12) |
7.53e-06 (0.00276) |
0.215 (1.00) |
0.0203 (1.00) |
0.0008 (0.257) |
0.00164 (0.514) |
Amp Peak 6(6p21 1) | 60 (25%) | 177 |
6.73e-13 (2.78e-10) |
7.52e-05 (0.0259) |
0.332 (1.00) |
0.678 (1.00) |
0.042 (1.00) |
0.0069 (1.00) |
Amp Peak 8(7p11 2) | 96 (41%) | 141 |
3.26e-11 (1.32e-08) |
0.000524 (0.171) |
0.547 (1.00) |
0.651 (1.00) |
0.00437 (1.00) |
0.0208 (1.00) |
Amp Peak 11(8q24 21) | 139 (59%) | 98 |
6.39e-16 (2.69e-13) |
0.000696 (0.226) |
0.281 (1.00) |
0.464 (1.00) |
0.0838 (1.00) |
0.0202 (1.00) |
Amp Peak 21(15q26 1) | 52 (22%) | 185 |
1.96e-14 (8.16e-12) |
0.000118 (0.0398) |
1 (1.00) |
0.885 (1.00) |
0.0241 (1.00) |
0.0132 (1.00) |
Amp Peak 25(20q13 2) | 147 (62%) | 90 |
9.23e-20 (3.95e-17) |
8.73e-06 (0.00318) |
0.755 (1.00) |
0.116 (1.00) |
0.0315 (1.00) |
0.0239 (1.00) |
Del Peak 14(6p25 3) | 48 (20%) | 189 |
2.05e-07 (7.82e-05) |
0.0524 (1.00) |
0.698 (1.00) |
0.424 (1.00) |
0.28 (1.00) |
0.000293 (0.0967) |
Del Peak 21(9p21 3) | 88 (37%) | 149 |
3.46e-16 (1.47e-13) |
1.63e-08 (6.33e-06) |
0.215 (1.00) |
0.839 (1.00) |
0.00662 (1.00) |
0.00243 (0.751) |
Del Peak 27(11q23 2) | 43 (18%) | 194 |
0.000245 (0.081) |
0.000202 (0.0675) |
1 (1.00) |
0.215 (1.00) |
0.0607 (1.00) |
0.221 (1.00) |
Del Peak 41(20p12 1) | 33 (14%) | 204 |
9.18e-06 (0.00333) |
0.000113 (0.0381) |
1 (1.00) |
0.84 (1.00) |
0.0244 (1.00) |
0.016 (1.00) |
Amp Peak 1(1p36 22) | 24 (10%) | 213 |
7.55e-06 (0.00276) |
0.069 (1.00) |
0.412 (1.00) |
0.557 (1.00) |
0.0421 (1.00) |
0.181 (1.00) |
Amp Peak 4(3q26 31) | 67 (28%) | 170 |
1.45e-05 (0.00518) |
0.0307 (1.00) |
0.116 (1.00) |
0.142 (1.00) |
0.159 (1.00) |
0.49 (1.00) |
Amp Peak 5(5p13 1) | 58 (24%) | 179 |
1.17e-12 (4.84e-10) |
0.02 (1.00) |
1 (1.00) |
0.561 (1.00) |
0.0316 (1.00) |
0.00525 (1.00) |
Amp Peak 7(6q12) | 42 (18%) | 195 |
7.48e-08 (2.87e-05) |
0.0439 (1.00) |
0.51 (1.00) |
0.899 (1.00) |
0.0669 (1.00) |
0.0179 (1.00) |
Amp Peak 9(7q21 2) | 97 (41%) | 140 |
3.67e-10 (1.47e-07) |
0.0134 (1.00) |
0.547 (1.00) |
0.433 (1.00) |
0.0229 (1.00) |
0.0729 (1.00) |
Amp Peak 10(8p23 1) | 79 (33%) | 158 |
2.27e-16 (9.64e-14) |
0.96 (1.00) |
0.364 (1.00) |
0.165 (1.00) |
0.558 (1.00) |
0.623 (1.00) |
Amp Peak 13(9q34 3) | 48 (20%) | 189 |
4.1e-06 (0.00151) |
0.241 (1.00) |
0.747 (1.00) |
1 (1.00) |
0.394 (1.00) |
0.313 (1.00) |
Amp Peak 14(10q26 13) | 45 (19%) | 192 |
5.82e-05 (0.0203) |
0.0116 (1.00) |
1 (1.00) |
1 (1.00) |
0.447 (1.00) |
0.27 (1.00) |
Amp Peak 15(11p13) | 38 (16%) | 199 |
0.000315 (0.104) |
0.062 (1.00) |
0.698 (1.00) |
0.293 (1.00) |
0.293 (1.00) |
0.07 (1.00) |
Amp Peak 16(11q13 3) | 47 (20%) | 190 |
1.35e-06 (0.000509) |
0.0537 (1.00) |
1 (1.00) |
0.264 (1.00) |
0.0107 (1.00) |
0.05 (1.00) |
Amp Peak 17(12p12 1) | 54 (23%) | 183 |
4.47e-06 (0.00164) |
0.0238 (1.00) |
0.412 (1.00) |
0.557 (1.00) |
0.16 (1.00) |
0.799 (1.00) |
Amp Peak 18(12q15) | 49 (21%) | 188 |
6.91e-05 (0.0238) |
0.00219 (0.679) |
0.721 (1.00) |
1 (1.00) |
0.475 (1.00) |
0.804 (1.00) |
Amp Peak 19(13q12 3) | 81 (34%) | 156 |
5.94e-09 (2.33e-06) |
0.00257 (0.79) |
0.223 (1.00) |
0.115 (1.00) |
0.408 (1.00) |
0.151 (1.00) |
Amp Peak 20(13q22 1) | 88 (37%) | 149 |
2e-08 (7.76e-06) |
0.00482 (1.00) |
0.131 (1.00) |
0.652 (1.00) |
0.323 (1.00) |
0.000777 (0.251) |
Amp Peak 22(17q12) | 61 (26%) | 176 |
7.74e-12 (3.17e-09) |
0.0395 (1.00) |
0.736 (1.00) |
0.162 (1.00) |
0.0088 (1.00) |
0.00362 (1.00) |
Amp Peak 23(18q11 2) | 61 (26%) | 176 |
8.77e-07 (0.000332) |
0.00963 (1.00) |
1 (1.00) |
0.616 (1.00) |
0.338 (1.00) |
0.164 (1.00) |
Amp Peak 26(Xq27 3) | 43 (18%) | 194 |
1.82e-06 (0.000685) |
0.181 (1.00) |
0.457 (1.00) |
0.674 (1.00) |
0.0396 (1.00) |
0.617 (1.00) |
Del Peak 1(1p36 11) | 63 (27%) | 174 |
2.71e-12 (1.11e-09) |
0.00528 (1.00) |
0.358 (1.00) |
0.538 (1.00) |
0.0698 (1.00) |
0.0118 (1.00) |
Del Peak 2(1p31 1) | 37 (16%) | 200 |
7.78e-10 (3.1e-07) |
0.191 (1.00) |
0.698 (1.00) |
0.641 (1.00) |
0.241 (1.00) |
0.0311 (1.00) |
Del Peak 6(2q37 2) | 33 (14%) | 204 |
1.59e-05 (0.00567) |
0.0491 (1.00) |
0.607 (1.00) |
0.643 (1.00) |
0.114 (1.00) |
0.00889 (1.00) |
Del Peak 7(3p26 1) | 56 (24%) | 181 |
2.49e-10 (1e-07) |
0.00125 (0.398) |
0.31 (1.00) |
0.21 (1.00) |
0.0386 (1.00) |
0.00272 (0.829) |
Del Peak 8(3p14 2) | 71 (30%) | 166 |
1.9e-11 (7.75e-09) |
0.00468 (1.00) |
0.488 (1.00) |
0.138 (1.00) |
0.205 (1.00) |
0.0138 (1.00) |
Del Peak 9(3q26 31) | 20 (8%) | 217 |
1.42e-05 (0.00509) |
0.0135 (1.00) |
0.345 (1.00) |
0.356 (1.00) |
0.0599 (1.00) |
0.00659 (1.00) |
Del Peak 15(6q26) | 47 (20%) | 190 |
9.44e-06 (0.00342) |
0.0154 (1.00) |
0.457 (1.00) |
0.603 (1.00) |
0.223 (1.00) |
0.161 (1.00) |
Del Peak 16(6q27) | 47 (20%) | 190 |
2.44e-06 (0.000912) |
0.0124 (1.00) |
0.24 (1.00) |
0.293 (1.00) |
0.532 (1.00) |
0.0393 (1.00) |
Del Peak 17(7q31 1) | 26 (11%) | 211 |
4.84e-06 (0.00178) |
0.0163 (1.00) |
0.412 (1.00) |
0.557 (1.00) |
0.0305 (1.00) |
0.0839 (1.00) |
Del Peak 18(7q36 3) | 42 (18%) | 195 |
2.54e-10 (1.02e-07) |
0.0013 (0.411) |
0.698 (1.00) |
0.499 (1.00) |
0.179 (1.00) |
0.0017 (0.529) |
Del Peak 20(9p23) | 90 (38%) | 147 |
5.78e-16 (2.44e-13) |
0.0027 (0.825) |
0.124 (1.00) |
0.449 (1.00) |
0.0331 (1.00) |
0.0262 (1.00) |
Del Peak 22(9q21 11) | 52 (22%) | 185 |
2.65e-08 (1.02e-05) |
0.00879 (1.00) |
0.698 (1.00) |
0.641 (1.00) |
0.0817 (1.00) |
0.00248 (0.764) |
Del Peak 23(10p14) | 34 (14%) | 203 |
3.4e-07 (0.000129) |
0.00199 (0.618) |
0.721 (1.00) |
0.885 (1.00) |
0.0167 (1.00) |
0.0459 (1.00) |
Del Peak 24(10q22 3) | 34 (14%) | 203 |
2.26e-08 (8.73e-06) |
0.0165 (1.00) |
0.132 (1.00) |
0.15 (1.00) |
0.0194 (1.00) |
0.00156 (0.49) |
Del Peak 26(11p15 5) | 46 (19%) | 191 |
2.23e-09 (8.79e-07) |
0.004 (1.00) |
1 (1.00) |
1 (1.00) |
0.18 (1.00) |
0.00482 (1.00) |
Del Peak 28(12p13 2) | 34 (14%) | 203 |
5.3e-09 (2.08e-06) |
0.0137 (1.00) |
1 (1.00) |
1 (1.00) |
0.0337 (1.00) |
0.222 (1.00) |
Del Peak 29(14q21 1) | 52 (22%) | 185 |
3.95e-06 (0.00146) |
0.118 (1.00) |
0.132 (1.00) |
0.674 (1.00) |
0.0343 (1.00) |
