
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/378015/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BRCA-TP/2919216/1.GDAC_mergedClustering.Finished/BRCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BRCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=BRCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=929, in cluster file=913, common to both=913
[1]  80 913
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               95               818 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               95               818 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              487               426 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              487               426 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               48               865 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               48               865 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               888 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               888 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               57               856 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               57               856 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               99               814 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               99               814 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               29               884 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               29               884 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               27               886 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               27               886 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              172               741 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              172               741 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              108               805 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              108               805 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              104               809 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              104               809 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               852 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               61               852 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              158               755 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              158               755 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              118               795 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              118               795 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              175               738 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              175               738 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              381               532 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              381               532 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               68               845 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               68               845 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               56               857 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               56               857 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               110                803 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               110                803 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                45                868 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                45                868 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                67                846 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                67                846 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                46                867 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                46                867 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               115                798 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               115                798 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                87                826 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                87                826 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                47                866 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                47                866 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                77                836 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                77                836 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                45                868 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                45                868 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               254                659 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               254                659 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                56                857 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                56                857 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                47                866 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                47                866 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               123                790 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               123                790 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                87                826 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                87                826 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                77                836 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                77                836 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                69                844 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                69                844 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                86                827 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                86                827 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               239                674 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               239                674 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               276                637 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               276                637 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
               104                809 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
               104                809 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                43                870 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                43                870 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               21               892 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               21               892 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              123               790 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              123               790 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               891 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               22               891 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               75               838 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               75               838 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               91               822 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               91               822 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               92               821 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               92               821 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               44               869 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               44               869 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              185               728 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              185               728 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              155               758 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              155               758 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               73               840 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               73               840 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              124               789 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              124               789 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              109               804 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              109               804 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              171               742 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              171               742 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               48               865 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               48               865 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               64               849 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               64               849 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              270               643 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              270               643 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               46               867 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               46               867 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              190               723 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              190               723 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              147               766 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              147               766 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                75                838 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                75                838 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               111                802 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               111                802 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               144                769 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               144                769 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               229                684 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               229                684 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                67                846 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                67                846 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                52                861 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                52                861 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               267                646 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               267                646 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               136                777 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               136                777 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               162                751 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               162                751 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                55                858 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                55                858 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               390                523 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               390                523 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               373                540 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               373                540 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               143                770 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               143                770 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               175                738 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               175                738 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               177                736 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               177                736 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                67                846 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                67                846 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                53                860 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                53                860 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                53                860 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                53                860 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                29                884 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                29                884 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                86                827 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                86                827 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               306                607 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               306                607 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               31               882 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               31               882 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 913 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 913 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=8, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=8, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, multiclass
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14               126
  CLUS_2              34                91
  CLUS_3              17               231
D1V3, multiclass
D1V4, multiclass
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              35               112
  CLUS_2              13               120
  CLUS_3               6               111
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              20               141
  CLUS_2               5               105
  CLUS_3              29                97
D1V7, multiclass
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              21               315
  CLUS_2              43               162
  CLUS_3              23               264
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              14               187
  CLUS_2              30               399
  CLUS_3              45               204
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              39               165
  CLUS_2              42               574
  CLUS_3               8                51

Clustering(2) Variable = 1q gain mutation analysis
D2V1, multiclass
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              82                58
  CLUS_2              67                58
  CLUS_3             141               107
D2V3, multiclass
D2V4, multiclass
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              79                68
  CLUS_2              84                49
  CLUS_3              59                58
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              99                62
  CLUS_2              57                53
  CLUS_3              66                60
D2V7, multiclass
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1             183               153
  CLUS_2              99               106
  CLUS_3             164               123
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              94               107
  CLUS_2             245               184
  CLUS_3             128               121
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              93               111
  CLUS_2             341               275
  CLUS_3              33                26

Clustering(3) Variable = 2p gain mutation analysis
D3V1, multiclass
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               0               140
  CLUS_2              25               100
  CLUS_3               8               240
D3V3, multiclass
D3V4, multiclass
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              24               123
  CLUS_2               0               133
  CLUS_3               4               113
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4               157
  CLUS_2               1               109
  CLUS_3              23               103
D3V7, multiclass
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              13               323
  CLUS_2              34               171
  CLUS_3               0               287
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1               200
  CLUS_2               8               421
  CLUS_3              33               216
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              27               177
  CLUS_2              10               606
  CLUS_3               5                54

Clustering(4) Variable = 2q gain mutation analysis
D4V1, multiclass
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0               140
  CLUS_2              13               112
  CLUS_3               6               242
D4V3, multiclass
D4V4, multiclass
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              16               131
  CLUS_2               0               133
  CLUS_3               0               117
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4               157
  CLUS_2               0               110
  CLUS_3              12               114
D4V7, multiclass
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7               329
  CLUS_2              17               188
  CLUS_3               0               287
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1               200
  CLUS_2               5               424
  CLUS_3              14               235
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              13               191
  CLUS_2               6               610
  CLUS_3               1                58

Clustering(5) Variable = 3p gain mutation analysis
D5V1, multiclass
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               6               134
  CLUS_2              11               114
  CLUS_3              24               224
D5V3, multiclass
D5V4, multiclass
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              15               132
  CLUS_2              10               123
  CLUS_3               6               111
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              15               146
  CLUS_2               4               106
  CLUS_3              12               114
D5V7, multiclass
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              29               307
  CLUS_2              14               191
  CLUS_3               9               278
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5               196
  CLUS_2              29               400
  CLUS_3              18               231
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16               188
  CLUS_2              35               581
  CLUS_3               1                58

Clustering(6) Variable = 3q gain mutation analysis
D6V1, multiclass
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               9               131
  CLUS_2              24               101
  CLUS_3              30               218
D6V3, multiclass
D6V4, multiclass
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              29               118
  CLUS_2              12               121
  CLUS_3              11               106
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              19               142
  CLUS_2              10               100
  CLUS_3              23               103
D6V7, multiclass
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              42               294
  CLUS_2              37               168
  CLUS_3              15               272
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10               191
  CLUS_2              40               389
  CLUS_3              46               203
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              37               167
  CLUS_2              53               563
  CLUS_3               6                53

