
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376795/COAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COAD-TP/2843117/1.GDAC_clinicalDataPicker.Finished/COAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=423, in cluster file=155, common to both=155
[1] "Reduce the number of clustering variables from 121 to 120."
[1] 120 155
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          103            52 
  APC MUTATED APC WILD-TYPE 
          103            52 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            20            135 
  BRAF MUTATED BRAF WILD-TYPE 
            20            135 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             29             126 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             29             126 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            58             97 
  KRAS MUTATED KRAS WILD-TYPE 
            58             97 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            15            140 
  NRAS MUTATED NRAS WILD-TYPE 
            15            140 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              129 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              129 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            75             80 
  TP53 MUTATED TP53 WILD-TYPE 
            75             80 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             18             137 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             18             137 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               19               136 
  FAM123B MUTATED FAM123B WILD-TYPE 
               19               136 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
           69            86 
  TTN MUTATED TTN WILD-TYPE 
           69            86 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               17               138 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               17               138 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              142 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              142 
[1] "TNFRSF10C MUTATION ANALYSIS"
[1] 3
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 149 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 149 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             10             145 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             10             145 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               9              146 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               9              146 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             151 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             151 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            29            126 
  FAT4 MUTATED FAT4 WILD-TYPE 
            29            126 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             30             125 
  LRP1B MUTATED LRP1B WILD-TYPE 
             30             125 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             17             138 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             17             138 
[1] "GRIA1 MUTATION ANALYSIS"
[1] 3
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             14             141 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             14             141 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            25            130 
  SDK1 MUTATED SDK1 WILD-TYPE 
            25            130 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
             9            146 
  SOX9 MUTATED SOX9 WILD-TYPE 
             9            146 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           27           128 
  DMD MUTATED DMD WILD-TYPE 
           27           128 
[1] "CNTN6 MUTATION ANALYSIS"
[1] 3
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             15             140 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             15             140 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               8              147 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               8              147 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             147 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             147 
[1] "OR6N1 MUTATION ANALYSIS"
[1] 3
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              8             147 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              8             147 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             139 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             139 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              10              145 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              10              145 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                148 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                148 
[1] "FAM22F MUTATION ANALYSIS"
[1] 3
  FAM22F MUTATED FAM22F WILD-TYPE 
               8              147 
  FAM22F MUTATED FAM22F WILD-TYPE 
               8              147 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               8              147 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               8              147 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              11              144 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              11              144 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
            15            140 
  AFF2 MUTATED AFF2 WILD-TYPE 
            15            140 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             149 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             149 
[1] "OTOL1 MUTATION ANALYSIS"
[1] 3
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              7             148 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              7             148 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             145 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             145 
[1] "ISL1 MUTATION ANALYSIS"
[1] 3
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            147 
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            147 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                10                145 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                10                145 
[1] "ACOT4 MUTATION ANALYSIS"
[1] 3
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             152 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             152 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             13             142 
  CDH11 MUTATED CDH11 WILD-TYPE 
             13             142 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           21           134 
  ATM MUTATED ATM WILD-TYPE 
           21           134 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            11            144 
  TPTE MUTATED TPTE WILD-TYPE 
            11            144 
[1] "BTNL8 MUTATION ANALYSIS"
[1] 3
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             152 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             152 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             143 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             143 
[1] "ROBO1 MUTATION ANALYSIS"
[1] 3
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             14             141 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             14             141 
[1] "GGT1 MUTATION ANALYSIS"
[1] 3
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            152 
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            152 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           26           129 
  FLG MUTATED FLG WILD-TYPE 
           26           129 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              13              142 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              13              142 
[1] "POSTN MUTATION ANALYSIS"
[1] 3
  POSTN MUTATED POSTN WILD-TYPE 
             11             144 
  POSTN MUTATED POSTN WILD-TYPE 
             11             144 
[1] "OR51V1 MUTATION ANALYSIS"
[1] 3
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              146 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              146 
[1] "GRIK3 MUTATION ANALYSIS"
[1] 3
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             14             141 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             14             141 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              9             146 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              9             146 
[1] "PRDM9 MUTATION ANALYSIS"
[1] 3
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             11             144 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             11             144 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              146 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              146 
[1] "KIAA1486 MUTATION ANALYSIS"
[1] 3
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 9                146 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 9                146 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            147 
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            147 
[1] "NCKAP5 MUTATION ANALYSIS"
[1] 3
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              13              142 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              13              142 
[1] "C8B MUTATION ANALYSIS"
[1] 3
  C8B MUTATED C8B WILD-TYPE 
            9           146 
  C8B MUTATED C8B WILD-TYPE 
            9           146 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             28             127 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             28             127 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             145 
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             145 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                5               150 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                5               150 
[1] "DCAF4L2 MUTATION ANALYSIS"
[1] 3
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                9               146 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                9               146 
[1] "DKK2 MUTATION ANALYSIS"
[1] 3
  DKK2 MUTATED DKK2 WILD-TYPE 
             5            150 
  DKK2 MUTATED DKK2 WILD-TYPE 
             5            150 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             13             142 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             13             142 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             14             141 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             14             141 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               145 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               145 
[1] "IFT80 MUTATION ANALYSIS"
[1] 3
  IFT80 MUTATED IFT80 WILD-TYPE 
              7             148 
  IFT80 MUTATED IFT80 WILD-TYPE 
              7             148 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              7             148 
  INHBA MUTATED INHBA WILD-TYPE 
              7             148 
[1] "KLK2 MUTATION ANALYSIS"
[1] 3
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            152 
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            152 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             11             144 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             11             144 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             149 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             149 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             12             143 
  SCN7A MUTATED SCN7A WILD-TYPE 
             12             143 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              148 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              148 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             13             142 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             13             142 
[1] "OR8J1 MUTATION ANALYSIS"
[1] 3
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              4             151 
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              4             151 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             12             143 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             12             143 
[1] "SFMBT2 MUTATION ANALYSIS"
[1] 3
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              12              143 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              12              143 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               8              147 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               8              147 
[1] "PCDH17 MUTATION ANALYSIS"
[1] 3
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              14              141 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              14              141 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             11             144 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             11             144 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              17              138 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              17              138 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             4            151 
  PTEN MUTATED PTEN WILD-TYPE 
             4            151 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             138 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             138 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             15             140 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             15             140 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            13            142 
  LIFR MUTATED LIFR WILD-TYPE 
            13            142 
[1] "ZNF429 MUTATION ANALYSIS"
[1] 3
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               7              148 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               7              148 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             149 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             149 
[1] "TMEM132D MUTATION ANALYSIS"
[1] 3
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                15                140 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                15                140 
[1] "SAT1 MUTATION ANALYSIS"
[1] 3
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            151 
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            151 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             10             145 
  CDH18 MUTATED CDH18 WILD-TYPE 
             10             145 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               6              149 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               6              149 
[1] "SYT16 MUTATION ANALYSIS"
[1] 3
  SYT16 MUTATED SYT16 WILD-TYPE 
              6             149 
  SYT16 MUTATED SYT16 WILD-TYPE 
              6             149 
[1] "DKK4 MUTATION ANALYSIS"
[1] 3
  DKK4 MUTATED DKK4 WILD-TYPE 
             4            151 
  DKK4 MUTATED DKK4 WILD-TYPE 
             4            151 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             14             141 
  NALCN MUTATED NALCN WILD-TYPE 
             14             141 
[1] "SULT1C4 MUTATION ANALYSIS"
[1] 3
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               152 
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3               152 
[1] "UMOD MUTATION ANALYSIS"
[1] 3
  UMOD MUTATED UMOD WILD-TYPE 
             7            148 
  UMOD MUTATED UMOD WILD-TYPE 
             7            148 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              149 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              149 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              143 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              143 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7               148 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7               148 
[1] "ESR1 MUTATION ANALYSIS"
[1] 3
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            144 
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            144 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             10             145 
  FAM5C MUTATED FAM5C WILD-TYPE 
             10             145 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             10             145 
  MIER3 MUTATED MIER3 WILD-TYPE 
             10             145 
[1] "NLRP5 MUTATION ANALYSIS"
[1] 3
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             10             145 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             10             145 
[1] "OR6T1 MUTATION ANALYSIS"
[1] 3
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             149 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             149 
[1] "PCDH10 MUTATION ANALYSIS"
[1] 3
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              141 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              141 
[1] "PCDHB5 MUTATION ANALYSIS"
[1] 3
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              12              143 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              12              143 
[1] "TRPC6 MUTATION ANALYSIS"
[1] 3
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              8             147 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              8             147 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             4            151 
  RHOA MUTATED RHOA WILD-TYPE 
             4            151 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             37             118 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             37             118 
[1] "CYTL1 MUTATION ANALYSIS"
[1] 3
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             151 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             151 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              8             147 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              8             147 
[1] "GALNT14 MUTATION ANALYSIS"
[1] 3
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                9               146 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                9               146 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               7              148 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               7              148 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               144 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               144 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               144 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               144 
[1] "TFAP2D MUTATION ANALYSIS"
[1] 3
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               5              150 
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               5              150 
[1] "TNR MUTATION ANALYSIS"
[1] 3
  TNR MUTATED TNR WILD-TYPE 
           15           140 
  TNR MUTATED TNR WILD-TYPE 
           15           140 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               10               145 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               10               145 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             16             139 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             16             139 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 155 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
         423          503          523          447          541          437 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3514 TCGA-AA-3516 
         472          332          278          246           NA           NA 
TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 
          30           NA           NA           NA           NA           31 
TCGA-AA-3664 TCGA-AA-3666 TCGA-AA-3667 TCGA-AA-3672 TCGA-AA-3673 TCGA-AA-3678 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3679 TCGA-AA-3680 TCGA-AA-3681 TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 
          30           NA           NA           NA           30           NA 
TCGA-AA-3692 TCGA-AA-3693 TCGA-AA-3695 TCGA-AA-3696 TCGA-AA-3710 TCGA-AA-3715 
          NA           NA           NA           NA           31           30 
TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3818 TCGA-AA-3819 TCGA-AA-3821 
          30           NA           NA           NA           NA           NA 
TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3845 
          NA           NA           31           31           28           NA 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3850 TCGA-AA-3851 TCGA-AA-3852 TCGA-AA-3854 
          30           30           NA           NA           NA           31 
TCGA-AA-3855 TCGA-AA-3856 TCGA-AA-3858 TCGA-AA-3860 TCGA-AA-3864 TCGA-AA-3866 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3867 TCGA-AA-3869 TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3930 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
          NA           30           31           30           30           31 
TCGA-AA-3955 TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3971 TCGA-AA-3972 TCGA-AA-3973 
          NA           NA           31           NA           NA           NA 
TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 TCGA-AA-3979 TCGA-AA-3980 TCGA-AA-3982 
          30           NA           31           NA           NA           NA 
TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 TCGA-AA-3994 TCGA-AA-A004 TCGA-AA-A00A 
          NA           30           NA           NA          424          548 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
         578          913         1035          548          548          517 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
          NA          822          822           30          517          456 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
         669          638          457           30          396          365 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
         365          396           NA           31         1065           31 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A022 TCGA-AA-A024 
        1005         1065          791          638           NA           NA 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
        1580         1215           NA           NA           28         1246 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        1215           NA         1245          496           29 
Variable 1:'AGE':	nDistinctValues=46,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=36,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                       "GENDER"                   
[3] "HISTOLOGICAL.TYPE"         "PATHOLOGY.T"              
[5] "PATHOLOGY.N"               "PATHOLOGICSPREAD(M)"      
[7] "TUMOR.STAGE"               "COMPLETENESS.OF.RESECTION"
[9] "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
30 57 44 21 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 155 columns, 1 survival variables, and 9 non-survival variables.
AGE, nv=46, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  4  33 103  14 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  4  33 103  14 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
  4  33 103  14 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  4  33 103  14 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
91 30 34 
[1] "table(vv)"
vv
N0 N1 N2 
91 30 34 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 
91 30 34 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
91 30 34 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 30  57  44  21 
[1] "table(vv)"
vv
  I  II III  IV 
 30  57  44  21 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 30  57  44  21 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 30  57  44  21 
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=18, binary=FALSE, numeric=TRUE

Clustering(1) Variable = APC MUTATION ANALYSIS
D1V1, survival
               sevent
clus2            0  1
  APC MUTATED   44  9
  APC WILD-TYPE 24  2
  APC MUTATED APC WILD-TYPE 
           53            26 
  APC MUTATED APC WILD-TYPE 
            9             2 
$`APC MUTATED`
TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3555 
       17.19        17.79        10.92         9.14         8.09         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99         1.02        18.02 
TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F 
       17.00        14.99        21.99        20.98        15.02        13.02 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AY-4071 
        5.03         0.92        40.96        18.02         0.95 

$`APC WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-AA-3518 
       13.91        16.54        14.70        14.37        15.52         1.02 
TCGA-AA-3526 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3877 TCGA-AA-3949 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00Q 
        1.02         0.99        13.94        30.02        34.03        27.02 
TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01X TCGA-AA-A02Y 
        0.99         0.99        12.00        38.07        26.01        39.95 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  APC MUTATED APC WILD-TYPE 
         0.92          0.92 
  APC MUTATED APC WILD-TYPE 
        51.95         40.93 
  APC MUTATED APC WILD-TYPE 
        9.140        13.925 
[1] "0.9 - 52.0 (9.1)"  "0.9 - 40.9 (13.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
[1] "hr=" "2.2"
D1V2, continuous
D1V3, binary
               cls
clus             0  1
  APC MUTATED   45 58
  APC WILD-TYPE 32 20
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     45   58
  APC WILD-TYPE   32   20
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE          45            32
  MALE            58            20
D1V4, binary
               cls
clus             0  1
  APC MUTATED   86 15
  APC WILD-TYPE 42  9
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     86   15
  APC WILD-TYPE   42    9
                               clus
vv                              APC MUTATED APC WILD-TYPE
  COLON ADENOCARCINOMA                   86            42
  COLON MUCINOUS ADENOCARCINOMA          15             9
               vv
clus            T1 T2 T3 T4
  APC MUTATED    2 21 70 10
  APC WILD-TYPE  2 12 33  4
D1V5, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           2             2
  T2          21            12
  T3          70            33
  T4          10             4
               vv
clus            N0 N1 N2
  APC MUTATED   61 19 23
  APC WILD-TYPE 30 11 11
D1V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  N0          61            30
  N1          19            11
  N2          23            11
               vv
clus            M0 M1 M1A
  APC MUTATED   82 17   1
  APC WILD-TYPE 48  4   0
D1V7, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  M0           82            48
  M1           17             4
  M1A           1             0
               vv
clus             I II III IV
  APC MUTATED   19 39  25 17
  APC WILD-TYPE 11 18  19  4
D1V8, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  I            19            11
  II           39            18
  III          25            19
  IV           17             4
               vv
clus            R0 R1 R2 RX
  APC MUTATED   84  0 16  0
  APC WILD-TYPE 45  1  3  1
D1V9, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  R0          84            45
  R1           0             1
  R2          16             3
  RX           0             1
D1V10, continuous

Clustering(2) Variable = BRAF MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  BRAF MUTATED   10  1
  BRAF WILD-TYPE 58 10
  BRAF MUTATED BRAF WILD-TYPE 
            11             68 
  BRAF MUTATED BRAF WILD-TYPE 
             1             10 
$`BRAF MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 
       16.54        14.70         0.99         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A01D TCGA-AA-A01P 
        1.02        19.00        18.02         0.99        38.07 

$`BRAF WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       13.94        18.02        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        20.98        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  BRAF MUTATED BRAF WILD-TYPE 
          0.99           0.92 
  BRAF MUTATED BRAF WILD-TYPE 
         38.07          51.95 
  BRAF MUTATED BRAF WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.3"
D2V2, continuous
D2V3, binary
                cls
clus              0  1
  BRAF MUTATED   14  6
  BRAF WILD-TYPE 63 72
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     14    6
  BRAF WILD-TYPE   63   72
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           14             63
  MALE              6             72
D2V4, binary
                cls
clus               0   1
  BRAF MUTATED     9  11
  BRAF WILD-TYPE 119  13
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      9   11
  BRAF WILD-TYPE  119   13
                               clus
vv                              BRAF MUTATED BRAF WILD-TYPE
  COLON ADENOCARCINOMA                     9            119
  COLON MUCINOUS ADENOCARCINOMA           11             13
                vv
clus             T1 T2 T3 T4
  BRAF MUTATED    1  3 11  4
  BRAF WILD-TYPE  3 30 92 10
D2V5, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            1              3
  T2            3             30
  T3           11             92
  T4            4             10
                vv
clus             N0 N1 N2
  BRAF MUTATED   11  5  4
  BRAF WILD-TYPE 80 25 30
D2V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  N0           11             80
  N1            5             25
  N2            4             30
                vv
clus              M0  M1 M1A
  BRAF MUTATED    19   1   0
  BRAF WILD-TYPE 111  20   1
D2V7, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  M0            19            111
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  BRAF MUTATED    4  7   8  1
  BRAF WILD-TYPE 26 50  36 20
D2V8, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  I              4             26
  II             7             50
  III            8             36
  IV             1             20
                vv
clus              R0  R1  R2  RX
  BRAF MUTATED    17   0   1   0
  BRAF WILD-TYPE 112   1  18   1
D2V9, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  R0           17            112
  R1            0              1
  R2            1             18
  RX            0              1
D2V10, continuous

Clustering(3) Variable = FBXW7 MUTATION ANALYSIS
D3V1, survival
                 sevent
clus2              0  1
  FBXW7 MUTATED   13  2
  FBXW7 WILD-TYPE 55  9
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15              64 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              2               9 
$`FBXW7 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 
       16.54        14.70        17.79        10.92         1.02         1.02 
TCGA-AA-3848 TCGA-AA-3949 TCGA-AA-A00J TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
        0.99         0.99        18.02        13.02         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A03F 
       20.98        39.06        18.02 

$`FBXW7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 
       13.91        17.19        14.37        15.52         9.14         8.09 
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 
        1.02         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       12.00        38.07         1.02        33.04        35.01        26.01 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        40.93        16.31         0.95 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.99            0.92 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          39.06           51.95 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
         14.700           8.615 
[1] "1.0 - 39.1 (14.7)" "0.9 - 52.0 (8.6)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
                 cls
clus               0  1
  FBXW7 MUTATED   18 11
  FBXW7 WILD-TYPE 59 67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     18   11
  FBXW7 WILD-TYPE   59   67
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE            18              59
  MALE              11              67
D3V4, binary
                 cls
clus                0   1
  FBXW7 MUTATED    18  10
  FBXW7 WILD-TYPE 110  14
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     18   10
  FBXW7 WILD-TYPE  110   14
                               clus
vv                              FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON ADENOCARCINOMA                     18             110
  COLON MUCINOUS ADENOCARCINOMA            10              14
                 vv
clus              T1 T2 T3 T4
  FBXW7 MUTATED    0  2 24  2
  FBXW7 WILD-TYPE  4 31 79 12
D3V5, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             0               4
  T2             2              31
  T3            24              79
  T4             2              12
                 vv
clus              N0 N1 N2
  FBXW7 MUTATED   15  6  8
  FBXW7 WILD-TYPE 76 24 26
D3V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0            15              76
  N1             6              24
  N2             8              26
                 vv
clus               M0  M1 M1A
  FBXW7 MUTATED    29   0   0
  FBXW7 WILD-TYPE 101  21   1
D3V7, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  M0             29             101
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  FBXW7 MUTATED    2 13  14  0
  FBXW7 WILD-TYPE 28 44  30 21
D3V8, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  I               2              28
  II             13              44
  III            14              30
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  FBXW7 MUTATED    27   0   0   0
  FBXW7 WILD-TYPE 102   1  19   1
D3V9, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  R0            27             102
  R1             0               1
  R2             0              19
  RX             0               1
D3V10, continuous

Clustering(4) Variable = KRAS MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   30  3
  KRAS WILD-TYPE 38  8
  KRAS MUTATED KRAS WILD-TYPE 
            33             46 
  KRAS MUTATED KRAS WILD-TYPE 
             3              8 
$`KRAS MUTATED`
TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 
       15.52         9.14         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 
        1.02         0.92         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00K TCGA-AA-A00N 
        0.99         1.02         0.99        18.02        18.02         4.01 
TCGA-AA-A00Q TCGA-AA-A00W TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       27.02        14.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01R TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02W 
       35.01        26.01        20.98        51.95         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       39.95        18.02        40.93 

$`KRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-A004 TCGA-AA-A00D 
        0.99         0.99         1.02         1.02        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00R 
       30.02        34.03        18.02        17.00        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01P 
       17.00        21.99        20.98        15.02         0.99        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A02F 
        1.02         1.02        33.04        35.01        39.06        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AY-4070 TCGA-AY-4071 
        2.01         5.03        16.31         0.95 

  KRAS MUTATED KRAS WILD-TYPE 
          0.92           0.95 
  KRAS MUTATED KRAS WILD-TYPE 
         51.95          39.95 
  KRAS MUTATED KRAS WILD-TYPE 
        12.000         12.415 
[1] "0.9 - 52.0 (12.0)" "0.9 - 40.0 (12.4)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
[1] "hr=" "2.3"
D4V2, continuous
D4V3, binary
                cls
clus              0  1
  KRAS MUTATED   25 33
  KRAS WILD-TYPE 52 45
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     25   33
  KRAS WILD-TYPE   52   45
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           25             52
  MALE             33             45
D4V4, binary
                cls
clus              0  1
  KRAS MUTATED   46 10
  KRAS WILD-TYPE 82 14
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     46   10
  KRAS WILD-TYPE   82   14
                               clus
vv                              KRAS MUTATED KRAS WILD-TYPE
  COLON ADENOCARCINOMA                    46             82
  COLON MUCINOUS ADENOCARCINOMA           10             14
                vv
clus             T1 T2 T3 T4
  KRAS MUTATED    1 13 39  5
  KRAS WILD-TYPE  3 20 64  9
D4V5, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            1              3
  T2           13             20
  T3           39             64
  T4            5              9
                vv
clus             N0 N1 N2
  KRAS MUTATED   38  9 11
  KRAS WILD-TYPE 53 21 23
D4V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0           38             53
  N1            9             21
  N2           11             23
                vv
clus             M0 M1 M1A
  KRAS MUTATED   49  6   1
  KRAS WILD-TYPE 81 15   0
D4V7, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  M0            49             81
  M1             6             15
  M1A            1              0
                vv
clus              I II III IV
  KRAS MUTATED   10 25  14  7
  KRAS WILD-TYPE 20 32  30 14
D4V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I             10             20
  II            25             32
  III           14             30
  IV             7             14
                vv
clus             R0 R1 R2 RX
  KRAS MUTATED   51  0  5  1
  KRAS WILD-TYPE 78  1 14  0
D4V9, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0           51             78
  R1            0              1
  R2            5             14
  RX            1              0
D4V10, continuous

Clustering(5) Variable = NRAS MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  NRAS MUTATED    4  3
  NRAS WILD-TYPE 64  8
  NRAS MUTATED NRAS WILD-TYPE 
             7             72 
  NRAS MUTATED NRAS WILD-TYPE 
             3              8 
$`NRAS MUTATED`
TCGA-A6-2678 TCGA-AA-3666 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 
       14.37         1.02        34.03         4.01        35.01        39.06 
TCGA-AA-A02F 
       39.95 

$`NRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       26.01        20.98        51.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  NRAS MUTATED NRAS WILD-TYPE 
          1.02           0.92 
  NRAS MUTATED NRAS WILD-TYPE 
         39.95          51.95 
  NRAS MUTATED NRAS WILD-TYPE 
         34.03          10.03 
[1] "1.0 - 40.0 (34.0)" "0.9 - 52.0 (10.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "2.1"
D5V2, continuous
D5V3, binary
                cls
clus              0  1
  NRAS MUTATED    3 12
  NRAS WILD-TYPE 74 66
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      3   12
  NRAS WILD-TYPE   74   66
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE            3             74
  MALE             12             66
D5V4, binary
                cls
clus               0   1
  NRAS MUTATED    13   2
  NRAS WILD-TYPE 115  22
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     13    2
  NRAS WILD-TYPE  115   22
                               clus
vv                              NRAS MUTATED NRAS WILD-TYPE
  COLON ADENOCARCINOMA                    13            115
  COLON MUCINOUS ADENOCARCINOMA            2             22
                vv
clus             T1 T2 T3 T4
  NRAS MUTATED    0  5  8  2
  NRAS WILD-TYPE  4 28 95 12
D5V5, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  T1            0              4
  T2            5             28
  T3            8             95
  T4            2             12
                vv
clus             N0 N1 N2
  NRAS MUTATED    8  6  1
  NRAS WILD-TYPE 83 24 33
D5V6, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  N0            8             83
  N1            6             24
  N2            1             33
                vv
clus              M0  M1 M1A
  NRAS MUTATED    11   3   0
  NRAS WILD-TYPE 119  18   1
D5V7, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  M0            11            119
  M1             3             18
  M1A            0              1
                vv
clus              I II III IV
  NRAS MUTATED    3  4   4  3
  NRAS WILD-TYPE 27 53  40 18
D5V8, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  I              3             27
  II             4             53
  III            4             40
  IV             3             18
                vv
clus              R0  R1  R2  RX
  NRAS MUTATED    11   0   4   0
  NRAS WILD-TYPE 118   1  15   1
D5V9, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  R0           11            118
  R1            0              1
  R2            4             15
  RX            0              1
D5V10, continuous

Clustering(6) Variable = PIK3CA MUTATION ANALYSIS
D6V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   15  3
  PIK3CA WILD-TYPE 53  8
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              18               61 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               3                8 
$`PIK3CA MUTATED`
TCGA-A6-3808 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3848 TCGA-AA-3877 
        9.14         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         0.99         1.02         4.01        20.98        12.00 
TCGA-AA-A01K TCGA-AA-A01V TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       13.02        35.01         0.92        39.95        18.02        40.93 

$`PIK3CA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3941 TCGA-AA-3949 
        1.02         0.92         0.99         1.02         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01Q 
       15.02         0.99        13.02        12.00        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AY-4070 
       51.95        39.95         2.01         5.03        40.96        16.31 
TCGA-AY-4071 
        0.95 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.92             0.92 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           40.93            51.95 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           2.515           13.910 
[1] "0.9 - 40.9 (2.5)"  "0.9 - 52.0 (13.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.3"
D6V2, continuous
D6V3, binary
                  cls
clus                0  1
  PIK3CA MUTATED   12 14
  PIK3CA WILD-TYPE 65 64
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     12   14
  PIK3CA WILD-TYPE   65   64
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             12               65
  MALE               14               64
D6V4, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    19   7
  PIK3CA WILD-TYPE 109  17
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     19    7
  PIK3CA WILD-TYPE  109   17
                               clus
vv                              PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON ADENOCARCINOMA                      19              109
  COLON MUCINOUS ADENOCARCINOMA              7               17
                  vv
clus               T1 T2 T3 T4
  PIK3CA MUTATED    1  7 15  3
  PIK3CA WILD-TYPE  3 26 88 11
D6V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                3
  T2              7               26
  T3             15               88
  T4              3               11
                  vv
clus               N0 N1 N2
  PIK3CA MUTATED   22  1  3
  PIK3CA WILD-TYPE 69 29 31
D6V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             22               69
  N1              1               29
  N2              3               31
                  vv
clus                M0  M1 M1A
  PIK3CA MUTATED    24   1   0
  PIK3CA WILD-TYPE 106  20   1
D6V7, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  M0              24              106
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  PIK3CA MUTATED    7 14   3  1
  PIK3CA WILD-TYPE 23 43  41 20
D6V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  I                7               23
  II              14               43
  III              3               41
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  PIK3CA MUTATED    24   0   1   0
  PIK3CA WILD-TYPE 105   1  18   1
D6V9, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  R0             24              105
  R1              0                1
  R2              1               18
  RX              0                1
D6V10, continuous

Clustering(7) Variable = TP53 MUTATION ANALYSIS
D7V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   37  5
  TP53 WILD-TYPE 31  6
  TP53 MUTATED TP53 WILD-TYPE 
            42             37 
  TP53 MUTATED TP53 WILD-TYPE 
             5              6 
$`TP53 MUTATED`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        8.09         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99         1.02        13.94        19.00        30.02        34.03 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        27.02        14.99        20.98         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A02F 
       12.00        13.02         1.02        33.04        20.98        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        2.01         5.03        40.96        40.93        16.31         0.95 

$`TP53 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3710 
       16.54        17.79         9.14         1.02         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00A 
        0.99         0.99         1.02         1.02         0.99        18.02 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02         4.01        27.02         0.99        17.00 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       21.99        15.02        12.00        38.07         1.02        35.01 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02Y 
       35.01        26.01        39.06        51.95         0.92        39.95 
TCGA-AA-A03F 
       18.02 

  TP53 MUTATED TP53 WILD-TYPE 
          0.92           0.92 
  TP53 MUTATED TP53 WILD-TYPE 
         40.96          51.95 
  TP53 MUTATED TP53 WILD-TYPE 
         12.51           9.14 
[1] "0.9 - 41.0 (12.5)" "0.9 - 52.0 (9.1)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
                cls
clus              0  1
  TP53 MUTATED   34 41
  TP53 WILD-TYPE 43 37
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     34   41
  TP53 WILD-TYPE   43   37
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           34             43
  MALE             41             37
D7V4, binary
                cls
clus              0  1
  TP53 MUTATED   68  5
  TP53 WILD-TYPE 60 19
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     68    5
  TP53 WILD-TYPE   60   19
                               clus
vv                              TP53 MUTATED TP53 WILD-TYPE
  COLON ADENOCARCINOMA                    68             60
  COLON MUCINOUS ADENOCARCINOMA            5             19
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED    3 17 49  5
  TP53 WILD-TYPE  1 16 54  9
D7V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            3              1
  T2           17             16
  T3           49             54
  T4            5              9
                vv
clus             N0 N1 N2
  TP53 MUTATED   39 16 20
  TP53 WILD-TYPE 52 14 14
D7V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           39             52
  N1           16             14
  N2           20             14
                vv
clus             M0 M1 M1A
  TP53 MUTATED   60 11   1
  TP53 WILD-TYPE 70 10   0
D7V7, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  M0            60             70
  M1            11             10
  M1A            1              0
                vv
clus              I II III IV
  TP53 MUTATED   15 20  26 11
  TP53 WILD-TYPE 15 37  18 10
D7V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I             15             15
  II            20             37
  III           26             18
  IV            11             10
                vv
clus             R0 R1 R2 RX
  TP53 MUTATED   61  1 10  0
  TP53 WILD-TYPE 68  0  9  1
D7V9, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0           61             68
  R1            1              0
  R2           10              9
  RX            0              1
D7V10, continuous

Clustering(8) Variable = SMAD4 MUTATION ANALYSIS
D8V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    7  1
  SMAD4 WILD-TYPE 61 10
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              8              71 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              10 
$`SMAD4 MUTATED`
TCGA-A6-2676 TCGA-A6-2678 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-A00K 
       14.70        14.37         0.99         1.02         0.99        18.02 
TCGA-AA-A01D TCGA-AA-A02O 
        0.99         0.92 

$`SMAD4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3679 
        9.14         8.09         1.02         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         5.03        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.92            0.92 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          18.02           51.95 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          1.005          12.000 
[1] "0.9 - 18.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
[1] "hr=" "1.8"
D8V2, continuous
D8V3, binary
                 cls
clus               0  1
  SMAD4 MUTATED   10  8
  SMAD4 WILD-TYPE 67 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     10    8
  SMAD4 WILD-TYPE   67   70
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE            10              67
  MALE               8              70
D8V4, binary
                 cls
clus                0   1
  SMAD4 MUTATED    12   5
  SMAD4 WILD-TYPE 116  19
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     12    5
  SMAD4 WILD-TYPE  116   19
                               clus
vv                              SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             5              19
                 vv
clus              T1 T2 T3 T4
  SMAD4 MUTATED    0  3 13  1
  SMAD4 WILD-TYPE  4 30 90 13
D8V5, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               4
  T2             3              30
  T3            13              90
  T4             1              13
                 vv
clus              N0 N1 N2
  SMAD4 MUTATED   12  3  3
  SMAD4 WILD-TYPE 79 27 31
D8V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0            12              79
  N1             3              27
  N2             3              31
                 vv
clus               M0  M1 M1A
  SMAD4 MUTATED    15   2   0
  SMAD4 WILD-TYPE 115  19   1
D8V7, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             15             115
  M1              2              19
  M1A             0               1
                 vv
clus               I II III IV
  SMAD4 MUTATED    2  9   4  2
  SMAD4 WILD-TYPE 28 48  40 19
D8V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  I               2              28
  II              9              48
  III             4              40
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  SMAD4 MUTATED    15   0   3   0
  SMAD4 WILD-TYPE 114   1  16   1
D8V9, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  R0            15             114
  R1             0               1
  R2             3              16
  RX             0               1
D8V10, continuous

Clustering(9) Variable = FAM123B MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  FAM123B MUTATED    6  1
  FAM123B WILD-TYPE 62 10
  FAM123B MUTATED FAM123B WILD-TYPE 
                7                72 
  FAM123B MUTATED FAM123B WILD-TYPE 
                1                10 
$`FAM123B MUTATED`
TCGA-A6-3808 TCGA-AA-3666 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A010 
        9.14         1.02         0.99         1.02        18.02        20.98 
TCGA-AA-A01D 
        0.99 

