
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/375834/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/CESC-TP/2907374/1.GDAC_mergedClustering.Finished/CESC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=134, in cluster file=126, common to both=126
[1]  52 126
[1] "Amp Peak  1(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           67                            59 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           67                            59 
[1] "Amp Peak  2(1q44) mutation analysis"
[1] 3
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         68                          58 
  AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE 
                         68                          58 
[1] "Amp Peak  3(2p24.3) mutation analysis"
[1] 3
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           33                            93 
  AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE 
                           33                            93 
[1] "Amp Peak  4(2q32.3) mutation analysis"
[1] 3
  AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE 
                           20                           106 
  AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE 
                           20                           106 
[1] "Amp Peak  5(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           95                            31 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           95                            31 
[1] "Amp Peak  6(3q28) mutation analysis"
[1] 3
  AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE 
                         94                          32 
  AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE 
                         94                          32 
[1] "Amp Peak  7(4q12) mutation analysis"
[1] 3
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                         12                         114 
  AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE 
                         12                         114 
[1] "Amp Peak  8(6p21.33) mutation analysis"
[1] 3
  AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE 
                            35                             91 
  AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE 
                            35                             91 
[1] "Amp Peak  9(6q12) mutation analysis"
[1] 3
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         24                         102 
  AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE 
                         24                         102 
[1] "Amp Peak 10(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                            53                             73 
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                            53                             73 
[1] "Amp Peak 11(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            48                             78 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            48                             78 
[1] "Amp Peak 12(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           28                            98 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           28                            98 
[1] "Amp Peak 13(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            18                            108 
  AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE 
                            18                            108 
[1] "Amp Peak 14(11q22.1) mutation analysis"
[1] 3
  AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE 
                            27                             99 
  AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE 
                            27                             99 
[1] "Amp Peak 15(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                            27                             99 
  AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE 
                            27                             99 
[1] "Amp Peak 16(14q24.1) mutation analysis"
[1] 3
  AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE 
                            25                            101 
  AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE 
                            25                            101 
[1] "Amp Peak 17(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE 
                            30                             96 
  AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE 
                            30                             96 
[1] "Amp Peak 18(16p13.2) mutation analysis"
[1] 3
  AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE 
                            27                             99 
  AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE 
                            27                             99 
[1] "Amp Peak 19(16p13.13) mutation analysis"
[1] 3
  AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE 
                             30                              96 
  AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE 
                             30                              96 
[1] "Amp Peak 20(17q12) mutation analysis"
[1] 3
  AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE 
                          21                          105 
  AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE 
                          21                          105 
[1] "Amp Peak 21(17q25.1) mutation analysis"
[1] 3
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            34                             92 
  AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE 
                            34                             92 
[1] "Amp Peak 22(19q13.31) mutation analysis"
[1] 3
  AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE 
                             43                              83 
  AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE 
                             43                              83 
[1] "Amp Peak 23(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             61                              65 
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             61                              65 
[1] "Amp Peak 24(Xq28) mutation analysis"
[1] 3
  AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE 
                         36                          90 
  AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE 
                         36                          90 
[1] "Del Peak  1(1p36.23) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            20                            106 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            20                            106 
[1] "Del Peak  2(1p13.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                           12                           114 
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                           12                           114 
[1] "Del Peak  3(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           22                           104 
  DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE 
                           22                           104 
[1] "Del Peak  4(2q37.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                           51                            75 
  DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE 
                           51                            75 
[1] "Del Peak  5(3p11.1) mutation analysis"
[1] 3
  DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE 
                           51                            75 
  DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE 
                           51                            75 
[1] "Del Peak  6(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           39                            87 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           39                            87 
[1] "Del Peak  7(4q35.2) mutation analysis"
[1] 3
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                           47                            79 
  DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE 
                           47                            79 
[1] "Del Peak  8(5q14.3) mutation analysis"
[1] 3
  DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE 
                           36                            90 
  DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE 
                           36                            90 
[1] "Del Peak  9(6p24.3) mutation analysis"
[1] 3
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                           18                           108 
  DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE 
                           18                           108 
[1] "Del Peak 10(6p12.1) mutation analysis"
[1] 3
  DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE 
                           20                           106 
  DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE 
                           20                           106 
[1] "Del Peak 11(6q26) mutation analysis"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         48                          78 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                         48                          78 
[1] "Del Peak 12(7q34) mutation analysis"
[1] 3
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                         28                          98 
  DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE 
                         28                          98 
[1] "Del Peak 13(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             39                              87 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             39                              87 
[1] "Del Peak 14(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE 
                            38                             88 
  DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE 
                            38                             88 
[1] "Del Peak 15(11p15.1) mutation analysis"
[1] 3
  DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE 
                            40                             86 
  DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE 
                            40                             86 
[1] "Del Peak 16(11q25) mutation analysis"
[1] 3
  DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE 
                          74                           52 
  DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE 
                          74                           52 
[1] "Del Peak 17(13q13.3) mutation analysis"
[1] 3
  DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE 
                            52                             74 
  DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE 
                            52                             74 
[1] "Del Peak 18(14q32.31) mutation analysis"
[1] 3
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                             25                             101 
  DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE 
                             25                             101 
[1] "Del Peak 19(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            29                             97 
  DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE 
                            29                             97 
[1] "Del Peak 20(16q11.2) mutation analysis"
[1] 3
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                            25                            101 
  DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE 
                            25                            101 
[1] "Del Peak 21(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            28                             98 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            28                             98 
[1] "Del Peak 22(17p12) mutation analysis"
[1] 3
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          42                           84 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          42                           84 
[1] "Del Peak 23(17q25.3) mutation analysis"
[1] 3
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            22                            104 
  DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE 
                            22                            104 
[1] "Del Peak 24(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            39                             87 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            39                             87 
[1] "Del Peak 25(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE 
                            17                            109 
  DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE 
                            17                            109 
[1] "Del Peak 26(21q21.1) mutation analysis"
[1] 3
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                            27                             99 
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                            27                             99 
[1] "Del Peak 27(Xp11.3) mutation analysis"
[1] 3
  DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE 
                           37                            89 
  DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE 
                           37                            89 
[1] "Del Peak 28(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE 
                            27                             99 
  DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE 
                            27                             99 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 6 rows and 126 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 126 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          30                            12
  CLUS_2                          16                            16
  CLUS_3                          21                            31
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          23                            30
  CLUS_2                          27                            14
  CLUS_3                          17                            15
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          27                            23
  CLUS_2                          13                            17
  CLUS_3                          19                            12
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           7                             4
  CLUS_2                          32                            32
  CLUS_3                          20                            16
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          19                            22
  CLUS_2                          20                            17
  CLUS_3                          21                            15
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          27                            25
  CLUS_3                          15                            17