Clustering(7) Variable = 4p gain mutation analysis
D7V1, multiclass
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0               140
  CLUS_2               0               125
  CLUS_3              17               231
D7V3, multiclass
D7V4, multiclass
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2               145
  CLUS_2               9               124
  CLUS_3               3               114
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              10               151
  CLUS_2               3               107
  CLUS_3               1               125
D7V7, multiclass
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              23               313
  CLUS_2               3               202
  CLUS_3               3               284
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2               199
  CLUS_2              24               405
  CLUS_3               2               247
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3               201
  CLUS_2              23               593
  CLUS_3               2                57

Clustering(8) Variable = 4q gain mutation analysis
D8V1, multiclass
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0               140
  CLUS_2               0               125
  CLUS_3              17               231
D8V3, multiclass
D8V4, multiclass
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3               144
  CLUS_2              10               123
  CLUS_3               3               114
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              12               149
  CLUS_2               3               107
  CLUS_3               1               125
D8V7, multiclass
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              21               315
  CLUS_2               2               203
  CLUS_3               4               283
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3               198
  CLUS_2              21               408
  CLUS_3               2               247
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2               202
  CLUS_2              22               594
  CLUS_3               2                57

Clustering(9) Variable = 5p gain mutation analysis
D9V1, multiclass
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              24               116
  CLUS_2              29                96
  CLUS_3              54               194
D9V3, multiclass
D9V4, multiclass
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              31               116
  CLUS_2              33               100
  CLUS_3              23                94
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              39               122
  CLUS_2              25                85
  CLUS_3              23               103
D9V7, multiclass
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              68               268
  CLUS_2              46               159
  CLUS_3              46               241
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              25               176
  CLUS_2              81               348
  CLUS_3              57               192
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              40               164
  CLUS_2             115               501
  CLUS_3               8                51

Clustering(10) Variable = 5q gain mutation analysis
D10V1, multiclass
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              14               126
  CLUS_2               8               117
  CLUS_3              43               205
D10V3, multiclass
D10V4, multiclass
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              12               135
  CLUS_2              29               104
  CLUS_3              14               103
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              30               131
  CLUS_2              17                93
  CLUS_3               8               118
D10V7, multiclass
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              52               284
  CLUS_2              11               194
  CLUS_3              35               252
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              16               185
  CLUS_2              65               364
  CLUS_3              21               228
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8               196
  CLUS_2              88               528
  CLUS_3               6                53

Clustering(11) Variable = 6p gain mutation analysis
D11V1, multiclass
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               4               136
  CLUS_2              24               101
  CLUS_3              30               218
D11V3, multiclass
D11V4, multiclass
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              26               121
  CLUS_2              12               121
  CLUS_3               7               110
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              17               144
  CLUS_2               7               103
  CLUS_3              21               105
D11V7, multiclass
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              37               299
  CLUS_2              42               163
  CLUS_3              13               274
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7               194
  CLUS_2              31               398
  CLUS_3              56               193
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              46               158
  CLUS_2              42               574
  CLUS_3               6                53

Clustering(12) Variable = 6q gain mutation analysis
D12V1, multiclass
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3               137
  CLUS_2              15               110
  CLUS_3              19               229
D12V3, multiclass
D12V4, multiclass
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              20               127
  CLUS_2               7               126
  CLUS_3               2               115
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11               150
  CLUS_2               3               107
  CLUS_3              15               111
D12V7, multiclass
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              25               311
  CLUS_2              25               180
  CLUS_3               5               282
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5               196
  CLUS_2              17               412
  CLUS_3              32               217
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              27               177
  CLUS_2              21               595
  CLUS_3               6                53

Clustering(13) Variable = 7p gain mutation analysis
D13V1, multiclass
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              28               112
  CLUS_2              27                98
  CLUS_3              38               210
D13V3, multiclass
D13V4, multiclass
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              27               120
  CLUS_2              24               109
  CLUS_3              23                94
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              26               135
  CLUS_2              21                89
  CLUS_3              27                99
D13V7, multiclass
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              59               277
  CLUS_2              45               160
  CLUS_3              44               243
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              26               175
  CLUS_2              77               352
  CLUS_3              44               205
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              45               159
  CLUS_2              96               520
  CLUS_3               6                53

Clustering(14) Variable = 7q gain mutation analysis
D14V1, multiclass
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18               122
  CLUS_2              26                99
  CLUS_3              23               225
D14V3, multiclass
D14V4, multiclass
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              22               125
  CLUS_2              17               116
  CLUS_3              11               106
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18               143
  CLUS_2              11                99
  CLUS_3              21               105
D14V7, multiclass
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              34               302
  CLUS_2              42               163
  CLUS_3              31               256
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              19               182
  CLUS_2              52               377
  CLUS_3              40               209
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              42               162
  CLUS_2              66               550
  CLUS_3               3                56

Clustering(15) Variable = 8p gain mutation analysis
D15V1, multiclass
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              20               120
  CLUS_2              25               100
  CLUS_3              59               189
D15V3, multiclass
D15V4, multiclass
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              24               123
  CLUS_2              33               100
  CLUS_3              22                95
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              37               124
  CLUS_2              19                91
  CLUS_3              23               103
D15V7, multiclass
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              84               252
  CLUS_2              38               167
  CLUS_3              39               248
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              24               177
  CLUS_2              86               343
  CLUS_3              60               189
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              40               164
  CLUS_2             118               498
  CLUS_3              12                47

Clustering(16) Variable = 8q gain mutation analysis
D16V1, multiclass
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              45                95
  CLUS_2              63                62
  CLUS_3             130               118
D16V3, multiclass
D16V4, multiclass
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              72                75
  CLUS_2              58                75
  CLUS_3              54                63
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              76                85
  CLUS_2              46                64
  CLUS_3              62                64
D16V7, multiclass
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             170               166
  CLUS_2             101               104
  CLUS_3              89               198
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              49               152
  CLUS_2             180               249
  CLUS_3             141               108
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             104               100
  CLUS_2             236               380
  CLUS_3              30                29

Clustering(17) Variable = 9p gain mutation analysis
D17V1, multiclass
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4               136
  CLUS_2              27                98
  CLUS_3              10               238
D17V3, multiclass
D17V4, multiclass
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               126
  CLUS_2               6               127
  CLUS_3               7               110
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               5               156
  CLUS_2               7               103
  CLUS_3              22               104
D17V7, multiclass
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              15               321
  CLUS_2              37               168
  CLUS_3              10               277
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               7               194
  CLUS_2              21               408
  CLUS_3              37               212
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              34               170
  CLUS_2              27               589
  CLUS_3               4                55