$`FAM123B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  FAM123B MUTATED FAM123B WILD-TYPE 
             0.99              0.92 
  FAM123B MUTATED FAM123B WILD-TYPE 
            20.98             51.95 
  FAM123B MUTATED FAM123B WILD-TYPE 
             1.02             12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
                   cls
clus                 0  1
  FAM123B MUTATED   10  9
  FAM123B WILD-TYPE 67 69
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     10    9
  FAM123B WILD-TYPE   67   69
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  FEMALE              10                67
  MALE                 9                69
D9V4, binary
                   cls
clus                  0   1
  FAM123B MUTATED    14   4
  FAM123B WILD-TYPE 114  20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     14    4
  FAM123B WILD-TYPE  114   20
                               clus
vv                              FAM123B MUTATED FAM123B WILD-TYPE
  COLON ADENOCARCINOMA                       14               114
  COLON MUCINOUS ADENOCARCINOMA               4                20
                   vv
clus                T1 T2 T3 T4
  FAM123B MUTATED    0  3 13  3
  FAM123B WILD-TYPE  4 30 90 11
D9V5, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  T1               0                 4
  T2               3                30
  T3              13                90
  T4               3                11
                   vv
clus                N0 N1 N2
  FAM123B MUTATED   13  1  5
  FAM123B WILD-TYPE 78 29 29
D9V6, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  N0              13                78
  N1               1                29
  N2               5                29
                   vv
clus                 M0  M1 M1A
  FAM123B MUTATED    16   2   0
  FAM123B WILD-TYPE 114  19   1
D9V7, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  M0               16               114
  M1                2                19
  M1A               0                 1
                   vv
clus                 I II III IV
  FAM123B MUTATED    2 10   4  2
  FAM123B WILD-TYPE 28 47  40 19
D9V8, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  I                 2                28
  II               10                47
  III               4                40
  IV                2                19
                   vv
clus                 R0  R1  R2  RX
  FAM123B MUTATED    15   0   2   0
  FAM123B WILD-TYPE 114   1  17   1
D9V9, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  R0              15               114
  R1               0                 1
  R2               2                17
  RX               0                 1
D9V10, continuous

Clustering(10) Variable = TTN MUTATION ANALYSIS
D10V1, survival
               sevent
clus2            0  1
  TTN MUTATED   35  6
  TTN WILD-TYPE 33  5
  TTN MUTATED TTN WILD-TYPE 
           41            38 
  TTN MUTATED TTN WILD-TYPE 
            6             5 
$`TTN MUTATED`
TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3710 
       14.70        17.79         9.14         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3844 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         0.99         0.92         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O 
        0.99        30.02        18.02        18.02         4.01        27.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01P 
        0.99        20.98         0.99        13.02        12.00        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H 
       35.01         1.02        35.01        20.98        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 
        5.03         0.92        40.96        39.95         0.95 

$`TTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3952 
        1.02         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00Q 
       13.94        18.02        19.00        34.03        17.00        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01G TCGA-AA-A01K 
       17.00        14.99        21.99        15.02        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A03F 
        1.02        33.04        26.01        39.06        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  TTN MUTATED TTN WILD-TYPE 
         0.92          0.99 
  TTN MUTATED TTN WILD-TYPE 
        51.95         40.93 
  TTN MUTATED TTN WILD-TYPE 
         1.02         14.68 
[1] "0.9 - 52.0 (1.0)"  "1.0 - 40.9 (14.7)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, binary
               cls
clus             0  1
  TTN MUTATED   37 32
  TTN WILD-TYPE 40 46
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     37   32
  TTN WILD-TYPE   40   46
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          37            40
  MALE            32            46
D10V4, binary
               cls
clus             0  1
  TTN MUTATED   51 16
  TTN WILD-TYPE 77  8
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     51   16
  TTN WILD-TYPE   77    8
                               clus
vv                              TTN MUTATED TTN WILD-TYPE
  COLON ADENOCARCINOMA                   51            77
  COLON MUCINOUS ADENOCARCINOMA          16             8
               vv
clus            T1 T2 T3 T4
  TTN MUTATED    2 18 40  8
  TTN WILD-TYPE  2 15 63  6
D10V5, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  T1           2             2
  T2          18            15
  T3          40            63
  T4           8             6
               vv
clus            N0 N1 N2
  TTN MUTATED   46 12 11
  TTN WILD-TYPE 45 18 23
D10V6, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  N0          46            45
  N1          12            18
  N2          11            23
               vv
clus            M0 M1 M1A
  TTN MUTATED   58  7   1
  TTN WILD-TYPE 72 14   0
D10V7, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  M0           58            72
  M1            7            14
  M1A           1             0
               vv
clus             I II III IV
  TTN MUTATED   18 25  16  8
  TTN WILD-TYPE 12 32  28 13
D10V8, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  I            18            12
  II           25            32
  III          16            28
  IV            8            13
               vv
clus            R0 R1 R2 RX
  TTN MUTATED   58  0  8  0
  TTN WILD-TYPE 71  1 11  1
D10V9, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  R0          58            71
  R1           0             1
  R2           8            11
  RX           0             1
D10V10, continuous

Clustering(11) Variable = WBSCR17 MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                0  1
  WBSCR17 MUTATED    7  0
  WBSCR17 WILD-TYPE 61 11
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                7                72 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                0                11 
$`WBSCR17 MUTATED`
TCGA-AA-3562 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 
        1.02         1.02         0.99         1.02         1.02        20.98 
TCGA-AA-A01X 
       26.01 

$`WBSCR17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z 
        1.02        35.01         1.02        33.04        35.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             0.99              0.92 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            26.01             51.95 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             1.02             12.51 
[1] "1.0 - 26.0 (1.0)"  "0.9 - 52.0 (12.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D11V2, continuous
D11V3, binary
                   cls
clus                 0  1
  WBSCR17 MUTATED    9  8
  WBSCR17 WILD-TYPE 68 70
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      9    8
  WBSCR17 WILD-TYPE   68   70
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               9                68
  MALE                 8                70
D11V4, binary
                   cls
clus                  0   1
  WBSCR17 MUTATED    15   2
  WBSCR17 WILD-TYPE 113  22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     15    2
  WBSCR17 WILD-TYPE  113   22
                               clus
vv                              WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON ADENOCARCINOMA                       15               113
  COLON MUCINOUS ADENOCARCINOMA               2                22
                   vv
clus                T1 T2 T3 T4
  WBSCR17 MUTATED    0  2 13  2
  WBSCR17 WILD-TYPE  4 31 90 12
D11V5, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               0                 4
  T2               2                31
  T3              13                90
  T4               2                12
                   vv
clus                N0 N1 N2
  WBSCR17 MUTATED   11  3  3
  WBSCR17 WILD-TYPE 80 27 31
D11V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0              11                80
  N1               3                27
  N2               3                31
                   vv
clus                 M0  M1 M1A
  WBSCR17 MUTATED    15   1   0
  WBSCR17 WILD-TYPE 115  20   1
D11V7, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               15               115
  M1                1                20
  M1A               0                 1
                   vv
clus                 I II III IV
  WBSCR17 MUTATED    0 10   5  1
  WBSCR17 WILD-TYPE 30 47  39 20
D11V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  I                 0                30
  II               10                47
  III               5                39
  IV                1                20
                   vv
clus                 R0  R1  R2  RX
  WBSCR17 MUTATED    13   0   1   1
  WBSCR17 WILD-TYPE 116   1  18   0
D11V9, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  R0              13               116
  R1               0                 1
  R2               1                18
  RX               1                 0
D11V10, continuous

Clustering(12) Variable = ACVR1B MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  ACVR1B MUTATED    7  2
  ACVR1B WILD-TYPE 61  9
  ACVR1B MUTATED ACVR1B WILD-TYPE 
               9               70 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
               2                9 
$`ACVR1B MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A01R 
       10.92         0.99         0.99        18.02        20.98        35.01 
TCGA-AA-A029 TCGA-AA-A02J TCGA-AA-A03F 
       51.95         5.03        18.02 

$`ACVR1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       20.98        39.06        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        40.93        16.31         0.95 

  ACVR1B MUTATED ACVR1B WILD-TYPE 
            0.99             0.92 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
           51.95            40.96 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
           18.02            10.57 
[1] "1.0 - 52.0 (18.0)" "0.9 - 41.0 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
                  cls
clus                0  1
  ACVR1B MUTATED    7  6
  ACVR1B WILD-TYPE 70 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED      7    6
  ACVR1B WILD-TYPE   70   72
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  FEMALE              7               70
  MALE                6               72
D12V4, binary
                  cls
clus                 0   1
  ACVR1B MUTATED     8   5
  ACVR1B WILD-TYPE 120  19
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED      8    5
  ACVR1B WILD-TYPE  120   19
                               clus
vv                              ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              5               19
                  vv
clus               T1 T2 T3 T4
  ACVR1B MUTATED    1  0  9  3
  ACVR1B WILD-TYPE  3 33 94 11
D12V5, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  T1              1                3
  T2              0               33
  T3              9               94
  T4              3               11
                  vv
clus               N0 N1 N2
  ACVR1B MUTATED    8  2  3
  ACVR1B WILD-TYPE 83 28 31
D12V6, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  N0              8               83
  N1              2               28
  N2              3               31
                  vv
clus                M0  M1 M1A
  ACVR1B MUTATED    12   1   0
  ACVR1B WILD-TYPE 118  20   1
D12V7, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  M0              12              118
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  ACVR1B MUTATED    1  6   5  1
  ACVR1B WILD-TYPE 29 51  39 20
D12V8, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  I                1               29
  II               6               51
  III              5               39
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  ACVR1B MUTATED    12   0   1   0
  ACVR1B WILD-TYPE 117   1  18   1
D12V9, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  R0             12              117
  R1              0                1
  R2              1               18
  RX              0                1
D12V10, continuous

Clustering(13) Variable = TNFRSF10C MUTATION ANALYSIS
D13V1, survival
                     sevent
clus2                  0  1
  TNFRSF10C MUTATED    1  0
  TNFRSF10C WILD-TYPE 67 11
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                  78 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  0                  11 
$`TNFRSF10C MUTATED`
TCGA-AA-3844 
        0.92 

$`TNFRSF10C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92                0.92 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               51.95 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               12.00 
[1] "0.9 - 0.9 (0.9)"   "0.9 - 52.0 (12.0)"
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" 
[1] "Remove cluster labels:" "TNFRSF10C MUTATED"     
clus
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                  78 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3846 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3848          TCGA-AA-3854          TCGA-AA-3877 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3939          TCGA-AA-3941          TCGA-AA-3947 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3949          TCGA-AA-3952          TCGA-AA-3966 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3977          TCGA-AA-3986 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A010          TCGA-AA-A017          TCGA-AA-A01D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01P          TCGA-AA-A01Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01R          TCGA-AA-A01S          TCGA-AA-A01T 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01V          TCGA-AA-A01X          TCGA-AA-A01Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02O 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AY-4070          TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
D13V2, continuous
D13V3, binary
                     cls
clus                   0  1
  TNFRSF10C MUTATED    2  4
  TNFRSF10C WILD-TYPE 75 74
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      2    4
  TNFRSF10C WILD-TYPE   75   74
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  FEMALE                 2                  75
  MALE                   4                  74
D13V4, binary
                     cls
clus                    0   1
  TNFRSF10C MUTATED     6   0
  TNFRSF10C WILD-TYPE 122  24
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  122   24
                               clus
vv                              TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON ADENOCARCINOMA                          6                 122
  COLON MUCINOUS ADENOCARCINOMA                 0                  24
                     vv
clus                   T1  T2  T3  T4
  TNFRSF10C MUTATED     0   2   2   2
  TNFRSF10C WILD-TYPE   4  31 101  12
D13V5, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  T1                 0                   4
  T2                 2                  31
  T3                 2                 101
  T4                 2                  12
                     vv
clus                  N0 N1 N2
  TNFRSF10C MUTATED    2  1  3
  TNFRSF10C WILD-TYPE 89 29 31
D13V6, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  N0                 2                  89
  N1                 1                  29
  N2                 3                  31
                     vv
clus                   M0  M1 M1A
  TNFRSF10C MUTATED     3   3   0
  TNFRSF10C WILD-TYPE 127  18   1
D13V7, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  M0                  3                 127
  M1                  3                  18
  M1A                 0                   1
                     vv
clus                   I II III IV
  TNFRSF10C MUTATED    2  0   1  3
  TNFRSF10C WILD-TYPE 28 57  43 18
D13V8, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  I                   2                  28
  II                  0                  57
  III                 1                  43
  IV                  3                  18
                     vv
clus                   R0  R1  R2  RX
  TNFRSF10C MUTATED     3   0   3   0
  TNFRSF10C WILD-TYPE 126   1  16   1
D13V9, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  R0                 3                 126
  R1                 0                   1
  R2                 3                  16
  RX                 0                   1
D13V10, continuous

Clustering(14) Variable = SMAD2 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  SMAD2 MUTATED    4  2
  SMAD2 WILD-TYPE 64  9
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              6              73 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              2               9 
$`SMAD2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02         4.01        35.01        39.06        51.95 

$`SMAD2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       33.04        26.01        20.98        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  SMAD2 MUTATED SMAD2 WILD-TYPE 
           1.02            0.92 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          51.95           40.96 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          19.51           12.00 
[1] "1.0 - 52.0 (19.5)" "0.9 - 41.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
[1] "hr=" "1.5"
D14V2, continuous
D14V3, binary
                 cls
clus               0  1
  SMAD2 MUTATED    3  7
  SMAD2 WILD-TYPE 74 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      3    7
  SMAD2 WILD-TYPE   74   71
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  FEMALE             3              74
  MALE               7              71
D14V4, binary
                 cls
clus                0   1
  SMAD2 MUTATED     7   3
  SMAD2 WILD-TYPE 121  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      7    3
  SMAD2 WILD-TYPE  121   21
                               clus
vv                              SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  SMAD2 MUTATED    0  3  5  2
  SMAD2 WILD-TYPE  4 30 98 12
D14V5, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             5              98
  T4             2              12
                 vv
clus              N0 N1 N2
  SMAD2 MUTATED    7  2  1
  SMAD2 WILD-TYPE 84 28 33
D14V6, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  N0             7              84
  N1             2              28
  N2             1              33
                 vv
clus               M0  M1 M1A
  SMAD2 MUTATED     7   2   0
  SMAD2 WILD-TYPE 123  19   1
D14V7, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  M0              7             123
  M1              2              19
  M1A             0               1
                 vv
clus               I II III IV
  SMAD2 MUTATED    1  5   1  2
  SMAD2 WILD-TYPE 29 52  43 19
D14V8, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  I               1              29
  II              5              52
  III             1              43
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  SMAD2 MUTATED     7   0   2   0
  SMAD2 WILD-TYPE 122   1  17   1
D14V9, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  R0             7             122
  R1             0               1
  R2             2              17
  RX             0               1
D14V10, continuous

Clustering(15) Variable = MAP2K4 MUTATION ANALYSIS
D15V1, survival
                  sevent
clus2               0  1
  MAP2K4 MUTATED    3  2
  MAP2K4 WILD-TYPE 65  9
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               5               74 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               2                9 
$`MAP2K4 MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02         0.99         4.01        20.98 

$`MAP2K4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            0.99             0.92 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
           20.98            51.95 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            1.02            12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
[1] "hr=" "5.6"
D15V2, continuous
D15V3, binary
                  cls
clus                0  1
  MAP2K4 MUTATED    5  4
  MAP2K4 WILD-TYPE 72 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      5    4
  MAP2K4 WILD-TYPE   72   74
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  FEMALE              5               72
  MALE                4               74
D15V4, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED     6   2
  MAP2K4 WILD-TYPE 122  22
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      6    2
  MAP2K4 WILD-TYPE  122   22
                               clus
vv                              MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              2               22
                  vv
clus               T1 T2 T3 T4
  MAP2K4 MUTATED    0  1  6  2
  MAP2K4 WILD-TYPE  4 32 97 12
D15V5, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              6               97
  T4              2               12
                  vv
clus               N0 N1 N2
  MAP2K4 MUTATED    7  1  1
  MAP2K4 WILD-TYPE 84 29 33
D15V6, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  N0              7               84
  N1              1               29
  N2              1               33
                  vv
clus                M0  M1 M1A
  MAP2K4 MUTATED     9   0   0
  MAP2K4 WILD-TYPE 121  21   1
D15V7, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  M0               9              121
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  MAP2K4 MUTATED    1  6   2  0
  MAP2K4 WILD-TYPE 29 51  42 21
D15V8, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  I                1               29
  II               6               51
  III              2               42
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  MAP2K4 MUTATED     8   0   0   0
  MAP2K4 WILD-TYPE 121   1  19   1
D15V9, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  R0              8              121
  R1              0                1
  R2              0               19
  RX              0                1
D15V10, continuous

Clustering(16) Variable = PCBP1 MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  PCBP1 MUTATED    2  0
  PCBP1 WILD-TYPE 66 11
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              2              77 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              0              11 
$`PCBP1 MUTATED`
TCGA-AA-3941 TCGA-AA-A01I 
        1.02        12.00 

$`PCBP1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  PCBP1 MUTATED PCBP1 WILD-TYPE 
           1.02            0.92 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
          12.00           51.95 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
           6.51           12.00 
[1] "1.0 - 12.0 (6.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
[1] "Remove cluster labels:" "PCBP1 MUTATED"         
clus
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AY-4071 
"PCBP1 WILD-TYPE" 
D16V2, continuous
D16V3, binary
                 cls
clus               0  1
  PCBP1 MUTATED    2  2
  PCBP1 WILD-TYPE 75 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      2    2
  PCBP1 WILD-TYPE   75   76
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  FEMALE             2              75
  MALE               2              76
D16V4, binary
                 cls
clus                0   1
  PCBP1 MUTATED     4   0
  PCBP1 WILD-TYPE 124  24
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      4    0
  PCBP1 WILD-TYPE  124   24
                               clus
vv                              PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             0              24
                 vv
clus               T1  T2  T3  T4
  PCBP1 MUTATED     0   1   2   1
  PCBP1 WILD-TYPE   4  32 101  13
D16V5, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             2             101
  T4             1              13
                 vv
clus              N0 N1 N2
  PCBP1 MUTATED    3  1  0
  PCBP1 WILD-TYPE 88 29 34
D16V6, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  N0             3              88
  N1             1              29
  N2             0              34
                 vv
clus               M0  M1 M1A
  PCBP1 MUTATED     3   0   1
  PCBP1 WILD-TYPE 127  21   0
D16V7, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  M0              3             127
  M1              0              21
  M1A             1               0
                 vv
clus               I II III IV
  PCBP1 MUTATED    1  2   0  1
  PCBP1 WILD-TYPE 29 55  44 20
D16V8, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  I               1              29
  II              2              55
  III             0              44
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  PCBP1 MUTATED     4   0   0   0
  PCBP1 WILD-TYPE 125   1  19   1
D16V9, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  R0             4             125
  R1             0               1
  R2             0              19
  RX             0               1
D16V10, continuous

Clustering(17) Variable = FAT4 MUTATION ANALYSIS
D17V1, survival
                sevent
clus2             0  1
  FAT4 MUTATED   15  1
  FAT4 WILD-TYPE 53 10
  FAT4 MUTATED FAT4 WILD-TYPE 
            16             63 
  FAT4 MUTATED FAT4 WILD-TYPE 
             1             10 
$`FAT4 MUTATED`
TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
       14.70         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01D 
        1.02        30.02         4.01        27.02        20.98         0.99 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A02O 
       35.01        35.01        26.01         0.92 

$`FAT4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02        33.04        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  FAT4 MUTATED FAT4 WILD-TYPE 
          0.92           0.92 
  FAT4 MUTATED FAT4 WILD-TYPE 
         35.01          51.95 
  FAT4 MUTATED FAT4 WILD-TYPE 
         2.515         12.000 
[1] "0.9 - 35.0 (2.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
[1] "hr=" "1.9"
D17V2, continuous
D17V3, binary
                cls
clus              0  1
  FAT4 MUTATED   16 13
  FAT4 WILD-TYPE 61 65
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     16   13
  FAT4 WILD-TYPE   61   65
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  FEMALE           16             61
  MALE             13             65
D17V4, binary
                cls
clus               0   1
  FAT4 MUTATED    21   7
  FAT4 WILD-TYPE 107  17
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     21    7
  FAT4 WILD-TYPE  107   17
                               clus
vv                              FAT4 MUTATED FAT4 WILD-TYPE
  COLON ADENOCARCINOMA                    21            107
  COLON MUCINOUS ADENOCARCINOMA            7             17
                vv
clus             T1 T2 T3 T4
  FAT4 MUTATED    0  6 18  4
  FAT4 WILD-TYPE  4 27 85 10
D17V5, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  T1            0              4
  T2            6             27
  T3           18             85
  T4            4             10
                vv
clus             N0 N1 N2
  FAT4 MUTATED   17  6  6
  FAT4 WILD-TYPE 74 24 28
D17V6, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  N0           17             74
  N1            6             24
  N2            6             28
                vv
clus              M0  M1 M1A
  FAT4 MUTATED    27   1   0
  FAT4 WILD-TYPE 103  20   1
D17V7, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  M0            27            103
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  FAT4 MUTATED    3 13  11  1
  FAT4 WILD-TYPE 27 44  33 20
D17V8, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  I              3             27
  II            13             44
  III           11             33
  IV             1             20
                vv
clus              R0  R1  R2  RX
  FAT4 MUTATED    24   0   1   1
  FAT4 WILD-TYPE 105   1  18   0
D17V9, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  R0           24            105
  R1            0              1
  R2            1             18
  RX            1              0
D17V10, continuous

Clustering(18) Variable = LRP1B MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2              0  1
  LRP1B MUTATED   15  3
  LRP1B WILD-TYPE 53  8
  LRP1B MUTATED LRP1B WILD-TYPE 
             18              61 
  LRP1B MUTATED LRP1B WILD-TYPE 
              3               8 
$`LRP1B MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3939 
       16.54         8.09         1.02         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02        18.02        18.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02H TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 
        1.02        35.01         2.01        40.96        39.95         0.95 

$`LRP1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
       10.92         9.14         0.99         1.02         1.02         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A03F TCGA-AA-A03J 
       51.95        39.95         5.03         0.92        18.02        40.93 
TCGA-AY-4070 
       16.31 

  LRP1B MUTATED LRP1B WILD-TYPE 
           0.95            0.92 
  LRP1B MUTATED LRP1B WILD-TYPE 
          40.96           51.95 
  LRP1B MUTATED LRP1B WILD-TYPE 
           3.01           13.02 
[1] "0.9 - 41.0 (3.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
[1] "hr=" "1.2"
D18V2, continuous
D18V3, binary
                 cls
clus               0  1
  LRP1B MUTATED   18 12
  LRP1B WILD-TYPE 59 66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     18   12
  LRP1B WILD-TYPE   59   66
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            18              59
  MALE              12              66
D18V4, binary
                 cls
clus                0   1
  LRP1B MUTATED    18  10
  LRP1B WILD-TYPE 110  14
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     18   10
  LRP1B WILD-TYPE  110   14
                               clus
vv                              LRP1B MUTATED LRP1B WILD-TYPE
  COLON ADENOCARCINOMA                     18             110
  COLON MUCINOUS ADENOCARCINOMA            10              14
                 vv
clus              T1 T2 T3 T4
  LRP1B MUTATED    1  5 20  4
  LRP1B WILD-TYPE  3 28 83 10
D18V5, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  T1             1               3
  T2             5              28
  T3            20              83
  T4             4              10
                 vv
clus              N0 N1 N2
  LRP1B MUTATED   21  4  5
  LRP1B WILD-TYPE 70 26 29
D18V6, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  N0            21              70
  N1             4              26
  N2             5              29
                 vv
clus               M0  M1 M1A
  LRP1B MUTATED    25   3   0
  LRP1B WILD-TYPE 105  18   1
D18V7, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  M0             25             105
  M1              3              18
  M1A             0               1
                 vv
clus               I II III IV
  LRP1B MUTATED    5 15   6  3
  LRP1B WILD-TYPE 25 42  38 18
D18V8, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  I               5              25
  II             15              42
  III             6              38
  IV              3              18
                 vv
clus               R0  R1  R2  RX
  LRP1B MUTATED    25   0   2   0
  LRP1B WILD-TYPE 104   1  17   1
D18V9, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  R0            25             104
  R1             0               1
  R2             2              17
  RX             0               1
D18V10, continuous

Clustering(19) Variable = NRXN1 MUTATION ANALYSIS
D19V1, survival
                 sevent
clus2              0  1
  NRXN1 MUTATED    8  1
  NRXN1 WILD-TYPE 60 10
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              9              70 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              1              10 
$`NRXN1 MUTATED`
TCGA-AA-3526 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A02F 
       35.01        20.98        39.95 

$`NRXN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 
        1.02        35.01         1.02        33.04        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  NRXN1 MUTATED NRXN1 WILD-TYPE 
           0.99            0.92 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          39.95           51.95 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 40.0 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
                 cls
clus               0  1
  NRXN1 MUTATED    7 10
  NRXN1 WILD-TYPE 70 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      7   10
  NRXN1 WILD-TYPE   70   68
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE             7              70
  MALE              10              68
D19V4, binary
                 cls
clus                0   1
  NRXN1 MUTATED    14   2
  NRXN1 WILD-TYPE 114  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     14    2
  NRXN1 WILD-TYPE  114   22
                               clus
vv                              NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON ADENOCARCINOMA                     14             114
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  NRXN1 MUTATED    1  6  7  3
  NRXN1 WILD-TYPE  3 27 96 11
D19V5, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             1               3
  T2             6              27
  T3             7              96
  T4             3              11
                 vv
clus              N0 N1 N2
  NRXN1 MUTATED   15  1  1
  NRXN1 WILD-TYPE 76 29 33
D19V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  N0            15              76
  N1             1              29
  N2             1              33
                 vv
clus               M0  M1 M1A
  NRXN1 MUTATED    15   1   0
  NRXN1 WILD-TYPE 115  20   1
D19V7, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  M0             15             115
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  NRXN1 MUTATED    5  9   1  1
  NRXN1 WILD-TYPE 25 48  43 20
D19V8, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  I               5              25
  II              9              48
  III             1              43
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  NRXN1 MUTATED    15   0   1   0
  NRXN1 WILD-TYPE 114   1  18   1
D19V9, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  R0            15             114
  R1             0               1
  R2             1              18
  RX             0               1
D19V10, continuous

Clustering(20) Variable = GRIA1 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  GRIA1 MUTATED   11  1
  GRIA1 WILD-TYPE 57 10
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             12              67 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
              1              10 
$`GRIA1 MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-3844 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00E 
       14.70         1.02         0.92         1.02         1.02        30.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01K TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02Y 
        0.99        20.98        13.02        39.95         2.01        39.95 

$`GRIA1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  GRIA1 MUTATED GRIA1 WILD-TYPE 
           0.92            0.92 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          39.95           51.95 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          7.515          12.000 
[1] "0.9 - 40.0 (7.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
[1] "hr=" "2.2"
D20V2, continuous
D20V3, binary
                 cls
clus               0  1
  GRIA1 MUTATED   10  4
  GRIA1 WILD-TYPE 67 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     10    4
  GRIA1 WILD-TYPE   67   74
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  FEMALE            10              67
  MALE               4              74
D20V4, binary
                 cls
clus                0   1
  GRIA1 MUTATED    12   2
  GRIA1 WILD-TYPE 116  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     12    2
  GRIA1 WILD-TYPE  116   22
                               clus
vv                              GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  GRIA1 MUTATED    0  4  7  2
  GRIA1 WILD-TYPE  4 29 96 12
D20V5, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  T1             0               4
  T2             4              29
  T3             7              96
  T4             2              12
                 vv
clus              N0 N1 N2
  GRIA1 MUTATED    9  2  3
  GRIA1 WILD-TYPE 82 28 31
D20V6, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  N0             9              82
  N1             2              28
  N2             3              31
                 vv
clus               M0  M1 M1A
  GRIA1 MUTATED    10   2   1
  GRIA1 WILD-TYPE 120  19   0
D20V7, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  M0             10             120
  M1              2              19
  M1A             1               0
                 vv
clus               I II III IV
  GRIA1 MUTATED    3  5   2  3
  GRIA1 WILD-TYPE 27 52  42 18
D20V8, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  I               3              27
  II              5              52
  III             2              42
  IV              3              18
                 vv
clus               R0  R1  R2  RX
  GRIA1 MUTATED    11   0   2   0
  GRIA1 WILD-TYPE 118   1  17   1
D20V9, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  R0            11             118
  R1             0               1
  R2             2              17
  RX             0               1
D20V10, continuous

Clustering(21) Variable = SDK1 MUTATION ANALYSIS
D21V1, survival
                sevent
clus2             0  1
  SDK1 MUTATED   15  1
  SDK1 WILD-TYPE 53 10
  SDK1 MUTATED SDK1 WILD-TYPE 
            16             63 
  SDK1 MUTATED SDK1 WILD-TYPE 
             1             10 
$`SDK1 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3811 TCGA-AA-3842 
       16.54        17.19         1.02         1.02         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         1.02         0.99         1.02         4.01 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02O TCGA-AA-A02W 
        1.02        35.01         0.92        40.96 

$`SDK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 
        9.14         8.09         0.99         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 
        0.99         1.02         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02Y TCGA-AA-A03F 
       51.95        39.95         2.01         5.03        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  SDK1 MUTATED SDK1 WILD-TYPE 
          0.92           0.92 
  SDK1 MUTATED SDK1 WILD-TYPE 
         40.96          51.95 
  SDK1 MUTATED SDK1 WILD-TYPE 
          1.02          13.91 
[1] "0.9 - 41.0 (1.0)"  "0.9 - 52.0 (13.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
[1] "hr=" "1.7"
D21V2, continuous
D21V3, binary
                cls
clus              0  1
  SDK1 MUTATED   14 11
  SDK1 WILD-TYPE 63 67
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     14   11
  SDK1 WILD-TYPE   63   67
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  FEMALE           14             63
  MALE             11             67
D21V4, binary
                cls
clus               0   1
  SDK1 MUTATED    17   7
  SDK1 WILD-TYPE 111  17
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     17    7
  SDK1 WILD-TYPE  111   17
                               clus
vv                              SDK1 MUTATED SDK1 WILD-TYPE
  COLON ADENOCARCINOMA                    17            111
  COLON MUCINOUS ADENOCARCINOMA            7             17
                vv
clus             T1 T2 T3 T4
  SDK1 MUTATED    1  4 18  2
  SDK1 WILD-TYPE  3 29 85 12
D21V5, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  T1            1              3
  T2            4             29
  T3           18             85
  T4            2             12
                vv
clus             N0 N1 N2
  SDK1 MUTATED   15  3  7
  SDK1 WILD-TYPE 76 27 27
D21V6, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  N0           15             76
  N1            3             27
  N2            7             27
                vv
clus              M0  M1 M1A
  SDK1 MUTATED    21   3   0
  SDK1 WILD-TYPE 109  18   1
D21V7, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  M0            21            109
  M1             3             18
  M1A            0              1
                vv
clus              I II III IV
  SDK1 MUTATED    3 11   7  2
  SDK1 WILD-TYPE 27 46  37 19
D21V8, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  I              3             27
  II            11             46
  III            7             37
  IV             2             19
                vv
clus              R0  R1  R2  RX
  SDK1 MUTATED    21   0   1   0
  SDK1 WILD-TYPE 108   1  18   1
D21V9, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  R0           21            108
  R1            0              1
  R2            1             18
  RX            0              1
D21V10, continuous

Clustering(22) Variable = SOX9 MUTATION ANALYSIS
D22V1, survival
                sevent
clus2             0  1
  SOX9 MUTATED    1  1
  SOX9 WILD-TYPE 67 10
  SOX9 MUTATED SOX9 WILD-TYPE 
             2             77 
  SOX9 MUTATED SOX9 WILD-TYPE 
             1             10 
$`SOX9 MUTATED`
TCGA-AA-3939 TCGA-AA-A03F 
        0.99        18.02 

$`SOX9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        40.93        16.31         0.95 

  SOX9 MUTATED SOX9 WILD-TYPE 
          0.99           0.92 
  SOX9 MUTATED SOX9 WILD-TYPE 
         18.02          51.95 
  SOX9 MUTATED SOX9 WILD-TYPE 
         9.505         12.000 
[1] "1.0 - 18.0 (9.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
[1] "Remove cluster labels:" "SOX9 MUTATED"          
clus
  SOX9 MUTATED SOX9 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03J     TCGA-AY-4070 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AY-4071 
"SOX9 WILD-TYPE" 
D22V2, continuous
D22V3, binary
                cls
clus              0  1
  SOX9 MUTATED    5  4
  SOX9 WILD-TYPE 72 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      5    4
  SOX9 WILD-TYPE   72   74
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  FEMALE            5             72
  MALE              4             74
D22V4, binary
                cls
clus               0   1
  SOX9 MUTATED     8   1
  SOX9 WILD-TYPE 120  23
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      8    1
  SOX9 WILD-TYPE  120   23
                               clus
vv                              SOX9 MUTATED SOX9 WILD-TYPE
  COLON ADENOCARCINOMA                     8            120
  COLON MUCINOUS ADENOCARCINOMA            1             23
                vv
clus             T1 T2 T3 T4
  SOX9 MUTATED    0  0  9  0
  SOX9 WILD-TYPE  4 33 94 14
D22V5, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  T1            0              4
  T2            0             33
  T3            9             94
  T4            0             14
                vv
clus             N0 N1 N2
  SOX9 MUTATED    6  1  2
  SOX9 WILD-TYPE 85 29 32
D22V6, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  N0            6             85
  N1            1             29
  N2            2             32
                vv
clus              M0  M1 M1A
  SOX9 MUTATED     8   1   0
  SOX9 WILD-TYPE 122  20   1
D22V7, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  M0             8            122
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  SOX9 MUTATED    0  6   2  1
  SOX9 WILD-TYPE 30 51  42 20
D22V8, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  I              0             30
  II             6             51
  III            2             42
  IV             1             20
                vv
clus              R0  R1  R2  RX
  SOX9 MUTATED     8   0   1   0
  SOX9 WILD-TYPE 121   1  18   1
D22V9, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  R0            8            121
  R1            0              1
  R2            1             18
  RX            0              1
D22V10, continuous