Clustering(2) Variable = Amp Peak  2(1q44) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        29                          13
  CLUS_2                        19                          13
  CLUS_3                        20                          32
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        27                          26
  CLUS_2                        24                          17
  CLUS_3                        17                          15
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        27                          23
  CLUS_2                        14                          16
  CLUS_3                        19                          12
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                         6                           5
  CLUS_2                        35                          29
  CLUS_3                        19                          17
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        22                          19
  CLUS_2                        16                          21
  CLUS_3                        23                          13
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q44) MUTATED AMP PEAK  2(1Q44) WILD-TYPE
  CLUS_1                        18                          12
  CLUS_2                        25                          27
  CLUS_3                        18                          14

Clustering(3) Variable = Amp Peak  3(2p24.3) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                          11                            21
  CLUS_3                           9                            43
D3V2, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          12                            41
  CLUS_2                          10                            31
  CLUS_3                          11                            21
D3V3, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                           8                            22
  CLUS_3                          13                            18
D3V4, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                          12                            52
  CLUS_3                          14                            22
D3V5, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           7                            30
  CLUS_3                          14                            22
D3V6, multiclass
        clus
vv       AMP PEAK  3(2P24.3) MUTATED AMP PEAK  3(2P24.3) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                           6                            46
  CLUS_3                          12                            20

Clustering(4) Variable = Amp Peak  4(2q32.3) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                          10                            22
  CLUS_3                           1                            51
D4V2, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           4                            49
  CLUS_2                           9                            32
  CLUS_3                           7                            25
D4V3, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           1                            49
  CLUS_2                           9                            21
  CLUS_3                           6                            25
D4V4, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                           4                            60
  CLUS_3                           8                            28
D4V5, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           4                            33
  CLUS_3                           6                            30
D4V6, multiclass
        clus
vv       AMP PEAK  4(2Q32.3) MUTATED AMP PEAK  4(2Q32.3) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           3                            49
  CLUS_3                           9                            23

Clustering(5) Variable = Amp Peak  5(3q26.2) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          42                             0
  CLUS_2                          20                            12
  CLUS_3                          33                            19
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          41                            12
  CLUS_2                          32                             9
  CLUS_3                          22                            10
D5V3, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          43                             7
  CLUS_2                          20                            10
  CLUS_3                          22                             9
D5V4, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          10                             1
  CLUS_2                          50                            14
  CLUS_3                          25                            11
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          31                            10
  CLUS_2                          30                             7
  CLUS_3                          28                             8
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE
  CLUS_1                          22                             8
  CLUS_2                          45                             7
  CLUS_3                          22                            10

Clustering(6) Variable = Amp Peak  6(3q28) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        42                           0
  CLUS_2                        19                          13
  CLUS_3                        33                          19
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        41                          12
  CLUS_2                        31                          10
  CLUS_3                        22                          10
D6V3, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        43                           7
  CLUS_2                        19                          11
  CLUS_3                        22                           9
D6V4, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        10                           1
  CLUS_2                        49                          15
  CLUS_3                        25                          11
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        31                          10
  CLUS_2                        30                           7
  CLUS_3                        27                           9
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q28) MUTATED AMP PEAK  6(3Q28) WILD-TYPE
  CLUS_1                        22                           8
  CLUS_2                        45                           7
  CLUS_3                        21                          11

Clustering(7) Variable = Amp Peak  7(4q12) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         5                          37
  CLUS_2                         4                          28
  CLUS_3                         3                          49
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         3                          50
  CLUS_2                         3                          38
  CLUS_3                         6                          26
D7V3, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         2                          48
  CLUS_2                         4                          26
  CLUS_3                         6                          25
D7V4, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         3                           8
  CLUS_2                         2                          62
  CLUS_3                         7                          29
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         2                          39
  CLUS_2                         4                          33
  CLUS_3                         6                          30
D7V6, multiclass
        clus
vv       AMP PEAK  7(4Q12) MUTATED AMP PEAK  7(4Q12) WILD-TYPE
  CLUS_1                         7                          23
  CLUS_2                         2                          50
  CLUS_3                         3                          29