Clustering(18) Variable = 9q gain mutation analysis
D18V1, multiclass
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5               135
  CLUS_2              13               112
  CLUS_3              15               233
D18V3, multiclass
D18V4, multiclass
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              10               137
  CLUS_2               9               124
  CLUS_3               7               110
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               9               152
  CLUS_2               6               104
  CLUS_3              11               115
D18V7, multiclass
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              20               316
  CLUS_2              22               183
  CLUS_3              10               277
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6               195
  CLUS_2              27               402
  CLUS_3              21               228
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              17               187
  CLUS_2              33               583
  CLUS_3               4                55

Clustering(19) Variable = 10p gain mutation analysis
D19V1, multiclass
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               11                129
  CLUS_2               38                 87
  CLUS_3               23                225
D19V3, multiclass
D19V4, multiclass
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               36                111
  CLUS_2                8                125
  CLUS_3               12                105
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               11                150
  CLUS_2               10                100
  CLUS_3               35                 91
D19V7, multiclass
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               28                308
  CLUS_2               61                144
  CLUS_3               13                274
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               12                189
  CLUS_2               28                401
  CLUS_3               66                183
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               57                147
  CLUS_2               39                577
  CLUS_3               10                 49

Clustering(20) Variable = 10q gain mutation analysis
D20V1, multiclass
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                136
  CLUS_2               14                111
  CLUS_3               12                236
D20V3, multiclass
D20V4, multiclass
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               16                131
  CLUS_2                5                128
  CLUS_3                7                110
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                8                153
  CLUS_2                5                105
  CLUS_3               15                111
D20V7, multiclass
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               16                320
  CLUS_2               19                186
  CLUS_3                6                281
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                198
  CLUS_2               18                411
  CLUS_3               22                227
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               17                187
  CLUS_2               21                595
  CLUS_3                5                 54

Clustering(21) Variable = 11p gain mutation analysis
D21V1, multiclass
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               12                128
  CLUS_2                7                118
  CLUS_3               21                227
D21V3, multiclass
D21V4, multiclass
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                138
  CLUS_2               15                118
  CLUS_3               10                107
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               16                145
  CLUS_2               12                 98
  CLUS_3                6                120
D21V7, multiclass
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               30                306
  CLUS_2               15                190
  CLUS_3               18                269
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                192
  CLUS_2               34                395
  CLUS_3               19                230
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                189
  CLUS_2               40                576
  CLUS_3                7                 52

Clustering(22) Variable = 11q gain mutation analysis
D22V1, multiclass
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                131
  CLUS_2                6                119
  CLUS_3               17                231
D22V3, multiclass
D22V4, multiclass
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                138
  CLUS_2               10                123
  CLUS_3                8                109
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               11                150
  CLUS_2                9                101
  CLUS_3                7                119
D22V7, multiclass
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               19                317
  CLUS_2               14                191
  CLUS_3               11                276
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                195
  CLUS_2               20                409
  CLUS_3               17                232
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               15                189
  CLUS_2               24                592
  CLUS_3                4                 55

Clustering(23) Variable = 12p gain mutation analysis
D23V1, multiclass
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               10                130
  CLUS_2               28                 97
  CLUS_3               40                208
D23V3, multiclass
D23V4, multiclass
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               29                118
  CLUS_2               22                111
  CLUS_3               14                103
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               25                136
  CLUS_2               12                 98
  CLUS_3               28                 98
D23V7, multiclass
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               50                286
  CLUS_2               40                165
  CLUS_3               18                269
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                189
  CLUS_2               44                385
  CLUS_3               52                197
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               42                162
  CLUS_2               61                555
  CLUS_3                5                 54

Clustering(24) Variable = 12q gain mutation analysis
D24V1, multiclass
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               12                128
  CLUS_2                9                116
  CLUS_3               36                212
D24V3, multiclass
D24V4, multiclass
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               14                133
  CLUS_2               21                112
  CLUS_3               14                103
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               24                137
  CLUS_2               13                 97
  CLUS_3               12                114
D24V7, multiclass
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               47                289
  CLUS_2               16                189
  CLUS_3               19                268
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                8                193
  CLUS_2               49                380
  CLUS_3               26                223
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               15                189
  CLUS_2               64                552
  CLUS_3                4                 55

Clustering(25) Variable = 13q gain mutation analysis
D25V1, multiclass
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                134
  CLUS_2                9                116
  CLUS_3               16                232
D25V3, multiclass
D25V4, multiclass
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               14                133
  CLUS_2               10                123
  CLUS_3                3                114
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               12                149
  CLUS_2                4                106
  CLUS_3               11                115
D25V7, multiclass
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               21                315
  CLUS_2               14                191
  CLUS_3                7                280
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                197
  CLUS_2               20                409
  CLUS_3               21                228
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                188
  CLUS_2               23                593
  CLUS_3                6                 53

Clustering(26) Variable = 14q gain mutation analysis
D26V1, multiclass
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                7                133
  CLUS_2                7                118
  CLUS_3               32                216
D26V3, multiclass
D26V4, multiclass
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               13                134
  CLUS_2               12                121
  CLUS_3                9                108
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               18                143
  CLUS_2                8                102
  CLUS_3                8                118
D26V7, multiclass
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               42                294
  CLUS_2               11                194
  CLUS_3               20                267
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                195
  CLUS_2               48                381
  CLUS_3               21                228
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               11                193
  CLUS_2               57                559
  CLUS_3                7                 52

Clustering(27) Variable = 15q gain mutation analysis
D27V1, multiclass
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                134
  CLUS_2                9                116
  CLUS_3               11                237
D27V3, multiclass
D27V4, multiclass
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                8                139
  CLUS_2                8                125
  CLUS_3                5                112
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                154
  CLUS_2                5                105
  CLUS_3                9                117
D27V7, multiclass
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               15                321
  CLUS_2               14                191
  CLUS_3               13                274
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                194
  CLUS_2               25                404
  CLUS_3               13                236
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               16                188
  CLUS_2               27                589
  CLUS_3                2                 57

Clustering(28) Variable = 16p gain mutation analysis
D28V1, multiclass
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               38                102
  CLUS_2               22                103
  CLUS_3               96                152
D28V3, multiclass
D28V4, multiclass
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               30                117
  CLUS_2               58                 75
  CLUS_3               32                 85
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               60                101
  CLUS_2               40                 70
  CLUS_3               20                106
D28V7, multiclass
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1              122                214
  CLUS_2               38                167
  CLUS_3               81                206
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               46                155
  CLUS_2              147                282
  CLUS_3               52                197
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               40                164
  CLUS_2              187                429
  CLUS_3               18                 41