Clustering(23) Variable = DMD MUTATION ANALYSIS
D23V1, survival
               sevent
clus2            0  1
  DMD MUTATED   15  3
  DMD WILD-TYPE 53  8
  DMD MUTATED DMD WILD-TYPE 
           18            61 
  DMD MUTATED DMD WILD-TYPE 
            3             8 
$`DMD MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 TCGA-AA-3846 
       16.54        14.70        10.92         1.02         1.02         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        30.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A024 
        4.01        20.98        38.07         1.02        33.04        39.06 

$`DMD WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 
       13.91        17.19        17.79        14.37        15.52         9.14 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       12.00        12.00        13.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  DMD MUTATED DMD WILD-TYPE 
         0.99          0.92 
  DMD MUTATED DMD WILD-TYPE 
        39.06         51.95 
  DMD MUTATED DMD WILD-TYPE 
        7.465        12.000 
[1] "1.0 - 39.1 (7.5)"  "0.9 - 52.0 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
D23V3, binary
               cls
clus             0  1
  DMD MUTATED   17 10
  DMD WILD-TYPE 60 68
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     17   10
  DMD WILD-TYPE   60   68
        clus
vv       DMD MUTATED DMD WILD-TYPE
  FEMALE          17            60
  MALE            10            68
D23V4, binary
               cls
clus              0   1
  DMD MUTATED    18   9
  DMD WILD-TYPE 110  15
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     18    9
  DMD WILD-TYPE  110   15
                               clus
vv                              DMD MUTATED DMD WILD-TYPE
  COLON ADENOCARCINOMA                   18           110
  COLON MUCINOUS ADENOCARCINOMA           9            15
               vv
clus            T1 T2 T3 T4
  DMD MUTATED    0  2 20  4
  DMD WILD-TYPE  4 31 83 10
D23V5, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  T1           0             4
  T2           2            31
  T3          20            83
  T4           4            10
               vv
clus            N0 N1 N2
  DMD MUTATED   15  7  5
  DMD WILD-TYPE 76 23 29
D23V6, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  N0          15            76
  N1           7            23
  N2           5            29
               vv
clus             M0  M1 M1A
  DMD MUTATED    26   0   0
  DMD WILD-TYPE 104  21   1
D23V7, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  M0           26           104
  M1            0            21
  M1A           0             1
               vv
clus             I II III IV
  DMD MUTATED    0 14  12  0
  DMD WILD-TYPE 30 43  32 21
D23V8, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  I             0            30
  II           14            43
  III          12            32
  IV            0            21
               vv
clus             R0  R1  R2  RX
  DMD MUTATED    24   0   0   0
  DMD WILD-TYPE 105   1  19   1
D23V9, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  R0          24           105
  R1           0             1
  R2           0            19
  RX           0             1
D23V10, continuous

Clustering(24) Variable = CNTN6 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  CNTN6 MUTATED    8  2
  CNTN6 WILD-TYPE 60  9
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             10              69 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
              2               9 
$`CNTN6 MUTATED`
TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 
        0.99         0.99         0.99         4.01         0.99        20.98 
TCGA-AA-A017 TCGA-AA-A01S TCGA-AA-A03J TCGA-AY-4070 
       15.02         1.02        40.93        16.31 

$`CNTN6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D 
       27.02        27.02        17.00        14.99        21.99         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4071 
       39.95        18.02         0.95 

  CNTN6 MUTATED CNTN6 WILD-TYPE 
           0.99            0.92 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          40.93           51.95 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          2.515          12.000 
[1] "1.0 - 40.9 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
[1] "hr=" "1.7"
D24V2, continuous
D24V3, binary
                 cls
clus               0  1
  CNTN6 MUTATED   11  4
  CNTN6 WILD-TYPE 66 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     11    4
  CNTN6 WILD-TYPE   66   74
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  FEMALE            11              66
  MALE               4              74
D24V4, binary
                 cls
clus                0   1
  CNTN6 MUTATED    12   3
  CNTN6 WILD-TYPE 116  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     12    3
  CNTN6 WILD-TYPE  116   21
                               clus
vv                              CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  CNTN6 MUTATED    1  3  8  3
  CNTN6 WILD-TYPE  3 30 95 11
D24V5, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  T1             1               3
  T2             3              30
  T3             8              95
  T4             3              11
                 vv
clus              N0 N1 N2
  CNTN6 MUTATED   12  2  1
  CNTN6 WILD-TYPE 79 28 33
D24V6, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  N0            12              79
  N1             2              28
  N2             1              33
                 vv
clus               M0  M1 M1A
  CNTN6 MUTATED    15   0   0
  CNTN6 WILD-TYPE 115  21   1
D24V7, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  M0             15             115
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  CNTN6 MUTATED    4  8   3  0
  CNTN6 WILD-TYPE 26 49  41 21
D24V8, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  I               4              26
  II              8              49
  III             3              41
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  CNTN6 MUTATED    13   1   0   0
  CNTN6 WILD-TYPE 116   0  19   1
D24V9, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  R0            13             116
  R1             1               0
  R2             0              19
  RX             0               1
D24V10, continuous

Clustering(25) Variable = GABRA5 MUTATION ANALYSIS
D25V1, survival
                  sevent
clus2               0  1
  GABRA5 MUTATED    3  2
  GABRA5 WILD-TYPE 65  9
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               5               74 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               2                9 
$`GABRA5 MUTATED`
TCGA-AA-3679 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01P 
        0.99         4.01        20.98        15.02        38.07 

$`GABRA5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  GABRA5 MUTATED GABRA5 WILD-TYPE 
            0.99             0.92 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           38.07            51.95 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           15.02            11.46 
[1] "1.0 - 38.1 (15.0)" "0.9 - 52.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
[1] "hr=" "2.9"
D25V2, continuous
D25V3, binary
                  cls
clus                0  1
  GABRA5 MUTATED    5  3
  GABRA5 WILD-TYPE 72 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      5    3
  GABRA5 WILD-TYPE   72   75
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  FEMALE              5               72
  MALE                3               75
D25V4, binary
                  cls
clus                 0   1
  GABRA5 MUTATED     7   1
  GABRA5 WILD-TYPE 121  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      7    1
  GABRA5 WILD-TYPE  121   23
                               clus
vv                              GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus               T1 T2 T3 T4
  GABRA5 MUTATED    0  1  5  2
  GABRA5 WILD-TYPE  4 32 98 12
D25V5, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              5               98
  T4              2               12
                  vv
clus               N0 N1 N2
  GABRA5 MUTATED    5  2  1
  GABRA5 WILD-TYPE 86 28 33
D25V6, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  N0              5               86
  N1              2               28
  N2              1               33
                  vv
clus                M0  M1 M1A
  GABRA5 MUTATED     7   1   0
  GABRA5 WILD-TYPE 123  20   1
D25V7, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  M0               7              123
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  GABRA5 MUTATED    1  4   2  1
  GABRA5 WILD-TYPE 29 53  42 20
D25V8, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  I                1               29
  II               4               53
  III              2               42
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  GABRA5 MUTATED     7   0   1   0
  GABRA5 WILD-TYPE 122   1  18   1
D25V9, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  R0              7              122
  R1              0                1
  R2              1               18
  RX              0                1
D25V10, continuous

Clustering(26) Variable = OR2M4 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2              0  1
  OR2M4 MUTATED    5  0
  OR2M4 WILD-TYPE 63 11
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              5              74 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              0              11 
$`OR2M4 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3986 TCGA-AA-A010 TCGA-AA-A02O 
        0.99         0.99         0.99        20.98         0.92 

$`OR2M4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.92            0.92 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          20.98           51.95 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.99           12.51 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D26V2, continuous
D26V3, binary
                 cls
clus               0  1
  OR2M4 MUTATED    5  3
  OR2M4 WILD-TYPE 72 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      5    3
  OR2M4 WILD-TYPE   72   75
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  FEMALE             5              72
  MALE               3              75
D26V4, binary
                 cls
clus                0   1
  OR2M4 MUTATED     8   0
  OR2M4 WILD-TYPE 120  24
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  120   24
                               clus
vv                              OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             0              24
                 vv
clus              T1 T2 T3 T4
  OR2M4 MUTATED    0  1  6  1
  OR2M4 WILD-TYPE  4 32 97 13
D26V5, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             6              97
  T4             1              13
                 vv
clus              N0 N1 N2
  OR2M4 MUTATED    5  1  2
  OR2M4 WILD-TYPE 86 29 32
D26V6, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  N0             5              86
  N1             1              29
  N2             2              32
                 vv
clus               M0  M1 M1A
  OR2M4 MUTATED     7   1   0
  OR2M4 WILD-TYPE 123  20   1
D26V7, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  M0              7             123
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  OR2M4 MUTATED    1  4   2  1
  OR2M4 WILD-TYPE 29 53  42 20
D26V8, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  I               1              29
  II              4              53
  III             2              42
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  OR2M4 MUTATED     8   0   0   0
  OR2M4 WILD-TYPE 121   1  19   1
D26V9, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  R0             8             121
  R1             0               1
  R2             0              19
  RX             0               1
D26V10, continuous

Clustering(27) Variable = OR6N1 MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  OR6N1 MUTATED    5  1
  OR6N1 WILD-TYPE 63 10
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              6              73 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              1              10 
$`OR6N1 MUTATED`
TCGA-AA-3710 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A01P TCGA-AA-A01V 
        1.02         0.99         1.02        30.02        38.07        35.01 

$`OR6N1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02         1.02        35.01         1.02        33.04        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  OR6N1 MUTATED OR6N1 WILD-TYPE 
           0.99            0.92 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          38.07           51.95 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          15.52           12.00 
[1] "1.0 - 38.1 (15.5)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
                 cls
clus               0  1
  OR6N1 MUTATED    4  4
  OR6N1 WILD-TYPE 73 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      4    4
  OR6N1 WILD-TYPE   73   74
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  FEMALE             4              73
  MALE               4              74
D27V4, binary
                 cls
clus                0   1
  OR6N1 MUTATED     7   1
  OR6N1 WILD-TYPE 121  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      7    1
  OR6N1 WILD-TYPE  121   23
                               clus
vv                              OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus              T1 T2 T3 T4
  OR6N1 MUTATED    0  2  6  0
  OR6N1 WILD-TYPE  4 31 97 14
D27V5, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             6              97
  T4             0              14
                 vv
clus              N0 N1 N2
  OR6N1 MUTATED    5  2  1
  OR6N1 WILD-TYPE 86 28 33
D27V6, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  N0             5              86
  N1             2              28
  N2             1              33
                 vv
clus               M0  M1 M1A
  OR6N1 MUTATED     6   1   0
  OR6N1 WILD-TYPE 124  20   1
D27V7, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  M0              6             124
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  OR6N1 MUTATED    1  3   2  1
  OR6N1 WILD-TYPE 29 54  42 20
D27V8, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  I               1              29
  II              3              54
  III             2              42
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  OR6N1 MUTATED     6   0   1   0
  OR6N1 WILD-TYPE 123   1  18   1
D27V9, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  R0             6             123
  R1             0               1
  R2             1              18
  RX             0               1
D27V10, continuous

Clustering(28) Variable = PCDH9 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  PCDH9 MUTATED   10  2
  PCDH9 WILD-TYPE 58  9
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             12              67 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
              2               9 
$`PCDH9 MUTATED`
TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3939 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01K 
        1.02         1.02         4.01        17.00        20.98        13.02 

$`PCDH9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3837 
        1.02         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  PCDH9 MUTATED PCDH9 WILD-TYPE 
           0.99            0.92 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
          20.98           51.95 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
           1.02           13.91 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
[1] "hr=" "2.6"
D28V2, continuous
D28V3, binary
                 cls
clus               0  1
  PCDH9 MUTATED    6 10
  PCDH9 WILD-TYPE 71 68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED      6   10
  PCDH9 WILD-TYPE   71   68
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  FEMALE             6              71
  MALE              10              68
D28V4, binary
                 cls
clus                0   1
  PCDH9 MUTATED    13   3
  PCDH9 WILD-TYPE 115  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     13    3
  PCDH9 WILD-TYPE  115   21
                               clus
vv                              PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON ADENOCARCINOMA                     13             115
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  PCDH9 MUTATED    0  2 12  2
  PCDH9 WILD-TYPE  4 31 91 12
D28V5, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  T1             0               4
  T2             2              31
  T3            12              91
  T4             2              12
                 vv
clus              N0 N1 N2
  PCDH9 MUTATED   11  2  3
  PCDH9 WILD-TYPE 80 28 31
D28V6, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  N0            11              80
  N1             2              28
  N2             3              31
                 vv
clus               M0  M1 M1A
  PCDH9 MUTATED    14   1   0
  PCDH9 WILD-TYPE 116  20   1
D28V7, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  M0             14             116
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  PCDH9 MUTATED    0 10   4  1
  PCDH9 WILD-TYPE 30 47  40 20
D28V8, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  I               0              30
  II             10              47
  III             4              40
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  PCDH9 MUTATED    13   0   1   0
  PCDH9 WILD-TYPE 116   1  18   1
D28V9, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  R0            13             116
  R1             0               1
  R2             1              18
  RX             0               1
D28V10, continuous

Clustering(29) Variable = TXNDC3 MUTATION ANALYSIS
D29V1, survival
                  sevent
clus2               0  1
  TXNDC3 MUTATED    5  0
  TXNDC3 WILD-TYPE 63 11
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               5               74 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               0               11 
$`TXNDC3 MUTATED`
TCGA-AA-3811 TCGA-AA-A00D TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01Z 
        0.99        19.00        21.99        20.98        20.98 

$`TXNDC3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
            0.99             0.92 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           21.99            51.95 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           20.98            10.03 
[1] "1.0 - 22.0 (21.0)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D29V2, continuous
D29V3, binary
                  cls
clus                0  1
  TXNDC3 MUTATED    6  4
  TXNDC3 WILD-TYPE 71 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      6    4
  TXNDC3 WILD-TYPE   71   74
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  FEMALE              6               71
  MALE                4               74
D29V4, binary
                  cls
clus                 0   1
  TXNDC3 MUTATED     8   2
  TXNDC3 WILD-TYPE 120  22
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      8    2
  TXNDC3 WILD-TYPE  120   22
                               clus
vv                              TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              2               22
                  vv
clus               T1 T2 T3 T4
  TXNDC3 MUTATED    0  2  7  1
  TXNDC3 WILD-TYPE  4 31 96 13
D29V5, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              7               96
  T4              1               13
                  vv
clus               N0 N1 N2
  TXNDC3 MUTATED    7  1  2
  TXNDC3 WILD-TYPE 84 29 32
D29V6, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  N0              7               84
  N1              1               29
  N2              2               32
                  vv
clus                M0  M1 M1A
  TXNDC3 MUTATED    10   0   0
  TXNDC3 WILD-TYPE 120  21   1
D29V7, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  M0              10              120
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  TXNDC3 MUTATED    2  5   3  0
  TXNDC3 WILD-TYPE 28 52  41 21
D29V8, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  I                2               28
  II               5               52
  III              3               41
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  TXNDC3 MUTATED     9   0   0   0
  TXNDC3 WILD-TYPE 120   1  19   1
D29V9, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  R0              9              120
  R1              0                1
  R2              0               19
  RX              0                1
D29V10, continuous

Clustering(30) Variable = MGC26647 MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                 0  1
  MGC26647 MUTATED    3  1
  MGC26647 WILD-TYPE 65 10
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 4                 75 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 1                 10 
$`MGC26647 MUTATED`
TCGA-AA-3811 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02W 
        0.99         4.01        20.98        40.96 

$`MGC26647 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  MGC26647 MUTATED MGC26647 WILD-TYPE 
              0.99               0.92 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
             40.96              51.95 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
            12.495             12.000 
[1] "1.0 - 41.0 (12.5)" "0.9 - 52.0 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071 
"MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071 
"MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071 
"MGC26647 WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
                    cls
clus                  0  1
  MGC26647 MUTATED    5  2
  MGC26647 WILD-TYPE 72 76
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    2
  MGC26647 WILD-TYPE   72   76
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  FEMALE                5                 72
  MALE                  2                 76
D30V4, binary
                    cls
clus                   0   1
  MGC26647 MUTATED     5   2
  MGC26647 WILD-TYPE 123  22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    2
  MGC26647 WILD-TYPE  123   22
                               clus
vv                              MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON ADENOCARCINOMA                         5                123
  COLON MUCINOUS ADENOCARCINOMA                2                 22
                    vv
clus                  T1  T2  T3  T4
  MGC26647 MUTATED     0   2   3   2
  MGC26647 WILD-TYPE   4  31 100  12
D30V5, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  T1                0                  4
  T2                2                 31
  T3                3                100
  T4                2                 12
                    vv
clus                 N0 N1 N2
  MGC26647 MUTATED    6  0  1
  MGC26647 WILD-TYPE 85 30 33
D30V6, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  N0                6                 85
  N1                0                 30
  N2                1                 33
                    vv
clus                  M0  M1 M1A
  MGC26647 MUTATED     7   0   0
  MGC26647 WILD-TYPE 123  21   1
D30V7, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  M0                 7                123
  M1                 0                 21
  M1A                0                  1
                    vv
clus                  I II III IV
  MGC26647 MUTATED    2  4   1  0
  MGC26647 WILD-TYPE 28 53  43 21
D30V8, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  I                  2                 28
  II                 4                 53
  III                1                 43
  IV                 0                 21
                    vv
clus                  R0  R1  R2  RX
  MGC26647 MUTATED     7   0   0   0
  MGC26647 WILD-TYPE 122   1  19   1
D30V9, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  R0                7                122
  R1                0                  1
  R2                0                 19
  RX                0                  1
D30V10, continuous

Clustering(31) Variable = FAM22F MUTATION ANALYSIS
D31V1, survival
                  sevent
clus2               0  1
  FAM22F MUTATED    2  1
  FAM22F WILD-TYPE 66 10
  FAM22F MUTATED FAM22F WILD-TYPE 
               3               76 
  FAM22F MUTATED FAM22F WILD-TYPE 
               1               10 
$`FAM22F MUTATED`
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         1.02         4.01 

$`FAM22F WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  FAM22F MUTATED FAM22F WILD-TYPE 
            0.99             0.92 
  FAM22F MUTATED FAM22F WILD-TYPE 
            4.01            51.95 
  FAM22F MUTATED FAM22F WILD-TYPE 
            1.02            12.51 
[1] "1.0 - 4.0 (1.0)"   "0.9 - 52.0 (12.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
[1] "hr=" "6.1"
D31V2, continuous
D31V3, binary
                  cls
clus                0  1
  FAM22F MUTATED    0  8
  FAM22F WILD-TYPE 77 70
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      0    8
  FAM22F WILD-TYPE   77   70
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  FEMALE              0               77
  MALE                8               70
D31V4, binary
                  cls
clus                 0   1
  FAM22F MUTATED     7   1
  FAM22F WILD-TYPE 121  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      7    1
  FAM22F WILD-TYPE  121   23
                               clus
vv                              FAM22F MUTATED FAM22F WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus                T1  T2  T3  T4
  FAM22F MUTATED     0   3   2   3
  FAM22F WILD-TYPE   4  30 101  11
D31V5, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  T1              0                4
  T2              3               30
  T3              2              101
  T4              3               11
                  vv
clus               N0 N1 N2
  FAM22F MUTATED    4  2  2
  FAM22F WILD-TYPE 87 28 32
D31V6, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  N0              4               87
  N1              2               28
  N2              2               32
                  vv
clus                M0  M1 M1A
  FAM22F MUTATED     4   3   0
  FAM22F WILD-TYPE 126  18   1
D31V7, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  M0               4              126
  M1               3               18
  M1A              0                1
                  vv
clus                I II III IV
  FAM22F MUTATED    2  1   1  3
  FAM22F WILD-TYPE 28 56  43 18
D31V8, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  I                2               28
  II               1               56
  III              1               43
  IV               3               18
                  vv
clus                R0  R1  R2  RX
  FAM22F MUTATED     4   0   3   0
  FAM22F WILD-TYPE 125   1  16   1
D31V9, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  R0              4              125
  R1              0                1
  R2              3               16
  RX              0                1
D31V10, continuous

Clustering(32) Variable = ACVR2A MUTATION ANALYSIS
D32V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    6  0
  ACVR2A WILD-TYPE 62 11
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               6               73 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               0               11 
$`ACVR2A MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A01V TCGA-AA-A02F 
       16.54         1.02         1.02        20.98        35.01        39.95 

$`ACVR2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        39.06        51.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            1.02             0.92 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           39.95            51.95 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           18.76            10.92 
[1] "1.0 - 40.0 (18.8)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
[1] "hr="   "8e+07"
D32V2, continuous
D32V3, binary
                  cls
clus                0  1
  ACVR2A MUTATED    7  1
  ACVR2A WILD-TYPE 70 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      7    1
  ACVR2A WILD-TYPE   70   77
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              7               70
  MALE                1               77
D32V4, binary
                  cls
clus                 0   1
  ACVR2A MUTATED     7   1
  ACVR2A WILD-TYPE 121  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      7    1
  ACVR2A WILD-TYPE  121   23
                               clus
vv                              ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus               T1 T2 T3 T4
  ACVR2A MUTATED    0  1  6  1
  ACVR2A WILD-TYPE  4 32 97 13
D32V5, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              0                4
  T2              1               32
  T3              6               97
  T4              1               13
                  vv
clus               N0 N1 N2
  ACVR2A MUTATED    6  2  0
  ACVR2A WILD-TYPE 85 28 34
D32V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              6               85
  N1              2               28
  N2              0               34
                  vv
clus                M0  M1 M1A
  ACVR2A MUTATED     7   1   0
  ACVR2A WILD-TYPE 123  20   1
D32V7, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  M0               7              123
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  ACVR2A MUTATED    1  5   1  1
  ACVR2A WILD-TYPE 29 52  43 20
D32V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  I                1               29
  II               5               52
  III              1               43
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  ACVR2A MUTATED     6   0   1   0
  ACVR2A WILD-TYPE 123   1  18   1
D32V9, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  R0              6              123
  R1              0                1
  R2              1               18
  RX              0                1
D32V10, continuous

Clustering(33) Variable = TCF7L2 MUTATION ANALYSIS
D33V1, survival
                  sevent
clus2               0  1
  TCF7L2 MUTATED    5  0
  TCF7L2 WILD-TYPE 63 11
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               5               74 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               0               11 
$`TCF7L2 MUTATED`
TCGA-AA-3977 TCGA-AA-A00K TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01T 
        1.02        18.02        20.98        12.00        33.04 

$`TCF7L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
            1.02             0.92 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
           33.04            51.95 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
           18.02            10.03 
[1] "1.0 - 33.0 (18.0)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D33V2, continuous
D33V3, binary
                  cls
clus                0  1
  TCF7L2 MUTATED    7  4
  TCF7L2 WILD-TYPE 70 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      7    4
  TCF7L2 WILD-TYPE   70   74
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  FEMALE              7               70
  MALE                4               74
D33V4, binary
                  cls
clus                 0   1
  TCF7L2 MUTATED    11   0
  TCF7L2 WILD-TYPE 117  24
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     11    0
  TCF7L2 WILD-TYPE  117   24
                               clus
vv                              TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON ADENOCARCINOMA                      11              117
  COLON MUCINOUS ADENOCARCINOMA              0               24
                  vv
clus               T1 T2 T3 T4
  TCF7L2 MUTATED    0  3  6  2
  TCF7L2 WILD-TYPE  4 30 97 12
D33V5, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              6               97
  T4              2               12
                  vv
clus               N0 N1 N2
  TCF7L2 MUTATED    7  2  2
  TCF7L2 WILD-TYPE 84 28 32
D33V6, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  N0              7               84
  N1              2               28
  N2              2               32
                  vv
clus                M0  M1 M1A
  TCF7L2 MUTATED     9   1   0
  TCF7L2 WILD-TYPE 121  20   1
D33V7, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  M0               9              121
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  TCF7L2 MUTATED    1  5   3  1
  TCF7L2 WILD-TYPE 29 52  41 20
D33V8, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  I                1               29
  II               5               52
  III              3               41
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  TCF7L2 MUTATED     9   0   1   0
  TCF7L2 WILD-TYPE 120   1  18   1
D33V9, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  R0              9              120
  R1              0                1
  R2              1               18
  RX              0                1
D33V10, continuous

Clustering(34) Variable = AFF2 MUTATION ANALYSIS
D34V1, survival
                sevent
clus2             0  1
  AFF2 MUTATED    7  1
  AFF2 WILD-TYPE 61 10
  AFF2 MUTATED AFF2 WILD-TYPE 
             8             71 
  AFF2 MUTATED AFF2 WILD-TYPE 
             1             10 
$`AFF2 MUTATED`
TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3846 TCGA-AA-3949 TCGA-AA-A00N 
       14.70         9.14         8.09         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02Y 
       20.98        39.95 

$`AFF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
       10.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        18.02        40.93        16.31         0.95 

  AFF2 MUTATED AFF2 WILD-TYPE 
          0.99           0.92 
  AFF2 MUTATED AFF2 WILD-TYPE 
         39.95          51.95 
  AFF2 MUTATED AFF2 WILD-TYPE 
         8.615         12.000 
[1] "1.0 - 40.0 (8.6)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
[1] "hr=" "1.3"
D34V2, continuous
D34V3, binary
                cls
clus              0  1
  AFF2 MUTATED    6  9
  AFF2 WILD-TYPE 71 69
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED      6    9
  AFF2 WILD-TYPE   71   69
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  FEMALE            6             71
  MALE              9             69
D34V4, binary
                cls
clus               0   1
  AFF2 MUTATED    10   5
  AFF2 WILD-TYPE 118  19
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     10    5
  AFF2 WILD-TYPE  118   19
                               clus
vv                              AFF2 MUTATED AFF2 WILD-TYPE
  COLON ADENOCARCINOMA                    10            118
  COLON MUCINOUS ADENOCARCINOMA            5             19
                vv
clus             T1 T2 T3 T4
  AFF2 MUTATED    0  1 11  2
  AFF2 WILD-TYPE  4 32 92 12
D34V5, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  T1            0              4
  T2            1             32
  T3           11             92
  T4            2             12
                vv
clus             N0 N1 N2
  AFF2 MUTATED   10  3  2
  AFF2 WILD-TYPE 81 27 32
D34V6, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  N0           10             81
  N1            3             27
  N2            2             32
                vv
clus              M0  M1 M1A
  AFF2 MUTATED    15   0   0
  AFF2 WILD-TYPE 115  21   1
D34V7, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  M0            15            115
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  AFF2 MUTATED    1  9   5  0
  AFF2 WILD-TYPE 29 48  39 21
D34V8, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  I              1             29
  II             9             48
  III            5             39
  IV             0             21
                vv
clus              R0  R1  R2  RX
  AFF2 MUTATED    13   0   0   0
  AFF2 WILD-TYPE 116   1  19   1
D34V9, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  R0           13            116
  R1            0              1
  R2            0             19
  RX            0              1
D34V10, continuous

Clustering(35) Variable = CNBD1 MUTATION ANALYSIS
D35V1, survival
                 sevent
clus2              0  1
  CNBD1 MUTATED    3  0
  CNBD1 WILD-TYPE 65 11
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              3              76 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              0              11 
$`CNBD1 MUTATED`
TCGA-AA-3710 TCGA-AA-3939 TCGA-AA-A010 
        1.02         0.99        20.98 

$`CNBD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           0.99            0.92 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          20.98           51.95 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D35V2, continuous
D35V3, binary
                 cls
clus               0  1
  CNBD1 MUTATED    4  2
  CNBD1 WILD-TYPE 73 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      4    2
  CNBD1 WILD-TYPE   73   76
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             4              73
  MALE               2              76
D35V4, binary
                 cls
clus                0   1
  CNBD1 MUTATED     5   1
  CNBD1 WILD-TYPE 123  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      5    1
  CNBD1 WILD-TYPE  123   23
                               clus
vv                              CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus              T1 T2 T3 T4
  CNBD1 MUTATED    0  1  4  1
  CNBD1 WILD-TYPE  4 32 99 13
D35V5, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             4              99
  T4             1              13
                 vv
clus              N0 N1 N2
  CNBD1 MUTATED    6  0  0
  CNBD1 WILD-TYPE 85 30 34
D35V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  N0             6              85
  N1             0              30
  N2             0              34
                 vv
clus               M0  M1 M1A
  CNBD1 MUTATED     6   0   0
  CNBD1 WILD-TYPE 124  21   1
D35V7, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  M0              6             124
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  CNBD1 MUTATED    1  5   0  0
  CNBD1 WILD-TYPE 29 52  44 21
D35V8, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               1              29
  II              5              52
  III             0              44
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  CNBD1 MUTATED     6   0   0   0
  CNBD1 WILD-TYPE 123   1  19   1
D35V9, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  R0             6             123
  R1             0               1
  R2             0              19
  RX             0               1
D35V10, continuous

Clustering(36) Variable = OTOL1 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  OTOL1 MUTATED    3  0
  OTOL1 WILD-TYPE 65 11
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              3              76 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              0              11 
$`OTOL1 MUTATED`
TCGA-AA-A010 TCGA-AA-A01S TCGA-AA-A03J 
       20.98         1.02        40.93 

$`OTOL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        16.31         0.95 

  OTOL1 MUTATED OTOL1 WILD-TYPE 
           1.02            0.92 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          40.93           51.95 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          20.98           11.46 
[1] "1.0 - 40.9 (21.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D36V2, continuous
D36V3, binary
                 cls
clus               0  1
  OTOL1 MUTATED    4  3
  OTOL1 WILD-TYPE 73 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      4    3
  OTOL1 WILD-TYPE   73   75
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  FEMALE             4              73
  MALE               3              75
D36V4, binary
                 cls
clus                0   1
  OTOL1 MUTATED     6   1
  OTOL1 WILD-TYPE 122  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      6    1
  OTOL1 WILD-TYPE  122   23
                               clus
vv                              OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus               T1  T2  T3  T4
  OTOL1 MUTATED     0   3   2   2
  OTOL1 WILD-TYPE   4  30 101  12
D36V5, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             2             101
  T4             2              12
                 vv
clus              N0 N1 N2
  OTOL1 MUTATED    3  3  1
  OTOL1 WILD-TYPE 88 27 33
D36V6, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  N0             3              88
  N1             3              27
  N2             1              33
                 vv
clus               M0  M1 M1A
  OTOL1 MUTATED     7   0   0
  OTOL1 WILD-TYPE 123  21   1
D36V7, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  M0              7             123
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  OTOL1 MUTATED    1  2   4  0
  OTOL1 WILD-TYPE 29 55  40 21
D36V8, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  I               1              29
  II              2              55
  III             4              40
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  OTOL1 MUTATED     7   0   0   0
  OTOL1 WILD-TYPE 122   1  19   1
D36V9, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  R0             7             122
  R1             0               1
  R2             0              19
  RX             0               1
D36V10, continuous

Clustering(37) Variable = KCNA4 MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  KCNA4 MUTATED    5  1
  KCNA4 WILD-TYPE 63 10
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              6              73 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              1              10 
$`KCNA4 MUTATED`
TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W 
        0.99         0.99         1.02         4.01        35.01        40.96 

$`KCNA4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  KCNA4 MUTATED KCNA4 WILD-TYPE 
           0.99            0.92 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          40.96           51.95 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          2.515          12.000 
[1] "1.0 - 41.0 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
                 cls
clus               0  1
  KCNA4 MUTATED    6  4
  KCNA4 WILD-TYPE 71 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      6    4
  KCNA4 WILD-TYPE   71   74
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  FEMALE             6              71
  MALE               4              74
D37V4, binary
                 cls
clus                0   1
  KCNA4 MUTATED     6   4
  KCNA4 WILD-TYPE 122  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      6    4
  KCNA4 WILD-TYPE  122   20
                               clus
vv                              KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  KCNA4 MUTATED    0  1  8  1
  KCNA4 WILD-TYPE  4 32 95 13
D37V5, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             8              95
  T4             1              13
                 vv
clus              N0 N1 N2
  KCNA4 MUTATED    7  2  1
  KCNA4 WILD-TYPE 84 28 33
D37V6, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  N0             7              84
  N1             2              28
  N2             1              33
                 vv
clus               M0  M1 M1A
  KCNA4 MUTATED    10   0   0
  KCNA4 WILD-TYPE 120  21   1
D37V7, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  KCNA4 MUTATED    1  6   3  0
  KCNA4 WILD-TYPE 29 51  41 21
D37V8, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  I               1              29
  II              6              51
  III             3              41
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  KCNA4 MUTATED     9   0   0   0
  KCNA4 WILD-TYPE 120   1  19   1
D37V9, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  R0             9             120
  R1             0               1
  R2             0              19
  RX             0               1
D37V10, continuous

Clustering(38) Variable = ISL1 MUTATION ANALYSIS
D38V1, survival
                sevent
clus2             0  1
  ISL1 MUTATED    5  0
  ISL1 WILD-TYPE 63 11
  ISL1 MUTATED ISL1 WILD-TYPE 
             5             74 
  ISL1 MUTATED ISL1 WILD-TYPE 
             0             11 
$`ISL1 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-A010 
        0.99         0.99         1.02         0.99        20.98 

