GDAC_MergedClusteringPipeline Execution Log 2:20 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2861014/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2902486/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile CESC-TP
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2900408/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2859748/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2860129/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2860130/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
Execution Times:
Submitted: 02:20:28 09-04-13
Completed:
Elapsed: 07 hrs 27 mins 10 secs

step 1. GDAC_mergedClustering [id: 374792] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2861014/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2902486/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
mergedfile CESC-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2900408/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2859748/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2860129/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2860130/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
Output Files:
 CESC-TP.mergedcluster.txt
 .lsf.out
 CESC-TP.transferedmergedcluster.txt
 stdout.txt
Execution Times:
Submitted: 02:20:28 09-04-13
Completed: 02:21:55 09-04-13
Elapsed: 00 hrs 01 mins 27 secs

step 2. GDAC_mergedReport [id: 374793]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster CESC-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 02:20:28 09-04-13
Completed: 09:47:37 09-04-13
Elapsed: 07 hrs 27 mins 08 secs