Clustering(8) Variable = Amp Peak  8(6p21.33) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                           16                             16
  CLUS_3                            9                             43
D8V2, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                            8                             45
  CLUS_2                           18                             23
  CLUS_3                            9                             23
D8V3, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                            6                             44
  CLUS_2                           13                             17
  CLUS_3                           11                             20
D8V4, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                           12                             52
  CLUS_3                           13                             23
D8V5, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            8                             29
  CLUS_3                           14                             22
D8V6, multiclass
        clus
vv       AMP PEAK  8(6P21.33) MUTATED AMP PEAK  8(6P21.33) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                            8                             44
  CLUS_3                           12                             20

Clustering(9) Variable = Amp Peak  9(6q12) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         7                          35
  CLUS_2                         9                          23
  CLUS_3                         8                          44
D9V2, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         6                          47
  CLUS_2                        11                          30
  CLUS_3                         7                          25
D9V3, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         6                          44
  CLUS_2                         7                          23
  CLUS_3                         9                          22
D9V4, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         5                           6
  CLUS_2                         7                          57
  CLUS_3                        10                          26
D9V5, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         6                          35
  CLUS_2                         5                          32
  CLUS_3                        10                          26
D9V6, multiclass
        clus
vv       AMP PEAK  9(6Q12) MUTATED AMP PEAK  9(6Q12) WILD-TYPE
  CLUS_1                         8                          22
  CLUS_2                         6                          46
  CLUS_3                         7                          25

Clustering(10) Variable = Amp Peak 10(8q24.21) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           22                             10
  CLUS_3                           18                             34
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           24                             29
  CLUS_2                           16                             25
  CLUS_3                           13                             19
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           23                             27
  CLUS_2                           11                             19
  CLUS_3                           15                             16
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                           30                             34
  CLUS_3                           16                             20
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           19                             22
  CLUS_2                           10                             27
  CLUS_3                           18                             18
D10V6, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           15                             15
  CLUS_2                           19                             33
  CLUS_3                           13                             19

Clustering(11) Variable = Amp Peak 11(8q24.21) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                           20                             12
  CLUS_3                           14                             38
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           24                             29
  CLUS_2                           15                             26
  CLUS_3                            9                             23
D11V3, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           22                             28
  CLUS_2                           11                             19
  CLUS_3                           11                             20
D11V4, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                           29                             35
  CLUS_3                           12                             24
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           17                             24
  CLUS_2                           10                             27
  CLUS_3                           15                             21
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           11                             19
  CLUS_2                           18                             34
  CLUS_3                           13                             19

Clustering(12) Variable = Amp Peak 12(9p24.1) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           8                            34
  CLUS_2                          12                            20
  CLUS_3                           8                            44
D12V2, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          13                            40
  CLUS_2                          10                            31
  CLUS_3                           5                            27
D12V3, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          11                            39
  CLUS_2                           8                            22
  CLUS_3                           6                            25
D12V4, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           3                             8
  CLUS_2                          12                            52
  CLUS_3                          10                            26
D12V5, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                          13                            28
  CLUS_2                           6                            31
  CLUS_3                           7                            29
D12V6, multiclass
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          13                            39
  CLUS_3                           8                            24

Clustering(13) Variable = Amp Peak 13(11q13.3) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            5                             37
  CLUS_2                            9                             23
  CLUS_3                            4                             48
D13V2, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                            7                             34
  CLUS_3                            5                             27
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            3                             47
  CLUS_2                            9                             21
  CLUS_3                            4                             27
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            5                             59
  CLUS_3                           10                             26
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            2                             35
  CLUS_3                            5                             31
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q13.3) MUTATED AMP PEAK 13(11Q13.3) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            7                             45
  CLUS_3                            4                             28

Clustering(14) Variable = Amp Peak 14(11q22.1) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            4                             38
  CLUS_2                           16                             16
  CLUS_3                            7                             45
D14V2, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                           13                             28
  CLUS_3                            3                             29
D14V3, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            9                             41
  CLUS_2                           10                             20
  CLUS_3                            3                             28
D14V4, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                           14                             50
  CLUS_3                            8                             28
D14V5, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                           15                             26
  CLUS_2                            5                             32
  CLUS_3                            4                             32
D14V6, multiclass
        clus
vv       AMP PEAK 14(11Q22.1) MUTATED AMP PEAK 14(11Q22.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           15                             37
  CLUS_3                            6                             26

Clustering(15) Variable = Amp Peak 15(13q22.1) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            3                             39
  CLUS_2                           12                             20
  CLUS_3                           12                             40
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           12                             41
  CLUS_2                            6                             35
  CLUS_3                            9                             23
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            7                             43
  CLUS_2                            8                             22
  CLUS_3                            9                             22
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                           15                             49
  CLUS_3                            9                             27
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                            4                             33
  CLUS_3                           10                             26
D15V6, multiclass
        clus
vv       AMP PEAK 15(13Q22.1) MUTATED AMP PEAK 15(13Q22.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                            6                             46
  CLUS_3                           12                             20

Clustering(16) Variable = Amp Peak 16(14q24.1) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            5                             27
  CLUS_3                           10                             42
D16V2, multiclass
        clus
vv       AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                            9                             32
  CLUS_3                            7                             25
D16V3, multiclass
        clus
vv       AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE
  CLUS_1                            7                             43
  CLUS_2                            8                             22
  CLUS_3                            8                             23
D16V4, multiclass
        clus
vv       AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            9                             55
  CLUS_3                           11                             25
D16V5, multiclass
        clus
vv       AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                            7                             30
  CLUS_3                            6                             30
D16V6, multiclass
        clus
vv       AMP PEAK 16(14Q24.1) MUTATED AMP PEAK 16(14Q24.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           10                             42
  CLUS_3                            7                             25