$`ISL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99           0.92 
  ISL1 MUTATED ISL1 WILD-TYPE 
         20.98          51.95 
  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99          12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D38V2, continuous
D38V3, binary
                cls
clus              0  1
  ISL1 MUTATED    3  5
  ISL1 WILD-TYPE 74 73
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      3    5
  ISL1 WILD-TYPE   74   73
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  FEMALE            3             74
  MALE              5             73
D38V4, binary
                cls
clus               0   1
  ISL1 MUTATED     8   0
  ISL1 WILD-TYPE 120  24
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  120   24
                               clus
vv                              ISL1 MUTATED ISL1 WILD-TYPE
  COLON ADENOCARCINOMA                     8            120
  COLON MUCINOUS ADENOCARCINOMA            0             24
                vv
clus             T1 T2 T3 T4
  ISL1 MUTATED    0  1  6  1
  ISL1 WILD-TYPE  4 32 97 13
D38V5, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            6             97
  T4            1             13
                vv
clus             N0 N1 N2
  ISL1 MUTATED    3  4  1
  ISL1 WILD-TYPE 88 26 33
D38V6, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  N0            3             88
  N1            4             26
  N2            1             33
                vv
clus              M0  M1 M1A
  ISL1 MUTATED     7   1   0
  ISL1 WILD-TYPE 123  20   1
D38V7, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  M0             7            123
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  ISL1 MUTATED    0  3   4  1
  ISL1 WILD-TYPE 30 54  40 20
D38V8, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  I              0             30
  II             3             54
  III            4             40
  IV             1             20
                vv
clus              R0  R1  R2  RX
  ISL1 MUTATED     7   0   1   0
  ISL1 WILD-TYPE 122   1  18   1
D38V9, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  R0            7            122
  R1            0              1
  R2            1             18
  RX            0              1
D38V10, continuous

Clustering(39) Variable = MGC42105 MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                 0  1
  MGC42105 MUTATED    6  0
  MGC42105 WILD-TYPE 62 11
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 6                 73 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 0                 11 
$`MGC42105 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3842 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3977 
        0.99         1.02         1.02         0.99         0.99         1.02 

$`MGC42105 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  MGC42105 MUTATED MGC42105 WILD-TYPE 
              0.99               0.92 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
              1.02              51.95 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
             1.005             13.020 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (13.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071 
"MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071 
"MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071 
"MGC42105 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D39V2, continuous
D39V3, binary
                    cls
clus                  0  1
  MGC42105 MUTATED    6  4
  MGC42105 WILD-TYPE 71 74
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      6    4
  MGC42105 WILD-TYPE   71   74
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  FEMALE                6                 71
  MALE                  4                 74
D39V4, binary
                    cls
clus                   0   1
  MGC42105 MUTATED     8   2
  MGC42105 WILD-TYPE 120  22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      8    2
  MGC42105 WILD-TYPE  120   22
                               clus
vv                              MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON ADENOCARCINOMA                         8                120
  COLON MUCINOUS ADENOCARCINOMA                2                 22
                    vv
clus                 T1 T2 T3 T4
  MGC42105 MUTATED    1  3  6  0
  MGC42105 WILD-TYPE  3 30 97 14
D39V5, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  T1                1                  3
  T2                3                 30
  T3                6                 97
  T4                0                 14
                    vv
clus                 N0 N1 N2
  MGC42105 MUTATED    8  1  1
  MGC42105 WILD-TYPE 83 29 33
D39V6, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  N0                8                 83
  N1                1                 29
  N2                1                 33
                    vv
clus                  M0  M1 M1A
  MGC42105 MUTATED     8   0   0
  MGC42105 WILD-TYPE 122  21   1
D39V7, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  M0                 8                122
  M1                 0                 21
  M1A                0                  1
                    vv
clus                  I II III IV
  MGC42105 MUTATED    1  5   2  0
  MGC42105 WILD-TYPE 29 52  42 21
D39V8, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  I                  1                 29
  II                 5                 52
  III                2                 42
  IV                 0                 21
                    vv
clus                  R0  R1  R2  RX
  MGC42105 MUTATED     8   0   1   0
  MGC42105 WILD-TYPE 121   1  18   1
D39V9, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  R0                8                121
  R1                0                  1
  R2                1                 18
  RX                0                  1
D39V10, continuous

Clustering(40) Variable = ACOT4 MUTATION ANALYSIS
D40V1, survival
                 sevent
clus2              0  1
  ACOT4 MUTATED    2  0
  ACOT4 WILD-TYPE 66 11
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              2              77 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              0              11 
$`ACOT4 MUTATED`
TCGA-AA-3877 TCGA-AA-3939 
        0.99         0.99 

$`ACOT4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  ACOT4 MUTATED ACOT4 WILD-TYPE 
           0.99            0.92 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
           0.99           51.95 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
           0.99           12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
[1] "Remove cluster labels:" "ACOT4 MUTATED"         
clus
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3941 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952      TCGA-AA-3966 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986      TCGA-AA-A004 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AY-4071 
"ACOT4 WILD-TYPE" 
D40V2, continuous
D40V3, binary
                 cls
clus               0  1
  ACOT4 MUTATED    1  2
  ACOT4 WILD-TYPE 76 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      1    2
  ACOT4 WILD-TYPE   76   76
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  FEMALE             1              76
  MALE               2              76
D40V4, binary
                 cls
clus                0   1
  ACOT4 MUTATED     2   1
  ACOT4 WILD-TYPE 126  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      2    1
  ACOT4 WILD-TYPE  126   23
                               clus
vv                              ACOT4 MUTATED ACOT4 WILD-TYPE
  COLON ADENOCARCINOMA                      2             126
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus               T1  T2  T3  T4
  ACOT4 MUTATED     1   0   1   1
  ACOT4 WILD-TYPE   3  33 102  13
D40V5, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             1             102
  T4             1              13
                 vv
clus              N0 N1 N2
  ACOT4 MUTATED    2  0  1
  ACOT4 WILD-TYPE 89 30 33
D40V6, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  N0             2              89
  N1             0              30
  N2             1              33
                 vv
clus               M0  M1 M1A
  ACOT4 MUTATED     2   1   0
  ACOT4 WILD-TYPE 128  20   1
D40V7, multiclass
     clus
vv    ACOT4 MUTATED ACOT4 WILD-TYPE
  M0              2             128
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  ACOT4 MUTATED    1  1   0  1
  ACOT4 WILD-TYPE 29 56  44 20
D40V8, multiclass
     clus
vv    ACOT4 MUTATED ACOT4 WILD-TYPE
  I               1              29
  II              1              56
  III             0              44
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  ACOT4 MUTATED     2   0   1   0
  ACOT4 WILD-TYPE 127   1  18   1
D40V9, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  R0             2             127
  R1             0               1
  R2             1              18
  RX             0               1
D40V10, continuous

Clustering(41) Variable = CDH11 MUTATION ANALYSIS
D41V1, survival
                 sevent
clus2              0  1
  CDH11 MUTATED    8  2
  CDH11 WILD-TYPE 60  9
  CDH11 MUTATED CDH11 WILD-TYPE 
             10              69 
  CDH11 MUTATED CDH11 WILD-TYPE 
              2               9 
$`CDH11 MUTATED`
TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         0.99         0.99         1.02         4.01 
TCGA-AA-A00U TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A02Y 
       17.00        38.07         1.02        39.95 

$`CDH11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
        0.99        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        40.96        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CDH11 MUTATED CDH11 WILD-TYPE 
           0.99            0.92 
  CDH11 MUTATED CDH11 WILD-TYPE 
          39.95           51.95 
  CDH11 MUTATED CDH11 WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
                 cls
clus               0  1
  CDH11 MUTATED    5  8
  CDH11 WILD-TYPE 72 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED      5    8
  CDH11 WILD-TYPE   72   70
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  FEMALE             5              72
  MALE               8              70
D41V4, binary
                 cls
clus                0   1
  CDH11 MUTATED    11   2
  CDH11 WILD-TYPE 117  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     11    2
  CDH11 WILD-TYPE  117   22
                               clus
vv                              CDH11 MUTATED CDH11 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  CDH11 MUTATED    0  3  9  1
  CDH11 WILD-TYPE  4 30 94 13
D41V5, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             9              94
  T4             1              13
                 vv
clus              N0 N1 N2
  CDH11 MUTATED    6  4  3
  CDH11 WILD-TYPE 85 26 31
D41V6, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  N0             6              85
  N1             4              26
  N2             3              31
                 vv
clus               M0  M1 M1A
  CDH11 MUTATED    10   2   0
  CDH11 WILD-TYPE 120  19   1
D41V7, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  M0             10             120
  M1              2              19
  M1A             0               1
                 vv
clus               I II III IV
  CDH11 MUTATED    1  4   5  2
  CDH11 WILD-TYPE 29 53  39 19
D41V8, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  I               1              29
  II              4              53
  III             5              39
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  CDH11 MUTATED    10   0   2   0
  CDH11 WILD-TYPE 119   1  17   1
D41V9, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  R0            10             119
  R1             0               1
  R2             2              17
  RX             0               1
D41V10, continuous

Clustering(42) Variable = ATM MUTATION ANALYSIS
D42V1, survival
               sevent
clus2            0  1
  ATM MUTATED   10  1
  ATM WILD-TYPE 58 10
  ATM MUTATED ATM WILD-TYPE 
           11            68 
  ATM MUTATED ATM WILD-TYPE 
            1            10 
$`ATM MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3966 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02Y 
        1.02         4.01        20.98        35.01        39.95 

$`ATM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ATM MUTATED ATM WILD-TYPE 
         0.99          0.92 
  ATM MUTATED ATM WILD-TYPE 
        39.95         51.95 
  ATM MUTATED ATM WILD-TYPE 
         1.02         13.02 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 52.0 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
[1] "hr=" "1.4"
D42V2, continuous
D42V3, binary
               cls
clus             0  1
  ATM MUTATED   14  7
  ATM WILD-TYPE 63 71
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     14    7
  ATM WILD-TYPE   63   71
        clus
vv       ATM MUTATED ATM WILD-TYPE
  FEMALE          14            63
  MALE             7            71
D42V4, binary
               cls
clus              0   1
  ATM MUTATED    16   5
  ATM WILD-TYPE 112  19
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     16    5
  ATM WILD-TYPE  112   19
                               clus
vv                              ATM MUTATED ATM WILD-TYPE
  COLON ADENOCARCINOMA                   16           112
  COLON MUCINOUS ADENOCARCINOMA           5            19
               vv
clus            T1 T2 T3 T4
  ATM MUTATED    0  4 14  3
  ATM WILD-TYPE  4 29 89 11
D42V5, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  T1           0             4
  T2           4            29
  T3          14            89
  T4           3            11
               vv
clus            N0 N1 N2
  ATM MUTATED   15  2  4
  ATM WILD-TYPE 76 28 30
D42V6, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  N0          15            76
  N1           2            28
  N2           4            30
               vv
clus             M0  M1 M1A
  ATM MUTATED    19   1   0
  ATM WILD-TYPE 111  20   1
D42V7, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  M0           19           111
  M1            1            20
  M1A           0             1
               vv
clus             I II III IV
  ATM MUTATED    2 12   5  1
  ATM WILD-TYPE 28 45  39 20
D42V8, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  I             2            28
  II           12            45
  III           5            39
  IV            1            20
               vv
clus             R0  R1  R2  RX
  ATM MUTATED    17   0   1   0
  ATM WILD-TYPE 112   1  18   1
D42V9, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  R0          17           112
  R1           0             1
  R2           1            18
  RX           0             1
D42V10, continuous

Clustering(43) Variable = TPTE MUTATION ANALYSIS
D43V1, survival
                sevent
clus2             0  1
  TPTE MUTATED    6  1
  TPTE WILD-TYPE 62 10
  TPTE MUTATED TPTE WILD-TYPE 
             7             72 
  TPTE MUTATED TPTE WILD-TYPE 
             1             10 
$`TPTE MUTATED`
TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.92         0.99         1.02         4.01        20.98 
TCGA-AA-A01R 
       35.01 

$`TPTE WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  TPTE MUTATED TPTE WILD-TYPE 
          0.92           0.92 
  TPTE MUTATED TPTE WILD-TYPE 
         35.01          51.95 
  TPTE MUTATED TPTE WILD-TYPE 
          1.02          12.51 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1.7"
D43V2, continuous
D43V3, binary
                cls
clus              0  1
  TPTE MUTATED    7  4
  TPTE WILD-TYPE 70 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    4
  TPTE WILD-TYPE   70   74
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            7             70
  MALE              4             74
D43V4, binary
                cls
clus               0   1
  TPTE MUTATED     7   4
  TPTE WILD-TYPE 121  20
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    4
  TPTE WILD-TYPE  121   20
                               clus
vv                              TPTE MUTATED TPTE WILD-TYPE
  COLON ADENOCARCINOMA                     7            121
  COLON MUCINOUS ADENOCARCINOMA            4             20
                vv
clus             T1 T2 T3 T4
  TPTE MUTATED    0  2  7  2
  TPTE WILD-TYPE  4 31 96 12
D43V5, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              4
  T2            2             31
  T3            7             96
  T4            2             12
                vv
clus             N0 N1 N2
  TPTE MUTATED    6  1  4
  TPTE WILD-TYPE 85 29 30
D43V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            6             85
  N1            1             29
  N2            4             30
                vv
clus              M0  M1 M1A
  TPTE MUTATED     9   1   0
  TPTE WILD-TYPE 121  20   1
D43V7, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  M0             9            121
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  TPTE MUTATED    1  4   4  1
  TPTE WILD-TYPE 29 53  40 20
D43V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  I              1             29
  II             4             53
  III            4             40
  IV             1             20
                vv
clus              R0  R1  R2  RX
  TPTE MUTATED     9   0   1   0
  TPTE WILD-TYPE 120   1  18   1
D43V9, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  R0            9            120
  R1            0              1
  R2            1             18
  RX            0              1
D43V10, continuous

Clustering(44) Variable = BTNL8 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  BTNL8 MUTATED    1  0
  BTNL8 WILD-TYPE 67 11
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              1              78 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              0              11 
$`BTNL8 MUTATED`
TCGA-AA-3710 
        1.02 

$`BTNL8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  BTNL8 MUTATED BTNL8 WILD-TYPE 
           1.02            0.92 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
           1.02           51.95 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
[1] "Remove cluster labels:" "BTNL8 MUTATED"         
clus
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              1              78 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
D44V2, continuous
D44V3, binary
                 cls
clus               0  1
  BTNL8 MUTATED    2  1
  BTNL8 WILD-TYPE 75 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      2    1
  BTNL8 WILD-TYPE   75   77
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  FEMALE             2              75
  MALE               1              77
D44V4, binary
                 cls
clus                0   1
  BTNL8 MUTATED     2   0
  BTNL8 WILD-TYPE 126  24
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      2    0
  BTNL8 WILD-TYPE  126   24
                               clus
vv                              BTNL8 MUTATED BTNL8 WILD-TYPE
  COLON ADENOCARCINOMA                      2             126
  COLON MUCINOUS ADENOCARCINOMA             0              24
                 vv
clus               T1  T2  T3  T4
  BTNL8 MUTATED     0   1   2   0
  BTNL8 WILD-TYPE   4  32 101  14
D44V5, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             2             101
  T4             0              14
                 vv
clus              N0 N1 N2
  BTNL8 MUTATED    3  0  0
  BTNL8 WILD-TYPE 88 30 34
D44V6, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  N0             3              88
  N1             0              30
  N2             0              34
                 vv
clus               M0  M1 M1A
  BTNL8 MUTATED     3   0   0
  BTNL8 WILD-TYPE 127  21   1
D44V7, multiclass
     clus
vv    BTNL8 MUTATED BTNL8 WILD-TYPE
  M0              3             127
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  BTNL8 MUTATED    1  2   0  0
  BTNL8 WILD-TYPE 29 55  44 21
D44V8, multiclass
     clus
vv    BTNL8 MUTATED BTNL8 WILD-TYPE
  I               1              29
  II              2              55
  III             0              44
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  BTNL8 MUTATED     3   0   0   0
  BTNL8 WILD-TYPE 126   1  19   1
D44V9, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  R0             3             126
  R1             0               1
  R2             0              19
  RX             0               1
D44V10, continuous

Clustering(45) Variable = KLHL4 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED    7  3
  KLHL4 WILD-TYPE 61  8
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             10              69 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              3               8 
$`KLHL4 MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99        30.02        18.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01P TCGA-AA-A01R TCGA-AY-4070 
        0.99        38.07        35.01        16.31 

$`KLHL4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O 
       18.02        19.00        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S 
       13.02        12.00        12.00        13.02         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
       18.02        40.93         0.95 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           0.99            0.92 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          38.07           51.95 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
         17.165          10.920 
[1] "1.0 - 38.1 (17.2)" "0.9 - 52.0 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
[1] "hr=" "2.4"
D45V2, continuous
D45V3, binary
                 cls
clus               0  1
  KLHL4 MUTATED    8  4
  KLHL4 WILD-TYPE 69 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      8    4
  KLHL4 WILD-TYPE   69   74
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE             8              69
  MALE               4              74
D45V4, binary
                 cls
clus                0   1
  KLHL4 MUTATED     8   4
  KLHL4 WILD-TYPE 120  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      8    4
  KLHL4 WILD-TYPE  120   20
                               clus
vv                              KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  KLHL4 MUTATED    0  0  9  3
  KLHL4 WILD-TYPE  4 33 94 11
D45V5, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             9              94
  T4             3              11
                 vv
clus              N0 N1 N2
  KLHL4 MUTATED    7  2  3
  KLHL4 WILD-TYPE 84 28 31
D45V6, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  N0             7              84
  N1             2              28
  N2             3              31
                 vv
clus               M0  M1 M1A
  KLHL4 MUTATED    12   0   0
  KLHL4 WILD-TYPE 118  21   1
D45V7, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  M0             12             118
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  KLHL4 MUTATED    0  7   5  0
  KLHL4 WILD-TYPE 30 50  39 21
D45V8, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  I               0              30
  II              7              50
  III             5              39
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  KLHL4 MUTATED    11   1   0   0
  KLHL4 WILD-TYPE 118   0  19   1
D45V9, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  R0            11             118
  R1             1               0
  R2             0              19
  RX             0               1
D45V10, continuous

Clustering(46) Variable = ROBO1 MUTATION ANALYSIS
D46V1, survival
                 sevent
clus2              0  1
  ROBO1 MUTATED    8  1
  ROBO1 WILD-TYPE 60 10
  ROBO1 MUTATED ROBO1 WILD-TYPE 
              9              70 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
              1              10 
$`ROBO1 MUTATED`
TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-3947 TCGA-AA-3966 
       10.92         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02O 
        4.01        20.98         0.92 

$`ROBO1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  ROBO1 MUTATED ROBO1 WILD-TYPE 
           0.92            0.92 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
          20.98           51.95 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
          1.020          13.465 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (13.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
[1] "hr=" "1.6"
D46V2, continuous
D46V3, binary
                 cls
clus               0  1
  ROBO1 MUTATED    6  8
  ROBO1 WILD-TYPE 71 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED      6    8
  ROBO1 WILD-TYPE   71   70
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  FEMALE             6              71
  MALE               8              70
D46V4, binary
                 cls
clus                0   1
  ROBO1 MUTATED     7   6
  ROBO1 WILD-TYPE 121  18
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED      7    6
  ROBO1 WILD-TYPE  121   18
                               clus
vv                              ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             6              18
                 vv
clus              T1 T2 T3 T4
  ROBO1 MUTATED    0  1 10  3
  ROBO1 WILD-TYPE  4 32 93 11
D46V5, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3            10              93
  T4             3              11
                 vv
clus              N0 N1 N2
  ROBO1 MUTATED   10  2  2
  ROBO1 WILD-TYPE 81 28 32
D46V6, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  N0            10              81
  N1             2              28
  N2             2              32
                 vv
clus               M0  M1 M1A
  ROBO1 MUTATED    13   1   0
  ROBO1 WILD-TYPE 117  20   1
D46V7, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  M0             13             117
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  ROBO1 MUTATED    0 10   3  1
  ROBO1 WILD-TYPE 30 47  41 20
D46V8, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  I               0              30
  II             10              47
  III             3              41
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  ROBO1 MUTATED    12   0   1   0
  ROBO1 WILD-TYPE 117   1  18   1
D46V9, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  R0            12             117
  R1             0               1
  R2             1              18
  RX             0               1
D46V10, continuous

Clustering(47) Variable = GGT1 MUTATION ANALYSIS
D47V1, survival
                sevent
clus2             0  1
  GGT1 MUTATED    1  0
  GGT1 WILD-TYPE 67 11
  GGT1 MUTATED GGT1 WILD-TYPE 
             1             78 
  GGT1 MUTATED GGT1 WILD-TYPE 
             0             11 
$`GGT1 MUTATED`
TCGA-AA-A01V 
       35.01 

$`GGT1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z 
        1.02        35.01         1.02        33.04        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  GGT1 MUTATED GGT1 WILD-TYPE 
         35.01           0.92 
  GGT1 MUTATED GGT1 WILD-TYPE 
         35.01          51.95 
  GGT1 MUTATED GGT1 WILD-TYPE 
         35.01          11.46 
[1] "35.0 - 35.0 (35.0)" "0.9 - 52.0 (11.5)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             1             78 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D47V2, continuous
D47V3, binary
                cls
clus              0  1
  GGT1 MUTATED    2  1
  GGT1 WILD-TYPE 75 77
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      2    1
  GGT1 WILD-TYPE   75   77
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  FEMALE            2             75
  MALE              1             77
D47V4, binary
                cls
clus               0   1
  GGT1 MUTATED     2   0
  GGT1 WILD-TYPE 126  24
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      2    0
  GGT1 WILD-TYPE  126   24
                               clus
vv                              GGT1 MUTATED GGT1 WILD-TYPE
  COLON ADENOCARCINOMA                     2            126
  COLON MUCINOUS ADENOCARCINOMA            0             24
                vv
clus              T1  T2  T3  T4
  GGT1 MUTATED     0   1   2   0
  GGT1 WILD-TYPE   4  32 101  14
D47V5, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            2            101
  T4            0             14
                vv
clus             N0 N1 N2
  GGT1 MUTATED    3  0  0
  GGT1 WILD-TYPE 88 30 34
D47V6, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  N0            3             88
  N1            0             30
  N2            0             34
                vv
clus              M0  M1 M1A
  GGT1 MUTATED     3   0   0
  GGT1 WILD-TYPE 127  21   1
D47V7, multiclass
     clus
vv    GGT1 MUTATED GGT1 WILD-TYPE
  M0             3            127
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  GGT1 MUTATED    1  2   0  0
  GGT1 WILD-TYPE 29 55  44 21
D47V8, multiclass
     clus
vv    GGT1 MUTATED GGT1 WILD-TYPE
  I              1             29
  II             2             55
  III            0             44
  IV             0             21
                vv
clus              R0  R1  R2  RX
  GGT1 MUTATED     3   0   0   0
  GGT1 WILD-TYPE 126   1  19   1
D47V9, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  R0            3            126
  R1            0              1
  R2            0             19
  RX            0              1
D47V10, continuous

Clustering(48) Variable = FLG MUTATION ANALYSIS
D48V1, survival
               sevent
clus2            0  1
  FLG MUTATED   12  4
  FLG WILD-TYPE 56  7
  FLG MUTATED FLG WILD-TYPE 
           16            63 
  FLG MUTATED FLG WILD-TYPE 
            4             7 
$`FLG MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3952 
        9.14         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A01V 
        1.02         4.01         0.99        20.98        35.01        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AY-4071 
       20.98        39.06        51.95         0.95 

$`FLG WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02        38.07         1.02         1.02        33.04        26.01 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
       18.02        40.93        16.31 

  FLG MUTATED FLG WILD-TYPE 
         0.95          0.92 
  FLG MUTATED FLG WILD-TYPE 
        51.95         40.96 
  FLG MUTATED FLG WILD-TYPE 
        2.515        13.020 
[1] "0.9 - 52.0 (2.5)"  "0.9 - 41.0 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
[1] "hr=" "2.1"
D48V2, continuous
D48V3, binary
               cls
clus             0  1
  FLG MUTATED   14 12
  FLG WILD-TYPE 63 66
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     14   12
  FLG WILD-TYPE   63   66
        clus
vv       FLG MUTATED FLG WILD-TYPE
  FEMALE          14            63
  MALE            12            66
D48V4, binary
               cls
clus              0   1
  FLG MUTATED    16   8
  FLG WILD-TYPE 112  16
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     16    8
  FLG WILD-TYPE  112   16
                               clus
vv                              FLG MUTATED FLG WILD-TYPE
  COLON ADENOCARCINOMA                   16           112
  COLON MUCINOUS ADENOCARCINOMA           8            16
               vv
clus            T1 T2 T3 T4
  FLG MUTATED    2  5 15  4
  FLG WILD-TYPE  2 28 88 10
D48V5, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  T1           2             2
  T2           5            28
  T3          15            88
  T4           4            10
               vv
clus            N0 N1 N2
  FLG MUTATED   20  2  4
  FLG WILD-TYPE 71 28 30
D48V6, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  N0          20            71
  N1           2            28
  N2           4            30
               vv
clus             M0  M1 M1A
  FLG MUTATED    23   1   0
  FLG WILD-TYPE 107  20   1
D48V7, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  M0           23           107
  M1            1            20
  M1A           0             1
               vv
clus             I II III IV
  FLG MUTATED    6 13   5  1
  FLG WILD-TYPE 24 44  39 20
D48V8, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  I             6            24
  II           13            44
  III           5            39
  IV            1            20
               vv
clus             R0  R1  R2  RX
  FLG MUTATED    23   0   0   0
  FLG WILD-TYPE 106   1  19   1
D48V9, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  R0          23           106
  R1           0             1
  R2           0            19
  RX           0             1
D48V10, continuous

Clustering(49) Variable = PCDHB2 MUTATION ANALYSIS
D49V1, survival
                  sevent
clus2               0  1
  PCDHB2 MUTATED    9  0
  PCDHB2 WILD-TYPE 59 11
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               9               70 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               0               11 
$`PCDHB2 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3977 
       16.54        17.19         0.99         0.99         0.99         1.02 
TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01Q 
       30.02        20.98         1.02 

$`PCDHB2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            0.99             0.92 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
           30.02            51.95 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D49V2, continuous
D49V3, binary
                  cls
clus                0  1
  PCDHB2 MUTATED    8  5
  PCDHB2 WILD-TYPE 69 73
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED      8    5
  PCDHB2 WILD-TYPE   69   73
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  FEMALE              8               69
  MALE                5               73
D49V4, binary
                  cls
clus                 0   1
  PCDHB2 MUTATED    11   2
  PCDHB2 WILD-TYPE 117  22
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     11    2
  PCDHB2 WILD-TYPE  117   22
                               clus
vv                              PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON ADENOCARCINOMA                      11              117
  COLON MUCINOUS ADENOCARCINOMA              2               22
                  vv
clus               T1 T2 T3 T4
  PCDHB2 MUTATED    0  2  9  2
  PCDHB2 WILD-TYPE  4 31 94 12
D49V5, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              9               94
  T4              2               12
                  vv
clus               N0 N1 N2
  PCDHB2 MUTATED    7  4  2
  PCDHB2 WILD-TYPE 84 26 32
D49V6, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  N0              7               84
  N1              4               26
  N2              2               32
                  vv
clus                M0  M1 M1A
  PCDHB2 MUTATED    10   2   0
  PCDHB2 WILD-TYPE 120  19   1
D49V7, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  M0              10              120
  M1               2               19
  M1A              0                1
                  vv
clus                I II III IV
  PCDHB2 MUTATED    1  5   4  1
  PCDHB2 WILD-TYPE 29 52  40 20
D49V8, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  I                1               29
  II               5               52
  III              4               40
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  PCDHB2 MUTATED    11   0   1   0
  PCDHB2 WILD-TYPE 118   1  18   1
D49V9, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  R0             11              118
  R1              0                1
  R2              1               18
  RX              0                1
D49V10, continuous

Clustering(50) Variable = POSTN MUTATION ANALYSIS
D50V1, survival
                 sevent
clus2              0  1
  POSTN MUTATED    4  2
  POSTN WILD-TYPE 64  9
  POSTN MUTATED POSTN WILD-TYPE 
              6              73 
  POSTN MUTATED POSTN WILD-TYPE 
              2               9 
$`POSTN MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01G TCGA-AA-A01R 
        1.02         1.02         1.02         4.01        12.00        35.01 

$`POSTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  POSTN MUTATED POSTN WILD-TYPE 
           1.02            0.92 
  POSTN MUTATED POSTN WILD-TYPE 
          35.01           51.95 
  POSTN MUTATED POSTN WILD-TYPE 
          2.515          13.020 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
[1] "hr=" "4"  
D50V2, continuous
D50V3, binary
                 cls
clus               0  1
  POSTN MUTATED    5  6
  POSTN WILD-TYPE 72 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED      5    6
  POSTN WILD-TYPE   72   72
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  FEMALE             5              72
  MALE               6              72
D50V4, binary
                 cls
clus                0   1
  POSTN MUTATED     7   4
  POSTN WILD-TYPE 121  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED      7    4
  POSTN WILD-TYPE  121   20
                               clus
vv                              POSTN MUTATED POSTN WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  POSTN MUTATED    0  2  8  1
  POSTN WILD-TYPE  4 31 95 13
D50V5, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  T1             0               4
  T2             2              31
  T3             8              95
  T4             1              13
                 vv
clus              N0 N1 N2
  POSTN MUTATED    9  0  2
  POSTN WILD-TYPE 82 30 32
D50V6, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  N0             9              82
  N1             0              30
  N2             2              32
                 vv
clus               M0  M1 M1A
  POSTN MUTATED    10   0   0
  POSTN WILD-TYPE 120  21   1
D50V7, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  POSTN MUTATED    1  7   2  0
  POSTN WILD-TYPE 29 50  42 21
D50V8, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  I               1              29
  II              7              50
  III             2              42
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  POSTN MUTATED     9   0   0   0
  POSTN WILD-TYPE 120   1  19   1
D50V9, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  R0             9             120
  R1             0               1
  R2             0              19
  RX             0               1
D50V10, continuous

Clustering(51) Variable = OR51V1 MUTATION ANALYSIS
D51V1, survival
                  sevent
clus2               0  1
  OR51V1 MUTATED    7  0
  OR51V1 WILD-TYPE 61 11
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               7               72 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               0               11 
$`OR51V1 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         0.99        20.98 
TCGA-AA-A01R 
       35.01 

$`OR51V1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  OR51V1 MUTATED OR51V1 WILD-TYPE 
            0.99             0.92 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
           35.01            51.95 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D51V2, continuous
D51V3, binary
                  cls
clus                0  1
  OR51V1 MUTATED    6  3
  OR51V1 WILD-TYPE 71 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      6    3
  OR51V1 WILD-TYPE   71   75
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  FEMALE              6               71
  MALE                3               75
D51V4, binary
                  cls
clus                 0   1
  OR51V1 MUTATED     4   5
  OR51V1 WILD-TYPE 124  19
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      4    5
  OR51V1 WILD-TYPE  124   19
                               clus
vv                              OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              5               19
                  vv
clus               T1 T2 T3 T4
  OR51V1 MUTATED    0  0  5  3
  OR51V1 WILD-TYPE  4 33 98 11
D51V5, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  T1              0                4
  T2              0               33
  T3              5               98
  T4              3               11
                  vv
clus               N0 N1 N2
  OR51V1 MUTATED    8  0  1
  OR51V1 WILD-TYPE 83 30 33
D51V6, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  N0              8               83
  N1              0               30
  N2              1               33
                  vv
clus                M0  M1 M1A
  OR51V1 MUTATED     9   0   0
  OR51V1 WILD-TYPE 121  21   1
D51V7, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  M0               9              121
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  OR51V1 MUTATED    0  8   1  0
  OR51V1 WILD-TYPE 30 49  43 21
D51V8, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  I                0               30
  II               8               49
  III              1               43
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  OR51V1 MUTATED     9   0   0   0
  OR51V1 WILD-TYPE 120   1  19   1
D51V9, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  R0              9              120
  R1              0                1
  R2              0               19
  RX              0                1
D51V10, continuous

Clustering(52) Variable = GRIK3 MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  GRIK3 MUTATED    5  1
  GRIK3 WILD-TYPE 63 10
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              6              73 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              1              10 
$`GRIK3 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A01I TCGA-AA-A02O 
        1.02         1.02        18.02         4.01        12.00         0.92 

$`GRIK3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  GRIK3 MUTATED GRIK3 WILD-TYPE 
           0.92            0.92 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          18.02           51.95 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          2.515          13.020 
[1] "0.9 - 18.0 (2.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
[1] "hr=" "1.9"
D52V2, continuous
D52V3, binary
                 cls
clus               0  1
  GRIK3 MUTATED    5  9
  GRIK3 WILD-TYPE 72 69
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED      5    9
  GRIK3 WILD-TYPE   72   69
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  FEMALE             5              72
  MALE               9              69
D52V4, binary
                 cls
clus                0   1
  GRIK3 MUTATED    11   3
  GRIK3 WILD-TYPE 117  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     11    3
  GRIK3 WILD-TYPE  117   21
                               clus
vv                              GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  GRIK3 MUTATED    0  4  9  1
  GRIK3 WILD-TYPE  4 29 94 13
D52V5, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  T1             0               4
  T2             4              29
  T3             9              94
  T4             1              13
                 vv
clus              N0 N1 N2
  GRIK3 MUTATED   11  2  1
  GRIK3 WILD-TYPE 80 28 33
D52V6, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  N0            11              80
  N1             2              28
  N2             1              33
                 vv
clus               M0  M1 M1A
  GRIK3 MUTATED    11   2   0
  GRIK3 WILD-TYPE 119  19   1
D52V7, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  M0             11             119
  M1              2              19
  M1A             0               1
                 vv
clus               I II III IV
  GRIK3 MUTATED    3  7   1  2
  GRIK3 WILD-TYPE 27 50  43 19
D52V8, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  I               3              27
  II              7              50
  III             1              43
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  GRIK3 MUTATED    10   0   2   0
  GRIK3 WILD-TYPE 119   1  17   1
D52V9, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  R0            10             119
  R1             0               1
  R2             2              17
  RX             0               1
D52V10, continuous

Clustering(53) Variable = LRRN3 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  LRRN3 MUTATED    6  1
  LRRN3 WILD-TYPE 62 10
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              7              72 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              1              10 
$`LRRN3 MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3941 TCGA-AA-A00E TCGA-AA-A00R TCGA-AA-A01P 
       10.92         0.99         1.02        30.02         0.99        38.07 
TCGA-AA-A01R 
       35.01 