Clustering(29) Variable = 16q gain mutation analysis
D29V1, multiclass
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                134
  CLUS_2               12                113
  CLUS_3               18                230
D29V3, multiclass
D29V4, multiclass
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               14                133
  CLUS_2               10                123
  CLUS_3                4                113
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               12                149
  CLUS_2                6                104
  CLUS_3               10                116
D29V7, multiclass
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               25                311
  CLUS_2               19                186
  CLUS_3                9                278
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                195
  CLUS_2               22                407
  CLUS_3               24                225
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               20                184
  CLUS_2               26                590
  CLUS_3                6                 53

Clustering(30) Variable = 17p gain mutation analysis
D30V1, multiclass
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                131
  CLUS_2                4                121
  CLUS_3               16                232
D30V3, multiclass
D30V4, multiclass
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                5                142
  CLUS_2               11                122
  CLUS_3                9                108
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               12                149
  CLUS_2                9                101
  CLUS_3                4                122
D30V7, multiclass
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               22                314
  CLUS_2                9                196
  CLUS_3               13                274
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                192
  CLUS_2               27                402
  CLUS_3               10                239
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               10                194
  CLUS_2               35                581
  CLUS_3                1                 58

Clustering(31) Variable = 17q gain mutation analysis
D31V1, multiclass
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               16                124
  CLUS_2                7                118
  CLUS_3               41                207
D31V3, multiclass
D31V4, multiclass
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               14                133
  CLUS_2               19                114
  CLUS_3               13                104
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               24                137
  CLUS_2               16                 94
  CLUS_3                6                120
D31V7, multiclass
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               73                263
  CLUS_2               11                194
  CLUS_3               35                252
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               23                178
  CLUS_2               70                359
  CLUS_3               26                223
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               17                187
  CLUS_2               96                520
  CLUS_3                6                 53

Clustering(32) Variable = 18p gain mutation analysis
D32V1, multiclass
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                8                132
  CLUS_2               23                102
  CLUS_3               24                224
D32V3, multiclass
D32V4, multiclass
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               24                123
  CLUS_2               14                119
  CLUS_3                6                111
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               16                145
  CLUS_2                6                104
  CLUS_3               22                104
D32V7, multiclass
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               37                299
  CLUS_2               34                171
  CLUS_3               12                275
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                7                194
  CLUS_2               32                397
  CLUS_3               41                208
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               36                168
  CLUS_2               41                575
  CLUS_3                3                 56

Clustering(33) Variable = 18q gain mutation analysis
D33V1, multiclass
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                7                133
  CLUS_2               18                107
  CLUS_3               26                222
D33V3, multiclass
D33V4, multiclass
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               20                127
  CLUS_2               13                120
  CLUS_3                9                108
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               15                146
  CLUS_2                9                101
  CLUS_3               18                108
D33V7, multiclass
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               36                300
  CLUS_2               24                181
  CLUS_3               12                275
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                195
  CLUS_2               32                397
  CLUS_3               33                216
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               27                177
  CLUS_2               42                574
  CLUS_3                2                 57

Clustering(34) Variable = 19p gain mutation analysis
D34V1, multiclass
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                7                133
  CLUS_2               18                107
  CLUS_3               22                226
D34V3, multiclass
D34V4, multiclass
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               21                126
  CLUS_2                8                125
  CLUS_3                8                109
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               14                147
  CLUS_2                6                104
  CLUS_3               17                109
D34V7, multiclass
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               23                313
  CLUS_2               29                176
  CLUS_3               14                273
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                9                192
  CLUS_2               28                401
  CLUS_3               29                220
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               26                178
  CLUS_2               33                583
  CLUS_3                7                 52

Clustering(35) Variable = 19q gain mutation analysis
D35V1, multiclass
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                132
  CLUS_2               19                106
  CLUS_3               27                221
D35V3, multiclass
D35V4, multiclass
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               20                127
  CLUS_2                9                124
  CLUS_3               10                107
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               14                147
  CLUS_2                8                102
  CLUS_3               17                109
D35V7, multiclass
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               30                306
  CLUS_2               33                172
  CLUS_3               19                268
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               14                187
  CLUS_2               36                393
  CLUS_3               34                215
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               29                175
  CLUS_2               47                569
  CLUS_3                8                 51

Clustering(36) Variable = 20p gain mutation analysis
D36V1, multiclass
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               30                110
  CLUS_2               37                 88
  CLUS_3               85                163
D36V3, multiclass
D36V4, multiclass
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               58                 89
  CLUS_2               35                 98
  CLUS_3               30                 87
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               53                108
  CLUS_2               26                 84
  CLUS_3               44                 82
D36V7, multiclass
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1              116                220
  CLUS_2               54                151
  CLUS_3               60                227
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               27                174
  CLUS_2              122                307
  CLUS_3               83                166
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               53                151
  CLUS_2              158                458
  CLUS_3               21                 38

Clustering(37) Variable = 20q gain mutation analysis
D37V1, multiclass
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               35                105
  CLUS_2               37                 88
  CLUS_3               98                150
D37V3, multiclass
D37V4, multiclass
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               59                 88
  CLUS_2               41                 92
  CLUS_3               37                 80
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               58                103
  CLUS_2               35                 75
  CLUS_3               44                 82
D37V7, multiclass
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              140                196
  CLUS_2               57                148
  CLUS_3               68                219
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               32                169
  CLUS_2              145                284
  CLUS_3               93                156
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               60                144
  CLUS_2              185                431
  CLUS_3               25                 34

Clustering(38) Variable = 21q gain mutation analysis
D38V1, multiclass
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                133
  CLUS_2               27                 98
  CLUS_3               29                219
D38V3, multiclass
D38V4, multiclass
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               27                120
  CLUS_2               13                120
  CLUS_3               12                105
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                146
  CLUS_2               10                100
  CLUS_3               27                 99
D38V7, multiclass
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               39                297
  CLUS_2               48                157
  CLUS_3                9                278
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                186
  CLUS_2               34                395
  CLUS_3               49                200
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               42                162
  CLUS_2               50                566
  CLUS_3                6                 53