Clustering(17) Variable = Amp Peak 17(15q26.3) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE
  CLUS_1                           17                             25
  CLUS_2                            3                             29
  CLUS_3                           10                             42
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                            7                             34
  CLUS_3                            8                             24
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                            4                             26
  CLUS_3                            8                             23
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                           15                             49
  CLUS_3                           10                             26
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                            9                             28
  CLUS_3                           10                             26
D17V6, multiclass
        clus
vv       AMP PEAK 17(15Q26.3) MUTATED AMP PEAK 17(15Q26.3) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           13                             39
  CLUS_3                            8                             24

Clustering(18) Variable = Amp Peak 18(16p13.2) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                            4                             28
  CLUS_3                            9                             43
D18V2, multiclass
        clus
vv       AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE
  CLUS_1                           14                             39
  CLUS_2                            5                             36
  CLUS_3                            8                             24
D18V3, multiclass
        clus
vv       AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                            5                             25
  CLUS_3                            7                             24
D18V4, multiclass
        clus
vv       AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                           12                             52
  CLUS_3                            8                             28
D18V5, multiclass
        clus
vv       AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            7                             30
  CLUS_3                            9                             27
D18V6, multiclass
        clus
vv       AMP PEAK 18(16P13.2) MUTATED AMP PEAK 18(16P13.2) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           10                             42
  CLUS_3                            8                             24

Clustering(19) Variable = Amp Peak 19(16p13.13) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE
  CLUS_1                            15                              27
  CLUS_2                             4                              28
  CLUS_3                            11                              41
D19V2, multiclass
        clus
vv       AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE
  CLUS_1                            13                              40
  CLUS_2                             6                              35
  CLUS_3                            11                              21
D19V3, multiclass
        clus
vv       AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE
  CLUS_1                            10                              40
  CLUS_2                             6                              24
  CLUS_3                             9                              22
D19V4, multiclass
        clus
vv       AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE
  CLUS_1                             4                               7
  CLUS_2                            11                              53
  CLUS_3                            10                              26
D19V5, multiclass
        clus
vv       AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE
  CLUS_1                             8                              33
  CLUS_2                            10                              27
  CLUS_3                            10                              26
D19V6, multiclass
        clus
vv       AMP PEAK 19(16P13.13) MUTATED AMP PEAK 19(16P13.13) WILD-TYPE
  CLUS_1                            10                              20
  CLUS_2                            11                              41
  CLUS_3                             7                              25

Clustering(20) Variable = Amp Peak 20(17q12) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE
  CLUS_1                          9                           33
  CLUS_2                          8                           24
  CLUS_3                          4                           48
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE
  CLUS_1                          7                           46
  CLUS_2                          4                           37
  CLUS_3                         10                           22
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE
  CLUS_1                          5                           45
  CLUS_2                          2                           28
  CLUS_3                         10                           21
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE
  CLUS_1                          2                            9
  CLUS_2                          6                           58
  CLUS_3                          9                           27
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          5                           32
  CLUS_3                         10                           26
D20V6, multiclass
        clus
vv       AMP PEAK 20(17Q12) MUTATED AMP PEAK 20(17Q12) WILD-TYPE
  CLUS_1                          9                           21
  CLUS_2                          5                           47
  CLUS_3                          5                           27

Clustering(21) Variable = Amp Peak 21(17q25.1) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           16                             26
  CLUS_2                           11                             21
  CLUS_3                            7                             45
D21V2, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                            6                             35
  CLUS_3                           13                             19
D21V3, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           12                             38
  CLUS_2                            4                             26
  CLUS_3                           13                             18
D21V4, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                           14                             50
  CLUS_3                           11                             25
D21V5, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           11                             26
  CLUS_3                           11                             25
D21V6, multiclass
        clus
vv       AMP PEAK 21(17Q25.1) MUTATED AMP PEAK 21(17Q25.1) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           12                             40
  CLUS_3                            8                             24

Clustering(22) Variable = Amp Peak 22(19q13.31) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE
  CLUS_1                            15                              27
  CLUS_2                            17                              15
  CLUS_3                            11                              41
D22V2, multiclass
        clus
vv       AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE
  CLUS_1                            16                              37
  CLUS_2                            16                              25
  CLUS_3                            11                              21
D22V3, multiclass
        clus
vv       AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE
  CLUS_1                            14                              36
  CLUS_2                            11                              19
  CLUS_3                            14                              17
D22V4, multiclass
        clus
vv       AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE
  CLUS_1                             2                               9
  CLUS_2                            20                              44
  CLUS_3                            17                              19
D22V5, multiclass
        clus
vv       AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE
  CLUS_1                            10                              31
  CLUS_2                            11                              26
  CLUS_3                            17                              19
D22V6, multiclass
        clus
vv       AMP PEAK 22(19Q13.31) MUTATED AMP PEAK 22(19Q13.31) WILD-TYPE
  CLUS_1                            11                              19
  CLUS_2                            16                              36
  CLUS_3                            11                              21