0.0177 (1.00) |
Del Peak 30(14q32 33) | 59 (25%) | 178 |
1.88e-06 (0.000705) |
0.219 (1.00) |
0.0883 (1.00) |
0.458 (1.00) |
0.251 (1.00) |
0.174 (1.00) |
Del Peak 33(16p13 3) | 34 (14%) | 203 |
3.76e-06 (0.0014) |
0.252 (1.00) |
0.664 (1.00) |
0.73 (1.00) |
0.00711 (1.00) |
0.127 (1.00) |
Del Peak 34(16q23 1) | 74 (31%) | 163 |
1.79e-05 (0.00638) |
0.688 (1.00) |
0.543 (1.00) |
0.915 (1.00) |
0.665 (1.00) |
0.182 (1.00) |
Del Peak 36(17q24 3) | 36 (15%) | 201 |
2.57e-08 (9.93e-06) |
0.227 (1.00) |
0.0883 (1.00) |
0.0551 (1.00) |
0.0145 (1.00) |
0.00115 (0.368) |
Del Peak 37(18q21 2) | 95 (40%) | 142 |
5.1e-16 (2.16e-13) |
0.0144 (1.00) |
0.763 (1.00) |
0.191 (1.00) |
0.112 (1.00) |
0.0142 (1.00) |
Del Peak 38(18q22 3) | 92 (39%) | 145 |
8.51e-16 (3.57e-13) |
0.0133 (1.00) |
1 (1.00) |
0.917 (1.00) |
0.087 (1.00) |
0.0363 (1.00) |
Del Peak 42(21q11 2) | 73 (31%) | 164 |
2.9e-11 (1.18e-08) |
0.00347 (1.00) |
0.332 (1.00) |
0.678 (1.00) |
0.0115 (1.00) |
0.275 (1.00) |
Del Peak 44(Xp22 2) | 38 (16%) | 199 |
3.96e-08 (1.52e-05) |
0.0148 (1.00) |
0.698 (1.00) |
0.732 (1.00) |
0.131 (1.00) |
0.00839 (1.00) |
Del Peak 45(Xp21 1) | 33 (14%) | 204 |
1.09e-10 (4.42e-08) |
0.0854 (1.00) |
0.281 (1.00) |
0.283 (1.00) |
0.0208 (1.00) |
0.0762 (1.00) |
Del Peak 46(Xq21 33) | 30 (13%) | 207 |
3.68e-07 (0.00014) |
0.0663 (1.00) |
0.457 (1.00) |
0.674 (1.00) |
0.0496 (1.00) |
0.0108 (1.00) |
Amp Peak 12(9p24 1) | 30 (13%) | 207 |
0.793 (1.00) |
0.638 (1.00) |
0.698 (1.00) |
0.159 (1.00) |
0.701 (1.00) |
0.353 (1.00) |
Del Peak 3(1q44) | 14 (6%) | 223 |
0.248 (1.00) |
0.137 (1.00) |
0.412 (1.00) |
0.84 (1.00) |
0.209 (1.00) |
0.0617 (1.00) |
Del Peak 4(2q32 1) | 28 (12%) | 209 |
0.00333 (1.00) |
0.473 (1.00) |
0.664 (1.00) |
0.73 (1.00) |
0.279 (1.00) |
0.0614 (1.00) |
Del Peak 5(2q33 3) | 23 (10%) | 214 |
0.00123 (0.392) |
0.39 (1.00) |
0.488 (1.00) |
0.696 (1.00) |
0.236 (1.00) |
P value = 7.55e-06 (Fisher's exact test), Q value = 0.0028
Table S1. Gene #1: 'Amp Peak 1(1p36.22) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 1(1P36.22) MUTATED | 1 | 21 | 2 |
AMP PEAK 1(1P36.22) WILD-TYPE | 29 | 78 | 106 |
Figure S1. Get High-res Image Gene #1: 'Amp Peak 1(1p36.22) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D1V1.png)
P value = 1.25e-14 (Fisher's exact test), Q value = 5.2e-12
Table S2. Gene #2: 'Amp Peak 2(1q21.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 2(1Q21.3) MUTATED | 11 | 56 | 8 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 19 | 43 | 100 |
Figure S2. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D2V1.png)
P value = 7.53e-06 (Fisher's exact test), Q value = 0.0028
Table S3. Gene #2: 'Amp Peak 2(1q21.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 2(1Q21.3) MUTATED | 2 | 13 | 12 | 31 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 25 | 39 | 43 | 24 |
Figure S3. Get High-res Image Gene #2: 'Amp Peak 2(1q21.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D2V2.png)
P value = 6.71e-13 (Fisher's exact test), Q value = 2.8e-10
Table S4. Gene #3: 'Amp Peak 3(1q42.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 3(1Q42.3) MUTATED | 10 | 54 | 9 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 20 | 45 | 99 |
Figure S4. Get High-res Image Gene #3: 'Amp Peak 3(1q42.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D3V1.png)
P value = 0.000639 (Fisher's exact test), Q value = 0.21
Table S5. Gene #3: 'Amp Peak 3(1q42.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 3(1Q42.3) MUTATED | 2 | 13 | 15 | 27 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 25 | 39 | 40 | 28 |
Figure S5. Get High-res Image Gene #3: 'Amp Peak 3(1q42.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D3V2.png)
P value = 9.69e-05 (Fisher's exact test), Q value = 0.033
Table S6. Gene #3: 'Amp Peak 3(1q42.3) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 55 | 92 |
AMP PEAK 3(1Q42.3) MUTATED | 19 | 10 | 43 |
AMP PEAK 3(1Q42.3) WILD-TYPE | 70 | 45 | 49 |
Figure S6. Get High-res Image Gene #3: 'Amp Peak 3(1q42.3) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
![](D3V5.png)
P value = 1.45e-05 (Fisher's exact test), Q value = 0.0052
Table S7. Gene #4: 'Amp Peak 4(3q26.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 4(3Q26.31) MUTATED | 10 | 42 | 15 |
AMP PEAK 4(3Q26.31) WILD-TYPE | 20 | 57 | 93 |
Figure S7. Get High-res Image Gene #4: 'Amp Peak 4(3q26.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D4V1.png)
P value = 1.17e-12 (Fisher's exact test), Q value = 4.8e-10
Table S8. Gene #5: 'Amp Peak 5(5p13.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 5(5P13.1) MUTATED | 3 | 48 | 7 |
AMP PEAK 5(5P13.1) WILD-TYPE | 27 | 51 | 101 |
Figure S8. Get High-res Image Gene #5: 'Amp Peak 5(5p13.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D5V1.png)
P value = 6.73e-13 (Fisher's exact test), Q value = 2.8e-10
Table S9. Gene #6: 'Amp Peak 6(6p21.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 6(6P21.1) MUTATED | 8 | 47 | 5 |
AMP PEAK 6(6P21.1) WILD-TYPE | 22 | 52 | 103 |
Figure S9. Get High-res Image Gene #6: 'Amp Peak 6(6p21.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D6V1.png)
P value = 7.52e-05 (Fisher's exact test), Q value = 0.026
Table S10. Gene #6: 'Amp Peak 6(6p21.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 6(6P21.1) MUTATED | 2 | 10 | 7 | 25 |
AMP PEAK 6(6P21.1) WILD-TYPE | 25 | 42 | 48 | 30 |
Figure S10. Get High-res Image Gene #6: 'Amp Peak 6(6p21.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D6V2.png)
P value = 7.48e-08 (Fisher's exact test), Q value = 2.9e-05
Table S11. Gene #7: 'Amp Peak 7(6q12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 7(6Q12) MUTATED | 6 | 32 | 4 |
AMP PEAK 7(6Q12) WILD-TYPE | 24 | 67 | 104 |
Figure S11. Get High-res Image Gene #7: 'Amp Peak 7(6q12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D7V1.png)
P value = 3.26e-11 (Fisher's exact test), Q value = 1.3e-08
Table S12. Gene #8: 'Amp Peak 8(7p11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 8(7P11.2) MUTATED | 14 | 63 | 19 |