Clustering(39) Variable = 22q gain mutation analysis
D39V1, multiclass
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                139
  CLUS_2               11                114
  CLUS_3               12                236
D39V3, multiclass
D39V4, multiclass
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               14                133
  CLUS_2                5                128
  CLUS_3                4                113
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                9                152
  CLUS_2                3                107
  CLUS_3               11                115
D39V7, multiclass
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               12                324
  CLUS_2               23                182
  CLUS_3                3                284
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                198
  CLUS_2               16                413
  CLUS_3               23                226
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               23                181
  CLUS_2               16                600
  CLUS_3                3                 56

Clustering(40) Variable = Xq gain mutation analysis
D40V1, multiclass
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1               139
  CLUS_2              11               114
  CLUS_3               3               245
D40V3, multiclass
D40V4, multiclass
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8               139
  CLUS_2               1               132
  CLUS_3               3               114
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2               159
  CLUS_2               1               109
  CLUS_3               9               117
D40V7, multiclass
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4               332
  CLUS_2              14               191
  CLUS_3               1               286
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0               201
  CLUS_2               4               425
  CLUS_3              15               234
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              13               191
  CLUS_2               6               610
  CLUS_3               0                59

Clustering(41) Variable = 1p loss mutation analysis
D41V1, multiclass
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7               133
  CLUS_2               4               121
  CLUS_3              58               190
D41V3, multiclass
D41V4, multiclass
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              17               130
  CLUS_2              20               113
  CLUS_3              14               103
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              26               135
  CLUS_2              14                96
  CLUS_3              11               115
D41V7, multiclass
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              88               248
  CLUS_2               8               197
  CLUS_3              15               272
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              14               187
  CLUS_2              76               353
  CLUS_3              29               220
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13               191
  CLUS_2              95               521
  CLUS_3              11                48

Clustering(42) Variable = 1q loss mutation analysis
D42V1, multiclass
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0               140
  CLUS_2               3               122
  CLUS_3              10               238
D42V3, multiclass
D42V4, multiclass
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6               141
  CLUS_2               4               129
  CLUS_3               1               116
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6               155
  CLUS_2               2               108
  CLUS_3               3               123
D42V7, multiclass
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              17               319
  CLUS_2               3               202
  CLUS_3               1               286
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1               200
  CLUS_2              12               417
  CLUS_3               7               242
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7               197
  CLUS_2              13               603
  CLUS_3               0                59

Clustering(43) Variable = 2p loss mutation analysis
D43V1, multiclass
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6               134
  CLUS_2               3               122
  CLUS_3              36               212
D43V3, multiclass
D43V4, multiclass
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8               139
  CLUS_2              18               115
  CLUS_3               7               110
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              22               139
  CLUS_2               7               103
  CLUS_3               4               122
D43V7, multiclass
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              51               285
  CLUS_2               5               200
  CLUS_3              14               273
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               196
  CLUS_2              53               376
  CLUS_3              12               237
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6               198
  CLUS_2              60               556
  CLUS_3               4                55

Clustering(44) Variable = 2q loss mutation analysis
D44V1, multiclass
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6               134
  CLUS_2               9               116
  CLUS_3              40               208
D44V3, multiclass
D44V4, multiclass
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              16               131
  CLUS_2              18               115
  CLUS_3               6               111
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              24               137
  CLUS_2               6               104
  CLUS_3              10               116
D44V7, multiclass
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              55               281
  CLUS_2              15               190
  CLUS_3              15               272
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5               196
  CLUS_2              58               371
  CLUS_3              23               226
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              15               189
  CLUS_2              65               551
  CLUS_3               6                53

Clustering(45) Variable = 3p loss mutation analysis
D45V1, multiclass
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               8               132
  CLUS_2              24               101
  CLUS_3              20               228
D45V3, multiclass
D45V4, multiclass
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              27               120
  CLUS_2              12               121
  CLUS_3               6               111
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14               147
  CLUS_2               4               106
  CLUS_3              27                99
D45V7, multiclass
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              31               305
  CLUS_2              36               169
  CLUS_3              17               270
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9               192
  CLUS_2              31               398
  CLUS_3              48               201
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              33               171
  CLUS_2              44               572
  CLUS_3              11                48

Clustering(46) Variable = 3q loss mutation analysis
D46V1, multiclass
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3               137
  CLUS_2              14               111
  CLUS_3              11               237
D46V3, multiclass
D46V4, multiclass
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13               134
  CLUS_2               7               126
  CLUS_3               4               113
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               154
  CLUS_2               4               106
  CLUS_3              13               113
D46V7, multiclass
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              19               317
  CLUS_2              16               189
  CLUS_3               6               281
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3               198
  CLUS_2              18               411
  CLUS_3              21               228
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13               191
  CLUS_2              24               592
  CLUS_3               5                54

Clustering(47) Variable = 4p loss mutation analysis
D47V1, multiclass
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               9               131
  CLUS_2              55                70
  CLUS_3              53               195
D47V3, multiclass
D47V4, multiclass
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              52                95
  CLUS_2              25               108
  CLUS_3              17               100
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              30               131
  CLUS_2              15                95
  CLUS_3              49                77
D47V7, multiclass
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              70               266
  CLUS_2              85               120
  CLUS_3              20               267
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              16               185
  CLUS_2              70               359
  CLUS_3              93               156
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              73               131
  CLUS_2              87               529
  CLUS_3              19                40

Clustering(48) Variable = 4q loss mutation analysis
D48V1, multiclass
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               8               132
  CLUS_2              42                83
  CLUS_3              47               201
D48V3, multiclass
D48V4, multiclass
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              40               107
  CLUS_2              21               112
  CLUS_3              17               100
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              26               135
  CLUS_2              14                96
  CLUS_3              38                88
D48V7, multiclass
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              64               272
  CLUS_2              68               137
  CLUS_3              15               272
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              15               186
  CLUS_2              64               365
  CLUS_3              69               180
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              57               147
  CLUS_2              74               542
  CLUS_3              17                42

Clustering(49) Variable = 5p loss mutation analysis
D49V1, multiclass
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3               137
  CLUS_2              24               101
  CLUS_3              17               231
D49V3, multiclass
D49V4, multiclass
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              27               120
  CLUS_2               5               128
  CLUS_3               6               111
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               7               154
  CLUS_2               5               105
  CLUS_3              26               100
D49V7, multiclass
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              27               309
  CLUS_2              35               170
  CLUS_3               4               283
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4               197
  CLUS_2              16               413
  CLUS_3              51               198
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              40               164
  CLUS_2              22               594
  CLUS_3               9                50