Clustering(23) Variable = Amp Peak 23(20q11.21) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            29                              13
  CLUS_2                            16                              16
  CLUS_3                            16                              36
D23V2, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            24                              29
  CLUS_2                            18                              23
  CLUS_3                            19                              13
D23V3, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            22                              28
  CLUS_2                            13                              17
  CLUS_3                            19                              12
D23V4, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                             7                               4
  CLUS_2                            27                              37
  CLUS_3                            20                              16
D23V5, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            18                              23
  CLUS_2                            21                              16
  CLUS_3                            18                              18
D23V6, multiclass
        clus
vv       AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE
  CLUS_1                            17                              13
  CLUS_2                            25                              27
  CLUS_3                            15                              17

Clustering(24) Variable = Amp Peak 24(Xq28) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        13                          29
  CLUS_2                        10                          22
  CLUS_3                        13                          39
D24V2, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        20                          33
  CLUS_2                         8                          33
  CLUS_3                         8                          24
D24V3, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        15                          35
  CLUS_2                        11                          19
  CLUS_3                         8                          23
D24V4, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         4                           7
  CLUS_2                        19                          45
  CLUS_3                        11                          25
D24V5, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                        18                          23
  CLUS_2                         7                          30
  CLUS_3                         9                          27
D24V6, multiclass
        clus
vv       AMP PEAK 24(XQ28) MUTATED AMP PEAK 24(XQ28) WILD-TYPE
  CLUS_1                         7                          23
  CLUS_2                        13                          39
  CLUS_3                        14                          18

Clustering(25) Variable = Del Peak  1(1p36.23) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                            9                             23
  CLUS_3                            5                             47
D25V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            6                             47
  CLUS_2                            4                             37
  CLUS_3                           10                             22
D25V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            2                             48
  CLUS_2                            7                             23
  CLUS_3                           10                             21
D25V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                            4                             60
  CLUS_3                           12                             24
D25V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            5                             32
  CLUS_3                            8                             28
D25V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                            1                             51
  CLUS_3                            8                             24

Clustering(26) Variable = Del Peak  2(1p13.1) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           5                            37
  CLUS_2                           2                            30
  CLUS_3                           5                            47
D26V2, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           6                            47
  CLUS_2                           5                            36
  CLUS_3                           1                            31
D26V3, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           5                            45
  CLUS_2                           3                            27
  CLUS_3                           3                            28
D26V4, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                           7                            57
  CLUS_3                           3                            33
D26V5, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           6                            31
  CLUS_3                           2                            34
D26V6, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                           6                            46
  CLUS_3                           3                            29

Clustering(27) Variable = Del Peak  3(2q22.1) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           4                            38
  CLUS_2                          10                            22
  CLUS_3                           8                            44
D27V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                           7                            34
  CLUS_3                           4                            28
D27V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                           6                            24
  CLUS_3                           5                            26
D27V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           1                            10
  CLUS_2                          13                            51
  CLUS_3                           7                            29
D27V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           6                            31
  CLUS_3                           7                            29
D27V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) MUTATED DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                           9                            43
  CLUS_3                           6                            26

Clustering(28) Variable = Del Peak  4(2q37.1) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                          21                            11
  CLUS_3                          17                            35
D28V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          26                            27
  CLUS_2                          18                            23
  CLUS_3                           7                            25
D28V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          23                            27
  CLUS_2                          15                            15
  CLUS_3                           9                            22
D28V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                          31                            33
  CLUS_3                          12                            24
D28V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                          21                            20
  CLUS_2                          14                            23
  CLUS_3                          11                            25
D28V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.1) MUTATED DEL PEAK  4(2Q37.1) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          23                            29
  CLUS_3                          16                            16

Clustering(29) Variable = Del Peak  5(3p11.1) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE
  CLUS_1                          15                            27
  CLUS_2                          22                            10
  CLUS_3                          14                            38
D29V2, multiclass
        clus
vv       DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE
  CLUS_1                          27                            26
  CLUS_2                          17                            24
  CLUS_3                           7                            25
D29V3, multiclass
        clus
vv       DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE
  CLUS_1                          24                            26
  CLUS_2                          13                            17
  CLUS_3                          10                            21
D29V4, multiclass
        clus
vv       DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                          36                            28
  CLUS_3                           9                            27
D29V5, multiclass
        clus
vv       DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE
  CLUS_1                          22                            19
  CLUS_2                          12                            25
  CLUS_3                          13                            23
D29V6, multiclass
        clus
vv       DEL PEAK  5(3P11.1) MUTATED DEL PEAK  5(3P11.1) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          20                            32
  CLUS_3                          20                            12

Clustering(30) Variable = Del Peak  6(4q22.1) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                          12                            30
  CLUS_2                          21                            11
  CLUS_3                           6                            46
D30V2, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                          15                            38
  CLUS_2                          18                            23
  CLUS_3                           6                            26
D30V3, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                          11                            39
  CLUS_2                          14                            16
  CLUS_3                           9                            22
D30V4, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                          17                            47
  CLUS_3                          13                            23
D30V5, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                          15                            26
  CLUS_2                           7                            30
  CLUS_3                          12                            24
D30V6, multiclass
        clus
vv       DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          13                            39
  CLUS_3                          13                            19