$`LRRN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02        27.02        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  LRRN3 MUTATED LRRN3 WILD-TYPE 
           0.99            0.92 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
          38.07           51.95 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
          10.92           12.00 
[1] "1.0 - 38.1 (10.9)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
[1] "hr=" "1"  
D53V2, continuous
D53V3, binary
                 cls
clus               0  1
  LRRN3 MUTATED    5  4
  LRRN3 WILD-TYPE 72 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      5    4
  LRRN3 WILD-TYPE   72   74
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  FEMALE             5              72
  MALE               4              74
D53V4, binary
                 cls
clus                0   1
  LRRN3 MUTATED     8   1
  LRRN3 WILD-TYPE 120  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      8    1
  LRRN3 WILD-TYPE  120   23
                               clus
vv                              LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus              T1 T2 T3 T4
  LRRN3 MUTATED    0  1  6  2
  LRRN3 WILD-TYPE  4 32 97 12
D53V5, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             6              97
  T4             2              12
                 vv
clus              N0 N1 N2
  LRRN3 MUTATED    3  3  3
  LRRN3 WILD-TYPE 88 27 31
D53V6, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  N0             3              88
  N1             3              27
  N2             3              31
                 vv
clus               M0  M1 M1A
  LRRN3 MUTATED     7   1   1
  LRRN3 WILD-TYPE 123  20   0
D53V7, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  M0              7             123
  M1              1              20
  M1A             1               0
                 vv
clus               I II III IV
  LRRN3 MUTATED    1  2   4  2
  LRRN3 WILD-TYPE 29 55  40 19
D53V8, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  I               1              29
  II              2              55
  III             4              40
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  LRRN3 MUTATED     8   0   1   0
  LRRN3 WILD-TYPE 121   1  18   1
D53V9, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  R0             8             121
  R1             0               1
  R2             1              18
  RX             0               1
D53V10, continuous

Clustering(54) Variable = PRDM9 MUTATION ANALYSIS
D54V1, survival
                 sevent
clus2              0  1
  PRDM9 MUTATED    5  0
  PRDM9 WILD-TYPE 63 11
  PRDM9 MUTATED PRDM9 WILD-TYPE 
              5              74 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
              0              11 
$`PRDM9 MUTATED`
TCGA-A6-3810 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-A010 TCGA-AA-A01R 
        8.09         1.02         0.99        20.98        35.01 

$`PRDM9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  PRDM9 MUTATED PRDM9 WILD-TYPE 
           0.99            0.92 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
          35.01           51.95 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
           8.09           12.00 
[1] "1.0 - 35.0 (8.1)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D54V2, continuous
D54V3, binary
                 cls
clus               0  1
  PRDM9 MUTATED    7  4
  PRDM9 WILD-TYPE 70 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED      7    4
  PRDM9 WILD-TYPE   70   74
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  FEMALE             7              70
  MALE               4              74
D54V4, binary
                 cls
clus                0   1
  PRDM9 MUTATED     8   2
  PRDM9 WILD-TYPE 120  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED      8    2
  PRDM9 WILD-TYPE  120   22
                               clus
vv                              PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  PRDM9 MUTATED    0  1  7  3
  PRDM9 WILD-TYPE  4 32 96 11
D54V5, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             7              96
  T4             3              11
                 vv
clus              N0 N1 N2
  PRDM9 MUTATED    8  2  1
  PRDM9 WILD-TYPE 83 28 33
D54V6, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             1              33
                 vv
clus               M0  M1 M1A
  PRDM9 MUTATED    10   0   1
  PRDM9 WILD-TYPE 120  21   0
D54V7, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             1               0
                 vv
clus               I II III IV
  PRDM9 MUTATED    1  7   2  1
  PRDM9 WILD-TYPE 29 50  42 20
D54V8, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  I               1              29
  II              7              50
  III             2              42
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  PRDM9 MUTATED    11   0   0   0
  PRDM9 WILD-TYPE 118   1  19   1
D54V9, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  R0            11             118
  R1             0               1
  R2             0              19
  RX             0               1
D54V10, continuous

Clustering(55) Variable = ADAM29 MUTATION ANALYSIS
D55V1, survival
                  sevent
clus2               0  1
  ADAM29 MUTATED    6  0
  ADAM29 WILD-TYPE 62 11
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               6               73 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               0               11 
$`ADAM29 MUTATED`
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00R TCGA-AA-A02F TCGA-AA-A02W 
        0.99         1.02         1.02         0.99        39.95        40.96 

$`ADAM29 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ADAM29 MUTATED ADAM29 WILD-TYPE 
            0.99             0.92 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
           40.96            51.95 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 41.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
[1] "hr="     "9.5e+07"
D55V2, continuous
D55V3, binary
                  cls
clus                0  1
  ADAM29 MUTATED    7  2
  ADAM29 WILD-TYPE 70 76
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      7    2
  ADAM29 WILD-TYPE   70   76
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  FEMALE              7               70
  MALE                2               76
D55V4, binary
                  cls
clus                 0   1
  ADAM29 MUTATED     8   1
  ADAM29 WILD-TYPE 120  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      8    1
  ADAM29 WILD-TYPE  120   23
                               clus
vv                              ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus                T1  T2  T3  T4
  ADAM29 MUTATED     1   4   3   1
  ADAM29 WILD-TYPE   3  29 100  13
D55V5, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  T1              1                3
  T2              4               29
  T3              3              100
  T4              1               13
                  vv
clus               N0 N1 N2
  ADAM29 MUTATED    7  2  0
  ADAM29 WILD-TYPE 84 28 34
D55V6, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  N0              7               84
  N1              2               28
  N2              0               34
                  vv
clus                M0  M1 M1A
  ADAM29 MUTATED     6   1   1
  ADAM29 WILD-TYPE 124  20   0
D55V7, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  M0               6              124
  M1               1               20
  M1A              1                0
                  vv
clus                I II III IV
  ADAM29 MUTATED    4  2   0  2
  ADAM29 WILD-TYPE 26 55  44 19
D55V8, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  I                4               26
  II               2               55
  III              0               44
  IV               2               19
                  vv
clus                R0  R1  R2  RX
  ADAM29 MUTATED     7   0   1   0
  ADAM29 WILD-TYPE 122   1  18   1
D55V9, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  R0              7              122
  R1              0                1
  R2              1               18
  RX              0                1
D55V10, continuous

Clustering(56) Variable = KIAA1486 MUTATION ANALYSIS
D56V1, survival
                    sevent
clus2                 0  1
  KIAA1486 MUTATED    5  2
  KIAA1486 WILD-TYPE 63  9
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 7                 72 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 2                  9 
$`KIAA1486 MUTATED`
TCGA-AA-3848 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02O 
        0.99         1.02         4.01        20.98        35.01         0.92 
TCGA-AY-4070 
       16.31 

$`KIAA1486 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
        5.03        40.96        39.95        18.02        40.93         0.95 

  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
              0.92               0.92 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
             35.01              51.95 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
              4.01              12.00 
[1] "0.9 - 35.0 (4.0)"  "0.9 - 52.0 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071 
"KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071 
"KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071 
"KIAA1486 WILD-TYPE" 
[1] "hr=" "3.1"
D56V2, continuous
D56V3, binary
                    cls
clus                  0  1
  KIAA1486 MUTATED    5  4
  KIAA1486 WILD-TYPE 72 74
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      5    4
  KIAA1486 WILD-TYPE   72   74
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  FEMALE                5                 72
  MALE                  4                 74
D56V4, binary
                    cls
clus                   0   1
  KIAA1486 MUTATED     6   3
  KIAA1486 WILD-TYPE 122  21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      6    3
  KIAA1486 WILD-TYPE  122   21
                               clus
vv                              KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON ADENOCARCINOMA                         6                122
  COLON MUCINOUS ADENOCARCINOMA                3                 21
                    vv
clus                 T1 T2 T3 T4
  KIAA1486 MUTATED    0  0  7  2
  KIAA1486 WILD-TYPE  4 33 96 12
D56V5, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  T1                0                  4
  T2                0                 33
  T3                7                 96
  T4                2                 12
                    vv
clus                 N0 N1 N2
  KIAA1486 MUTATED    4  2  3
  KIAA1486 WILD-TYPE 87 28 31
D56V6, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  N0                4                 87
  N1                2                 28
  N2                3                 31
                    vv
clus                  M0  M1 M1A
  KIAA1486 MUTATED     9   0   0
  KIAA1486 WILD-TYPE 121  21   1
D56V7, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  M0                 9                121
  M1                 0                 21
  M1A                0                  1
                    vv
clus                  I II III IV
  KIAA1486 MUTATED    0  4   5  0
  KIAA1486 WILD-TYPE 30 53  39 21
D56V8, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  I                  0                 30
  II                 4                 53
  III                5                 39
  IV                 0                 21
                    vv
clus                  R0  R1  R2  RX
  KIAA1486 MUTATED     7   1   0   0
  KIAA1486 WILD-TYPE 122   0  19   1
D56V9, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  R0                7                122
  R1                1                  0
  R2                0                 19
  RX                0                  1
D56V10, continuous

Clustering(57) Variable = PSG8 MUTATION ANALYSIS
D57V1, survival
                sevent
clus2             0  1
  PSG8 MUTATED    2  1
  PSG8 WILD-TYPE 66 10
  PSG8 MUTATED PSG8 WILD-TYPE 
             3             76 
  PSG8 MUTATED PSG8 WILD-TYPE 
             1             10 
$`PSG8 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01X 
        1.02         4.01        26.01 

$`PSG8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PSG8 MUTATED PSG8 WILD-TYPE 
          1.02           0.92 
  PSG8 MUTATED PSG8 WILD-TYPE 
         26.01          51.95 
  PSG8 MUTATED PSG8 WILD-TYPE 
          4.01          12.00 
[1] "1.0 - 26.0 (4.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
[1] "hr=" "2.9"
D57V2, continuous
D57V3, binary
                cls
clus              0  1
  PSG8 MUTATED    4  4
  PSG8 WILD-TYPE 73 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      4    4
  PSG8 WILD-TYPE   73   74
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  FEMALE            4             73
  MALE              4             74
D57V4, binary
                cls
clus               0   1
  PSG8 MUTATED     6   2
  PSG8 WILD-TYPE 122  22
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      6    2
  PSG8 WILD-TYPE  122   22
                               clus
vv                              PSG8 MUTATED PSG8 WILD-TYPE
  COLON ADENOCARCINOMA                     6            122
  COLON MUCINOUS ADENOCARCINOMA            2             22
                vv
clus             T1 T2 T3 T4
  PSG8 MUTATED    0  2  4  2
  PSG8 WILD-TYPE  4 31 99 12
D57V5, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  T1            0              4
  T2            2             31
  T3            4             99
  T4            2             12
                vv
clus             N0 N1 N2
  PSG8 MUTATED    5  2  1
  PSG8 WILD-TYPE 86 28 33
D57V6, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  N0            5             86
  N1            2             28
  N2            1             33
                vv
clus              M0  M1 M1A
  PSG8 MUTATED     6   1   0
  PSG8 WILD-TYPE 124  20   1
D57V7, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  M0             6            124
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  PSG8 MUTATED    0  4   2  1
  PSG8 WILD-TYPE 30 53  42 20
D57V8, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  I              0             30
  II             4             53
  III            2             42
  IV             1             20
                vv
clus              R0  R1  R2  RX
  PSG8 MUTATED     5   0   1   1
  PSG8 WILD-TYPE 124   1  18   0
D57V9, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  R0            5            124
  R1            0              1
  R2            1             18
  RX            1              0
D57V10, continuous

Clustering(58) Variable = NCKAP5 MUTATION ANALYSIS
D58V1, survival
                  sevent
clus2               0  1
  NCKAP5 MUTATED    8  1
  NCKAP5 WILD-TYPE 60 10
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
               9               70 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
               1               10 
$`NCKAP5 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02F 
       35.01        35.01        39.95 

$`NCKAP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
            0.99             0.92 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
           39.95            51.95 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 40.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
[1] "hr=" "1.5"
D58V2, continuous
D58V3, binary
                  cls
clus                0  1
  NCKAP5 MUTATED    7  6
  NCKAP5 WILD-TYPE 70 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED      7    6
  NCKAP5 WILD-TYPE   70   72
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  FEMALE              7               70
  MALE                6               72
D58V4, binary
                  cls
clus                 0   1
  NCKAP5 MUTATED    10   3
  NCKAP5 WILD-TYPE 118  21
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     10    3
  NCKAP5 WILD-TYPE  118   21
                               clus
vv                              NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              3               21
                  vv
clus               T1 T2 T3 T4
  NCKAP5 MUTATED    0  3  7  3
  NCKAP5 WILD-TYPE  4 30 96 11
D58V5, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              7               96
  T4              3               11
                  vv
clus               N0 N1 N2
  NCKAP5 MUTATED    7  4  2
  NCKAP5 WILD-TYPE 84 26 32
D58V6, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  N0              7               84
  N1              4               26
  N2              2               32
                  vv
clus                M0  M1 M1A
  NCKAP5 MUTATED    10   2   0
  NCKAP5 WILD-TYPE 120  19   1
D58V7, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  M0              10              120
  M1               2               19
  M1A              0                1
                  vv
clus                I II III IV
  NCKAP5 MUTATED    1  5   4  2
  NCKAP5 WILD-TYPE 29 52  40 19
D58V8, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  I                1               29
  II               5               52
  III              4               40
  IV               2               19
                  vv
clus                R0  R1  R2  RX
  NCKAP5 MUTATED     9   0   2   0
  NCKAP5 WILD-TYPE 120   1  17   1
D58V9, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  R0              9              120
  R1              0                1
  R2              2               17
  RX              0                1
D58V10, continuous

Clustering(59) Variable = C8B MUTATION ANALYSIS
D59V1, survival
               sevent
clus2            0  1
  C8B MUTATED    7  2
  C8B WILD-TYPE 61  9
  C8B MUTATED C8B WILD-TYPE 
            9            70 
  C8B MUTATED C8B WILD-TYPE 
            2             9 
$`C8B MUTATED`
TCGA-A6-2677 TCGA-A6-2683 TCGA-AA-3666 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A01D 
       17.79        15.52         1.02         0.99         1.02         0.99 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A02J 
       33.04        35.01         5.03 

$`C8B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-3807 
       13.91        16.54        17.19        14.70        14.37        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        35.01         1.02        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  C8B MUTATED C8B WILD-TYPE 
         0.99          0.92 
  C8B MUTATED C8B WILD-TYPE 
        35.01         51.95 
  C8B MUTATED C8B WILD-TYPE 
         5.03         12.00 
[1] "1.0 - 35.0 (5.0)"  "0.9 - 52.0 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
[1] "hr=" "2.3"
D59V2, continuous
D59V3, binary
               cls
clus             0  1
  C8B MUTATED    7  2
  C8B WILD-TYPE 70 76
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      7    2
  C8B WILD-TYPE   70   76
        clus
vv       C8B MUTATED C8B WILD-TYPE
  FEMALE           7            70
  MALE             2            76
D59V4, binary
               cls
clus              0   1
  C8B MUTATED     6   3
  C8B WILD-TYPE 122  21
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      6    3
  C8B WILD-TYPE  122   21
                               clus
vv                              C8B MUTATED C8B WILD-TYPE
  COLON ADENOCARCINOMA                    6           122
  COLON MUCINOUS ADENOCARCINOMA           3            21
               vv
clus            T1 T2 T3 T4
  C8B MUTATED    0  1  6  2
  C8B WILD-TYPE  4 32 97 12
D59V5, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  T1           0             4
  T2           1            32
  T3           6            97
  T4           2            12
               vv
clus            N0 N1 N2
  C8B MUTATED    5  2  2
  C8B WILD-TYPE 86 28 32
D59V6, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  N0           5            86
  N1           2            28
  N2           2            32
               vv
clus             M0  M1 M1A
  C8B MUTATED     7   2   0
  C8B WILD-TYPE 123  19   1
D59V7, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  M0            7           123
  M1            2            19
  M1A           0             1
               vv
clus             I II III IV
  C8B MUTATED    1  2   4  2
  C8B WILD-TYPE 29 55  40 19
D59V8, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  I             1            29
  II            2            55
  III           4            40
  IV            2            19
               vv
clus             R0  R1  R2  RX
  C8B MUTATED     7   0   1   0
  C8B WILD-TYPE 122   1  18   1
D59V9, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  R0           7           122
  R1           0             1
  R2           1            18
  RX           0             1
D59V10, continuous

Clustering(60) Variable = DNAH5 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  DNAH5 MUTATED   13  2
  DNAH5 WILD-TYPE 55  9
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             15              64 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
              2               9 
$`DNAH5 MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3842 
       16.54         8.09         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00N 
        0.99         0.99         1.02        18.02        19.00         4.01 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AA-A03J 
       20.98        51.95        40.93 

$`DNAH5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3844 
        0.99         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E 
        1.02         1.02         0.99         0.99        13.94        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        16.31         0.95 

  DNAH5 MUTATED DNAH5 WILD-TYPE 
           0.99            0.92 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
          51.95           40.96 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
           4.01           12.51 
[1] "1.0 - 52.0 (4.0)"  "0.9 - 41.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
                 cls
clus               0  1
  DNAH5 MUTATED   16 12
  DNAH5 WILD-TYPE 61 66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     16   12
  DNAH5 WILD-TYPE   61   66
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  FEMALE            16              61
  MALE              12              66
D60V4, binary
                 cls
clus                0   1
  DNAH5 MUTATED    22   5
  DNAH5 WILD-TYPE 106  19
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     22    5
  DNAH5 WILD-TYPE  106   19
                               clus
vv                              DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON ADENOCARCINOMA                     22             106
  COLON MUCINOUS ADENOCARCINOMA             5              19
                 vv
clus              T1 T2 T3 T4
  DNAH5 MUTATED    1  6 17  4
  DNAH5 WILD-TYPE  3 27 86 10
D60V5, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  T1             1               3
  T2             6              27
  T3            17              86
  T4             4              10
                 vv
clus              N0 N1 N2
  DNAH5 MUTATED   20  4  4
  DNAH5 WILD-TYPE 71 26 30
D60V6, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  N0            20              71
  N1             4              26
  N2             4              30
                 vv
clus               M0  M1 M1A
  DNAH5 MUTATED    24   3   0
  DNAH5 WILD-TYPE 106  18   1
D60V7, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  M0             24             106
  M1              3              18
  M1A             0               1
                 vv
clus               I II III IV
  DNAH5 MUTATED    4 15   5  3
  DNAH5 WILD-TYPE 26 42  39 18
D60V8, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  I               4              26
  II             15              42
  III             5              39
  IV              3              18
                 vv
clus               R0  R1  R2  RX
  DNAH5 MUTATED    25   0   2   0
  DNAH5 WILD-TYPE 104   1  17   1
D60V9, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  R0            25             104
  R1             0               1
  R2             2              17
  RX             0               1
D60V10, continuous

Clustering(61) Variable = CASP8 MUTATION ANALYSIS
D61V1, survival
                 sevent
clus2              0  1
  CASP8 MUTATED    7  0
  CASP8 WILD-TYPE 61 11
  CASP8 MUTATED CASP8 WILD-TYPE 
              7              72 
  CASP8 MUTATED CASP8 WILD-TYPE 
              0              11 
$`CASP8 MUTATED`
TCGA-AA-3518 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00J 
        1.02         1.02         0.99         0.99        18.02        18.02 
TCGA-AA-A00R 
        0.99 

$`CASP8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  CASP8 MUTATED CASP8 WILD-TYPE 
           0.99            0.92 
  CASP8 MUTATED CASP8 WILD-TYPE 
          18.02           51.95 
  CASP8 MUTATED CASP8 WILD-TYPE 
           1.02           12.51 
[1] "1.0 - 18.0 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D61V2, continuous
D61V3, binary
                 cls
clus               0  1
  CASP8 MUTATED    5  5
  CASP8 WILD-TYPE 72 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED      5    5
  CASP8 WILD-TYPE   72   73
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  FEMALE             5              72
  MALE               5              73
D61V4, binary
                 cls
clus                0   1
  CASP8 MUTATED     7   3
  CASP8 WILD-TYPE 121  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED      7    3
  CASP8 WILD-TYPE  121   21
                               clus
vv                              CASP8 MUTATED CASP8 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  CASP8 MUTATED    0  2  5  3
  CASP8 WILD-TYPE  4 31 98 11
D61V5, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             3              11
                 vv
clus              N0 N1 N2
  CASP8 MUTATED    9  1  0
  CASP8 WILD-TYPE 82 29 34
D61V6, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  N0             9              82
  N1             1              29
  N2             0              34
                 vv
clus               M0  M1 M1A
  CASP8 MUTATED    10   0   0
  CASP8 WILD-TYPE 120  21   1
D61V7, multiclass
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  CASP8 MUTATED    2  7   1  0
  CASP8 WILD-TYPE 28 50  43 21
D61V8, multiclass
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  I               2              28
  II              7              50
  III             1              43
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  CASP8 MUTATED    10   0   0   0
  CASP8 WILD-TYPE 119   1  19   1
D61V9, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  R0            10             119
  R1             0               1
  R2             0              19
  RX             0               1
D61V10, continuous

Clustering(62) Variable = CCDC160 MUTATION ANALYSIS
D62V1, survival
                   sevent
clus2                0  1
  CCDC160 MUTATED    1  0
  CCDC160 WILD-TYPE 67 11
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                1                78 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                0                11 
$`CCDC160 MUTATED`
TCGA-AA-A010 
       20.98 

$`CCDC160 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98              0.92 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98             51.95 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98             11.46 
[1] "21.0 - 21.0 (21.0)" "0.9 - 52.0 (11.5)" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
[1] "Remove cluster labels:" "CCDC160 MUTATED"       
clus
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                1                78 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
D62V2, continuous
D62V3, binary
                   cls
clus                 0  1
  CCDC160 MUTATED    4  1
  CCDC160 WILD-TYPE 73 77
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      4    1
  CCDC160 WILD-TYPE   73   77
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  FEMALE               4                73
  MALE                 1                77
D62V4, binary
                   cls
clus                  0   1
  CCDC160 MUTATED     5   0
  CCDC160 WILD-TYPE 123  24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    0
  CCDC160 WILD-TYPE  123   24
                               clus
vv                              CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               0                24
                   vv
clus                 T1  T2  T3  T4
  CCDC160 MUTATED     0   0   3   2
  CCDC160 WILD-TYPE   4  33 100  12
D62V5, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  T1               0                 4
  T2               0                33
  T3               3               100
  T4               2                12
                   vv
clus                N0 N1 N2
  CCDC160 MUTATED    3  2  0
  CCDC160 WILD-TYPE 88 28 34
D62V6, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  N0               3                88
  N1               2                28
  N2               0                34
                   vv
clus                 M0  M1 M1A
  CCDC160 MUTATED     4   1   0
  CCDC160 WILD-TYPE 126  20   1
D62V7, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  M0                4               126
  M1                1                20
  M1A               0                 1
                   vv
clus                 I II III IV
  CCDC160 MUTATED    0  3   1  1
  CCDC160 WILD-TYPE 30 54  43 20
D62V8, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  I                 0                30
  II                3                54
  III               1                43
  IV                1                20
                   vv
clus                 R0  R1  R2  RX
  CCDC160 MUTATED     4   0   1   0
  CCDC160 WILD-TYPE 125   1  18   1
D62V9, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  R0               4               125
  R1               0                 1
  R2               1                18
  RX               0                 1
D62V10, continuous

Clustering(63) Variable = DCAF4L2 MUTATION ANALYSIS
D63V1, survival
                   sevent
clus2                0  1
  DCAF4L2 MUTATED    4  1
  DCAF4L2 WILD-TYPE 64 10
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                5                74 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                1                10 
$`DCAF4L2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W 
        1.02         1.02         4.01        35.01        40.96 

$`DCAF4L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             1.02              0.92 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
            40.96             51.95 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             4.01             12.00 
[1] "1.0 - 41.0 (4.0)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
D63V3, binary
                   cls
clus                 0  1
  DCAF4L2 MUTATED    4  5
  DCAF4L2 WILD-TYPE 73 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      4    5
  DCAF4L2 WILD-TYPE   73   73
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  FEMALE               4                73
  MALE                 5                73
D63V4, binary
                   cls
clus                  0   1
  DCAF4L2 MUTATED     4   4
  DCAF4L2 WILD-TYPE 124  20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      4    4
  DCAF4L2 WILD-TYPE  124   20
                               clus
vv                              DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON ADENOCARCINOMA                        4               124
  COLON MUCINOUS ADENOCARCINOMA               4                20
                   vv
clus                 T1  T2  T3  T4
  DCAF4L2 MUTATED     0   4   3   2
  DCAF4L2 WILD-TYPE   4  29 100  12
D63V5, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  T1               0                 4
  T2               4                29
  T3               3               100
  T4               2                12
                   vv
clus                N0 N1 N2
  DCAF4L2 MUTATED    6  2  1
  DCAF4L2 WILD-TYPE 85 28 33
D63V6, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  N0               6                85
  N1               2                28
  N2               1                33
                   vv
clus                 M0  M1 M1A
  DCAF4L2 MUTATED     8   0   0
  DCAF4L2 WILD-TYPE 122  21   1
D63V7, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  M0                8               122
  M1                0                21
  M1A               0                 1
                   vv
clus                 I II III IV
  DCAF4L2 MUTATED    2  3   3  0
  DCAF4L2 WILD-TYPE 28 54  41 21
D63V8, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  I                 2                28
  II                3                54
  III               3                41
  IV                0                21
                   vv
clus                 R0  R1  R2  RX
  DCAF4L2 MUTATED     8   0   0   0
  DCAF4L2 WILD-TYPE 121   1  19   1
D63V9, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  R0               8               121
  R1               0                 1
  R2               0                19
  RX               0                 1
D63V10, continuous

Clustering(64) Variable = DKK2 MUTATION ANALYSIS
D64V1, survival
                sevent
clus2             0  1
  DKK2 MUTATED    2  0
  DKK2 WILD-TYPE 66 11
  DKK2 MUTATED DKK2 WILD-TYPE 
             2             77 
  DKK2 MUTATED DKK2 WILD-TYPE 
             0             11 
$`DKK2 MUTATED`
TCGA-A6-2676 TCGA-AA-3715 
       14.70         0.99 

$`DKK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  DKK2 MUTATED DKK2 WILD-TYPE 
          0.99           0.92 
  DKK2 MUTATED DKK2 WILD-TYPE 
         14.70          51.95 
  DKK2 MUTATED DKK2 WILD-TYPE 
         7.845         12.000 
[1] "1.0 - 14.7 (7.8)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
[1] "Remove cluster labels:" "DKK2 MUTATED"          
clus
  DKK2 MUTATED DKK2 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2677 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807     TCGA-A6-3808 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526     TCGA-AA-3555 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679     TCGA-AA-3685 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3818     TCGA-AA-3837 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939     TCGA-AA-3941 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952     TCGA-AA-3966 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986     TCGA-AA-A004 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AY-4071 
"DKK2 WILD-TYPE" 
D64V2, continuous
D64V3, binary
                cls
clus              0  1
  DKK2 MUTATED    3  2
  DKK2 WILD-TYPE 74 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      3    2
  DKK2 WILD-TYPE   74   76
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  FEMALE            3             74
  MALE              2             76
D64V4, binary
                cls
clus               0   1
  DKK2 MUTATED     4   1
  DKK2 WILD-TYPE 124  23
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      4    1
  DKK2 WILD-TYPE  124   23
                               clus
vv                              DKK2 MUTATED DKK2 WILD-TYPE
  COLON ADENOCARCINOMA                     4            124
  COLON MUCINOUS ADENOCARCINOMA            1             23
                vv
clus             T1 T2 T3 T4
  DKK2 MUTATED    0  0  4  0
  DKK2 WILD-TYPE  4 33 99 14
D64V5, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  T1            0              4
  T2            0             33
  T3            4             99
  T4            0             14
                vv
clus             N0 N1 N2
  DKK2 MUTATED    3  2  0
  DKK2 WILD-TYPE 88 28 34
D64V6, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  N0            3             88
  N1            2             28
  N2            0             34
                vv
clus              M0  M1 M1A
  DKK2 MUTATED     5   0   0
  DKK2 WILD-TYPE 125  21   1
D64V7, multiclass
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  M0             5            125
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  DKK2 MUTATED    0  3   2  0
  DKK2 WILD-TYPE 30 54  42 21
D64V8, multiclass
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  I              0             30
  II             3             54
  III            2             42
  IV             0             21
                vv
clus              R0  R1  R2  RX
  DKK2 MUTATED     5   0   0   0
  DKK2 WILD-TYPE 124   1  19   1
D64V9, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  R0            5            124
  R1            0              1
  R2            0             19
  RX            0              1
D64V10, continuous

Clustering(65) Variable = EPHA3 MUTATION ANALYSIS
D65V1, survival
                 sevent
clus2              0  1
  EPHA3 MUTATED    5  0
  EPHA3 WILD-TYPE 63 11
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              5              74 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              0              11 
$`EPHA3 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00E TCGA-AA-A010 
        0.99         0.99         1.02        30.02        20.98 

$`EPHA3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  EPHA3 MUTATED EPHA3 WILD-TYPE 
           0.99            0.92 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
          30.02           51.95 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D65V2, continuous
D65V3, binary
                 cls
clus               0  1
  EPHA3 MUTATED    8  5
  EPHA3 WILD-TYPE 69 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED      8    5
  EPHA3 WILD-TYPE   69   73
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  FEMALE             8              69
  MALE               5              73
D65V4, binary
                 cls
clus                0   1
  EPHA3 MUTATED     9   3
  EPHA3 WILD-TYPE 119  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED      9    3
  EPHA3 WILD-TYPE  119   21
                               clus
vv                              EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  EPHA3 MUTATED    0  1 10  2
  EPHA3 WILD-TYPE  4 32 93 12
D65V5, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  T1             0               4
  T2             1              32
  T3            10              93
  T4             2              12
                 vv
clus              N0 N1 N2
  EPHA3 MUTATED    8  2  3
  EPHA3 WILD-TYPE 83 28 31
D65V6, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             3              31
                 vv
clus               M0  M1 M1A
  EPHA3 MUTATED    11   2   0
  EPHA3 WILD-TYPE 119  19   1
D65V7, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  M0             11             119
  M1              2              19
  M1A             0               1
                 vv
clus               I II III IV
  EPHA3 MUTATED    1  7   3  2
  EPHA3 WILD-TYPE 29 50  41 19
D65V8, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  I               1              29
  II              7              50
  III             3              41
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  EPHA3 MUTATED     9   0   2   0
  EPHA3 WILD-TYPE 120   1  17   1
D65V9, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  R0             9             120
  R1             0               1
  R2             2              17
  RX             0               1
D65V10, continuous

Clustering(66) Variable = ERBB4 MUTATION ANALYSIS
D66V1, survival
                 sevent
clus2              0  1
  ERBB4 MUTATED    5  3
  ERBB4 WILD-TYPE 63  8
  ERBB4 MUTATED ERBB4 WILD-TYPE 
              8              71 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
              3               8 
$`ERBB4 MUTATED`
TCGA-A6-2672 TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
       16.54         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AY-4071 
        1.02         0.95 

$`ERBB4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
       40.96        39.95        18.02        40.93        16.31 

  ERBB4 MUTATED ERBB4 WILD-TYPE 
           0.95            0.92 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
          20.98           51.95 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
           1.02           13.02 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" 
[1] "hr=" "6.5"
D66V2, continuous
D66V3, binary
                 cls
clus               0  1
  ERBB4 MUTATED   10  4
  ERBB4 WILD-TYPE 67 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     10    4
  ERBB4 WILD-TYPE   67   74
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  FEMALE            10              67
  MALE               4              74
D66V4, binary
                 cls
clus                0   1
  ERBB4 MUTATED    10   3
  ERBB4 WILD-TYPE 118  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     10    3
  ERBB4 WILD-TYPE  118   21
                               clus
vv                              ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON ADENOCARCINOMA                     10             118
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  ERBB4 MUTATED    2  1  8  3
  ERBB4 WILD-TYPE  2 32 95 11
D66V5, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  T1             2               2
  T2             1              32
  T3             8              95
  T4             3              11
                 vv
clus              N0 N1 N2
  ERBB4 MUTATED   12  2  0
  ERBB4 WILD-TYPE 79 28 34
D66V6, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  N0            12              79
  N1             2              28
  N2             0              34
                 vv
clus               M0  M1 M1A
  ERBB4 MUTATED    13   0   0
  ERBB4 WILD-TYPE 117  21   1
D66V7, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  M0             13             117
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  ERBB4 MUTATED    3  9   2  0
  ERBB4 WILD-TYPE 27 48  42 21
D66V8, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  I               3              27
  II              9              48
  III             2              42
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  ERBB4 MUTATED    12   0   0   0
  ERBB4 WILD-TYPE 117   1  19   1
D66V9, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  R0            12             117
  R1             0               1
  R2             0              19
  RX             0               1
D66V10, continuous

Clustering(67) Variable = GUCY1A3 MUTATION ANALYSIS
D67V1, survival
                   sevent
clus2                0  1
  GUCY1A3 MUTATED    6  2
  GUCY1A3 WILD-TYPE 62  9
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
                8                71 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
                2                 9 
$`GUCY1A3 MUTATED`
TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01R 
        0.99        35.01 