Clustering(50) Variable = 5q loss mutation analysis
D50V1, multiclass
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               5               135
  CLUS_2              47                78
  CLUS_3              24               224
D50V3, multiclass
D50V4, multiclass
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              46               101
  CLUS_2               6               127
  CLUS_3              13               104
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              12               149
  CLUS_2               8               102
  CLUS_3              45                81
D50V7, multiclass
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              32               304
  CLUS_2              75               130
  CLUS_3              10               277
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6               195
  CLUS_2              27               402
  CLUS_3              87               162
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              79               125
  CLUS_2              29               587
  CLUS_3              12                47

Clustering(51) Variable = 6p loss mutation analysis
D51V1, multiclass
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              21               119
  CLUS_2               4               121
  CLUS_3              44               204
D51V3, multiclass
D51V4, multiclass
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10               137
  CLUS_2              20               113
  CLUS_3              21                96
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              28               133
  CLUS_2              16                94
  CLUS_3               7               119
D51V7, multiclass
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              61               275
  CLUS_2              10               195
  CLUS_3              33               254
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12               189
  CLUS_2              72               357
  CLUS_3              22               227
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12               192
  CLUS_2              85               531
  CLUS_3               9                50

Clustering(52) Variable = 6q loss mutation analysis
D52V1, multiclass
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              32               108
  CLUS_2               6               119
  CLUS_3              62               186
D52V3, multiclass
D52V4, multiclass
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              14               133
  CLUS_2              33               100
  CLUS_3              29                88
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              35               126
  CLUS_2              28                82
  CLUS_3              13               113
D52V7, multiclass
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              88               248
  CLUS_2              15               190
  CLUS_3              56               231
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              30               171
  CLUS_2             105               324
  CLUS_3              31               218
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16               188
  CLUS_2             138               478
  CLUS_3              12                47

Clustering(53) Variable = 7p loss mutation analysis
D53V1, multiclass
D53V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2               138
  CLUS_2              10               115
  CLUS_3              16               232
D53V3, multiclass
D53V4, multiclass
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9               138
  CLUS_2               7               126
  CLUS_3               3               114
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               8               153
  CLUS_2               3               107
  CLUS_3               8               118
D53V7, multiclass
D53V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              21               315
  CLUS_2              20               185
  CLUS_3               6               281
D53V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               4               197
  CLUS_2              22               407
  CLUS_3              21               228
D53V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              17               187
  CLUS_2              24               592
  CLUS_3               6                53

Clustering(54) Variable = 7q loss mutation analysis
D54V1, multiclass
D54V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               7               133
  CLUS_2               8               117
  CLUS_3              27               221
D54V3, multiclass
D54V4, multiclass
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              11               136
  CLUS_2              13               120
  CLUS_3               5               112
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              14               147
  CLUS_2               5               105
  CLUS_3              10               116
D54V7, multiclass
D54V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              37               299
  CLUS_2              14               191
  CLUS_3              12               275
D54V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6               195
  CLUS_2              32               397
  CLUS_3              23               226
D54V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              15               189
  CLUS_2              39               577
  CLUS_3               7                52

Clustering(55) Variable = 8p loss mutation analysis
D55V1, multiclass
D55V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              35               105
  CLUS_2              36                89
  CLUS_3              84               164
D55V3, multiclass
D55V4, multiclass
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              52                95
  CLUS_2              43                90
  CLUS_3              35                82
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              54               107
  CLUS_2              34                76
  CLUS_3              42                84
D55V7, multiclass
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1             119               217
  CLUS_2              66               139
  CLUS_3              67               220
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              40               161
  CLUS_2             133               296
  CLUS_3              89               160
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              65               139
  CLUS_2             171               445
  CLUS_3              26                33

Clustering(56) Variable = 8q loss mutation analysis
D56V1, multiclass
D56V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               7               133
  CLUS_2               5               120
  CLUS_3              17               231
D56V3, multiclass
D56V4, multiclass
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               9               138
  CLUS_2               9               124
  CLUS_3               5               112
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12               149
  CLUS_2               5               105
  CLUS_3               6               120
D56V7, multiclass
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              20               316
  CLUS_2              13               192
  CLUS_3              11               276
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4               197
  CLUS_2              26               403
  CLUS_3              13               236
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              10               194
  CLUS_2              30               586
  CLUS_3               3                56

Clustering(57) Variable = 9p loss mutation analysis
D57V1, multiclass
D57V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              19               121
  CLUS_2              25               100
  CLUS_3              72               176
D57V3, multiclass
D57V4, multiclass
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              45               102
  CLUS_2              25               108
  CLUS_3              23                94
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              40               121
  CLUS_2              24                86
  CLUS_3              29                97
D57V7, multiclass
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              95               241
  CLUS_2              48               157
  CLUS_3              36               251
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              18               183
  CLUS_2              94               335
  CLUS_3              70               179
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              50               154
  CLUS_2             112               504
  CLUS_3              20                39

Clustering(58) Variable = 9q loss mutation analysis
D58V1, multiclass
D58V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11               129
  CLUS_2              23               102
  CLUS_3              56               192
D58V3, multiclass
D58V4, multiclass
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              36               111
  CLUS_2              18               115
  CLUS_3              14               103
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              25               136
  CLUS_2              15                95
  CLUS_3              28                98
D58V7, multiclass
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              70               266
  CLUS_2              41               164
  CLUS_3              23               264
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               8               193
  CLUS_2              65               364
  CLUS_3              65               184
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              51               153
  CLUS_2              76               540
  CLUS_3              11                48

Clustering(59) Variable = 10p loss mutation analysis
D59V1, multiclass
D59V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                134
  CLUS_2               10                115
  CLUS_3               33                215
D59V3, multiclass
D59V4, multiclass
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               15                132
  CLUS_2               14                119
  CLUS_3                9                108
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                142
  CLUS_2                8                102
  CLUS_3               11                115
D59V7, multiclass
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               38                298
  CLUS_2               19                186
  CLUS_3               16                271
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                7                194
  CLUS_2               42                387
  CLUS_3               24                225
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               14                190
  CLUS_2               51                565
  CLUS_3                8                 51