Clustering(31) Variable = Del Peak  7(4q35.2) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          13                            29
  CLUS_2                          23                             9
  CLUS_3                          11                            41
D31V2, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          16                            37
  CLUS_2                          22                            19
  CLUS_3                           9                            23
D31V3, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          13                            37
  CLUS_2                          16                            14
  CLUS_3                          12                            19
D31V4, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                           6                             5
  CLUS_2                          19                            45
  CLUS_3                          16                            20
D31V5, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          17                            24
  CLUS_2                          11                            26
  CLUS_3                          14                            22
D31V6, multiclass
        clus
vv       DEL PEAK  7(4Q35.2) MUTATED DEL PEAK  7(4Q35.2) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          16                            36
  CLUS_3                          15                            17

Clustering(32) Variable = Del Peak  8(5q14.3) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE
  CLUS_1                          11                            31
  CLUS_2                          15                            17
  CLUS_3                          10                            42
D32V2, multiclass
        clus
vv       DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE
  CLUS_1                          18                            35
  CLUS_2                          13                            28
  CLUS_3                           5                            27
D32V3, multiclass
        clus
vv       DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE
  CLUS_1                          18                            32
  CLUS_2                           9                            21
  CLUS_3                           8                            23
D32V4, multiclass
        clus
vv       DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                          25                            39
  CLUS_3                           8                            28
D32V5, multiclass
        clus
vv       DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE
  CLUS_1                          15                            26
  CLUS_2                           7                            30
  CLUS_3                          11                            25
D32V6, multiclass
        clus
vv       DEL PEAK  8(5Q14.3) MUTATED DEL PEAK  8(5Q14.3) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          15                            37
  CLUS_3                          12                            20

Clustering(33) Variable = Del Peak  9(6p24.3) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           6                            36
  CLUS_2                           3                            29
  CLUS_3                           9                            43
D33V2, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                           3                            38
  CLUS_3                           4                            28
D33V3, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                           2                            28
  CLUS_3                           4                            27
D33V4, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                          12                            52
  CLUS_3                           2                            34
D33V5, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           8                            29
  CLUS_3                           4                            32
D33V6, multiclass
        clus
vv       DEL PEAK  9(6P24.3) MUTATED DEL PEAK  9(6P24.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                           8                            44
  CLUS_3                           5                            27

Clustering(34) Variable = Del Peak 10(6p12.1) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE
  CLUS_1                           5                            37
  CLUS_2                           6                            26
  CLUS_3                           9                            43
D34V2, multiclass
        clus
vv       DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                           5                            36
  CLUS_3                           4                            28
D34V3, multiclass
        clus
vv       DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE
  CLUS_1                          10                            40
  CLUS_2                           4                            26
  CLUS_3                           3                            28
D34V4, multiclass
        clus
vv       DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE
  CLUS_1                           2                             9
  CLUS_2                          13                            51
  CLUS_3                           2                            34
D34V5, multiclass
        clus
vv       DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           6                            31
  CLUS_3                           5                            31
D34V6, multiclass
        clus
vv       DEL PEAK 10(6P12.1) MUTATED DEL PEAK 10(6P12.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           6                            46
  CLUS_3                           9                            23

Clustering(35) Variable = Del Peak 11(6q26) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        14                          28
  CLUS_2                        17                          15
  CLUS_3                        17                          35
D35V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        23                          30
  CLUS_2                        12                          29
  CLUS_3                        13                          19
D35V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        21                          29
  CLUS_2                         8                          22
  CLUS_3                        13                          18
D35V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         3                           8
  CLUS_2                        26                          38
  CLUS_3                        13                          23
D35V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        17                          24
  CLUS_2                        15                          22
  CLUS_3                        11                          25
D35V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        10                          20
  CLUS_2                        18                          34
  CLUS_3                        15                          17

Clustering(36) Variable = Del Peak 12(7q34) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                         7                          35
  CLUS_2                        14                          18
  CLUS_3                         7                          45
D36V2, multiclass
        clus
vv       DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                        13                          40
  CLUS_2                         8                          33
  CLUS_3                         7                          25
D36V3, multiclass
        clus
vv       DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                         8                          42
  CLUS_2                        11                          19
  CLUS_3                         7                          24
D36V4, multiclass
        clus
vv       DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                         3                           8
  CLUS_2                        13                          51
  CLUS_3                        10                          26
D36V5, multiclass
        clus
vv       DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                        13                          28
  CLUS_2                         4                          33
  CLUS_3                         9                          27
D36V6, multiclass
        clus
vv       DEL PEAK 12(7Q34) MUTATED DEL PEAK 12(7Q34) WILD-TYPE
  CLUS_1                         5                          25
  CLUS_2                        10                          42
  CLUS_3                        11                          21

Clustering(37) Variable = Del Peak 13(10q23.31) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            12                              30
  CLUS_2                            16                              16
  CLUS_3                            11                              41
D37V2, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            15                              38
  CLUS_2                            15                              26
  CLUS_3                             9                              23
D37V3, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            13                              37
  CLUS_2                            13                              17
  CLUS_3                            10                              21
D37V4, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                             7                               4
  CLUS_2                            15                              49
  CLUS_3                            14                              22
D37V5, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            11                              30
  CLUS_2                            13                              24
  CLUS_3                            11                              25
D37V6, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                             8                              22
  CLUS_2                            17                              35
  CLUS_3                            10                              22

