WARNING: the dataset is not col-normalized (recommended with Pearson correlation)
min sampled: 9
max sampled: 20
avg sampled: 15.986547
17 14 18 15 15 20 16 19 15 16 15 16 14 18 16 16 15 16 17 14 15 16 17 16 15 16 16 17 18 15 14 17 17 17 16 15 13 12 16 18 18 18 19 15 19 14 16 13 16 15 16 14 16 14 16 16 16 16 16 15 13 14 15 18 15 15 19 13 15 16 17 17 15 15 17 14 16 14 13 15 15 17 18 18 17 17 15 16 16 15 17 16 16 16 15 15 16 13 17 15 16 17 18 16 15 14 16 17 15 9 17 16 19 13 18 14 16 13 14 16 18 15 16 17 18 13 17 15 15 14 15 18 14 16 15 14 18 17 13 19 12 17 17 16 17 17 16 15 17 16 15 14 17 16 17 16 16 15 15 13 15 17 12 14 15 18 16 19 11 17 15 14 15 16 19 16 18 17 17 19 15 16 15 16 18 16 18 18 15 18 15 17 18 14 14 16 16 15 20 18 18 18 15 14 18 16 16 17 17 15 13 17 15 14 14 16 13 16 16 12 16 15 13 17 15 17 19 15 18 15 18 16 16 17 15 17 12 16 16 17 15 18 13 15 15 15 16 15 16 18 16 17 16 16 16 19 17 14 16 16 19 15 16 14 16 14 14 13 13 14 14 14 15 16 17 16 16 17 18 11 17 18 17 19 18 19 16 17 17 18 13 14 16 16 16 17 15 19 17 14 15 16 17 16 20 17 17 18 14 18 15 16 19 17 15 16 18 17 17 13 17 16 16 18 16 15 17 17 15 20 14 13 17 16 14 16 19 17 17 19 16 20 13 15 13 16 13 18 17 12 16 16 15 16 16 16 15 18 15 17 17 16 15 15 12 15 19 19 17 17 13 19 18 15 16 18 14 17 15 12 18 16 15 13 17 15 17 15 19 13 17 16 13 16 15 15 16 17 15 15 19 16 18 17 17 17 15 14 13 14 15 15 16 17 17 18 17 14 18 15 18 18 13 17 20 16 17 18 16 15 17 16 19 14 13 15 17 16 17 15 18 16 15 17 13 16 17 18 16 16 14 17 15 18 17 14 14 16 15 15 12 15 17 17 15 14 16 13 14 18 13 15 18 15 18 17 16 15 18 13 14 17 19 16 18 14 18 17 14 15 16 18 14 17 14 17 14 19 16 15 14 17 15 15 14 17 16 15 17 15 18 14 16 11 17 13 14 17 14 19 16 15 12 15 16 17 17 19 15 18 18 15 16 13 15 16 16 15 15 19 15 15 19 16 13 16 16 13 19 13 15 18 17 16 14 15 14 17 16 17 16 16 14 15 12 15 17 16 14 16 18 14 16 14 16 18 18 14 14 18 17 16 16 18 18 16 14 18 17 17 17 17 17 16 16 17 16 17 17 16 17 15 17 18 13 19 15 15 17 19 15 14 17 17 17 18 16 16 14 17 18 17 14 19 14 17 13 11 16 13 18 15 16 17 16 18 16 18 13 19 16 17 16 18 14 18 15 15 19 15 16 16 17 15 15 17 14 17 17 17 18 17 16 15 18 19 16 17 16 16 16 17 13 18 16 14 16 17 17 16 15 16 16 17 19 15 17 16 18 16 15 15 18 20 17 13 16 17 18 14 11 15 16 11 14 14 17 16 13 15 16 17 15 16 17 17 18 13 15 15 15 15 16 17 14 16 15 17 14 17 17 17 19 13 16 16 17 16 14 16 16 16 18 16 19 16 18 18 18 14 17 16 18 15 19 17 16 14 17 16 17 13 19 19 16 15 20 16 16 19 15 18 16 17 20 16 16 17 17 12 19 14 18 15 15 14 14 15 13 17 12 17 17 15 15 16 15 16 16 14 17 17 17 15 16 18 17 17 15 17 17 18 19 13 16 17 17 16 17 18 16 13 20 16 18 16 16 15 17 16 17 18 17 16 15 16 19 14 15 13 15 18 14 15 14 18 16 18 17 16 16 14 14 19 16 17 18 18 17 15 19 16 18 16 16 15 15 18 17 14 17 17 14 17 15 17 15 19 14 17 14 16 16 15 18 17 17 19 14 15 17 17 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub713.2.gct' ..

	processing file 'outputprefix.expclu.sub713.3.gct' ..

	processing file 'outputprefix.expclu.sub713.4.gct' ..

	processing file 'outputprefix.expclu.sub713.5.gct' ..

	processing file 'outputprefix.expclu.sub713.6.gct' ..

	processing file 'outputprefix.expclu.sub713.7.gct' ..

	processing file 'outputprefix.expclu.sub713.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub713.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1641>
Subject: Job 2282274: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/373353/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> in cluster cgalsf Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/373353/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <node1421> by user <cgaadm> in cluster <cgalsf>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cgalsf>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/373354> was used as the working directory.
Started at Tue Apr  9 08:49:56 2013
Results reported at Tue Apr  9 09:20:34 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/373353/outputprefix.expclu.gct 8 20 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1833.64 sec.
    Max Memory :       559 MB
    Max Swap   :      1083 MB

    Max Processes  :         4
    Max Threads    :        27

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