Clustering(60) Variable = 10q loss mutation analysis
D60V1, multiclass
D60V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                133
  CLUS_2               20                105
  CLUS_3               41                207
D60V3, multiclass
D60V4, multiclass
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               31                116
  CLUS_2               15                118
  CLUS_3                9                108
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               25                136
  CLUS_2                9                101
  CLUS_3               21                105
D60V7, multiclass
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               52                284
  CLUS_2               33                172
  CLUS_3               21                266
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               14                187
  CLUS_2               49                380
  CLUS_3               43                206
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               30                174
  CLUS_2               63                553
  CLUS_3               13                 46

Clustering(61) Variable = 11p loss mutation analysis
D61V1, multiclass
D61V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               17                123
  CLUS_2               24                101
  CLUS_3               48                200
D61V3, multiclass
D61V4, multiclass
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               33                114
  CLUS_2               20                113
  CLUS_3               15                102
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               22                139
  CLUS_2               14                 96
  CLUS_3               32                 94
D61V7, multiclass
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               66                270
  CLUS_2               40                165
  CLUS_3               29                258
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               16                185
  CLUS_2               71                358
  CLUS_3               54                195
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               39                165
  CLUS_2               93                523
  CLUS_3                9                 50

Clustering(62) Variable = 11q loss mutation analysis
D62V1, multiclass
D62V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               36                104
  CLUS_2               19                106
  CLUS_3               85                163
D62V3, multiclass
D62V4, multiclass
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               31                116
  CLUS_2               40                 93
  CLUS_3               32                 85
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               43                118
  CLUS_2               34                 76
  CLUS_3               26                100
D62V7, multiclass
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1              116                220
  CLUS_2               30                175
  CLUS_3               70                217
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               38                163
  CLUS_2              129                300
  CLUS_3               56                193
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               34                170
  CLUS_2              172                444
  CLUS_3               17                 42

Clustering(63) Variable = 12p loss mutation analysis
D63V1, multiclass
D63V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                134
  CLUS_2               14                111
  CLUS_3               21                227
D63V3, multiclass
D63V4, multiclass
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               18                129
  CLUS_2                9                124
  CLUS_3                7                110
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                150
  CLUS_2                8                102
  CLUS_3               15                111
D63V7, multiclass
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               23                313
  CLUS_2               28                177
  CLUS_3               11                276
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                193
  CLUS_2               28                401
  CLUS_3               29                220
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               22                182
  CLUS_2               36                580
  CLUS_3                7                 52

Clustering(64) Variable = 12q loss mutation analysis
D64V1, multiclass
D64V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                137
  CLUS_2               18                107
  CLUS_3               12                236
D64V3, multiclass
D64V4, multiclass
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               18                129
  CLUS_2                6                127
  CLUS_3                3                114
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                155
  CLUS_2                4                106
  CLUS_3               17                109
D64V7, multiclass
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               13                323
  CLUS_2               28                177
  CLUS_3                5                282
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                195
  CLUS_2               14                415
  CLUS_3               30                219
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               26                178
  CLUS_2               21                595
  CLUS_3                3                 56

Clustering(65) Variable = 13q loss mutation analysis
D65V1, multiclass
D65V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               26                114
  CLUS_2               43                 82
  CLUS_3               90                158
D65V3, multiclass
D65V4, multiclass
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               46                101
  CLUS_2               45                 88
  CLUS_3               34                 83
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               55                106
  CLUS_2               30                 80
  CLUS_3               40                 86
D65V7, multiclass
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1              131                205
  CLUS_2               67                138
  CLUS_3               55                232
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               26                175
  CLUS_2              144                285
  CLUS_3               91                158
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               61                143
  CLUS_2              176                440
  CLUS_3               24                 35

Clustering(66) Variable = 14q loss mutation analysis
D66V1, multiclass
D66V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                133
  CLUS_2               38                 87
  CLUS_3               35                213
D66V3, multiclass
D66V4, multiclass
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               39                108
  CLUS_2               12                121
  CLUS_3               14                103
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               18                143
  CLUS_2               11                 99
  CLUS_3               36                 90
D66V7, multiclass
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               47                289
  CLUS_2               60                145
  CLUS_3               17                270
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               13                188
  CLUS_2               42                387
  CLUS_3               72                177
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               65                139
  CLUS_2               54                562
  CLUS_3                8                 51

Clustering(67) Variable = 15q loss mutation analysis
D67V1, multiclass
D67V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               13                127
  CLUS_2               37                 88
  CLUS_3               49                199
D67V3, multiclass
D67V4, multiclass
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               38                109
  CLUS_2               24                109
  CLUS_3               19                 98
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               27                134
  CLUS_2               16                 94
  CLUS_3               38                 88
D67V7, multiclass
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               69                267
  CLUS_2               53                152
  CLUS_3               27                260
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               16                185
  CLUS_2               71                358
  CLUS_3               70                179
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               51                153
  CLUS_2               84                532
  CLUS_3               22                 37

Clustering(68) Variable = 16p loss mutation analysis
D68V1, multiclass
D68V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                136
  CLUS_2               14                111
  CLUS_3               21                227
D68V3, multiclass
D68V4, multiclass
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               17                130
  CLUS_2                8                125
  CLUS_3                7                110
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               12                149
  CLUS_2                6                104
  CLUS_3               14                112
D68V7, multiclass
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               25                311
  CLUS_2               20                185
  CLUS_3                6                281
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                197
  CLUS_2               22                407
  CLUS_3               26                223
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               22                182
  CLUS_2               24                592
  CLUS_3                6                 53

Clustering(69) Variable = 16q loss mutation analysis
D69V1, multiclass
D69V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               76                 64
  CLUS_2               21                104
  CLUS_3              136                112
D69V3, multiclass
D69V4, multiclass
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               40                107
  CLUS_2               73                 60
  CLUS_3               54                 63
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               90                 71
  CLUS_2               52                 58
  CLUS_3               25                101
D69V7, multiclass
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              170                166
  CLUS_2               33                172
  CLUS_3              155                132
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               77                124
  CLUS_2              242                187
  CLUS_3               58                191
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               37                167
  CLUS_2              321                295
  CLUS_3               19                 40

Clustering(70) Variable = 17p loss mutation analysis
D70V1, multiclass
D70V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               56                 84
  CLUS_2               56                 69
  CLUS_3              108                140
D70V3, multiclass
D70V4, multiclass
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               78                 69
  CLUS_2               46                 87
  CLUS_3               40                 77
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               66                 95
  CLUS_2               38                 72
  CLUS_3               60                 66
D70V7, multiclass
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              151                185
  CLUS_2               89                116
  CLUS_3              104                183
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               57                144
  CLUS_2              181                248
  CLUS_3              124                125
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               84                120
  CLUS_2              244                372
  CLUS_3               34                 25