AMP PEAK 8(7P11.2) WILD-TYPE | 16 | 36 | 89 |
Figure S12. Get High-res Image Gene #8: 'Amp Peak 8(7p11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D8V1.png)
P value = 0.000524 (Fisher's exact test), Q value = 0.17
Table S13. Gene #8: 'Amp Peak 8(7p11.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 8(7P11.2) MUTATED | 7 | 22 | 12 | 32 |
AMP PEAK 8(7P11.2) WILD-TYPE | 20 | 30 | 43 | 23 |
Figure S13. Get High-res Image Gene #8: 'Amp Peak 8(7p11.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D8V2.png)
P value = 3.67e-10 (Fisher's exact test), Q value = 1.5e-07
Table S14. Gene #9: 'Amp Peak 9(7q21.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 9(7Q21.2) MUTATED | 17 | 60 | 20 |
AMP PEAK 9(7Q21.2) WILD-TYPE | 13 | 39 | 88 |
Figure S14. Get High-res Image Gene #9: 'Amp Peak 9(7q21.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D9V1.png)
P value = 2.27e-16 (Fisher's exact test), Q value = 9.6e-14
Table S15. Gene #10: 'Amp Peak 10(8p23.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 10(8P23.1) MUTATED | 30 | 25 | 24 |
AMP PEAK 10(8P23.1) WILD-TYPE | 0 | 74 | 84 |
Figure S15. Get High-res Image Gene #10: 'Amp Peak 10(8p23.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D10V1.png)
P value = 6.39e-16 (Fisher's exact test), Q value = 2.7e-13
Table S16. Gene #11: 'Amp Peak 11(8q24.21) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 11(8Q24.21) MUTATED | 29 | 76 | 34 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 1 | 23 | 74 |
Figure S16. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D11V1.png)
P value = 0.000696 (Fisher's exact test), Q value = 0.23
Table S17. Gene #11: 'Amp Peak 11(8q24.21) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 11(8Q24.21) MUTATED | 8 | 26 | 27 | 41 |
AMP PEAK 11(8Q24.21) WILD-TYPE | 19 | 26 | 28 | 14 |
Figure S17. Get High-res Image Gene #11: 'Amp Peak 11(8q24.21) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D11V2.png)
P value = 4.1e-06 (Fisher's exact test), Q value = 0.0015
Table S18. Gene #13: 'Amp Peak 13(9q34.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 13(9Q34.3) MUTATED | 4 | 35 | 9 |
AMP PEAK 13(9Q34.3) WILD-TYPE | 26 | 64 | 99 |
Figure S18. Get High-res Image Gene #13: 'Amp Peak 13(9q34.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D13V1.png)
P value = 5.82e-05 (Fisher's exact test), Q value = 0.02
Table S19. Gene #14: 'Amp Peak 14(10q26.13) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 14(10Q26.13) MUTATED | 3 | 32 | 10 |
AMP PEAK 14(10Q26.13) WILD-TYPE | 27 | 67 | 98 |
Figure S19. Get High-res Image Gene #14: 'Amp Peak 14(10q26.13) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D14V1.png)
P value = 0.000315 (Fisher's exact test), Q value = 0.1
Table S20. Gene #15: 'Amp Peak 15(11p13) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 15(11P13) MUTATED | 5 | 26 | 7 |
AMP PEAK 15(11P13) WILD-TYPE | 25 | 73 | 101 |
Figure S20. Get High-res Image Gene #15: 'Amp Peak 15(11p13) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D15V1.png)
P value = 1.35e-06 (Fisher's exact test), Q value = 0.00051
Table S21. Gene #16: 'Amp Peak 16(11q13.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 16(11Q13.3) MUTATED | 6 | 34 | 7 |
AMP PEAK 16(11Q13.3) WILD-TYPE | 24 | 65 | 101 |
Figure S21. Get High-res Image Gene #16: 'Amp Peak 16(11q13.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D16V1.png)
P value = 4.47e-06 (Fisher's exact test), Q value = 0.0016
Table S22. Gene #17: 'Amp Peak 17(12p12.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 17(12P12.1) MUTATED | 5 | 38 | 11 |
AMP PEAK 17(12P12.1) WILD-TYPE | 25 | 61 | 97 |
Figure S22. Get High-res Image Gene #17: 'Amp Peak 17(12p12.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D17V1.png)
P value = 6.91e-05 (Fisher's exact test), Q value = 0.024
Table S23. Gene #18: 'Amp Peak 18(12q15) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 18(12Q15) MUTATED | 3 | 34 | 12 |
AMP PEAK 18(12Q15) WILD-TYPE | 27 | 65 | 96 |
Figure S23. Get High-res Image Gene #18: 'Amp Peak 18(12q15) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D18V1.png)
P value = 5.94e-09 (Fisher's exact test), Q value = 2.3e-06
Table S24. Gene #19: 'Amp Peak 19(13q12.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 19(13Q12.3) MUTATED | 9 | 55 | 17 |
AMP PEAK 19(13Q12.3) WILD-TYPE | 21 | 44 | 91 |
Figure S24. Get High-res Image Gene #19: 'Amp Peak 19(13q12.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D19V1.png)
P value = 2e-08 (Fisher's exact test), Q value = 7.8e-06
Table S25. Gene #20: 'Amp Peak 20(13q22.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 20(13Q22.1) MUTATED | 9 | 58 | 21 |
AMP PEAK 20(13Q22.1) WILD-TYPE | 21 | 41 | 87 |
Figure S25. Get High-res Image Gene #20: 'Amp Peak 20(13q22.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D20V1.png)
P value = 1.96e-14 (Fisher's exact test), Q value = 8.2e-12
Table S26. Gene #21: 'Amp Peak 21(15q26.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 21(15Q26.1) MUTATED | 0 | 46 | 6 |
AMP PEAK 21(15Q26.1) WILD-TYPE | 30 | 53 | 102 |
Figure S26. Get High-res Image Gene #21: 'Amp Peak 21(15q26.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D21V1.png)
P value = 0.000118 (Fisher's exact test), Q value = 0.04
Table S27. Gene #21: 'Amp Peak 21(15q26.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 21(15Q26.1) MUTATED | 0 | 11 | 9 | 22 |
AMP PEAK 21(15Q26.1) WILD-TYPE | 27 | 41 | 46 | 33 |
Figure S27. Get High-res Image Gene #21: 'Amp Peak 21(15q26.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D21V2.png)
P value = 7.74e-12 (Fisher's exact test), Q value = 3.2e-09
Table S28. Gene #22: 'Amp Peak 22(17q12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 22(17Q12) MUTATED | 2 | 49 | 10 |
AMP PEAK 22(17Q12) WILD-TYPE | 28 | 50 | 98 |
Figure S28. Get High-res Image Gene #22: 'Amp Peak 22(17q12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D22V1.png)
P value = 8.77e-07 (Fisher's exact test), Q value = 0.00033
