GDAC_MergedClusteringPipeline Execution Log 9:03 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2904200/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/COAD-TP/2904198/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2861336/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2906947/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile COAD-TP
GDAC_mergedClustering1 PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2900473/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COAD-TP/2859774/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2900477/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COAD-TP/2859772/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2860145/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COAD-TP/2860140/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
Execution Times:
Submitted: 09:03:58 09-04-13
Completed:
Elapsed: 00 hrs 55 mins 48 secs

step 1. GDAC_mergedClustering [id: 375078] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2904200/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/COAD-TP/2904198/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2861336/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2906947/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
mergedfile COAD-TP
PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2900473/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COAD-TP/2859774/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2900477/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COAD-TP/2859772/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COAD-TP/2860145/3.GDAC_CNMFselectcluster.Finished/COAD-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COAD-TP/2860140/3.GDAC_selectBestcluster.Finished/COAD-TP.bestclus.txt
Output Files:
 COAD-TP.transferedmergedcluster.txt
 .lsf.out
 COAD-TP.mergedcluster.txt
 stdout.txt
Execution Times:
Submitted: 09:04:00 09-04-13
Completed: 09:04:31 09-04-13
Elapsed: 00 hrs 00 mins 30 secs

step 2. GDAC_mergedReport [id: 375080]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster COAD-TP.transferedmergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 09:04:00 09-04-13
Completed: 09:59:44 09-04-13
Elapsed: 00 hrs 55 mins 44 secs