$`GUCY1A3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
             0.99              0.92 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
            35.01             51.95 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
             1.02             13.02 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
[1] "hr=" "3.4"
D67V2, continuous
D67V3, binary
                   cls
clus                 0  1
  GUCY1A3 MUTATED    5  5
  GUCY1A3 WILD-TYPE 72 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      5    5
  GUCY1A3 WILD-TYPE   72   73
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  FEMALE               5                72
  MALE                 5                73
D67V4, binary
                   cls
clus                  0   1
  GUCY1A3 MUTATED     6   4
  GUCY1A3 WILD-TYPE 122  20
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      6    4
  GUCY1A3 WILD-TYPE  122   20
                               clus
vv                              GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON ADENOCARCINOMA                        6               122
  COLON MUCINOUS ADENOCARCINOMA               4                20
                   vv
clus                T1 T2 T3 T4
  GUCY1A3 MUTATED    0  1  6  3
  GUCY1A3 WILD-TYPE  4 32 97 11
D67V5, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               6                97
  T4               3                11
                   vv
clus                N0 N1 N2
  GUCY1A3 MUTATED    6  1  3
  GUCY1A3 WILD-TYPE 85 29 31
D67V6, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  N0               6                85
  N1               1                29
  N2               3                31
                   vv
clus                 M0  M1 M1A
  GUCY1A3 MUTATED     9   0   0
  GUCY1A3 WILD-TYPE 121  21   1
D67V7, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  M0                9               121
  M1                0                21
  M1A               0                 1
                   vv
clus                 I II III IV
  GUCY1A3 MUTATED    0  5   4  0
  GUCY1A3 WILD-TYPE 30 52  40 21
D67V8, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  I                 0                30
  II                5                52
  III               4                40
  IV                0                21
                   vv
clus                 R0  R1  R2  RX
  GUCY1A3 MUTATED     9   0   0   0
  GUCY1A3 WILD-TYPE 120   1  19   1
D67V9, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  R0               9               120
  R1               0                 1
  R2               0                19
  RX               0                 1
D67V10, continuous

Clustering(68) Variable = IFT80 MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2              0  1
  IFT80 MUTATED    5  1
  IFT80 WILD-TYPE 63 10
  IFT80 MUTATED IFT80 WILD-TYPE 
              6              73 
  IFT80 MUTATED IFT80 WILD-TYPE 
              1              10 
$`IFT80 MUTATED`
TCGA-A6-2670 TCGA-AA-3966 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A02O TCGA-AA-A02Y 
       13.91         1.02        38.07         1.02         0.92        39.95 

$`IFT80 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       16.54        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        12.00        13.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        2.01         5.03        40.96        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  IFT80 MUTATED IFT80 WILD-TYPE 
           0.92            0.92 
  IFT80 MUTATED IFT80 WILD-TYPE 
          39.95           51.95 
  IFT80 MUTATED IFT80 WILD-TYPE 
          7.465          12.000 
[1] "0.9 - 40.0 (7.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
[1] "hr=" "1.1"
D68V2, continuous
D68V3, binary
                 cls
clus               0  1
  IFT80 MUTATED    3  4
  IFT80 WILD-TYPE 74 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      3    4
  IFT80 WILD-TYPE   74   74
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  FEMALE             3              74
  MALE               4              74
D68V4, binary
                 cls
clus                0   1
  IFT80 MUTATED     5   2
  IFT80 WILD-TYPE 123  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      5    2
  IFT80 WILD-TYPE  123   22
                               clus
vv                              IFT80 MUTATED IFT80 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  IFT80 MUTATED    0  2  5  0
  IFT80 WILD-TYPE  4 31 98 14
D68V5, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             0              14
                 vv
clus              N0 N1 N2
  IFT80 MUTATED    6  1  0
  IFT80 WILD-TYPE 85 29 34
D68V6, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  N0             6              85
  N1             1              29
  N2             0              34
                 vv
clus               M0  M1 M1A
  IFT80 MUTATED     7   0   0
  IFT80 WILD-TYPE 123  21   1
D68V7, multiclass
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  M0              7             123
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  IFT80 MUTATED    2  4   1  0
  IFT80 WILD-TYPE 28 53  43 21
D68V8, multiclass
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  I               2              28
  II              4              53
  III             1              43
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  IFT80 MUTATED     6   0   0   0
  IFT80 WILD-TYPE 123   1  19   1
D68V9, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  R0             6             123
  R1             0               1
  R2             0              19
  RX             0               1
D68V10, continuous

Clustering(69) Variable = INHBA MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  INHBA MUTATED    5  1
  INHBA WILD-TYPE 63 10
  INHBA MUTATED INHBA WILD-TYPE 
              6              73 
  INHBA MUTATED INHBA WILD-TYPE 
              1              10 
$`INHBA MUTATED`
TCGA-A6-3808 TCGA-AA-3949 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R 
        9.14         0.99        34.03         4.01        20.98        35.01 

$`INHBA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  INHBA MUTATED INHBA WILD-TYPE 
           0.99            0.92 
  INHBA MUTATED INHBA WILD-TYPE 
          35.01           51.95 
  INHBA MUTATED INHBA WILD-TYPE 
          15.06           12.00 
[1] "1.0 - 35.0 (15.1)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
                 cls
clus               0  1
  INHBA MUTATED    2  5
  INHBA WILD-TYPE 75 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      2    5
  INHBA WILD-TYPE   75   73
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             2              75
  MALE               5              73
D69V4, binary
                 cls
clus                0   1
  INHBA MUTATED     2   5
  INHBA WILD-TYPE 126  19
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      2    5
  INHBA WILD-TYPE  126   19
                               clus
vv                              INHBA MUTATED INHBA WILD-TYPE
  COLON ADENOCARCINOMA                      2             126
  COLON MUCINOUS ADENOCARCINOMA             5              19
                 vv
clus              T1 T2 T3 T4
  INHBA MUTATED    0  0  5  2
  INHBA WILD-TYPE  4 33 98 12
D69V5, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             0               4
  T2             0              33
  T3             5              98
  T4             2              12
                 vv
clus              N0 N1 N2
  INHBA MUTATED    3  2  2
  INHBA WILD-TYPE 88 28 32
D69V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  N0             3              88
  N1             2              28
  N2             2              32
                 vv
clus               M0  M1 M1A
  INHBA MUTATED     7   0   0
  INHBA WILD-TYPE 123  21   1
D69V7, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  M0              7             123
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  INHBA MUTATED    0  3   4  0
  INHBA WILD-TYPE 30 54  40 21
D69V8, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  I               0              30
  II              3              54
  III             4              40
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  INHBA MUTATED     7   0   0   0
  INHBA WILD-TYPE 122   1  19   1
D69V9, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  R0             7             122
  R1             0               1
  R2             0              19
  RX             0               1
D69V10, continuous

Clustering(70) Variable = KLK2 MUTATION ANALYSIS
D70V1, survival
                sevent
clus2             0  1
  KLK2 MUTATED    2  0
  KLK2 WILD-TYPE 66 11
  KLK2 MUTATED KLK2 WILD-TYPE 
             2             77 
  KLK2 MUTATED KLK2 WILD-TYPE 
             0             11 
$`KLK2 MUTATED`
TCGA-AA-3555 TCGA-AA-A00A 
        0.99        18.02 

$`KLK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  KLK2 MUTATED KLK2 WILD-TYPE 
          0.99           0.92 
  KLK2 MUTATED KLK2 WILD-TYPE 
         18.02          51.95 
  KLK2 MUTATED KLK2 WILD-TYPE 
         9.505         12.000 
[1] "1.0 - 18.0 (9.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679     TCGA-AA-3685 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3818 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AY-4071 
"KLK2 WILD-TYPE" 
D70V2, continuous
D70V3, binary
                cls
clus              0  1
  KLK2 MUTATED    1  2
  KLK2 WILD-TYPE 76 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      1    2
  KLK2 WILD-TYPE   76   76
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  FEMALE            1             76
  MALE              2             76
D70V4, binary
                cls
clus               0   1
  KLK2 MUTATED     2   1
  KLK2 WILD-TYPE 126  23
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      2    1
  KLK2 WILD-TYPE  126   23
                               clus
vv                              KLK2 MUTATED KLK2 WILD-TYPE
  COLON ADENOCARCINOMA                     2            126
  COLON MUCINOUS ADENOCARCINOMA            1             23
                vv
clus              T1  T2  T3  T4
  KLK2 MUTATED     0   0   3   0
  KLK2 WILD-TYPE   4  33 100  14
D70V5, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  T1            0              4
  T2            0             33
  T3            3            100
  T4            0             14
                vv
clus             N0 N1 N2
  KLK2 MUTATED    2  0  1
  KLK2 WILD-TYPE 89 30 33
D70V6, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  N0            2             89
  N1            0             30
  N2            1             33
                vv
clus              M0  M1 M1A
  KLK2 MUTATED     3   0   0
  KLK2 WILD-TYPE 127  21   1
D70V7, multiclass
     clus
vv    KLK2 MUTATED KLK2 WILD-TYPE
  M0             3            127
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  KLK2 MUTATED    0  2   1  0
  KLK2 WILD-TYPE 30 55  43 21
D70V8, multiclass
     clus
vv    KLK2 MUTATED KLK2 WILD-TYPE
  I              0             30
  II             2             55
  III            1             43
  IV             0             21
                vv
clus              R0  R1  R2  RX
  KLK2 MUTATED     3   0   0   0
  KLK2 WILD-TYPE 126   1  19   1
D70V9, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  R0            3            126
  R1            0              1
  R2            0             19
  RX            0              1
D70V10, continuous

Clustering(71) Variable = LPPR4 MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  LPPR4 MUTATED    5  0
  LPPR4 WILD-TYPE 63 11
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              5              74 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              0              11 
$`LPPR4 MUTATED`
TCGA-AA-3710 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A01Q 
        1.02         0.99         1.02         1.02         1.02 

$`LPPR4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  LPPR4 MUTATED LPPR4 WILD-TYPE 
           0.99            0.92 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           51.95 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D71V2, continuous
D71V3, binary
                 cls
clus               0  1
  LPPR4 MUTATED    6  5
  LPPR4 WILD-TYPE 71 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      6    5
  LPPR4 WILD-TYPE   71   73
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  FEMALE             6              71
  MALE               5              73
D71V4, binary
                 cls
clus                0   1
  LPPR4 MUTATED     9   2
  LPPR4 WILD-TYPE 119  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      9    2
  LPPR4 WILD-TYPE  119   22
                               clus
vv                              LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  LPPR4 MUTATED    1  2  7  1
  LPPR4 WILD-TYPE  3 31 96 13
D71V5, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  T1             1               3
  T2             2              31
  T3             7              96
  T4             1              13
                 vv
clus              N0 N1 N2
  LPPR4 MUTATED    6  5  0
  LPPR4 WILD-TYPE 85 25 34
D71V6, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  N0             6              85
  N1             5              25
  N2             0              34
                 vv
clus               M0  M1 M1A
  LPPR4 MUTATED     9   1   0
  LPPR4 WILD-TYPE 121  20   1
D71V7, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  M0              9             121
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  LPPR4 MUTATED    1  4   4  1
  LPPR4 WILD-TYPE 29 53  40 20
D71V8, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  I               1              29
  II              4              53
  III             4              40
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  LPPR4 MUTATED     8   0   1   0
  LPPR4 WILD-TYPE 121   1  18   1
D71V9, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  R0             8             121
  R1             0               1
  R2             1              18
  RX             0               1
D71V10, continuous

Clustering(72) Variable = OR7C1 MUTATION ANALYSIS
D72V1, survival
                 sevent
clus2              0  1
  OR7C1 MUTATED    1  1
  OR7C1 WILD-TYPE 67 10
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2              77 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              1              10 
$`OR7C1 MUTATED`
TCGA-AA-3518 TCGA-AY-4071 
        1.02         0.95 

$`OR7C1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
       40.96        39.95        18.02        40.93        16.31 

  OR7C1 MUTATED OR7C1 WILD-TYPE 
           0.95            0.92 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
           1.02           51.95 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
          0.985          12.000 
[1] "0.9 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" 
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3526      TCGA-AA-3555 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AY-4070 
"OR7C1 WILD-TYPE" 
D72V2, continuous
D72V3, binary
                 cls
clus               0  1
  OR7C1 MUTATED    4  2
  OR7C1 WILD-TYPE 73 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      4    2
  OR7C1 WILD-TYPE   73   76
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  FEMALE             4              73
  MALE               2              76
D72V4, binary
                 cls
clus                0   1
  OR7C1 MUTATED     3   2
  OR7C1 WILD-TYPE 125  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      3    2
  OR7C1 WILD-TYPE  125   22
                               clus
vv                              OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON ADENOCARCINOMA                      3             125
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  OR7C1 MUTATED    1  1  4  0
  OR7C1 WILD-TYPE  3 32 99 14
D72V5, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  T1             1               3
  T2             1              32
  T3             4              99
  T4             0              14
                 vv
clus              N0 N1 N2
  OR7C1 MUTATED    4  1  1
  OR7C1 WILD-TYPE 87 29 33
D72V6, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  N0             4              87
  N1             1              29
  N2             1              33
                 vv
clus               M0  M1 M1A
  OR7C1 MUTATED     5   0   0
  OR7C1 WILD-TYPE 125  21   1
D72V7, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  M0              5             125
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  OR7C1 MUTATED    2  2   2  0
  OR7C1 WILD-TYPE 28 55  42 21
D72V8, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  I               2              28
  II              2              55
  III             2              42
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  OR7C1 MUTATED     4   0   0   0
  OR7C1 WILD-TYPE 125   1  19   1
D72V9, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  R0             4             125
  R1             0               1
  R2             0              19
  RX             0               1
D72V10, continuous

Clustering(73) Variable = SCN7A MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2              0  1
  SCN7A MUTATED    6  1
  SCN7A WILD-TYPE 62 10
  SCN7A MUTATED SCN7A WILD-TYPE 
              7              72 
  SCN7A MUTATED SCN7A WILD-TYPE 
              1              10 
$`SCN7A MUTATED`
TCGA-A6-3810 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N 
        8.09         0.99         0.99         1.02         1.02         4.01 
TCGA-AA-A010 
       20.98 

$`SCN7A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  SCN7A MUTATED SCN7A WILD-TYPE 
           0.99            0.92 
  SCN7A MUTATED SCN7A WILD-TYPE 
          20.98           51.95 
  SCN7A MUTATED SCN7A WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
[1] "hr=" "1.7"
D73V2, continuous
D73V3, binary
                 cls
clus               0  1
  SCN7A MUTATED    7  5
  SCN7A WILD-TYPE 70 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      7    5
  SCN7A WILD-TYPE   70   73
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  FEMALE             7              70
  MALE               5              73
D73V4, binary
                 cls
clus                0   1
  SCN7A MUTATED     8   3
  SCN7A WILD-TYPE 120  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      8    3
  SCN7A WILD-TYPE  120   21
                               clus
vv                              SCN7A MUTATED SCN7A WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  SCN7A MUTATED    0  1  7  4
  SCN7A WILD-TYPE  4 32 96 10
D73V5, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  T1             0               4
  T2             1              32
  T3             7              96
  T4             4              10
                 vv
clus              N0 N1 N2
  SCN7A MUTATED   10  0  2
  SCN7A WILD-TYPE 81 30 32
D73V6, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  N0            10              81
  N1             0              30
  N2             2              32
                 vv
clus               M0  M1 M1A
  SCN7A MUTATED    10   1   0
  SCN7A WILD-TYPE 120  20   1
D73V7, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  M0             10             120
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  SCN7A MUTATED    0  9   1  1
  SCN7A WILD-TYPE 30 48  43 20
D73V8, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  I               0              30
  II              9              48
  III             1              43
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  SCN7A MUTATED     9   0   1   0
  SCN7A WILD-TYPE 120   1  18   1
D73V9, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  R0             9             120
  R1             0               1
  R2             1              18
  RX             0               1
D73V10, continuous

Clustering(74) Variable = TGFBR2 MUTATION ANALYSIS
D74V1, survival
                  sevent
clus2               0  1
  TGFBR2 MUTATED    5  1
  TGFBR2 WILD-TYPE 63 10
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               6               73 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               1               10 
$`TGFBR2 MUTATED`
TCGA-A6-3808 TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A029 TCGA-AA-A03F 
        9.14        20.98         1.02        35.01        51.95        18.02 

$`TGFBR2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T 
       12.00        12.00        13.02        38.07         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        39.95        40.93        16.31 
TCGA-AY-4071 
        0.95 

  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
            1.02             0.92 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
           51.95            40.96 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
           19.50            10.92 
[1] "1.0 - 52.0 (19.5)" "0.9 - 41.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
[1] "hr=" "1.4"
D74V2, continuous
D74V3, binary
                  cls
clus                0  1
  TGFBR2 MUTATED    4  3
  TGFBR2 WILD-TYPE 73 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      4    3
  TGFBR2 WILD-TYPE   73   75
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  FEMALE              4               73
  MALE                3               75
D74V4, binary
                  cls
clus                 0   1
  TGFBR2 MUTATED     4   3
  TGFBR2 WILD-TYPE 124  21
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      4    3
  TGFBR2 WILD-TYPE  124   21
                               clus
vv                              TGFBR2 MUTATED TGFBR2 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              3               21
                  vv
clus               T1 T2 T3 T4
  TGFBR2 MUTATED    0  1  5  1
  TGFBR2 WILD-TYPE  4 32 98 13
D74V5, multiclass
    clus
vv   TGFBR2 MUTATED TGFBR2 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              5               98
  T4              1               13
                  vv
clus               N0 N1 N2
  TGFBR2 MUTATED    5  0  2
  TGFBR2 WILD-TYPE 86 30 32
D74V6, multiclass
    clus
vv   TGFBR2 MUTATED TGFBR2 WILD-TYPE
  N0              5               86
  N1              0               30
  N2              2               32
                  vv
clus                M0  M1 M1A
  TGFBR2 MUTATED     7   0   0
  TGFBR2 WILD-TYPE 123  21   1
D74V7, multiclass
     clus
vv    TGFBR2 MUTATED TGFBR2 WILD-TYPE
  M0               7              123
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  TGFBR2 MUTATED    1  4   2  0
  TGFBR2 WILD-TYPE 29 53  42 21
D74V8, multiclass
     clus
vv    TGFBR2 MUTATED TGFBR2 WILD-TYPE
  I                1               29
  II               4               53
  III              2               42
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  TGFBR2 MUTATED     7   0   0   0
  TGFBR2 WILD-TYPE 122   1  19   1
D74V9, multiclass
    clus
vv   TGFBR2 MUTATED TGFBR2 WILD-TYPE
  R0              7              122
  R1              0                1
  R2              0               19
  RX              0                1
D74V10, continuous

Clustering(75) Variable = TRPS1 MUTATION ANALYSIS
D75V1, survival
                 sevent
clus2              0  1
  TRPS1 MUTATED    8  1
  TRPS1 WILD-TYPE 60 10
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              9              70 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              1              10 
$`TRPS1 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02        13.94         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02Y 
       35.01        35.01        39.95 

$`TRPS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99         0.99        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  TRPS1 MUTATED TRPS1 WILD-TYPE 
           0.99            0.92 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          39.95           51.95 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          13.94           11.46 
[1] "1.0 - 40.0 (13.9)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
[1] "hr=" "1.5"
D75V2, continuous
D75V3, binary
                 cls
clus               0  1
  TRPS1 MUTATED    5  8
  TRPS1 WILD-TYPE 72 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED      5    8
  TRPS1 WILD-TYPE   72   70
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  FEMALE             5              72
  MALE               8              70
D75V4, binary
                 cls
clus                0   1
  TRPS1 MUTATED     9   4
  TRPS1 WILD-TYPE 119  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED      9    4
  TRPS1 WILD-TYPE  119   20
                               clus
vv                              TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  TRPS1 MUTATED    0  3  6  4
  TRPS1 WILD-TYPE  4 30 97 10
D75V5, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             6              97
  T4             4              10
                 vv
clus              N0 N1 N2
  TRPS1 MUTATED   11  1  1
  TRPS1 WILD-TYPE 80 29 33
D75V6, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  N0            11              80
  N1             1              29
  N2             1              33
                 vv
clus               M0  M1 M1A
  TRPS1 MUTATED    12   0   0
  TRPS1 WILD-TYPE 118  21   1
D75V7, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  M0             12             118
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  TRPS1 MUTATED    2  8   2  0
  TRPS1 WILD-TYPE 28 49  42 21
D75V8, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  I               2              28
  II              8              49
  III             2              42
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  TRPS1 MUTATED    12   0   0   0
  TRPS1 WILD-TYPE 117   1  19   1
D75V9, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  R0            12             117
  R1             0               1
  R2             0              19
  RX             0               1
D75V10, continuous

Clustering(76) Variable = OR8J1 MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2              0  1
  OR8J1 MUTATED    3  1
  OR8J1 WILD-TYPE 65 10
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              4              75 
  OR8J1 MUTATED OR8J1 WILD-TYPE 
              1              10 
$`OR8J1 MUTATED`
TCGA-AA-3818 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A017 
        0.99         1.02        20.98        15.02 

$`OR8J1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  OR8J1 MUTATED OR8J1 WILD-TYPE 
           0.99            0.92 
  OR8J1 MUTATED OR8J1 WILD-TYPE 
          20.98           51.95 
  OR8J1 MUTATED OR8J1 WILD-TYPE 
           8.02           12.00 
[1] "1.0 - 21.0 (8.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE"   "OR8J1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8J1 MUTATED"   "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE"   "OR8J1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8J1 MUTATED"   "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE"   "OR8J1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8J1 MUTATED"   "OR8J1 MUTATED" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" "OR8J1 WILD-TYPE" 
[1] "hr=" "2.6"
D76V2, continuous
D76V3, binary
                 cls
clus               0  1
  OR8J1 MUTATED    3  1
  OR8J1 WILD-TYPE 74 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8J1 MUTATED      3    1
  OR8J1 WILD-TYPE   74   77
        clus
vv       OR8J1 MUTATED OR8J1 WILD-TYPE
  FEMALE             3              74
  MALE               1              77
D76V4, binary
                 cls
clus                0   1
  OR8J1 MUTATED     4   0
  OR8J1 WILD-TYPE 124  24
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8J1 MUTATED      4    0
  OR8J1 WILD-TYPE  124   24
                               clus
vv                              OR8J1 MUTATED OR8J1 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             0              24
                 vv
clus               T1  T2  T3  T4
  OR8J1 MUTATED     0   1   2   1
  OR8J1 WILD-TYPE   4  32 101  13
D76V5, multiclass
    clus
vv   OR8J1 MUTATED OR8J1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             2             101
  T4             1              13
                 vv
clus              N0 N1 N2
  OR8J1 MUTATED    4  0  0
  OR8J1 WILD-TYPE 87 30 34
D76V6, multiclass
    clus
vv   OR8J1 MUTATED OR8J1 WILD-TYPE
  N0             4              87
  N1             0              30
  N2             0              34
                 vv
clus               M0  M1 M1A
  OR8J1 MUTATED     3   0   0
  OR8J1 WILD-TYPE 127  21   1
D76V7, multiclass
     clus
vv    OR8J1 MUTATED OR8J1 WILD-TYPE
  M0              3             127
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  OR8J1 MUTATED    0  3   0  0
  OR8J1 WILD-TYPE 30 54  44 21
D76V8, multiclass
     clus
vv    OR8J1 MUTATED OR8J1 WILD-TYPE
  I               0              30
  II              3              54
  III             0              44
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  OR8J1 MUTATED     3   0   0   0
  OR8J1 WILD-TYPE 126   1  19   1
D76V9, multiclass
    clus
vv   OR8J1 MUTATED OR8J1 WILD-TYPE
  R0             3             126
  R1             0               1
  R2             0              19
  RX             0               1
D76V10, continuous

Clustering(77) Variable = RIMS2 MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED    3  2
  RIMS2 WILD-TYPE 65  9
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              5              74 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              2               9 
$`RIMS2 MUTATED`
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A024 
        0.99         1.02         4.01        20.98        39.06 

$`RIMS2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.99            0.92 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          39.06           51.95 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 39.1 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
[1] "hr=" "2.5"
D77V2, continuous
D77V3, binary
                 cls
clus               0  1
  RIMS2 MUTATED    7  5
  RIMS2 WILD-TYPE 70 73
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      7    5
  RIMS2 WILD-TYPE   70   73
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE             7              70
  MALE               5              73
D77V4, binary
                 cls
clus                0   1
  RIMS2 MUTATED     8   4
  RIMS2 WILD-TYPE 120  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      8    4
  RIMS2 WILD-TYPE  120   20
                               clus
vv                              RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  RIMS2 MUTATED    0  2  7  3
  RIMS2 WILD-TYPE  4 31 96 11
D77V5, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             7              96
  T4             3              11
                 vv
clus              N0 N1 N2
  RIMS2 MUTATED    8  2  2
  RIMS2 WILD-TYPE 83 28 32
D77V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             2              32
                 vv
clus               M0  M1 M1A
  RIMS2 MUTATED     9   2   0
  RIMS2 WILD-TYPE 121  19   1
D77V7, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  M0              9             121
  M1              2              19
  M1A             0               1
                 vv
clus               I II III IV
  RIMS2 MUTATED    1  6   2  2
  RIMS2 WILD-TYPE 29 51  42 19
D77V8, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  I               1              29
  II              6              51
  III             2              42
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  RIMS2 MUTATED     9   0   2   0
  RIMS2 WILD-TYPE 120   1  17   1
D77V9, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  R0             9             120
  R1             0               1
  R2             2              17
  RX             0               1
D77V10, continuous

Clustering(78) Variable = SFMBT2 MUTATION ANALYSIS
D78V1, survival
                  sevent
clus2               0  1
  SFMBT2 MUTATED    7  0
  SFMBT2 WILD-TYPE 61 11
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               7               72 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               0               11 
$`SFMBT2 MUTATED`
TCGA-A6-2676 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         1.02        20.98 
TCGA-AA-A01R 
       35.01 

$`SFMBT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            0.99             0.92 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
           35.01            51.95 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D78V2, continuous
D78V3, binary
                  cls
clus                0  1
  SFMBT2 MUTATED    5  7
  SFMBT2 WILD-TYPE 72 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED      5    7
  SFMBT2 WILD-TYPE   72   71
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  FEMALE              5               72
  MALE                7               71
D78V4, binary
                  cls
clus                 0   1
  SFMBT2 MUTATED     9   3
  SFMBT2 WILD-TYPE 119  21
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED      9    3
  SFMBT2 WILD-TYPE  119   21
                               clus
vv                              SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON ADENOCARCINOMA                       9              119
  COLON MUCINOUS ADENOCARCINOMA              3               21
                  vv
clus               T1 T2 T3 T4
  SFMBT2 MUTATED    0  4  5  2
  SFMBT2 WILD-TYPE  4 29 98 12
D78V5, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  T1              0                4
  T2              4               29
  T3              5               98
  T4              2               12
                  vv
clus               N0 N1 N2
  SFMBT2 MUTATED    7  3  2
  SFMBT2 WILD-TYPE 84 27 32
D78V6, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  N0              7               84
  N1              3               27
  N2              2               32
                  vv
clus                M0  M1 M1A
  SFMBT2 MUTATED     9   2   0
  SFMBT2 WILD-TYPE 121  19   1
D78V7, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  M0               9              121
  M1               2               19
  M1A              0                1
                  vv
clus                I II III IV
  SFMBT2 MUTATED    2  4   3  2
  SFMBT2 WILD-TYPE 28 53  41 19
D78V8, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  I                2               28
  II               4               53
  III              3               41
  IV               2               19
                  vv
clus                R0  R1  R2  RX
  SFMBT2 MUTATED     9   0   2   0
  SFMBT2 WILD-TYPE 120   1  17   1
D78V9, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  R0              9              120
  R1              0                1
  R2              2               17
  RX              0                1
D78V10, continuous

Clustering(79) Variable = IL18R1 MUTATION ANALYSIS
D79V1, survival
                  sevent
clus2               0  1
  IL18R1 MUTATED    4  0
  IL18R1 WILD-TYPE 64 11
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               4               75 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               0               11 
$`IL18R1 MUTATED`
TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A02O 
        0.99        18.02        20.98         0.92 

$`IL18R1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  IL18R1 MUTATED IL18R1 WILD-TYPE 
            0.92             0.92 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
           20.98            51.95 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
           9.505           12.000 
[1] "0.9 - 21.0 (9.5)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D79V2, continuous
D79V3, binary
                  cls
clus                0  1
  IL18R1 MUTATED    4  4
  IL18R1 WILD-TYPE 73 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      4    4
  IL18R1 WILD-TYPE   73   74
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  FEMALE              4               73
  MALE                4               74
D79V4, binary
                  cls
clus                 0   1
  IL18R1 MUTATED     5   3
  IL18R1 WILD-TYPE 123  21
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      5    3
  IL18R1 WILD-TYPE  123   21
                               clus
vv                              IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON ADENOCARCINOMA                       5              123
  COLON MUCINOUS ADENOCARCINOMA              3               21
                  vv
clus               T1 T2 T3 T4
  IL18R1 MUTATED    1  1  4  2
  IL18R1 WILD-TYPE  3 32 99 12
D79V5, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  T1              1                3
  T2              1               32
  T3              4               99
  T4              2               12
                  vv
clus               N0 N1 N2
  IL18R1 MUTATED    3  3  2
  IL18R1 WILD-TYPE 88 27 32
D79V6, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  N0              3               88
  N1              3               27
  N2              2               32
                  vv
clus                M0  M1 M1A
  IL18R1 MUTATED     8   0   0
  IL18R1 WILD-TYPE 122  21   1
D79V7, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  M0               8              122
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  IL18R1 MUTATED    1  2   5  0
  IL18R1 WILD-TYPE 29 55  39 21
D79V8, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  I                1               29
  II               2               55
  III              5               39
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  IL18R1 MUTATED     7   0   0   0
  IL18R1 WILD-TYPE 122   1  19   1
D79V9, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  R0              7              122
  R1              0                1
  R2              0               19
  RX              0                1
D79V10, continuous

Clustering(80) Variable = PCDH17 MUTATION ANALYSIS
D80V1, survival
                  sevent
clus2               0  1
  PCDH17 MUTATED    9  0
  PCDH17 WILD-TYPE 59 11
  PCDH17 MUTATED PCDH17 WILD-TYPE 
               9               70 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
               0               11 
$`PCDH17 MUTATED`
TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00U 
        0.99         0.99         1.02        13.94        18.02        17.00 
TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A03J 
       20.98        35.01        40.93 

$`PCDH17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00E 
        1.02         1.02         0.99         0.99        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
       27.02         0.99        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        16.31         0.95 

  PCDH17 MUTATED PCDH17 WILD-TYPE 
            0.99             0.92 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
           40.93            51.95 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
           17.00            10.03 
[1] "1.0 - 40.9 (17.0)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
[1] "hr="     "8.4e+07"
D80V2, continuous
D80V3, binary
                  cls
clus                0  1
  PCDH17 MUTATED    7  7
  PCDH17 WILD-TYPE 70 71
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH17 MUTATED      7    7
  PCDH17 WILD-TYPE   70   71
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  FEMALE              7               70
  MALE                7               71
D80V4, binary
                  cls
clus                 0   1
  PCDH17 MUTATED    13   1
  PCDH17 WILD-TYPE 115  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH17 MUTATED     13    1
  PCDH17 WILD-TYPE  115   23
                               clus
vv                              PCDH17 MUTATED PCDH17 WILD-TYPE
  COLON ADENOCARCINOMA                      13              115
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus               T1 T2 T3 T4
  PCDH17 MUTATED    0  3  9  2
  PCDH17 WILD-TYPE  4 30 94 12
D80V5, multiclass
    clus
vv   PCDH17 MUTATED PCDH17 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              9               94
  T4              2               12
                  vv
clus               N0 N1 N2
  PCDH17 MUTATED   12  1  1
  PCDH17 WILD-TYPE 79 29 33
D80V6, multiclass
    clus
vv   PCDH17 MUTATED PCDH17 WILD-TYPE
  N0             12               79
  N1              1               29
  N2              1               33
                  vv
clus                M0  M1 M1A
  PCDH17 MUTATED    13   0   0
  PCDH17 WILD-TYPE 117  21   1
D80V7, multiclass
     clus
vv    PCDH17 MUTATED PCDH17 WILD-TYPE
  M0              13              117
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  PCDH17 MUTATED    2  9   2  0
  PCDH17 WILD-TYPE 28 48  42 21
D80V8, multiclass
     clus
vv    PCDH17 MUTATED PCDH17 WILD-TYPE
  I                2               28
  II               9               48
  III              2               42
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  PCDH17 MUTATED    13   0   0   0
  PCDH17 WILD-TYPE 116   1  19   1
D80V9, multiclass
    clus
vv   PCDH17 MUTATED PCDH17 WILD-TYPE
  R0             13              116
  R1              0                1
  R2              0               19
  RX              0                1
D80V10, continuous

Clustering(81) Variable = FLRT2 MUTATION ANALYSIS
D81V1, survival
                 sevent
clus2              0  1
  FLRT2 MUTATED    3  1
  FLRT2 WILD-TYPE 65 10
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              4              75 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              1              10 
$`FLRT2 MUTATED`
TCGA-A6-2676 TCGA-AA-A00N TCGA-AA-A00Z TCGA-AA-A010 
       14.70         4.01        21.99        20.98 

$`FLRT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  FLRT2 MUTATED FLRT2 WILD-TYPE 
           4.01            0.92 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          21.99           51.95 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          17.84           10.92 
[1] "4.0 - 22.0 (17.8)" "0.9 - 52.0 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
[1] "hr=" "1.6"
D81V2, continuous
D81V3, binary
                 cls
clus               0  1
  FLRT2 MUTATED    7  4
  FLRT2 WILD-TYPE 70 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      7    4
  FLRT2 WILD-TYPE   70   74
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  FEMALE             7              70
  MALE               4              74
D81V4, binary
                 cls
clus                0   1
  FLRT2 MUTATED     8   2
  FLRT2 WILD-TYPE 120  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      8    2
  FLRT2 WILD-TYPE  120   22
                               clus
vv                              FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  FLRT2 MUTATED    1  0  7  2
  FLRT2 WILD-TYPE  3 33 96 12
D81V5, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             7              96
  T4             2              12
                 vv
clus              N0 N1 N2
  FLRT2 MUTATED    8  1  2
  FLRT2 WILD-TYPE 83 29 32
D81V6, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  N0             8              83
  N1             1              29
  N2             2              32
                 vv
clus               M0  M1 M1A
  FLRT2 MUTATED    11   0   0
  FLRT2 WILD-TYPE 119  21   1
D81V7, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  M0             11             119
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  FLRT2 MUTATED    1  7   3  0
  FLRT2 WILD-TYPE 29 50  41 21
D81V8, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  I               1              29
  II              7              50
  III             3              41
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  FLRT2 MUTATED    11   0   0   0
  FLRT2 WILD-TYPE 118   1  19   1
D81V9, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  R0            11             118
  R1             0               1
  R2             0              19
  RX             0               1
D81V10, continuous