Table S29. Gene #23: 'Amp Peak 23(18q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 23(18Q11.2) MUTATED | 4 | 43 | 14 |
AMP PEAK 23(18Q11.2) WILD-TYPE | 26 | 56 | 94 |
Figure S29. Get High-res Image Gene #23: 'Amp Peak 23(18q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D23V1.png)
P value = 6.26e-10 (Fisher's exact test), Q value = 2.5e-07
Table S30. Gene #24: 'Amp Peak 24(19q12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 24(19Q12) MUTATED | 3 | 47 | 11 |
AMP PEAK 24(19Q12) WILD-TYPE | 27 | 52 | 97 |
Figure S30. Get High-res Image Gene #24: 'Amp Peak 24(19q12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D24V1.png)
P value = 0.000449 (Fisher's exact test), Q value = 0.15
Table S31. Gene #24: 'Amp Peak 24(19q12) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 24(19Q12) MUTATED | 5 | 7 | 11 | 26 |
AMP PEAK 24(19Q12) WILD-TYPE | 22 | 45 | 44 | 29 |
Figure S31. Get High-res Image Gene #24: 'Amp Peak 24(19q12) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D24V2.png)
P value = 1.13e-05 (Fisher's exact test), Q value = 0.0041
Table S32. Gene #24: 'Amp Peak 24(19q12) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
AMP PEAK 24(19Q12) MUTATED | 29 | 21 | 10 |
AMP PEAK 24(19Q12) WILD-TYPE | 30 | 83 | 63 |
Figure S32. Get High-res Image Gene #24: 'Amp Peak 24(19q12) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D24V6.png)
P value = 9.23e-20 (Fisher's exact test), Q value = 4e-17
Table S33. Gene #25: 'Amp Peak 25(20q13.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 25(20Q13.2) MUTATED | 19 | 92 | 36 |
AMP PEAK 25(20Q13.2) WILD-TYPE | 11 | 7 | 72 |
Figure S33. Get High-res Image Gene #25: 'Amp Peak 25(20q13.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D25V1.png)
P value = 8.73e-06 (Fisher's exact test), Q value = 0.0032
Table S34. Gene #25: 'Amp Peak 25(20q13.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
AMP PEAK 25(20Q13.2) MUTATED | 17 | 25 | 26 | 48 |
AMP PEAK 25(20Q13.2) WILD-TYPE | 10 | 27 | 29 | 7 |
Figure S34. Get High-res Image Gene #25: 'Amp Peak 25(20q13.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D25V2.png)
P value = 1.82e-06 (Fisher's exact test), Q value = 0.00069
Table S35. Gene #26: 'Amp Peak 26(Xq27.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
AMP PEAK 26(XQ27.3) MUTATED | 5 | 32 | 6 |
AMP PEAK 26(XQ27.3) WILD-TYPE | 25 | 67 | 102 |
Figure S35. Get High-res Image Gene #26: 'Amp Peak 26(Xq27.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D26V1.png)
P value = 2.71e-12 (Fisher's exact test), Q value = 1.1e-09
Table S36. Gene #27: 'Del Peak 1(1p36.11) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 1(1P36.11) MUTATED | 5 | 50 | 8 |
DEL PEAK 1(1P36.11) WILD-TYPE | 25 | 49 | 100 |
Figure S36. Get High-res Image Gene #27: 'Del Peak 1(1p36.11) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D27V1.png)
P value = 7.78e-10 (Fisher's exact test), Q value = 3.1e-07
Table S37. Gene #28: 'Del Peak 2(1p31.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 2(1P31.1) MUTATED | 1 | 33 | 3 |
DEL PEAK 2(1P31.1) WILD-TYPE | 29 | 66 | 105 |
Figure S37. Get High-res Image Gene #28: 'Del Peak 2(1p31.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D28V1.png)
P value = 1.59e-05 (Fisher's exact test), Q value = 0.0057
Table S38. Gene #32: 'Del Peak 6(2q37.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 6(2Q37.2) MUTATED | 4 | 25 | 4 |
DEL PEAK 6(2Q37.2) WILD-TYPE | 26 | 74 | 104 |
Figure S38. Get High-res Image Gene #32: 'Del Peak 6(2q37.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D32V1.png)
P value = 2.49e-10 (Fisher's exact test), Q value = 1e-07
Table S39. Gene #33: 'Del Peak 7(3p26.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 7(3P26.1) MUTATED | 5 | 44 | 7 |
DEL PEAK 7(3P26.1) WILD-TYPE | 25 | 55 | 101 |
Figure S39. Get High-res Image Gene #33: 'Del Peak 7(3p26.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D33V1.png)
P value = 1.9e-11 (Fisher's exact test), Q value = 7.7e-09
Table S40. Gene #34: 'Del Peak 8(3p14.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 8(3P14.2) MUTATED | 9 | 52 | 10 |
DEL PEAK 8(3P14.2) WILD-TYPE | 21 | 47 | 98 |
Figure S40. Get High-res Image Gene #34: 'Del Peak 8(3p14.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D34V1.png)
P value = 1.42e-05 (Fisher's exact test), Q value = 0.0051
Table S41. Gene #35: 'Del Peak 9(3q26.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 9(3Q26.31) MUTATED | 1 | 18 | 1 |
DEL PEAK 9(3Q26.31) WILD-TYPE | 29 | 81 | 107 |
Figure S41. Get High-res Image Gene #35: 'Del Peak 9(3q26.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D35V1.png)
P value = 4.98e-12 (Fisher's exact test), Q value = 2e-09
Table S42. Gene #36: 'Del Peak 10(4p16.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 10(4P16.3) MUTATED | 5 | 57 | 14 |
DEL PEAK 10(4P16.3) WILD-TYPE | 25 | 42 | 94 |
Figure S42. Get High-res Image Gene #36: 'Del Peak 10(4p16.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D36V1.png)
P value = 2.73e-05 (Fisher's exact test), Q value = 0.0096
Table S43. Gene #36: 'Del Peak 10(4p16.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 10(4P16.3) MUTATED | 3 | 9 | 15 | 30 |
DEL PEAK 10(4P16.3) WILD-TYPE | 24 | 43 | 40 | 25 |
Figure S43. Get High-res Image Gene #36: 'Del Peak 10(4p16.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D36V2.png)
P value = 1.5e-06 (Fisher's exact test), Q value = 0.00057
Table S44. Gene #36: 'Del Peak 10(4p16.3) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 10(4P16.3) MUTATED | 35 | 21 | 19 |
DEL PEAK 10(4P16.3) WILD-TYPE | 24 | 83 | 54 |
Figure S44. Get High-res Image Gene #36: 'Del Peak 10(4p16.3) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D36V6.png)
P value = 2.01e-20 (Fisher's exact test), Q value = 8.6e-18
Table S45. Gene #37: 'Del Peak 11(4q22.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 11(4Q22.1) MUTATED | 6 | 72 | 13 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 24 | 27 | 95 |