Clustering(38) Variable = Del Peak 14(10q26.3) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           19                             13
  CLUS_3                            8                             44
D38V2, multiclass
        clus
vv       DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE
  CLUS_1                           18                             35
  CLUS_2                           13                             28
  CLUS_3                            7                             25
D38V3, multiclass
        clus
vv       DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                           12                             18
  CLUS_3                            8                             23
D38V4, multiclass
        clus
vv       DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                           17                             47
  CLUS_3                           12                             24
D38V5, multiclass
        clus
vv       DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                            9                             28
  CLUS_3                           12                             24
D38V6, multiclass
        clus
vv       DEL PEAK 14(10Q26.3) MUTATED DEL PEAK 14(10Q26.3) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           16                             36
  CLUS_3                           10                             22

Clustering(39) Variable = Del Peak 15(11p15.1) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                           14                             28
  CLUS_2                           13                             19
  CLUS_3                           13                             39
D39V2, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                           22                             31
  CLUS_2                           12                             29
  CLUS_3                            6                             26
D39V3, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                           21                             29
  CLUS_2                            7                             23
  CLUS_3                            8                             23
D39V4, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                           26                             38
  CLUS_3                            9                             27
D39V5, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                           15                             26
  CLUS_2                            8                             29
  CLUS_3                           10                             26
D39V6, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           17                             35
  CLUS_3                           10                             22

Clustering(40) Variable = Del Peak 16(11q25) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE
  CLUS_1                         31                           11
  CLUS_2                         22                           10
  CLUS_3                         21                           31
D40V2, multiclass
        clus
vv       DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE
  CLUS_1                         36                           17
  CLUS_2                         23                           18
  CLUS_3                         15                           17
D40V3, multiclass
        clus
vv       DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE
  CLUS_1                         34                           16
  CLUS_2                         17                           13
  CLUS_3                         14                           17
D40V4, multiclass
        clus
vv       DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE
  CLUS_1                          8                            3
  CLUS_2                         41                           23
  CLUS_3                         16                           20
D40V5, multiclass
        clus
vv       DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE
  CLUS_1                         30                           11
  CLUS_2                         16                           21
  CLUS_3                         22                           14
D40V6, multiclass
        clus
vv       DEL PEAK 16(11Q25) MUTATED DEL PEAK 16(11Q25) WILD-TYPE
  CLUS_1                         15                           15
  CLUS_2                         32                           20
  CLUS_3                         21                           11

Clustering(41) Variable = Del Peak 17(13q13.3) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE
  CLUS_1                           16                             26
  CLUS_2                           18                             14
  CLUS_3                           18                             34
D41V2, multiclass
        clus
vv       DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE
  CLUS_1                           24                             29
  CLUS_2                           20                             21
  CLUS_3                            8                             24
D41V3, multiclass
        clus
vv       DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE
  CLUS_1                           20                             30
  CLUS_2                           15                             15
  CLUS_3                           10                             21
D41V4, multiclass
        clus
vv       DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE
  CLUS_1                            5                              6
  CLUS_2                           27                             37
  CLUS_3                           13                             23
D41V5, multiclass
        clus
vv       DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE
  CLUS_1                           24                             17
  CLUS_2                           11                             26
  CLUS_3                           12                             24
D41V6, multiclass
        clus
vv       DEL PEAK 17(13Q13.3) MUTATED DEL PEAK 17(13Q13.3) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           22                             30
  CLUS_3                           17                             15

Clustering(42) Variable = Del Peak 18(14q32.31) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                             6                              36
  CLUS_2                            11                              21
  CLUS_3                             8                              44
D42V2, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                             4                              49
  CLUS_2                            11                              30
  CLUS_3                            10                              22
D42V3, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                             3                              47
  CLUS_2                             6                              24
  CLUS_3                            12                              19
D42V4, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                             3                               8
  CLUS_2                             5                              59
  CLUS_3                            13                              23
D42V5, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             5                              32
  CLUS_3                            12                              24
D42V6, multiclass
        clus
vv       DEL PEAK 18(14Q32.31) MUTATED DEL PEAK 18(14Q32.31) WILD-TYPE
  CLUS_1                            11                              19
  CLUS_2                             4                              48
  CLUS_3                             6                              26

Clustering(43) Variable = Del Peak 19(15q15.1) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           17                             15
  CLUS_3                            5                             47
D43V2, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                           12                             29
  CLUS_3                            8                             24
D43V3, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            9                             41
  CLUS_2                           10                             20
  CLUS_3                            7                             24
D43V4, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                           12                             52
  CLUS_3                           10                             26
D43V5, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                           11                             30
  CLUS_2                            4                             33
  CLUS_3                            9                             27
D43V6, multiclass
        clus
vv       DEL PEAK 19(15Q15.1) MUTATED DEL PEAK 19(15Q15.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                            7                             45
  CLUS_3                           11                             21

Clustering(44) Variable = Del Peak 20(16q11.2) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                           10                             32
  CLUS_2                            6                             26
  CLUS_3                            9                             43
D44V2, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                           10                             43
  CLUS_2                            4                             37
  CLUS_3                           11                             21
D44V3, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            6                             24
  CLUS_3                           12                             19
D44V4, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                            4                              7
  CLUS_2                            7                             57
  CLUS_3                           12                             24
D44V5, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            7                             30
  CLUS_3                           10                             26
D44V6, multiclass
        clus
vv       DEL PEAK 20(16Q11.2) MUTATED DEL PEAK 20(16Q11.2) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                            4                             48
  CLUS_3                            5                             27