Clustering(71) Variable = 17q loss mutation analysis
D71V1, multiclass
D71V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               12                128
  CLUS_2               41                 84
  CLUS_3               39                209
D71V3, multiclass
D71V4, multiclass
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               51                 96
  CLUS_2                7                126
  CLUS_3               19                 98
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               16                145
  CLUS_2               17                 93
  CLUS_3               44                 82
D71V7, multiclass
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               49                287
  CLUS_2               60                145
  CLUS_3               25                262
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               18                183
  CLUS_2               50                379
  CLUS_3               70                179
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               54                150
  CLUS_2               71                545
  CLUS_3               13                 46

Clustering(72) Variable = 18p loss mutation analysis
D72V1, multiclass
D72V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               26                114
  CLUS_2               25                100
  CLUS_3               56                192
D72V3, multiclass
D72V4, multiclass
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               32                115
  CLUS_2               26                107
  CLUS_3               24                 93
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               33                128
  CLUS_2               22                 88
  CLUS_3               27                 99
D72V7, multiclass
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               79                257
  CLUS_2               40                165
  CLUS_3               41                246
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               27                174
  CLUS_2               92                337
  CLUS_3               52                197
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               29                175
  CLUS_2              125                491
  CLUS_3               17                 42

Clustering(73) Variable = 18q loss mutation analysis
D73V1, multiclass
D73V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               25                115
  CLUS_2               24                101
  CLUS_3               54                194
D73V3, multiclass
D73V4, multiclass
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               32                115
  CLUS_2               26                107
  CLUS_3               19                 98
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               33                128
  CLUS_2               19                 91
  CLUS_3               25                101
D73V7, multiclass
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               80                256
  CLUS_2               39                166
  CLUS_3               41                246
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               28                173
  CLUS_2               91                338
  CLUS_3               54                195
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               37                167
  CLUS_2              119                497
  CLUS_3               17                 42

Clustering(74) Variable = 19p loss mutation analysis
D74V1, multiclass
D74V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                137
  CLUS_2                8                117
  CLUS_3               32                216
D74V3, multiclass
D74V4, multiclass
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               17                130
  CLUS_2               12                121
  CLUS_3                8                109
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               12                149
  CLUS_2                7                103
  CLUS_3               18                108
D74V7, multiclass
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               42                294
  CLUS_2               18                187
  CLUS_3                5                282
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                197
  CLUS_2               35                394
  CLUS_3               26                223
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               14                190
  CLUS_2               43                573
  CLUS_3                8                 51

Clustering(75) Variable = 19q loss mutation analysis
D75V1, multiclass
D75V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                138
  CLUS_2                7                118
  CLUS_3               26                222
D75V3, multiclass
D75V4, multiclass
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               15                132
  CLUS_2                9                124
  CLUS_3                4                113
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               10                151
  CLUS_2                4                106
  CLUS_3               14                112
D75V7, multiclass
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               35                301
  CLUS_2               14                191
  CLUS_3                2                285
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                197
  CLUS_2               27                402
  CLUS_3               20                229
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               10                194
  CLUS_2               35                581
  CLUS_3                6                 53

Clustering(76) Variable = 20p loss mutation analysis
D76V1, multiclass
D76V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                137
  CLUS_2               11                114
  CLUS_3               16                232
D76V3, multiclass
D76V4, multiclass
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                137
  CLUS_2                5                128
  CLUS_3                9                108
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                154
  CLUS_2                7                103
  CLUS_3               10                116
D76V7, multiclass
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               21                315
  CLUS_2               21                184
  CLUS_3                5                282
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                196
  CLUS_2               16                413
  CLUS_3               29                220
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               22                182
  CLUS_2               27                589
  CLUS_3                1                 58

Clustering(77) Variable = 20q loss mutation analysis
D77V1, multiclass
D77V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                139
  CLUS_2                6                119
  CLUS_3               10                238
D77V3, multiclass
D77V4, multiclass
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                140
  CLUS_2                3                130
  CLUS_3                3                114
D77V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                156
  CLUS_2                1                109
  CLUS_3                7                119
D77V7, multiclass
D77V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                9                327
  CLUS_2               14                191
  CLUS_3                1                286
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                199
  CLUS_2                7                422
  CLUS_3               19                230
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               17                187
  CLUS_2                9                607
  CLUS_3                2                 57

Clustering(78) Variable = 21q loss mutation analysis
D78V1, multiclass
D78V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               13                127
  CLUS_2                8                117
  CLUS_3               29                219
D78V3, multiclass
D78V4, multiclass
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               15                132
  CLUS_2               13                120
  CLUS_3               12                105
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               18                143
  CLUS_2               11                 99
  CLUS_3               11                115
D78V7, multiclass
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               39                297
  CLUS_2               19                186
  CLUS_3               23                264
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                191
  CLUS_2               45                384
  CLUS_3               28                221
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               19                185
  CLUS_2               54                562
  CLUS_3               10                 49

Clustering(79) Variable = 22q loss mutation analysis
D79V1, multiclass
D79V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               52                 88
  CLUS_2               19                106
  CLUS_3              107                141
D79V3, multiclass
D79V4, multiclass
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               37                110
  CLUS_2               63                 70
  CLUS_3               39                 78
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               74                 87
  CLUS_2               40                 70
  CLUS_3               25                101
D79V7, multiclass
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              148                188
  CLUS_2               31                174
  CLUS_3               99                188
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               45                156
  CLUS_2              185                244
  CLUS_3               63                186
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               39                165
  CLUS_2              238                378
  CLUS_3               16                 43

Clustering(80) Variable = Xq loss mutation analysis
D80V1, multiclass
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1               139
  CLUS_2               7               118
  CLUS_3               7               241
D80V3, multiclass
D80V4, multiclass
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              10               137
  CLUS_2               2               131
  CLUS_3               1               116
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6               155
  CLUS_2               1               109
  CLUS_3               6               120
D80V7, multiclass
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              15               321
  CLUS_2              14               191
  CLUS_3               2               285
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0               201
  CLUS_2              12               417
  CLUS_3              18               231
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12               192
  CLUS_2              14               602
  CLUS_3               4                55
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