Figure S45. Get High-res Image Gene #37: 'Del Peak 11(4q22.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D37V1.png)
P value = 1.38e-05 (Fisher's exact test), Q value = 0.005
Table S46. Gene #37: 'Del Peak 11(4q22.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 11(4Q22.1) MUTATED | 4 | 14 | 17 | 35 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 23 | 38 | 38 | 20 |
Figure S46. Get High-res Image Gene #37: 'Del Peak 11(4q22.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D37V2.png)
P value = 0.000205 (Fisher's exact test), Q value = 0.068
Table S47. Gene #37: 'Del Peak 11(4q22.1) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 11(4Q22.1) MUTATED | 36 | 31 | 23 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 23 | 73 | 50 |
Figure S47. Get High-res Image Gene #37: 'Del Peak 11(4q22.1) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D37V6.png)
P value = 8.78e-18 (Fisher's exact test), Q value = 3.7e-15
Table S48. Gene #38: 'Del Peak 12(4q35.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 12(4Q35.1) MUTATED | 5 | 68 | 14 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 25 | 31 | 94 |
Figure S48. Get High-res Image Gene #38: 'Del Peak 12(4q35.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D38V1.png)
P value = 6.78e-05 (Fisher's exact test), Q value = 0.023
Table S49. Gene #38: 'Del Peak 12(4q35.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 12(4Q35.1) MUTATED | 2 | 15 | 19 | 31 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 25 | 37 | 36 | 24 |
Figure S49. Get High-res Image Gene #38: 'Del Peak 12(4q35.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D38V2.png)
P value = 0.000188 (Fisher's exact test), Q value = 0.063
Table S50. Gene #38: 'Del Peak 12(4q35.1) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 12(4Q35.1) MUTATED | 35 | 30 | 21 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 24 | 74 | 52 |
Figure S50. Get High-res Image Gene #38: 'Del Peak 12(4q35.1) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D38V6.png)
P value = 4.27e-19 (Fisher's exact test), Q value = 1.8e-16
Table S51. Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 13(5Q11.2) MUTATED | 4 | 60 | 6 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 26 | 39 | 102 |
Figure S51. Get High-res Image Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D39V1.png)
P value = 4.64e-09 (Fisher's exact test), Q value = 1.8e-06
Table S52. Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 13(5Q11.2) MUTATED | 1 | 12 | 9 | 34 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 26 | 40 | 46 | 21 |
Figure S52. Get High-res Image Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D39V2.png)
P value = 2.27e-05 (Fisher's exact test), Q value = 0.008
Table S53. Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 55 | 92 |
DEL PEAK 13(5Q11.2) MUTATED | 24 | 5 | 40 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 65 | 50 | 52 |
Figure S53. Get High-res Image Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
![](D39V5.png)
P value = 4.05e-06 (Fisher's exact test), Q value = 0.0015
Table S54. Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 13(5Q11.2) MUTATED | 32 | 26 | 11 |
DEL PEAK 13(5Q11.2) WILD-TYPE | 27 | 78 | 62 |
Figure S54. Get High-res Image Gene #39: 'Del Peak 13(5q11.2) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D39V6.png)
P value = 2.05e-07 (Fisher's exact test), Q value = 7.8e-05
Table S55. Gene #40: 'Del Peak 14(6p25.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 14(6P25.3) MUTATED | 2 | 37 | 9 |
DEL PEAK 14(6P25.3) WILD-TYPE | 28 | 62 | 99 |
Figure S55. Get High-res Image Gene #40: 'Del Peak 14(6p25.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D40V1.png)
P value = 0.000293 (Fisher's exact test), Q value = 0.097
Table S56. Gene #40: 'Del Peak 14(6p25.3) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 14(6P25.3) MUTATED | 23 | 17 | 8 |
DEL PEAK 14(6P25.3) WILD-TYPE | 36 | 87 | 65 |
Figure S56. Get High-res Image Gene #40: 'Del Peak 14(6p25.3) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D40V6.png)
P value = 9.44e-06 (Fisher's exact test), Q value = 0.0034
Table S57. Gene #41: 'Del Peak 15(6q26) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 15(6Q26) MUTATED | 4 | 34 | 9 |
DEL PEAK 15(6Q26) WILD-TYPE | 26 | 65 | 99 |
Figure S57. Get High-res Image Gene #41: 'Del Peak 15(6q26) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D41V1.png)
P value = 2.44e-06 (Fisher's exact test), Q value = 0.00091
Table S58. Gene #42: 'Del Peak 16(6q27) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 16(6Q27) MUTATED | 3 | 35 | 9 |
DEL PEAK 16(6Q27) WILD-TYPE | 27 | 64 | 99 |
Figure S58. Get High-res Image Gene #42: 'Del Peak 16(6q27) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D42V1.png)
P value = 4.84e-06 (Fisher's exact test), Q value = 0.0018
Table S59. Gene #43: 'Del Peak 17(7q31.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 17(7Q31.1) MUTATED | 2 | 22 | 2 |
DEL PEAK 17(7Q31.1) WILD-TYPE | 28 | 77 | 106 |
Figure S59. Get High-res Image Gene #43: 'Del Peak 17(7q31.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D43V1.png)
P value = 2.54e-10 (Fisher's exact test), Q value = 1e-07
Table S60. Gene #44: 'Del Peak 18(7q36.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 18(7Q36.3) MUTATED | 3 | 36 | 3 |
DEL PEAK 18(7Q36.3) WILD-TYPE | 27 | 63 | 105 |
Figure S60. Get High-res Image Gene #44: 'Del Peak 18(7q36.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D44V1.png)
P value = 8.79e-14 (Fisher's exact test), Q value = 3.6e-11
Table S61. Gene #45: 'Del Peak 19(8p23.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 19(8P23.2) MUTATED | 1 | 48 | 7 |
DEL PEAK 19(8P23.2) WILD-TYPE | 29 | 51 | 101 |
Figure S61. Get High-res Image Gene #45: 'Del Peak 19(8p23.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D45V1.png)
P value = 6.65e-05 (Fisher's exact test), Q value = 0.023
Table S62. Gene #45: 'Del Peak 19(8p23.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 19(8P23.2) MUTATED | 0 | 9 | 12 | 23 |