Clustering(45) Variable = Del Peak 21(16q23.1) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            9                             33
  CLUS_2                            7                             25
  CLUS_3                           12                             40
D45V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                            6                             35
  CLUS_3                           13                             19
D45V3, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            3                             47
  CLUS_2                            9                             21
  CLUS_3                           13                             18
D45V4, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            6                              5
  CLUS_2                            5                             59
  CLUS_3                           14                             22
D45V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            8                             29
  CLUS_3                           11                             25
D45V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                            4                             48
  CLUS_3                            6                             26

Clustering(46) Variable = Del Peak 22(17p12) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         14                           28
  CLUS_2                         17                           15
  CLUS_3                         11                           41
D46V2, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         23                           30
  CLUS_2                         11                           30
  CLUS_3                          8                           24
D46V3, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         17                           33
  CLUS_2                         13                           17
  CLUS_3                          7                           24
D46V4, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                          4                            7
  CLUS_2                         23                           41
  CLUS_3                         10                           26
D46V5, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         19                           22
  CLUS_2                         10                           27
  CLUS_3                          9                           27
D46V6, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                          6                           24
  CLUS_2                         16                           36
  CLUS_3                         16                           16

Clustering(47) Variable = Del Peak 23(17q25.3) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           10                             22
  CLUS_3                            5                             47
D47V2, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           17                             36
  CLUS_2                            4                             37
  CLUS_3                            1                             31
D47V3, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                            7                             23
  CLUS_3                            1                             30
D47V4, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            0                             11
  CLUS_2                           16                             48
  CLUS_3                            3                             33
D47V5, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                            5                             32
  CLUS_3                            3                             33
D47V6, multiclass
        clus
vv       DEL PEAK 23(17Q25.3) MUTATED DEL PEAK 23(17Q25.3) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            8                             44
  CLUS_3                           10                             22

Clustering(48) Variable = Del Peak 24(19p13.3) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                           13                             29
  CLUS_2                           17                             15
  CLUS_3                            9                             43
D48V2, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                           16                             37
  CLUS_2                           13                             28
  CLUS_3                           10                             22
D48V3, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                           14                             16
  CLUS_3                           14                             17
D48V4, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                           17                             47
  CLUS_3                           17                             19
D48V5, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                            6                             31
  CLUS_3                           16                             20
D48V6, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                            5                             47
  CLUS_3                           16                             16

Clustering(49) Variable = Del Peak 25(20p12.1) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            6                             36
  CLUS_2                            5                             27
  CLUS_3                            6                             46
D49V2, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                            3                             38
  CLUS_3                            5                             27
D49V3, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            3                             27
  CLUS_3                            5                             26
D49V4, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            1                             10
  CLUS_2                            8                             56
  CLUS_3                            4                             32
D49V5, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                            3                             34
  CLUS_3                            3                             33
D49V6, multiclass
        clus
vv       DEL PEAK 25(20P12.1) MUTATED DEL PEAK 25(20P12.1) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                            4                             48
  CLUS_3                            5                             27

Clustering(50) Variable = Del Peak 26(21q21.1) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                           11                             31
  CLUS_2                           10                             22
  CLUS_3                            6                             46
D50V2, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                           12                             29
  CLUS_3                            6                             26
D50V3, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            9                             41
  CLUS_2                            8                             22
  CLUS_3                            8                             23
D50V4, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            2                              9
  CLUS_2                           12                             52
  CLUS_3                           11                             25
D50V5, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                           11                             30
  CLUS_2                            6                             31
  CLUS_3                            7                             29
D50V6, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           10                             42
  CLUS_3                            8                             24

Clustering(51) Variable = Del Peak 27(Xp11.3) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE
  CLUS_1                           9                            33
  CLUS_2                          17                            15
  CLUS_3                          11                            41
D51V2, multiclass
        clus
vv       DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE
  CLUS_1                          24                            29
  CLUS_2                           8                            33
  CLUS_3                           5                            27
D51V3, multiclass
        clus
vv       DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE
  CLUS_1                          16                            34
  CLUS_2                          12                            18
  CLUS_3                           6                            25
D51V4, multiclass
        clus
vv       DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE
  CLUS_1                           4                             7
  CLUS_2                          23                            41
  CLUS_3                           7                            29
D51V5, multiclass
        clus
vv       DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE
  CLUS_1                          18                            23
  CLUS_2                           5                            32
  CLUS_3                          11                            25
D51V6, multiclass
        clus
vv       DEL PEAK 27(XP11.3) MUTATED DEL PEAK 27(XP11.3) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          10                            42
  CLUS_3                          17                            15

Clustering(52) Variable = Del Peak 28(Xq21.33) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE
  CLUS_1                            7                             35
  CLUS_2                           13                             19
  CLUS_3                            7                             45
D52V2, multiclass
        clus
vv       DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE
  CLUS_1                           19                             34
  CLUS_2                            5                             36
  CLUS_3                            3                             29
D52V3, multiclass
        clus
vv       DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE
  CLUS_1                           12                             38
  CLUS_2                           10                             20
  CLUS_3                            4                             27
D52V4, multiclass
        clus
vv       DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE
  CLUS_1                            3                              8
  CLUS_2                           19                             45
  CLUS_3                            4                             32
D52V5, multiclass
        clus
vv       DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                            5                             32
  CLUS_3                            8                             28
D52V6, multiclass
        clus
vv       DEL PEAK 28(XQ21.33) MUTATED DEL PEAK 28(XQ21.33) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            8                             44
  CLUS_3                           14                             18
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"          "MRNASEQ_CNMF" 
                     V4                      V5                      V6 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