Clustering(82) Variable = ZC3H13 MUTATION ANALYSIS
D82V1, survival
                  sevent
clus2               0  1
  ZC3H13 MUTATED   10  1
  ZC3H13 WILD-TYPE 58 10
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              11               68 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
               1               10 
$`ZC3H13 MUTATED`
TCGA-A6-2677 TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
       17.79         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01F TCGA-AA-A01Q TCGA-AA-A01R 
        0.99        20.98        13.02         1.02        35.01 

$`ZC3H13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G 
       17.00        14.99        21.99        15.02         0.99        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02        38.07         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
            0.99             0.92 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
           35.01            51.95 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
[1] "hr=" "1.2"
D82V2, continuous
D82V3, binary
                  cls
clus                0  1
  ZC3H13 MUTATED    8  9
  ZC3H13 WILD-TYPE 69 69
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED      8    9
  ZC3H13 WILD-TYPE   69   69
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  FEMALE              8               69
  MALE                9               69
D82V4, binary
                  cls
clus                 0   1
  ZC3H13 MUTATED    10   6
  ZC3H13 WILD-TYPE 118  18
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     10    6
  ZC3H13 WILD-TYPE  118   18
                               clus
vv                              ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              6               18
                  vv
clus               T1 T2 T3 T4
  ZC3H13 MUTATED    0  3 10  4
  ZC3H13 WILD-TYPE  4 30 93 10
D82V5, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  T1              0                4
  T2              3               30
  T3             10               93
  T4              4               10
                  vv
clus               N0 N1 N2
  ZC3H13 MUTATED   11  3  3
  ZC3H13 WILD-TYPE 80 27 31
D82V6, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  N0             11               80
  N1              3               27
  N2              3               31
                  vv
clus                M0  M1 M1A
  ZC3H13 MUTATED    16   0   0
  ZC3H13 WILD-TYPE 114  21   1
D82V7, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  M0              16              114
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  ZC3H13 MUTATED    2  8   6  0
  ZC3H13 WILD-TYPE 28 49  38 21
D82V8, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  I                2               28
  II               8               49
  III              6               38
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  ZC3H13 MUTATED    15   0   0   0
  ZC3H13 WILD-TYPE 114   1  19   1
D82V9, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  R0             15              114
  R1              0                1
  R2              0               19
  RX              0                1
D82V10, continuous

Clustering(83) Variable = PTEN MUTATION ANALYSIS
D83V1, survival
                sevent
clus2             0  1
  PTEN MUTATED    2  0
  PTEN WILD-TYPE 66 11
  PTEN MUTATED PTEN WILD-TYPE 
             2             77 
  PTEN MUTATED PTEN WILD-TYPE 
             0             11 
$`PTEN MUTATED`
TCGA-AA-3977 TCGA-AA-A010 
        1.02        20.98 

$`PTEN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  PTEN MUTATED PTEN WILD-TYPE 
          1.02           0.92 
  PTEN MUTATED PTEN WILD-TYPE 
         20.98          51.95 
  PTEN MUTATED PTEN WILD-TYPE 
            11             12 
[1] "1.0 - 21.0 (11.0)" "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3986 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A017 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AY-4071 
"PTEN WILD-TYPE" 
D83V2, continuous
D83V3, binary
                cls
clus              0  1
  PTEN MUTATED    2  2
  PTEN WILD-TYPE 75 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      2    2
  PTEN WILD-TYPE   75   76
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            2             75
  MALE              2             76
D83V4, binary
                cls
clus               0   1
  PTEN MUTATED     3   1
  PTEN WILD-TYPE 125  23
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      3    1
  PTEN WILD-TYPE  125   23
                               clus
vv                              PTEN MUTATED PTEN WILD-TYPE
  COLON ADENOCARCINOMA                     3            125
  COLON MUCINOUS ADENOCARCINOMA            1             23
                vv
clus              T1  T2  T3  T4
  PTEN MUTATED     0   1   2   1
  PTEN WILD-TYPE   4  32 101  13
D83V5, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            0              4
  T2            1             32
  T3            2            101
  T4            1             13
                vv
clus             N0 N1 N2
  PTEN MUTATED    3  0  1
  PTEN WILD-TYPE 88 30 33
D83V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0            3             88
  N1            0             30
  N2            1             33
                vv
clus              M0  M1 M1A
  PTEN MUTATED     2   1   0
  PTEN WILD-TYPE 128  20   1
D83V7, multiclass
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  M0             2            128
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  PTEN MUTATED    0  2   0  1
  PTEN WILD-TYPE 30 55  44 20
D83V8, multiclass
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  I              0             30
  II             2             55
  III            0             44
  IV             1             20
                vv
clus              R0  R1  R2  RX
  PTEN MUTATED     2   0   1   0
  PTEN WILD-TYPE 127   1  18   1
D83V9, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  R0            2            127
  R1            0              1
  R2            1             18
  RX            0              1
D83V10, continuous

Clustering(84) Variable = ZFHX4 MUTATION ANALYSIS
D84V1, survival
                 sevent
clus2              0  1
  ZFHX4 MUTATED    7  4
  ZFHX4 WILD-TYPE 61  7
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             11              68 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
              4               7 
$`ZFHX4 MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3848 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02H TCGA-AY-4071 
        1.02         4.01        20.98         2.01         0.95 

$`ZFHX4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 
        0.99         1.02         1.02         0.92         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
           0.95            0.92 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
          20.98           51.95 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
          1.020          13.925 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (13.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
[1] "hr=" "11" 
D84V2, continuous
D84V3, binary
                 cls
clus               0  1
  ZFHX4 MUTATED   10  7
  ZFHX4 WILD-TYPE 67 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     10    7
  ZFHX4 WILD-TYPE   67   71
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  FEMALE            10              67
  MALE               7              71
D84V4, binary
                 cls
clus                0   1
  ZFHX4 MUTATED    12   4
  ZFHX4 WILD-TYPE 116  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     12    4
  ZFHX4 WILD-TYPE  116   20
                               clus
vv                              ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  ZFHX4 MUTATED    2  2  9  4
  ZFHX4 WILD-TYPE  2 31 94 10
D84V5, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  T1             2               2
  T2             2              31
  T3             9              94
  T4             4              10
                 vv
clus              N0 N1 N2
  ZFHX4 MUTATED   13  2  2
  ZFHX4 WILD-TYPE 78 28 32
D84V6, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  N0            13              78
  N1             2              28
  N2             2              32
                 vv
clus               M0  M1 M1A
  ZFHX4 MUTATED    14   1   0
  ZFHX4 WILD-TYPE 116  20   1
D84V7, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  M0             14             116
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  ZFHX4 MUTATED    3  9   3  1
  ZFHX4 WILD-TYPE 27 48  41 20
D84V8, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  I               3              27
  II              9              48
  III             3              41
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  ZFHX4 MUTATED    14   0   1   0
  ZFHX4 WILD-TYPE 115   1  18   1
D84V9, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  R0            14             115
  R1             0               1
  R2             1              18
  RX             0               1
D84V10, continuous

Clustering(85) Variable = NRXN3 MUTATION ANALYSIS
D85V1, survival
                 sevent
clus2              0  1
  NRXN3 MUTATED    5  1
  NRXN3 WILD-TYPE 63 10
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              6              73 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              1              10 
$`NRXN3 MUTATED`
TCGA-A6-2672 TCGA-A6-2678 TCGA-AA-3949 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 
       16.54        14.37         0.99        18.02         4.01        20.98 

$`NRXN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  NRXN3 MUTATED NRXN3 WILD-TYPE 
           0.99            0.92 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
          20.98           51.95 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
         15.455          10.920 
[1] "1.0 - 21.0 (15.5)" "0.9 - 52.0 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
[1] "hr=" "1.2"
D85V2, continuous
D85V3, binary
                 cls
clus               0  1
  NRXN3 MUTATED    7  8
  NRXN3 WILD-TYPE 70 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED      7    8
  NRXN3 WILD-TYPE   70   70
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  FEMALE             7              70
  MALE               8              70
D85V4, binary
                 cls
clus                0   1
  NRXN3 MUTATED    11   4
  NRXN3 WILD-TYPE 117  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     11    4
  NRXN3 WILD-TYPE  117   20
                               clus
vv                              NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  NRXN3 MUTATED    0  3 10  2
  NRXN3 WILD-TYPE  4 30 93 12
D85V5, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  T1             0               4
  T2             3              30
  T3            10              93
  T4             2              12
                 vv
clus              N0 N1 N2
  NRXN3 MUTATED   10  4  1
  NRXN3 WILD-TYPE 81 26 33
D85V6, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  N0            10              81
  N1             4              26
  N2             1              33
                 vv
clus               M0  M1 M1A
  NRXN3 MUTATED    14   0   0
  NRXN3 WILD-TYPE 116  21   1
D85V7, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  M0             14             116
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  NRXN3 MUTATED    2  7   5  0
  NRXN3 WILD-TYPE 28 50  39 21
D85V8, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  I               2              28
  II              7              50
  III             5              39
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  NRXN3 MUTATED    13   0   1   0
  NRXN3 WILD-TYPE 116   1  18   1
D85V9, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  R0            13             116
  R1             0               1
  R2             1              18
  RX             0               1
D85V10, continuous

Clustering(86) Variable = LIFR MUTATION ANALYSIS
D86V1, survival
                sevent
clus2             0  1
  LIFR MUTATED    5  2
  LIFR WILD-TYPE 63  9
  LIFR MUTATED LIFR WILD-TYPE 
             7             72 
  LIFR MUTATED LIFR WILD-TYPE 
             2              9 
$`LIFR MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
        1.02         0.99         1.02         1.02        18.02         4.01 
TCGA-AA-A010 
       20.98 

$`LIFR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  LIFR MUTATED LIFR WILD-TYPE 
          0.99           0.92 
  LIFR MUTATED LIFR WILD-TYPE 
         20.98          51.95 
  LIFR MUTATED LIFR WILD-TYPE 
          1.02          12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
[1] "hr=" "3.3"
D86V2, continuous
D86V3, binary
                cls
clus              0  1
  LIFR MUTATED    5  8
  LIFR WILD-TYPE 72 70
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED      5    8
  LIFR WILD-TYPE   72   70
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  FEMALE            5             72
  MALE              8             70
D86V4, binary
                cls
clus               0   1
  LIFR MUTATED    10   3
  LIFR WILD-TYPE 118  21
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     10    3
  LIFR WILD-TYPE  118   21
                               clus
vv                              LIFR MUTATED LIFR WILD-TYPE
  COLON ADENOCARCINOMA                    10            118
  COLON MUCINOUS ADENOCARCINOMA            3             21
                vv
clus             T1 T2 T3 T4
  LIFR MUTATED    1  3  6  3
  LIFR WILD-TYPE  3 30 97 11
D86V5, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  T1            1              3
  T2            3             30
  T3            6             97
  T4            3             11
                vv
clus             N0 N1 N2
  LIFR MUTATED    9  2  2
  LIFR WILD-TYPE 82 28 32
D86V6, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  N0            9             82
  N1            2             28
  N2            2             32
                vv
clus              M0  M1 M1A
  LIFR MUTATED    10   1   0
  LIFR WILD-TYPE 120  20   1
D86V7, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  M0            10            120
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  LIFR MUTATED    2  5   3  1
  LIFR WILD-TYPE 28 52  41 20
D86V8, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  I              2             28
  II             5             52
  III            3             41
  IV             1             20
                vv
clus              R0  R1  R2  RX
  LIFR MUTATED    10   0   2   0
  LIFR WILD-TYPE 119   1  17   1
D86V9, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  R0           10            119
  R1            0              1
  R2            2             17
  RX            0              1
D86V10, continuous

Clustering(87) Variable = ZNF429 MUTATION ANALYSIS
D87V1, survival
                  sevent
clus2               0  1
  ZNF429 MUTATED    5  1
  ZNF429 WILD-TYPE 63 10
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               6               73 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               1               10 
$`ZNF429 MUTATED`
TCGA-AA-3685 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01V 
        0.99         0.99         1.02         4.01        20.98        35.01 

$`ZNF429 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       38.07         1.02        35.01         1.02        33.04        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ZNF429 MUTATED ZNF429 WILD-TYPE 
            0.99             0.92 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
           35.01            51.95 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
           2.515           12.000 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
[1] "hr=" "1.7"
D87V2, continuous
D87V3, binary
                  cls
clus                0  1
  ZNF429 MUTATED    1  6
  ZNF429 WILD-TYPE 76 72
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      1    6
  ZNF429 WILD-TYPE   76   72
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  FEMALE              1               76
  MALE                6               72
D87V4, binary
                  cls
clus                 0   1
  ZNF429 MUTATED     6   1
  ZNF429 WILD-TYPE 122  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      6    1
  ZNF429 WILD-TYPE  122   23
                               clus
vv                              ZNF429 MUTATED ZNF429 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus                T1  T2  T3  T4
  ZNF429 MUTATED     0   3   2   2
  ZNF429 WILD-TYPE   4  30 101  12
D87V5, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              2              101
  T4              2               12
                  vv
clus               N0 N1 N2
  ZNF429 MUTATED    6  1  0
  ZNF429 WILD-TYPE 85 29 34
D87V6, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  N0              6               85
  N1              1               29
  N2              0               34
                  vv
clus                M0  M1 M1A
  ZNF429 MUTATED     6   0   0
  ZNF429 WILD-TYPE 124  21   1
D87V7, multiclass
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  ZNF429 MUTATED    2  3   1  0
  ZNF429 WILD-TYPE 28 54  43 21
D87V8, multiclass
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  I                2               28
  II               3               54
  III              1               43
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  ZNF429 MUTATED     6   0   0   0
  ZNF429 WILD-TYPE 123   1  19   1
D87V9, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  R0              6              123
  R1              0                1
  R2              0               19
  RX              0                1
D87V10, continuous

Clustering(88) Variable = OR2M2 MUTATION ANALYSIS
D88V1, survival
                 sevent
clus2              0  1
  OR2M2 MUTATED    3  2
  OR2M2 WILD-TYPE 65  9
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              5              74 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              2               9 
$`OR2M2 MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02F TCGA-AY-4071 
        1.02         4.01        20.98        39.95         0.95 

$`OR2M2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  OR2M2 MUTATED OR2M2 WILD-TYPE 
           0.95            0.92 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
          39.95           51.95 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
           4.01           12.00 
[1] "0.9 - 40.0 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" 
[1] "hr=" "2.6"
D88V2, continuous
D88V3, binary
                 cls
clus               0  1
  OR2M2 MUTATED    5  1
  OR2M2 WILD-TYPE 72 77
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    1
  OR2M2 WILD-TYPE   72   77
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  FEMALE             5              72
  MALE               1              77
D88V4, binary
                 cls
clus                0   1
  OR2M2 MUTATED     2   3
  OR2M2 WILD-TYPE 126  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      2    3
  OR2M2 WILD-TYPE  126   21
                               clus
vv                              OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON ADENOCARCINOMA                      2             126
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus               T1  T2  T3  T4
  OR2M2 MUTATED     1   0   3   2
  OR2M2 WILD-TYPE   3  33 100  12
D88V5, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             3             100
  T4             2              12
                 vv
clus              N0 N1 N2
  OR2M2 MUTATED    4  1  1
  OR2M2 WILD-TYPE 87 29 33
D88V6, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  N0             4              87
  N1             1              29
  N2             1              33
                 vv
clus               M0  M1 M1A
  OR2M2 MUTATED     3   2   0
  OR2M2 WILD-TYPE 127  19   1
D88V7, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  M0              3             127
  M1              2              19
  M1A             0               1
                 vv
clus               I II III IV
  OR2M2 MUTATED    1  3   0  2
  OR2M2 WILD-TYPE 29 54  44 19
D88V8, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  I               1              29
  II              3              54
  III             0              44
  IV              2              19
                 vv
clus               R0  R1  R2  RX
  OR2M2 MUTATED     3   0   2   0
  OR2M2 WILD-TYPE 126   1  17   1
D88V9, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  R0             3             126
  R1             0               1
  R2             2              17
  RX             0               1
D88V10, continuous

Clustering(89) Variable = TMEM132D MUTATION ANALYSIS
D89V1, survival
                    sevent
clus2                 0  1
  TMEM132D MUTATED   10  1
  TMEM132D WILD-TYPE 58 10
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                11                 68 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                 1                 10 
$`TMEM132D MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3844 TCGA-AA-3947 TCGA-AA-3949 
       16.54         1.02         0.99         0.92         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01R TCGA-AA-A01T 
        1.02         4.01         0.99        35.01        33.04 

$`TMEM132D WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01V 
       12.00        13.02        38.07         1.02         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  TMEM132D MUTATED TMEM132D WILD-TYPE 
              0.92               0.92 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
             35.01              51.95 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
              1.02              13.02 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 52.0 (13.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071 
"TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071 
"TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071 
"TMEM132D WILD-TYPE" 
[1] "hr=" "1.1"
D89V2, continuous
D89V3, binary
                    cls
clus                  0  1
  TMEM132D MUTATED   10  5
  TMEM132D WILD-TYPE 67 73
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     10    5
  TMEM132D WILD-TYPE   67   73
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  FEMALE               10                 67
  MALE                  5                 73
D89V4, binary
                    cls
clus                   0   1
  TMEM132D MUTATED    10   5
  TMEM132D WILD-TYPE 118  19
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     10    5
  TMEM132D WILD-TYPE  118   19
                               clus
vv                              TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON ADENOCARCINOMA                        10                118
  COLON MUCINOUS ADENOCARCINOMA                5                 19
                    vv
clus                 T1 T2 T3 T4
  TMEM132D MUTATED    0  2 11  2
  TMEM132D WILD-TYPE  4 31 92 12
D89V5, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  T1                0                  4
  T2                2                 31
  T3               11                 92
  T4                2                 12
                    vv
clus                 N0 N1 N2
  TMEM132D MUTATED    7  4  4
  TMEM132D WILD-TYPE 84 26 30
D89V6, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  N0                7                 84
  N1                4                 26
  N2                4                 30
                    vv
clus                  M0  M1 M1A
  TMEM132D MUTATED    14   0   0
  TMEM132D WILD-TYPE 116  21   1
D89V7, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  M0                14                116
  M1                 0                 21
  M1A                0                  1
                    vv
clus                  I II III IV
  TMEM132D MUTATED    1  5   8  0
  TMEM132D WILD-TYPE 29 52  36 21
D89V8, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  I                  1                 29
  II                 5                 52
  III                8                 36
  IV                 0                 21
                    vv
clus                  R0  R1  R2  RX
  TMEM132D MUTATED    13   0   0   0
  TMEM132D WILD-TYPE 116   1  19   1
D89V9, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  R0               13                116
  R1                0                  1
  R2                0                 19
  RX                0                  1
D89V10, continuous

Clustering(90) Variable = SAT1 MUTATION ANALYSIS
D90V1, survival
                sevent
clus2             0  1
  SAT1 MUTATED    2  0
  SAT1 WILD-TYPE 66 11
  SAT1 MUTATED SAT1 WILD-TYPE 
             2             77 
  SAT1 MUTATED SAT1 WILD-TYPE 
             0             11 
$`SAT1 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 
        0.99         0.99 

$`SAT1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99           0.92 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          51.95 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
[1] "Remove cluster labels:" "SAT1 MUTATED"          
clus
  SAT1 MUTATED SAT1 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3818 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3952     TCGA-AA-3966 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986     TCGA-AA-A004 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AY-4071 
"SAT1 WILD-TYPE" 
D90V2, continuous
D90V3, binary
                cls
clus              0  1
  SAT1 MUTATED    4  0
  SAT1 WILD-TYPE 73 78
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE   73   78
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  FEMALE            4             73
  MALE              0             78
D90V4, binary
                cls
clus               0   1
  SAT1 MUTATED     3   1
  SAT1 WILD-TYPE 125  23
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      3    1
  SAT1 WILD-TYPE  125   23
                               clus
vv                              SAT1 MUTATED SAT1 WILD-TYPE
  COLON ADENOCARCINOMA                     3            125
  COLON MUCINOUS ADENOCARCINOMA            1             23
                vv
clus              T1  T2  T3  T4
  SAT1 MUTATED     0   1   3   0
  SAT1 WILD-TYPE   4  32 100  14
D90V5, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            3            100
  T4            0             14
                vv
clus             N0 N1 N2
  SAT1 MUTATED    2  1  1
  SAT1 WILD-TYPE 89 29 33
D90V6, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  N0            2             89
  N1            1             29
  N2            1             33
                vv
clus              M0  M1 M1A
  SAT1 MUTATED     4   0   0
  SAT1 WILD-TYPE 126  21   1
D90V7, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  M0             4            126
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  SAT1 MUTATED    1  1   2  0
  SAT1 WILD-TYPE 29 56  42 21
D90V8, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  I              1             29
  II             1             56
  III            2             42
  IV             0             21
                vv
clus              R0  R1  R2  RX
  SAT1 MUTATED     4   0   0   0
  SAT1 WILD-TYPE 125   1  19   1
D90V9, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  R0            4            125
  R1            0              1
  R2            0             19
  RX            0              1
D90V10, continuous

Clustering(91) Variable = CDH18 MUTATION ANALYSIS
D91V1, survival
                 sevent
clus2              0  1
  CDH18 MUTATED    6  2
  CDH18 WILD-TYPE 62  9
  CDH18 MUTATED CDH18 WILD-TYPE 
              8              71 
  CDH18 MUTATED CDH18 WILD-TYPE 
              2               9 
$`CDH18 MUTATED`
TCGA-A6-2672 TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00N 
       16.54        10.92         1.02         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02J 
       20.98         5.03 

$`CDH18 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  CDH18 MUTATED CDH18 WILD-TYPE 
           0.99            0.92 
  CDH18 MUTATED CDH18 WILD-TYPE 
          20.98           51.95 
  CDH18 MUTATED CDH18 WILD-TYPE 
           4.52           13.02 
[1] "1.0 - 21.0 (4.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
[1] "hr=" "2.8"
D91V2, continuous
D91V3, binary
                 cls
clus               0  1
  CDH18 MUTATED    8  2
  CDH18 WILD-TYPE 69 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      8    2
  CDH18 WILD-TYPE   69   76
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE             8              69
  MALE               2              76
D91V4, binary
                 cls
clus                0   1
  CDH18 MUTATED     8   2
  CDH18 WILD-TYPE 120  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      8    2
  CDH18 WILD-TYPE  120   22
                               clus
vv                              CDH18 MUTATED CDH18 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  CDH18 MUTATED    0  1  6  3
  CDH18 WILD-TYPE  4 32 97 11
D91V5, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             6              97
  T4             3              11
                 vv
clus              N0 N1 N2
  CDH18 MUTATED    8  1  1
  CDH18 WILD-TYPE 83 29 33
D91V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  N0             8              83
  N1             1              29
  N2             1              33
                 vv
clus               M0  M1 M1A
  CDH18 MUTATED     9   1   0
  CDH18 WILD-TYPE 121  20   1
D91V7, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  M0              9             121
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  CDH18 MUTATED    1  6   2  1
  CDH18 WILD-TYPE 29 51  42 20
D91V8, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  I               1              29
  II              6              51
  III             2              42
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  CDH18 MUTATED     9   0   1   0
  CDH18 WILD-TYPE 120   1  18   1
D91V9, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  R0             9             120
  R1             0               1
  R2             1              18
  RX             0               1
D91V10, continuous

Clustering(92) Variable = P2RY10 MUTATION ANALYSIS
D92V1, survival
                  sevent
clus2               0  1
  P2RY10 MUTATED    4  1
  P2RY10 WILD-TYPE 64 10
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               5               74 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               1               10 
$`P2RY10 MUTATED`
TCGA-A6-2678 TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01F 
       14.37         0.99         1.02         4.01        13.02 

$`P2RY10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       20.98        15.02         0.99        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  P2RY10 MUTATED P2RY10 WILD-TYPE 
            0.99             0.92 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
           14.37            51.95 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 14.4 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
[1] "hr=" "2.5"
D92V2, continuous
D92V3, binary
                  cls
clus                0  1
  P2RY10 MUTATED    3  3
  P2RY10 WILD-TYPE 74 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      3    3
  P2RY10 WILD-TYPE   74   75
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  FEMALE              3               74
  MALE                3               75
D92V4, binary
                  cls
clus                 0   1
  P2RY10 MUTATED     4   2
  P2RY10 WILD-TYPE 124  22
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      4    2
  P2RY10 WILD-TYPE  124   22
                               clus
vv                              P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              2               22
                  vv
clus               T1 T2 T3 T4
  P2RY10 MUTATED    0  1  4  1
  P2RY10 WILD-TYPE  4 32 99 13
D92V5, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              4               99
  T4              1               13
                  vv
clus               N0 N1 N2
  P2RY10 MUTATED    4  2  0
  P2RY10 WILD-TYPE 87 28 34
D92V6, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  N0              4               87
  N1              2               28
  N2              0               34
                  vv
clus                M0  M1 M1A
  P2RY10 MUTATED     5   0   0
  P2RY10 WILD-TYPE 125  21   1
D92V7, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  M0               5              125
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  P2RY10 MUTATED    0  3   2  0
  P2RY10 WILD-TYPE 30 54  42 21
D92V8, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  I                0               30
  II               3               54
  III              2               42
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  P2RY10 MUTATED     5   0   0   0
  P2RY10 WILD-TYPE 124   1  19   1
D92V9, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  R0              5              124
  R1              0                1
  R2              0               19
  RX              0                1
D92V10, continuous

Clustering(93) Variable = SYT16 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2              0  1
  SYT16 MUTATED    4  0
  SYT16 WILD-TYPE 64 11
  SYT16 MUTATED SYT16 WILD-TYPE 
              4              75 
  SYT16 MUTATED SYT16 WILD-TYPE 
              0              11 
$`SYT16 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A01R 
        9.14         1.02         0.99        35.01 

$`SYT16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  SYT16 MUTATED SYT16 WILD-TYPE 
           0.99            0.92 
  SYT16 MUTATED SYT16 WILD-TYPE 
          35.01           51.95 
  SYT16 MUTATED SYT16 WILD-TYPE 
           5.08           12.00 
[1] "1.0 - 35.0 (5.1)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D93V2, continuous
D93V3, binary
                 cls
clus               0  1
  SYT16 MUTATED    2  4
  SYT16 WILD-TYPE 75 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      2    4
  SYT16 WILD-TYPE   75   74
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  FEMALE             2              75
  MALE               4              74
D93V4, binary
                 cls
clus                0   1
  SYT16 MUTATED     4   2
  SYT16 WILD-TYPE 124  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      4    2
  SYT16 WILD-TYPE  124   22
                               clus
vv                              SYT16 MUTATED SYT16 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  SYT16 MUTATED    0  1  5  0
  SYT16 WILD-TYPE  4 32 98 14
D93V5, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             5              98
  T4             0              14
                 vv
clus              N0 N1 N2
  SYT16 MUTATED    5  0  1
  SYT16 WILD-TYPE 86 30 33
D93V6, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  N0             5              86
  N1             0              30
  N2             1              33
                 vv
clus               M0  M1 M1A
  SYT16 MUTATED     6   0   0
  SYT16 WILD-TYPE 124  21   1
D93V7, multiclass
     clus
vv    SYT16 MUTATED SYT16 WILD-TYPE
  M0              6             124
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  SYT16 MUTATED    1  4   1  0
  SYT16 WILD-TYPE 29 53  43 21
D93V8, multiclass
     clus
vv    SYT16 MUTATED SYT16 WILD-TYPE
  I               1              29
  II              4              53
  III             1              43
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  SYT16 MUTATED     6   0   0   0
  SYT16 WILD-TYPE 123   1  19   1
D93V9, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  R0             6             123
  R1             0               1
  R2             0              19
  RX             0               1
D93V10, continuous

Clustering(94) Variable = DKK4 MUTATION ANALYSIS
D94V1, survival
                sevent
clus2             0  1
  DKK4 MUTATED    2  1
  DKK4 WILD-TYPE 66 10
  DKK4 MUTATED DKK4 WILD-TYPE 
             3             76 
  DKK4 MUTATED DKK4 WILD-TYPE 
             1             10 
$`DKK4 MUTATED`
TCGA-AA-3715 TCGA-AA-3854 TCGA-AA-A00N 
        0.99         1.02         4.01 

$`DKK4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  DKK4 MUTATED DKK4 WILD-TYPE 
          0.99           0.92 
  DKK4 MUTATED DKK4 WILD-TYPE 
          4.01          51.95 
  DKK4 MUTATED DKK4 WILD-TYPE 
          1.02          12.51 
[1] "1.0 - 4.0 (1.0)"   "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
[1] "hr=" "6.1"
D94V2, continuous
D94V3, binary
                cls
clus              0  1
  DKK4 MUTATED    2  2
  DKK4 WILD-TYPE 75 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      2    2
  DKK4 WILD-TYPE   75   76
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  FEMALE            2             75
  MALE              2             76
D94V4, binary
                cls
clus               0   1
  DKK4 MUTATED     2   2
  DKK4 WILD-TYPE 126  22
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      2    2
  DKK4 WILD-TYPE  126   22
                               clus
vv                              DKK4 MUTATED DKK4 WILD-TYPE
  COLON ADENOCARCINOMA                     2            126
  COLON MUCINOUS ADENOCARCINOMA            2             22
                vv
clus              T1  T2  T3  T4
  DKK4 MUTATED     0   1   2   1
  DKK4 WILD-TYPE   4  32 101  13
D94V5, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            2            101
  T4            1             13
                vv
clus             N0 N1 N2
  DKK4 MUTATED    4  0  0
  DKK4 WILD-TYPE 87 30 34
D94V6, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  N0            4             87
  N1            0             30
  N2            0             34
                vv
clus              M0  M1 M1A
  DKK4 MUTATED     4   0   0
  DKK4 WILD-TYPE 126  21   1
D94V7, multiclass
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  M0             4            126
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  DKK4 MUTATED    1  3   0  0
  DKK4 WILD-TYPE 29 54  44 21
D94V8, multiclass
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  I              1             29
  II             3             54
  III            0             44
  IV             0             21
                vv
clus              R0  R1  R2  RX
  DKK4 MUTATED     4   0   0   0
  DKK4 WILD-TYPE 125   1  19   1
D94V9, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  R0            4            125
  R1            0              1
  R2            0             19
  RX            0              1
D94V10, continuous

Clustering(95) Variable = NALCN MUTATION ANALYSIS
D95V1, survival
                 sevent
clus2              0  1
  NALCN MUTATED    8  0
  NALCN WILD-TYPE 60 11
  NALCN MUTATED NALCN WILD-TYPE 
              8              71 
  NALCN MUTATED NALCN WILD-TYPE 
              0              11 
$`NALCN MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A010 
       16.54         0.99         0.99         1.02        30.02        20.98 
TCGA-AA-A01Q TCGA-AA-A01Z 
        1.02        20.98 

$`NALCN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
       35.01         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  NALCN MUTATED NALCN WILD-TYPE 
           0.99            0.92 
  NALCN MUTATED NALCN WILD-TYPE 
          30.02           51.95 
  NALCN MUTATED NALCN WILD-TYPE 
           8.78           12.00 
[1] "1.0 - 30.0 (8.8)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
[1] "hr="     "7.9e+07"
D95V2, continuous
D95V3, binary
                 cls
clus               0  1
  NALCN MUTATED    7  7
  NALCN WILD-TYPE 70 71
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED      7    7
  NALCN WILD-TYPE   70   71
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  FEMALE             7              70
  MALE               7              71
D95V4, binary
                 cls
clus                0   1
  NALCN MUTATED    12   1
  NALCN WILD-TYPE 116  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     12    1
  NALCN WILD-TYPE  116   23
                               clus
vv                              NALCN MUTATED NALCN WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus              T1 T2 T3 T4
  NALCN MUTATED    0  2 10  2
  NALCN WILD-TYPE  4 31 93 12
D95V5, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  T1             0               4
  T2             2              31
  T3            10              93
  T4             2              12
                 vv
clus              N0 N1 N2
  NALCN MUTATED   12  1  1
  NALCN WILD-TYPE 79 29 33
D95V6, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  N0            12              79
  N1             1              29
  N2             1              33
                 vv
clus               M0  M1 M1A
  NALCN MUTATED    12   0   0
  NALCN WILD-TYPE 118  21   1
D95V7, multiclass
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  M0             12             118
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  NALCN MUTATED    0 10   2  0
  NALCN WILD-TYPE 30 47  42 21
D95V8, multiclass
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  I               0              30
  II             10              47
  III             2              42
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  NALCN MUTATED    12   0   1   0
  NALCN WILD-TYPE 117   1  18   1
D95V9, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  R0            12             117
  R1             0               1
  R2             1              18
  RX             0               1
D95V10, continuous

Clustering(96) Variable = SULT1C4 MUTATION ANALYSIS
D96V1, survival
                   sevent
clus2                0  1
  SULT1C4 MUTATED    2  1
  SULT1C4 WILD-TYPE 66 10
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                3                76 
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
                1                10 
$`SULT1C4 MUTATED`
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-A00N 
        0.99         0.99         4.01 