DEL PEAK 19(8P23.2) WILD-TYPE | 27 | 43 | 43 | 32 |
Figure S62. Get High-res Image Gene #45: 'Del Peak 19(8p23.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D45V2.png)
P value = 0.000177 (Fisher's exact test), Q value = 0.06
Table S63. Gene #45: 'Del Peak 19(8p23.2) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 19(8P23.2) MUTATED | 26 | 18 | 11 |
DEL PEAK 19(8P23.2) WILD-TYPE | 33 | 86 | 62 |
Figure S63. Get High-res Image Gene #45: 'Del Peak 19(8p23.2) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D45V6.png)
P value = 5.78e-16 (Fisher's exact test), Q value = 2.4e-13
Table S64. Gene #46: 'Del Peak 20(9p23) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 20(9P23) MUTATED | 11 | 66 | 13 |
DEL PEAK 20(9P23) WILD-TYPE | 19 | 33 | 95 |
Figure S64. Get High-res Image Gene #46: 'Del Peak 20(9p23) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D46V1.png)
P value = 3.46e-16 (Fisher's exact test), Q value = 1.5e-13
Table S65. Gene #47: 'Del Peak 21(9p21.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 21(9P21.3) MUTATED | 9 | 66 | 13 |
DEL PEAK 21(9P21.3) WILD-TYPE | 21 | 33 | 95 |
Figure S65. Get High-res Image Gene #47: 'Del Peak 21(9p21.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D47V1.png)
P value = 1.63e-08 (Fisher's exact test), Q value = 6.3e-06
Table S66. Gene #47: 'Del Peak 21(9p21.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 21(9P21.3) MUTATED | 2 | 14 | 16 | 38 |
DEL PEAK 21(9P21.3) WILD-TYPE | 25 | 38 | 39 | 17 |
Figure S66. Get High-res Image Gene #47: 'Del Peak 21(9p21.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D47V2.png)
P value = 2.65e-08 (Fisher's exact test), Q value = 1e-05
Table S67. Gene #48: 'Del Peak 22(9q21.11) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 22(9Q21.11) MUTATED | 6 | 39 | 7 |
DEL PEAK 22(9Q21.11) WILD-TYPE | 24 | 60 | 101 |
Figure S67. Get High-res Image Gene #48: 'Del Peak 22(9q21.11) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D48V1.png)
P value = 3.4e-07 (Fisher's exact test), Q value = 0.00013
Table S68. Gene #49: 'Del Peak 23(10p14) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 23(10P14) MUTATED | 3 | 28 | 3 |
DEL PEAK 23(10P14) WILD-TYPE | 27 | 71 | 105 |
Figure S68. Get High-res Image Gene #49: 'Del Peak 23(10p14) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D49V1.png)
P value = 2.26e-08 (Fisher's exact test), Q value = 8.7e-06
Table S69. Gene #50: 'Del Peak 24(10q22.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 24(10Q22.3) MUTATED | 3 | 29 | 2 |
DEL PEAK 24(10Q22.3) WILD-TYPE | 27 | 70 | 106 |
Figure S69. Get High-res Image Gene #50: 'Del Peak 24(10q22.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D50V1.png)
P value = 2.17e-14 (Fisher's exact test), Q value = 9e-12
Table S70. Gene #51: 'Del Peak 25(10q23.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 25(10Q23.31) MUTATED | 5 | 46 | 3 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 25 | 53 | 105 |
Figure S70. Get High-res Image Gene #51: 'Del Peak 25(10q23.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D51V1.png)
P value = 8.96e-05 (Fisher's exact test), Q value = 0.031
Table S71. Gene #51: 'Del Peak 25(10q23.31) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 55 | 92 |
DEL PEAK 25(10Q23.31) MUTATED | 24 | 2 | 28 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 65 | 53 | 64 |
Figure S71. Get High-res Image Gene #51: 'Del Peak 25(10q23.31) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
![](D51V5.png)
P value = 4.69e-05 (Fisher's exact test), Q value = 0.017
Table S72. Gene #51: 'Del Peak 25(10q23.31) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 25(10Q23.31) MUTATED | 22 | 27 | 5 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 37 | 77 | 68 |
Figure S72. Get High-res Image Gene #51: 'Del Peak 25(10q23.31) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D51V6.png)
P value = 2.23e-09 (Fisher's exact test), Q value = 8.8e-07
Table S73. Gene #52: 'Del Peak 26(11p15.5) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 26(11P15.5) MUTATED | 1 | 38 | 7 |
DEL PEAK 26(11P15.5) WILD-TYPE | 29 | 61 | 101 |
Figure S73. Get High-res Image Gene #52: 'Del Peak 26(11p15.5) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D52V1.png)
P value = 0.000245 (Fisher's exact test), Q value = 0.081
Table S74. Gene #53: 'Del Peak 27(11q23.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 27(11Q23.2) MUTATED | 3 | 30 | 10 |
DEL PEAK 27(11Q23.2) WILD-TYPE | 27 | 69 | 98 |
Figure S74. Get High-res Image Gene #53: 'Del Peak 27(11q23.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D53V1.png)
P value = 0.000202 (Fisher's exact test), Q value = 0.068
Table S75. Gene #53: 'Del Peak 27(11q23.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 27(11Q23.2) MUTATED | 1 | 3 | 10 | 19 |
DEL PEAK 27(11Q23.2) WILD-TYPE | 26 | 49 | 45 | 36 |
Figure S75. Get High-res Image Gene #53: 'Del Peak 27(11q23.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D53V2.png)
P value = 5.3e-09 (Fisher's exact test), Q value = 2.1e-06
Table S76. Gene #54: 'Del Peak 28(12p13.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 28(12P13.2) MUTATED | 2 | 30 | 2 |
DEL PEAK 28(12P13.2) WILD-TYPE | 28 | 69 | 106 |
Figure S76. Get High-res Image Gene #54: 'Del Peak 28(12p13.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D54V1.png)
P value = 3.95e-06 (Fisher's exact test), Q value = 0.0015
Table S77. Gene #55: 'Del Peak 29(14q21.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 29(14Q21.1) MUTATED | 5 | 37 | 10 |
DEL PEAK 29(14Q21.1) WILD-TYPE | 25 | 62 | 98 |
Figure S77. Get High-res Image Gene #55: 'Del Peak 29(14q21.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D55V1.png)
P value = 1.88e-06 (Fisher's exact test), Q value = 7e-04
Table S78. Gene #56: 'Del Peak 30(14q32.33) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 30(14Q32.33) MUTATED | 6 | 41 | 12 |
DEL PEAK 30(14Q32.33) WILD-TYPE | 24 | 58 | 96 |
Figure S78. Get High-res Image Gene #56: 'Del Peak 30(14q32.33) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D56V1.png)
P value = 1.01e-11 (Fisher's exact test), Q value = 4.1e-09
Table S79. Gene #57: 'Del Peak 31(15q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 31(15Q11.2) MUTATED | 3 | 46 | 7 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 27 | 53 | 101 |
Figure S79. Get High-res Image Gene #57: 'Del Peak 31(15q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D57V1.png)
P value = 0.000138 (Fisher's exact test), Q value = 0.047
Table S80. Gene #57: 'Del Peak 31(15q11.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 31(15Q11.2) MUTATED | 4 | 8 | 8 | 26 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 23 | 44 | 47 | 29 |
Figure S80. Get High-res Image Gene #57: 'Del Peak 31(15q11.2) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D57V2.png)
P value = 0.000107 (Fisher's exact test), Q value = 0.036
Table S81. Gene #57: 'Del Peak 31(15q11.2) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 31(15Q11.2) MUTATED | 26 | 21 | 9 |
DEL PEAK 31(15Q11.2) WILD-TYPE | 33 | 83 | 64 |
Figure S81. Get High-res Image Gene #57: 'Del Peak 31(15q11.2) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D57V6.png)
P value = 2.63e-10 (Fisher's exact test), Q value = 1.1e-07
Table S82. Gene #58: 'Del Peak 32(15q15.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 32(15Q15.1) MUTATED | 4 | 45 | 8 |
DEL PEAK 32(15Q15.1) WILD-TYPE | 26 | 54 | 100 |
Figure S82. Get High-res Image Gene #58: 'Del Peak 32(15q15.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D58V1.png)
P value = 0.000661 (Fisher's exact test), Q value = 0.21
Table S83. Gene #58: 'Del Peak 32(15q15.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 32(15Q15.1) MUTATED | 5 | 8 | 7 | 24 |
DEL PEAK 32(15Q15.1) WILD-TYPE | 22 | 44 | 48 | 31 |
Figure S83. Get High-res Image Gene #58: 'Del Peak 32(15q15.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D58V2.png)
P value = 5.96e-05 (Fisher's exact test), Q value = 0.021
Table S84. Gene #58: 'Del Peak 32(15q15.1) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 32(15Q15.1) MUTATED | 26 | 23 | 8 |
DEL PEAK 32(15Q15.1) WILD-TYPE | 33 | 81 | 65 |
Figure S84. Get High-res Image Gene #58: 'Del Peak 32(15q15.1) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D58V6.png)
P value = 3.76e-06 (Fisher's exact test), Q value = 0.0014
Table S85. Gene #59: 'Del Peak 33(16p13.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 33(16P13.3) MUTATED | 3 | 27 | 4 |
DEL PEAK 33(16P13.3) WILD-TYPE | 27 | 72 | 104 |
Figure S85. Get High-res Image Gene #59: 'Del Peak 33(16p13.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D59V1.png)
P value = 1.79e-05 (Fisher's exact test), Q value = 0.0064
Table S86. Gene #60: 'Del Peak 34(16q23.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 34(16Q23.1) MUTATED | 8 | 47 | 19 |
DEL PEAK 34(16Q23.1) WILD-TYPE | 22 | 52 | 89 |
Figure S86. Get High-res Image Gene #60: 'Del Peak 34(16q23.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D60V1.png)
P value = 6.8e-23 (Fisher's exact test), Q value = 2.9e-20
Table S87. Gene #61: 'Del Peak 35(17p12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 35(17P12) MUTATED | 3 | 68 | 8 |
DEL PEAK 35(17P12) WILD-TYPE | 27 | 31 | 100 |
Figure S87. Get High-res Image Gene #61: 'Del Peak 35(17p12) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D61V1.png)
P value = 2.51e-06 (Fisher's exact test), Q value = 0.00094
Table S88. Gene #61: 'Del Peak 35(17p12) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 35(17P12) MUTATED | 4 | 14 | 11 | 34 |
DEL PEAK 35(17P12) WILD-TYPE | 23 | 38 | 44 | 21 |
Figure S88. Get High-res Image Gene #61: 'Del Peak 35(17p12) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D61V2.png)
P value = 2.01e-05 (Fisher's exact test), Q value = 0.0071
Table S89. Gene #61: 'Del Peak 35(17p12) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 35(17P12) MUTATED | 33 | 32 | 13 |
DEL PEAK 35(17P12) WILD-TYPE | 26 | 72 | 60 |
Figure S89. Get High-res Image Gene #61: 'Del Peak 35(17p12) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D61V6.png)
P value = 2.57e-08 (Fisher's exact test), Q value = 9.9e-06
Table S90. Gene #62: 'Del Peak 36(17q24.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 36(17Q24.3) MUTATED | 5 | 29 | 2 |
DEL PEAK 36(17Q24.3) WILD-TYPE | 25 | 70 | 106 |
Figure S90. Get High-res Image Gene #62: 'Del Peak 36(17q24.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D62V1.png)
P value = 5.1e-16 (Fisher's exact test), Q value = 2.2e-13
Table S91. Gene #63: 'Del Peak 37(18q21.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 37(18Q21.2) MUTATED | 3 | 70 | 22 |
DEL PEAK 37(18Q21.2) WILD-TYPE | 27 | 29 | 86 |
Figure S91. Get High-res Image Gene #63: 'Del Peak 37(18q21.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D63V1.png)
P value = 8.51e-16 (Fisher's exact test), Q value = 3.6e-13
Table S92. Gene #64: 'Del Peak 38(18q22.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 38(18Q22.3) MUTATED | 2 | 68 | 22 |
DEL PEAK 38(18Q22.3) WILD-TYPE | 28 | 31 | 86 |
Figure S92. Get High-res Image Gene #64: 'Del Peak 38(18q22.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D64V1.png)
P value = 2.46e-25 (Fisher's exact test), Q value = 1.1e-22
Table S93. Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 39(19P13.3) MUTATED | 2 | 65 | 4 |
DEL PEAK 39(19P13.3) WILD-TYPE | 28 | 34 | 104 |
Figure S93. Get High-res Image Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D65V1.png)
P value = 7.57e-09 (Fisher's exact test), Q value = 3e-06
Table S94. Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 39(19P13.3) MUTATED | 1 | 12 | 8 | 33 |
DEL PEAK 39(19P13.3) WILD-TYPE | 26 | 40 | 47 | 22 |
Figure S94. Get High-res Image Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D65V2.png)
P value = 8.93e-05 (Fisher's exact test), Q value = 0.031
Table S95. Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 55 | 92 |
DEL PEAK 39(19P13.3) MUTATED | 22 | 7 | 41 |
DEL PEAK 39(19P13.3) WILD-TYPE | 67 | 48 | 51 |
Figure S95. Get High-res Image Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #5: 'MIRSEQ_CNMF'
![](D65V5.png)
P value = 1.55e-09 (Fisher's exact test), Q value = 6.1e-07
Table S96. Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 39(19P13.3) MUTATED | 37 | 23 | 10 |
DEL PEAK 39(19P13.3) WILD-TYPE | 22 | 81 | 63 |
Figure S96. Get High-res Image Gene #65: 'Del Peak 39(19p13.3) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D65V6.png)
P value = 8.54e-10 (Fisher's exact test), Q value = 3.4e-07
Table S97. Gene #66: 'Del Peak 40(19q13.11) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 40(19Q13.11) MUTATED | 1 | 28 | 1 |
DEL PEAK 40(19Q13.11) WILD-TYPE | 29 | 71 | 107 |
Figure S97. Get High-res Image Gene #66: 'Del Peak 40(19q13.11) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D66V1.png)
P value = 4.99e-05 (Fisher's exact test), Q value = 0.018
Table S98. Gene #66: 'Del Peak 40(19q13.11) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 40(19Q13.11) MUTATED | 0 | 6 | 1 | 15 |
DEL PEAK 40(19Q13.11) WILD-TYPE | 27 | 46 | 54 | 40 |
Figure S98. Get High-res Image Gene #66: 'Del Peak 40(19q13.11) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D66V2.png)
P value = 5.22e-05 (Fisher's exact test), Q value = 0.018
Table S99. Gene #66: 'Del Peak 40(19q13.11) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 40(19Q13.11) MUTATED | 18 | 7 | 5 |
DEL PEAK 40(19Q13.11) WILD-TYPE | 41 | 97 | 68 |
Figure S99. Get High-res Image Gene #66: 'Del Peak 40(19q13.11) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D66V6.png)
P value = 9.18e-06 (Fisher's exact test), Q value = 0.0033
Table S100. Gene #67: 'Del Peak 41(20p12.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 41(20P12.1) MUTATED | 3 | 26 | 4 |
DEL PEAK 41(20P12.1) WILD-TYPE | 27 | 73 | 104 |
Figure S100. Get High-res Image Gene #67: 'Del Peak 41(20p12.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D67V1.png)
P value = 0.000113 (Fisher's exact test), Q value = 0.038
Table S101. Gene #67: 'Del Peak 41(20p12.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 41(20P12.1) MUTATED | 2 | 5 | 2 | 18 |
DEL PEAK 41(20P12.1) WILD-TYPE | 25 | 47 | 53 | 37 |
Figure S101. Get High-res Image Gene #67: 'Del Peak 41(20p12.1) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D67V2.png)
P value = 2.9e-11 (Fisher's exact test), Q value = 1.2e-08
Table S102. Gene #68: 'Del Peak 42(21q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 42(21Q11.2) MUTATED | 7 | 54 | 12 |
DEL PEAK 42(21Q11.2) WILD-TYPE | 23 | 45 | 96 |
Figure S102. Get High-res Image Gene #68: 'Del Peak 42(21q11.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D68V1.png)
P value = 7.53e-15 (Fisher's exact test), Q value = 3.2e-12
Table S103. Gene #69: 'Del Peak 43(22q13.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 43(22Q13.31) MUTATED | 6 | 56 | 8 |
DEL PEAK 43(22Q13.31) WILD-TYPE | 24 | 43 | 100 |
Figure S103. Get High-res Image Gene #69: 'Del Peak 43(22q13.31) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D69V1.png)
P value = 1.14e-08 (Fisher's exact test), Q value = 4.5e-06
Table S104. Gene #69: 'Del Peak 43(22q13.31) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 27 | 52 | 55 | 55 |
DEL PEAK 43(22Q13.31) MUTATED | 0 | 14 | 8 | 31 |
DEL PEAK 43(22Q13.31) WILD-TYPE | 27 | 38 | 47 | 24 |
Figure S104. Get High-res Image Gene #69: 'Del Peak 43(22q13.31) mutation analysis' versus Clinical Feature #2: 'METHLYATION_CNMF'
![](D69V2.png)
P value = 0.00021 (Fisher's exact test), Q value = 0.07
Table S105. Gene #69: 'Del Peak 43(22q13.31) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 104 | 73 |
DEL PEAK 43(22Q13.31) MUTATED | 29 | 28 | 12 |
DEL PEAK 43(22Q13.31) WILD-TYPE | 30 | 76 | 61 |
Figure S105. Get High-res Image Gene #69: 'Del Peak 43(22q13.31) mutation analysis' versus Clinical Feature #6: 'MIRSEQ_CHIERARCHICAL'
![](D69V6.png)
P value = 3.96e-08 (Fisher's exact test), Q value = 1.5e-05
Table S106. Gene #70: 'Del Peak 44(Xp22.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 44(XP22.2) MUTATED | 1 | 32 | 5 |
DEL PEAK 44(XP22.2) WILD-TYPE | 29 | 67 | 103 |
Figure S106. Get High-res Image Gene #70: 'Del Peak 44(Xp22.2) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D70V1.png)
P value = 1.09e-10 (Fisher's exact test), Q value = 4.4e-08
Table S107. Gene #71: 'Del Peak 45(Xp21.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 45(XP21.1) MUTATED | 0 | 31 | 2 |
DEL PEAK 45(XP21.1) WILD-TYPE | 30 | 68 | 106 |
Figure S107. Get High-res Image Gene #71: 'Del Peak 45(Xp21.1) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D71V1.png)
P value = 3.68e-07 (Fisher's exact test), Q value = 0.00014
Table S108. Gene #72: 'Del Peak 46(Xq21.33) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 99 | 108 |
DEL PEAK 46(XQ21.33) MUTATED | 0 | 26 | 4 |
DEL PEAK 46(XQ21.33) WILD-TYPE | 30 | 73 | 104 |
Figure S108. Get High-res Image Gene #72: 'Del Peak 46(Xq21.33) mutation analysis' versus Clinical Feature #1: 'CN_CNMF'
![](D72V1.png)
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Copy number data file = All Lesions File (all_lesions.conf_##.txt, where ## is the confidence level). The all lesions file is from GISTIC pipeline and summarizes the results from the GISTIC run. It contains data about the significant regions of amplification and deletion as well as which samples are amplified or deleted in each of these regions. The identified regions are listed down the first column, and the samples are listed across the first row, starting in column 10.
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Molecular subtype file = STAD-TP.transferedmergedcluster.txt
-
Number of patients = 237
-
Number of copy number variation regions = 72
-
Number of molecular subtypes = 6
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Exclude regions that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.