$`SULT1C4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         1.02         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
             0.99              0.92 
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
             4.01             51.95 
  SULT1C4 MUTATED SULT1C4 WILD-TYPE 
             0.99             12.51 
[1] "1.0 - 4.0 (1.0)"   "0.9 - 52.0 (12.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SULT1C4 WILD-TYPE"   "SULT1C4 MUTATED" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" "SULT1C4 WILD-TYPE" 
[1] "hr=" "7.6"
D96V2, continuous
D96V3, binary
                   cls
clus                 0  1
  SULT1C4 MUTATED    1  2
  SULT1C4 WILD-TYPE 76 76
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C4 MUTATED      1    2
  SULT1C4 WILD-TYPE   76   76
        clus
vv       SULT1C4 MUTATED SULT1C4 WILD-TYPE
  FEMALE               1                76
  MALE                 2                76
D96V4, binary
                   cls
clus                  0   1
  SULT1C4 MUTATED     1   2
  SULT1C4 WILD-TYPE 127  22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SULT1C4 MUTATED      1    2
  SULT1C4 WILD-TYPE  127   22
                               clus
vv                              SULT1C4 MUTATED SULT1C4 WILD-TYPE
  COLON ADENOCARCINOMA                        1               127
  COLON MUCINOUS ADENOCARCINOMA               2                22
                   vv
clus                 T1  T2  T3  T4
  SULT1C4 MUTATED     0   1   1   1
  SULT1C4 WILD-TYPE   4  32 102  13
D96V5, multiclass
    clus
vv   SULT1C4 MUTATED SULT1C4 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               1               102
  T4               1                13
                   vv
clus                N0 N1 N2
  SULT1C4 MUTATED    3  0  0
  SULT1C4 WILD-TYPE 88 30 34
D96V6, multiclass
    clus
vv   SULT1C4 MUTATED SULT1C4 WILD-TYPE
  N0               3                88
  N1               0                30
  N2               0                34
                   vv
clus                 M0  M1 M1A
  SULT1C4 MUTATED     3   0   0
  SULT1C4 WILD-TYPE 127  21   1
D96V7, multiclass
     clus
vv    SULT1C4 MUTATED SULT1C4 WILD-TYPE
  M0                3               127
  M1                0                21
  M1A               0                 1
                   vv
clus                 I II III IV
  SULT1C4 MUTATED    1  2   0  0
  SULT1C4 WILD-TYPE 29 55  44 21
D96V8, multiclass
     clus
vv    SULT1C4 MUTATED SULT1C4 WILD-TYPE
  I                 1                29
  II                2                55
  III               0                44
  IV                0                21
                   vv
clus                 R0  R1  R2  RX
  SULT1C4 MUTATED     3   0   0   0
  SULT1C4 WILD-TYPE 126   1  19   1
D96V9, multiclass
    clus
vv   SULT1C4 MUTATED SULT1C4 WILD-TYPE
  R0               3               126
  R1               0                 1
  R2               0                19
  RX               0                 1
D96V10, continuous

Clustering(97) Variable = UMOD MUTATION ANALYSIS
D97V1, survival
                sevent
clus2             0  1
  UMOD MUTATED    4  1
  UMOD WILD-TYPE 64 10
  UMOD MUTATED UMOD WILD-TYPE 
             5             74 
  UMOD MUTATED UMOD WILD-TYPE 
             1             10 
$`UMOD MUTATED`
TCGA-AA-3837 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A017 
        1.02         4.01         0.99        20.98        15.02 

$`UMOD WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       21.99         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  UMOD MUTATED UMOD WILD-TYPE 
          0.99           0.92 
  UMOD MUTATED UMOD WILD-TYPE 
         20.98          51.95 
  UMOD MUTATED UMOD WILD-TYPE 
          4.01          12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "UMOD MUTATED"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "UMOD MUTATED"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"UMOD WILD-TYPE"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "UMOD MUTATED"   "UMOD MUTATED" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"UMOD WILD-TYPE" "UMOD WILD-TYPE" "UMOD WILD-TYPE" 
[1] "hr=" "2"  
D97V2, continuous
D97V3, binary
                cls
clus              0  1
  UMOD MUTATED    3  4
  UMOD WILD-TYPE 74 74
[1] "tbl2"
                cls
clus             [,1] [,2]
  UMOD MUTATED      3    4
  UMOD WILD-TYPE   74   74
        clus
vv       UMOD MUTATED UMOD WILD-TYPE
  FEMALE            3             74
  MALE              4             74
D97V4, binary
                cls
clus               0   1
  UMOD MUTATED     5   2
  UMOD WILD-TYPE 123  22
[1] "tbl2"
                cls
clus             [,1] [,2]
  UMOD MUTATED      5    2
  UMOD WILD-TYPE  123   22
                               clus
vv                              UMOD MUTATED UMOD WILD-TYPE
  COLON ADENOCARCINOMA                     5            123
  COLON MUCINOUS ADENOCARCINOMA            2             22
                vv
clus             T1 T2 T3 T4
  UMOD MUTATED    0  1  4  2
  UMOD WILD-TYPE  4 32 99 12
D97V5, multiclass
    clus
vv   UMOD MUTATED UMOD WILD-TYPE
  T1            0              4
  T2            1             32
  T3            4             99
  T4            2             12
                vv
clus             N0 N1 N2
  UMOD MUTATED    6  1  0
  UMOD WILD-TYPE 85 29 34
D97V6, multiclass
    clus
vv   UMOD MUTATED UMOD WILD-TYPE
  N0            6             85
  N1            1             29
  N2            0             34
                vv
clus              M0  M1 M1A
  UMOD MUTATED     7   0   0
  UMOD WILD-TYPE 123  21   1
D97V7, multiclass
     clus
vv    UMOD MUTATED UMOD WILD-TYPE
  M0             7            123
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  UMOD MUTATED    1  5   1  0
  UMOD WILD-TYPE 29 52  43 21
D97V8, multiclass
     clus
vv    UMOD MUTATED UMOD WILD-TYPE
  I              1             29
  II             5             52
  III            1             43
  IV             0             21
                vv
clus              R0  R1  R2  RX
  UMOD MUTATED     7   0   0   0
  UMOD WILD-TYPE 122   1  19   1
D97V9, multiclass
    clus
vv   UMOD MUTATED UMOD WILD-TYPE
  R0            7            122
  R1            0              1
  R2            0             19
  RX            0              1
D97V10, continuous

Clustering(98) Variable = CPXCR1 MUTATION ANALYSIS
D98V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    6  0
  CPXCR1 WILD-TYPE 62 11
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6               73 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               0               11 
$`CPXCR1 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3842 TCGA-AA-A010 TCGA-AA-A01T TCGA-AA-A01X 
       16.54         0.99         1.02        20.98        33.04        26.01 

$`CPXCR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            0.99             0.92 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           33.04            51.95 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           18.76            10.92 
[1] "1.0 - 33.0 (18.8)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D98V2, continuous
D98V3, binary
                  cls
clus                0  1
  CPXCR1 MUTATED    5  1
  CPXCR1 WILD-TYPE 72 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      5    1
  CPXCR1 WILD-TYPE   72   77
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              5               72
  MALE                1               77
D98V4, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     5   1
  CPXCR1 WILD-TYPE 123  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      5    1
  CPXCR1 WILD-TYPE  123   23
                               clus
vv                              CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON ADENOCARCINOMA                       5              123
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus                T1  T2  T3  T4
  CPXCR1 MUTATED     0   2   3   1
  CPXCR1 WILD-TYPE   4  31 100  13
D98V5, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              3              100
  T4              1               13
                  vv
clus               N0 N1 N2
  CPXCR1 MUTATED    2  4  0
  CPXCR1 WILD-TYPE 89 26 34
D98V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              2               89
  N1              4               26
  N2              0               34
                  vv
clus                M0  M1 M1A
  CPXCR1 MUTATED     6   0   0
  CPXCR1 WILD-TYPE 124  21   1
D98V7, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  CPXCR1 MUTATED    0  2   4  0
  CPXCR1 WILD-TYPE 30 55  40 21
D98V8, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                0               30
  II               2               55
  III              4               40
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  CPXCR1 MUTATED     5   0   0   1
  CPXCR1 WILD-TYPE 124   1  19   0
D98V9, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  R0              5              124
  R1              0                1
  R2              0               19
  RX              1                0
D98V10, continuous

Clustering(99) Variable = PDZRN4 MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2               0  1
  PDZRN4 MUTATED    6  1
  PDZRN4 WILD-TYPE 62 10
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               7               72 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               1               10 
$`PDZRN4 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00A TCGA-AA-A00N 
       16.54         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A010 
       20.98 

$`PDZRN4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            0.99             0.92 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           20.98            51.95 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
[1] "hr=" "1.3"
D99V2, continuous
D99V3, binary
                  cls
clus                0  1
  PDZRN4 MUTATED    8  4
  PDZRN4 WILD-TYPE 69 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      8    4
  PDZRN4 WILD-TYPE   69   74
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              8               69
  MALE                4               74
D99V4, binary
                  cls
clus                 0   1
  PDZRN4 MUTATED     6   6
  PDZRN4 WILD-TYPE 122  18
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      6    6
  PDZRN4 WILD-TYPE  122   18
                               clus
vv                              PDZRN4 MUTATED PDZRN4 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              6               18
                  vv
clus               T1 T2 T3 T4
  PDZRN4 MUTATED    0  2  7  3
  PDZRN4 WILD-TYPE  4 31 96 11
D99V5, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              7               96
  T4              3               11
                  vv
clus               N0 N1 N2
  PDZRN4 MUTATED    8  3  1
  PDZRN4 WILD-TYPE 83 27 33
D99V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0              8               83
  N1              3               27
  N2              1               33
                  vv
clus                M0  M1 M1A
  PDZRN4 MUTATED    11   1   0
  PDZRN4 WILD-TYPE 119  20   1
D99V7, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0              11              119
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  PDZRN4 MUTATED    2  6   3  1
  PDZRN4 WILD-TYPE 28 51  41 20
D99V8, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  I                2               28
  II               6               51
  III              3               41
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  PDZRN4 MUTATED    10   0   1   0
  PDZRN4 WILD-TYPE 119   1  18   1
D99V9, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  R0             10              119
  R1              0                1
  R2              1               18
  RX              0                1
D99V10, continuous

Clustering(100) Variable = USP17L2 MUTATION ANALYSIS
D100V1, survival
                   sevent
clus2                0  1
  USP17L2 MUTATED    6  0
  USP17L2 WILD-TYPE 62 11
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                6                73 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                0                11 
$`USP17L2 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3975 TCGA-AA-A010 TCGA-AA-A02W 
        9.14         1.02         0.99         0.99        20.98        40.96 

$`USP17L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  USP17L2 MUTATED USP17L2 WILD-TYPE 
             0.99              0.92 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
            40.96             51.95 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
             5.08             12.00 
[1] "1.0 - 41.0 (5.1)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D100V2, continuous
D100V3, binary
                   cls
clus                 0  1
  USP17L2 MUTATED    3  4
  USP17L2 WILD-TYPE 74 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      3    4
  USP17L2 WILD-TYPE   74   74
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  FEMALE               3                74
  MALE                 4                74
D100V4, binary
                   cls
clus                  0   1
  USP17L2 MUTATED     6   1
  USP17L2 WILD-TYPE 122  23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      6    1
  USP17L2 WILD-TYPE  122   23
                               clus
vv                              USP17L2 MUTATED USP17L2 WILD-TYPE
  COLON ADENOCARCINOMA                        6               122
  COLON MUCINOUS ADENOCARCINOMA               1                23
                   vv
clus                T1 T2 T3 T4
  USP17L2 MUTATED    0  2  4  1
  USP17L2 WILD-TYPE  4 31 99 13
D100V5, multiclass
    clus
vv   USP17L2 MUTATED USP17L2 WILD-TYPE
  T1               0                 4
  T2               2                31
  T3               4                99
  T4               1                13
                   vv
clus                N0 N1 N2
  USP17L2 MUTATED    7  0  0
  USP17L2 WILD-TYPE 84 30 34
D100V6, multiclass
    clus
vv   USP17L2 MUTATED USP17L2 WILD-TYPE
  N0               7                84
  N1               0                30
  N2               0                34
                   vv
clus                 M0  M1 M1A
  USP17L2 MUTATED     7   0   0
  USP17L2 WILD-TYPE 123  21   1
D100V7, multiclass
     clus
vv    USP17L2 MUTATED USP17L2 WILD-TYPE
  M0                7               123
  M1                0                21
  M1A               0                 1
                   vv
clus                 I II III IV
  USP17L2 MUTATED    2  5   0  0
  USP17L2 WILD-TYPE 28 52  44 21
D100V8, multiclass
     clus
vv    USP17L2 MUTATED USP17L2 WILD-TYPE
  I                 2                28
  II                5                52
  III               0                44
  IV                0                21
                   vv
clus                 R0  R1  R2  RX
  USP17L2 MUTATED     7   0   0   0
  USP17L2 WILD-TYPE 122   1  19   1
D100V9, multiclass
    clus
vv   USP17L2 MUTATED USP17L2 WILD-TYPE
  R0               7               122
  R1               0                 1
  R2               0                19
  RX               0                 1
D100V10, continuous

Clustering(101) Variable = ESR1 MUTATION ANALYSIS
D101V1, survival
                sevent
clus2             0  1
  ESR1 MUTATED    5  1
  ESR1 WILD-TYPE 63 10
  ESR1 MUTATED ESR1 WILD-TYPE 
             6             73 
  ESR1 MUTATED ESR1 WILD-TYPE 
             1             10 
$`ESR1 MUTATED`
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q 
        0.99         0.99         1.02         4.01        20.98         1.02 

$`ESR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ESR1 MUTATED ESR1 WILD-TYPE 
          0.99           0.92 
  ESR1 MUTATED ESR1 WILD-TYPE 
         20.98          51.95 
  ESR1 MUTATED ESR1 WILD-TYPE 
          1.02          13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
[1] "hr=" "2.2"
D101V2, continuous
D101V3, binary
                cls
clus              0  1
  ESR1 MUTATED    5  6
  ESR1 WILD-TYPE 72 72
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED      5    6
  ESR1 WILD-TYPE   72   72
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  FEMALE            5             72
  MALE              6             72
D101V4, binary
                cls
clus               0   1
  ESR1 MUTATED     8   3
  ESR1 WILD-TYPE 120  21
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED      8    3
  ESR1 WILD-TYPE  120   21
                               clus
vv                              ESR1 MUTATED ESR1 WILD-TYPE
  COLON ADENOCARCINOMA                     8            120
  COLON MUCINOUS ADENOCARCINOMA            3             21
                vv
clus             T1 T2 T3 T4
  ESR1 MUTATED    0  2  5  4
  ESR1 WILD-TYPE  4 31 98 10
D101V5, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  T1            0              4
  T2            2             31
  T3            5             98
  T4            4             10
                vv
clus             N0 N1 N2
  ESR1 MUTATED    7  3  1
  ESR1 WILD-TYPE 84 27 33
D101V6, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  N0            7             84
  N1            3             27
  N2            1             33
                vv
clus              M0  M1 M1A
  ESR1 MUTATED    10   0   0
  ESR1 WILD-TYPE 120  21   1
D101V7, multiclass
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  M0            10            120
  M1             0             21
  M1A            0              1
                vv
clus              I II III IV
  ESR1 MUTATED    1  5   4  0
  ESR1 WILD-TYPE 29 52  40 21
D101V8, multiclass
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  I              1             29
  II             5             52
  III            4             40
  IV             0             21
                vv
clus              R0  R1  R2  RX
  ESR1 MUTATED     9   0   0   0
  ESR1 WILD-TYPE 120   1  19   1
D101V9, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  R0            9            120
  R1            0              1
  R2            0             19
  RX            0              1
D101V10, continuous

Clustering(102) Variable = FAM5C MUTATION ANALYSIS
D102V1, survival
                 sevent
clus2              0  1
  FAM5C MUTATED    4  3
  FAM5C WILD-TYPE 64  8
  FAM5C MUTATED FAM5C WILD-TYPE 
              7              72 
  FAM5C MUTATED FAM5C WILD-TYPE 
              3               8 
$`FAM5C MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01P 
       38.07 

$`FAM5C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  FAM5C MUTATED FAM5C WILD-TYPE 
           0.99            0.92 
  FAM5C MUTATED FAM5C WILD-TYPE 
          38.07           51.95 
  FAM5C MUTATED FAM5C WILD-TYPE 
           1.02           12.51 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "4.8"
D102V2, continuous
D102V3, binary
                 cls
clus               0  1
  FAM5C MUTATED    7  3
  FAM5C WILD-TYPE 70 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      7    3
  FAM5C WILD-TYPE   70   75
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             7              70
  MALE               3              75
D102V4, binary
                 cls
clus                0   1
  FAM5C MUTATED     7   3
  FAM5C WILD-TYPE 121  21
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      7    3
  FAM5C WILD-TYPE  121   21
                               clus
vv                              FAM5C MUTATED FAM5C WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             3              21
                 vv
clus              T1 T2 T3 T4
  FAM5C MUTATED    0  2  5  3
  FAM5C WILD-TYPE  4 31 98 11
D102V5, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             3              11
                 vv
clus              N0 N1 N2
  FAM5C MUTATED    9  1  0
  FAM5C WILD-TYPE 82 29 34
D102V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0             9              82
  N1             1              29
  N2             0              34
                 vv
clus               M0  M1 M1A
  FAM5C MUTATED     9   0   0
  FAM5C WILD-TYPE 121  21   1
D102V7, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  M0              9             121
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  FAM5C MUTATED    1  7   1  0
  FAM5C WILD-TYPE 29 50  43 21
D102V8, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  I               1              29
  II              7              50
  III             1              43
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  FAM5C MUTATED     8   0   0   0
  FAM5C WILD-TYPE 121   1  19   1
D102V9, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  R0             8             121
  R1             0               1
  R2             0              19
  RX             0               1
D102V10, continuous

Clustering(103) Variable = MIER3 MUTATION ANALYSIS
D103V1, survival
                 sevent
clus2              0  1
  MIER3 MUTATED    6  0
  MIER3 WILD-TYPE 62 11
  MIER3 MUTATED MIER3 WILD-TYPE 
              6              73 
  MIER3 MUTATED MIER3 WILD-TYPE 
              0              11 
$`MIER3 MUTATED`
TCGA-A6-2672 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A010 
       16.54         0.99         0.99         0.99         1.02        20.98 

$`MIER3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         8.09         1.02         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  MIER3 MUTATED MIER3 WILD-TYPE 
           0.99            0.92 
  MIER3 MUTATED MIER3 WILD-TYPE 
          20.98           51.95 
  MIER3 MUTATED MIER3 WILD-TYPE 
          1.005          12.000 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D103V2, continuous
D103V3, binary
                 cls
clus               0  1
  MIER3 MUTATED    6  4
  MIER3 WILD-TYPE 71 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED      6    4
  MIER3 WILD-TYPE   71   74
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  FEMALE             6              71
  MALE               4              74
D103V4, binary
                 cls
clus                0   1
  MIER3 MUTATED     9   1
  MIER3 WILD-TYPE 119  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED      9    1
  MIER3 WILD-TYPE  119   23
                               clus
vv                              MIER3 MUTATED MIER3 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus              T1 T2 T3 T4
  MIER3 MUTATED    0  2  6  2
  MIER3 WILD-TYPE  4 31 97 12
D103V5, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             6              97
  T4             2              12
                 vv
clus              N0 N1 N2
  MIER3 MUTATED    8  2  0
  MIER3 WILD-TYPE 83 28 34
D103V6, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             0              34
                 vv
clus               M0  M1 M1A
  MIER3 MUTATED     9   0   0
  MIER3 WILD-TYPE 121  21   1
D103V7, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  M0              9             121
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  MIER3 MUTATED    1  6   2  0
  MIER3 WILD-TYPE 29 51  42 21
D103V8, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  I               1              29
  II              6              51
  III             2              42
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  MIER3 MUTATED     9   0   0   0
  MIER3 WILD-TYPE 120   1  19   1
D103V9, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  R0             9             120
  R1             0               1
  R2             0              19
  RX             0               1
D103V10, continuous

Clustering(104) Variable = NLRP5 MUTATION ANALYSIS
D104V1, survival
                 sevent
clus2              0  1
  NLRP5 MUTATED    4  1
  NLRP5 WILD-TYPE 64 10
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              5              74 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              1              10 
$`NLRP5 MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01R TCGA-AA-A02O 
        4.01        20.98        12.00        35.01         0.92 

$`NLRP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  NLRP5 MUTATED NLRP5 WILD-TYPE 
           0.92            0.92 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          35.01           51.95 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          12.00           11.46 
[1] "0.9 - 35.0 (12.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
[1] "hr=" "1.6"
D104V2, continuous
D104V3, binary
                 cls
clus               0  1
  NLRP5 MUTATED    4  6
  NLRP5 WILD-TYPE 73 72
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED      4    6
  NLRP5 WILD-TYPE   73   72
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  FEMALE             4              73
  MALE               6              72
D104V4, binary
                 cls
clus                0   1
  NLRP5 MUTATED     7   2
  NLRP5 WILD-TYPE 121  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED      7    2
  NLRP5 WILD-TYPE  121   22
                               clus
vv                              NLRP5 MUTATED NLRP5 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  NLRP5 MUTATED    0  2  6  2
  NLRP5 WILD-TYPE  4 31 97 12
D104V5, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             6              97
  T4             2              12
                 vv
clus              N0 N1 N2
  NLRP5 MUTATED    8  0  2
  NLRP5 WILD-TYPE 83 30 32
D104V6, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  N0             8              83
  N1             0              30
  N2             2              32
                 vv
clus               M0  M1 M1A
  NLRP5 MUTATED     9   1   0
  NLRP5 WILD-TYPE 121  20   1
D104V7, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  M0              9             121
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  NLRP5 MUTATED    2  6   1  1
  NLRP5 WILD-TYPE 28 51  43 20
D104V8, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  I               2              28
  II              6              51
  III             1              43
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  NLRP5 MUTATED    10   0   0   0
  NLRP5 WILD-TYPE 119   1  19   1
D104V9, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  R0            10             119
  R1             0               1
  R2             0              19
  RX             0               1
D104V10, continuous

Clustering(105) Variable = OR6T1 MUTATION ANALYSIS
D105V1, survival
                 sevent
clus2              0  1
  OR6T1 MUTATED    3  0
  OR6T1 WILD-TYPE 65 11
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              3              76 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              0              11 
$`OR6T1 MUTATED`
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00L 
        1.02        30.02        17.00 

$`OR6T1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  OR6T1 MUTATED OR6T1 WILD-TYPE 
           1.02            0.92 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
          30.02           51.95 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
          17.00           11.46 
[1] "1.0 - 30.0 (17.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D105V2, continuous
D105V3, binary
                 cls
clus               0  1
  OR6T1 MUTATED    2  4
  OR6T1 WILD-TYPE 75 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      2    4
  OR6T1 WILD-TYPE   75   74
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  FEMALE             2              75
  MALE               4              74
D105V4, binary
                 cls
clus                0   1
  OR6T1 MUTATED     5   1
  OR6T1 WILD-TYPE 123  23
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      5    1
  OR6T1 WILD-TYPE  123   23
                               clus
vv                              OR6T1 MUTATED OR6T1 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             1              23
                 vv
clus              T1 T2 T3 T4
  OR6T1 MUTATED    0  1  4  1
  OR6T1 WILD-TYPE  4 32 99 13
D105V5, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             4              99
  T4             1              13
                 vv
clus              N0 N1 N2
  OR6T1 MUTATED    5  0  1
  OR6T1 WILD-TYPE 86 30 33
D105V6, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  N0             5              86
  N1             0              30
  N2             1              33
                 vv
clus               M0  M1 M1A
  OR6T1 MUTATED     4   1   0
  OR6T1 WILD-TYPE 126  20   1
D105V7, multiclass
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  M0              4             126
  M1              1              20
  M1A             0               1
                 vv
clus               I II III IV
  OR6T1 MUTATED    0  4   0  1
  OR6T1 WILD-TYPE 30 53  44 20
D105V8, multiclass
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  I               0              30
  II              4              53
  III             0              44
  IV              1              20
                 vv
clus               R0  R1  R2  RX
  OR6T1 MUTATED     4   0   1   0
  OR6T1 WILD-TYPE 125   1  18   1
D105V9, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  R0             4             125
  R1             0               1
  R2             1              18
  RX             0               1
D105V10, continuous

Clustering(106) Variable = PCDH10 MUTATION ANALYSIS
D106V1, survival
                  sevent
clus2               0  1
  PCDH10 MUTATED   11  0
  PCDH10 WILD-TYPE 57 11
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              11               68 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
               0               11 
$`PCDH10 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-3949 
       16.54        14.70         1.02         0.99         0.99         0.99 
TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01K TCGA-AA-A01V 
       18.02        20.98        15.02        13.02        35.01 

$`PCDH10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  PCDH10 MUTATED PCDH10 WILD-TYPE 
            0.99             0.92 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
           35.01            51.95 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
           14.70            10.03 
[1] "1.0 - 35.0 (14.7)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
[1] "hr="     "8.4e+07"
D106V2, continuous
D106V3, binary
                  cls
clus                0  1
  PCDH10 MUTATED   10  4
  PCDH10 WILD-TYPE 67 74
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     10    4
  PCDH10 WILD-TYPE   67   74
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  FEMALE             10               67
  MALE                4               74
D106V4, binary
                  cls
clus                 0   1
  PCDH10 MUTATED    10   4
  PCDH10 WILD-TYPE 118  20
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     10    4
  PCDH10 WILD-TYPE  118   20
                               clus
vv                              PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              4               20
                  vv
clus               T1 T2 T3 T4
  PCDH10 MUTATED    0  1 10  2
  PCDH10 WILD-TYPE  4 32 93 12
D106V5, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  T1              0                4
  T2              1               32
  T3             10               93
  T4              2               12
                  vv
clus               N0 N1 N2
  PCDH10 MUTATED    7  4  3
  PCDH10 WILD-TYPE 84 26 31
D106V6, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  N0              7               84
  N1              4               26
  N2              3               31
                  vv
clus                M0  M1 M1A
  PCDH10 MUTATED    13   1   0
  PCDH10 WILD-TYPE 117  20   1
D106V7, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  M0              13              117
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  PCDH10 MUTATED    1  6   6  1
  PCDH10 WILD-TYPE 29 51  38 20
D106V8, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  I                1               29
  II               6               51
  III              6               38
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  PCDH10 MUTATED    12   0   1   0
  PCDH10 WILD-TYPE 117   1  18   1
D106V9, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  R0             12              117
  R1              0                1
  R2              1               18
  RX              0                1
D106V10, continuous

Clustering(107) Variable = PCDHB5 MUTATION ANALYSIS
D107V1, survival
                  sevent
clus2               0  1
  PCDHB5 MUTATED    3  2
  PCDHB5 WILD-TYPE 65  9
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               5               74 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               2                9 
$`PCDHB5 MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99        18.02         4.01        20.98 

$`PCDHB5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            0.99             0.92 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
           20.98            51.95 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
[1] "hr=" "4.3"
D107V2, continuous
D107V3, binary
                  cls
clus                0  1
  PCDHB5 MUTATED    9  3
  PCDHB5 WILD-TYPE 68 75
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED      9    3
  PCDHB5 WILD-TYPE   68   75
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  FEMALE              9               68
  MALE                3               75
D107V4, binary
                  cls
clus                 0   1
  PCDHB5 MUTATED    10   2
  PCDHB5 WILD-TYPE 118  22
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     10    2
  PCDHB5 WILD-TYPE  118   22
                               clus
vv                              PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              2               22
                  vv
clus               T1 T2 T3 T4
  PCDHB5 MUTATED    0  1  8  3
  PCDHB5 WILD-TYPE  4 32 95 11
D107V5, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              8               95
  T4              3               11
                  vv
clus               N0 N1 N2
  PCDHB5 MUTATED    9  2  1
  PCDHB5 WILD-TYPE 82 28 33
D107V6, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  N0              9               82
  N1              2               28
  N2              1               33
                  vv
clus                M0  M1 M1A
  PCDHB5 MUTATED    11   1   0
  PCDHB5 WILD-TYPE 119  20   1
D107V7, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  M0              11              119
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  PCDHB5 MUTATED    0  9   2  1
  PCDHB5 WILD-TYPE 30 48  42 20
D107V8, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  I                0               30
  II               9               48
  III              2               42
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  PCDHB5 MUTATED    12   0   0   0
  PCDHB5 WILD-TYPE 117   1  19   1
D107V9, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  R0             12              117
  R1              0                1
  R2              0               19
  RX              0                1
D107V10, continuous

Clustering(108) Variable = TRPC6 MUTATION ANALYSIS
D108V1, survival
                 sevent
clus2              0  1
  TRPC6 MUTATED    6  0
  TRPC6 WILD-TYPE 62 11
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              6              73 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
              0              11 
$`TRPC6 MUTATED`
TCGA-AA-3846 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00L TCGA-AA-A010 TCGA-AA-A01R 
        0.99        18.02        30.02        17.00        20.98        35.01 

$`TRPC6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N 
       13.94        19.00        34.03        18.02        18.02         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  TRPC6 MUTATED TRPC6 WILD-TYPE 
           0.99            0.92 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
          35.01           51.95 
  TRPC6 MUTATED TRPC6 WILD-TYPE 
          19.50            9.14 
[1] "1.0 - 35.0 (19.5)" "0.9 - 52.0 (9.1)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC6 WILD-TYPE"   "TRPC6 MUTATED" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" "TRPC6 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D108V2, continuous
D108V3, binary
                 cls
clus               0  1
  TRPC6 MUTATED    4  4
  TRPC6 WILD-TYPE 73 74
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED      4    4
  TRPC6 WILD-TYPE   73   74
        clus
vv       TRPC6 MUTATED TRPC6 WILD-TYPE
  FEMALE             4              73
  MALE               4              74
D108V4, binary
                 cls
clus                0   1
  TRPC6 MUTATED     6   2
  TRPC6 WILD-TYPE 122  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC6 MUTATED      6    2
  TRPC6 WILD-TYPE  122   22
                               clus
vv                              TRPC6 MUTATED TRPC6 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  TRPC6 MUTATED    0  0  7  1
  TRPC6 WILD-TYPE  4 33 96 13
D108V5, multiclass
    clus
vv   TRPC6 MUTATED TRPC6 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             7              96
  T4             1              13
                 vv
clus              N0 N1 N2
  TRPC6 MUTATED    6  0  2
  TRPC6 WILD-TYPE 85 30 32
D108V6, multiclass
    clus
vv   TRPC6 MUTATED TRPC6 WILD-TYPE
  N0             6              85
  N1             0              30
  N2             2              32
                 vv
clus               M0  M1 M1A
  TRPC6 MUTATED     8   0   0
  TRPC6 WILD-TYPE 122  21   1
D108V7, multiclass
     clus
vv    TRPC6 MUTATED TRPC6 WILD-TYPE
  M0              8             122
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  TRPC6 MUTATED    0  6   2  0
  TRPC6 WILD-TYPE 30 51  42 21
D108V8, multiclass
     clus
vv    TRPC6 MUTATED TRPC6 WILD-TYPE
  I               0              30
  II              6              51
  III             2              42
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  TRPC6 MUTATED     7   0   0   0
  TRPC6 WILD-TYPE 122   1  19   1
D108V9, multiclass
    clus
vv   TRPC6 MUTATED TRPC6 WILD-TYPE
  R0             7             122
  R1             0               1
  R2             0              19
  RX             0               1
D108V10, continuous

Clustering(109) Variable = RHOA MUTATION ANALYSIS
D109V1, survival
                sevent
clus2             0  1
  RHOA MUTATED    1  1
  RHOA WILD-TYPE 67 10
  RHOA MUTATED RHOA WILD-TYPE 
             2             77 
  RHOA MUTATED RHOA WILD-TYPE 
             1             10 
$`RHOA MUTATED`
TCGA-AA-A01P TCGA-AA-A01R 
       38.07        35.01 

$`RHOA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  RHOA MUTATED RHOA WILD-TYPE 
         35.01           0.92 
  RHOA MUTATED RHOA WILD-TYPE 
         38.07          51.95 
  RHOA MUTATED RHOA WILD-TYPE 
         36.54          10.92 
[1] "35.0 - 38.1 (36.5)" "0.9 - 52.0 (10.9)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
[1] "Remove cluster labels:" "RHOA MUTATED"          
clus
  RHOA MUTATED RHOA WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AY-4071 
"RHOA WILD-TYPE" 
D109V2, continuous
D109V3, binary
                cls
clus              0  1
  RHOA MUTATED    2  2
  RHOA WILD-TYPE 75 76
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    2
  RHOA WILD-TYPE   75   76
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            2             75
  MALE              2             76
D109V4, binary
                cls
clus               0   1
  RHOA MUTATED     2   1
  RHOA WILD-TYPE 126  23
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    1
  RHOA WILD-TYPE  126   23
                               clus
vv                              RHOA MUTATED RHOA WILD-TYPE
  COLON ADENOCARCINOMA                     2            126
  COLON MUCINOUS ADENOCARCINOMA            1             23
                vv
clus             T1 T2 T3 T4
  RHOA MUTATED    0  0  4  0
  RHOA WILD-TYPE  4 33 99 14
D109V5, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            0              4
  T2            0             33
  T3            4             99
  T4            0             14
                vv
clus             N0 N1 N2
  RHOA MUTATED    1  2  1
  RHOA WILD-TYPE 90 28 33
D109V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            1             90
  N1            2             28
  N2            1             33
                vv
clus              M0  M1 M1A
  RHOA MUTATED     3   1   0
  RHOA WILD-TYPE 127  20   1
D109V7, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  M0             3            127
  M1             1             20
  M1A            0              1
                vv
clus              I II III IV
  RHOA MUTATED    0  1   2  1
  RHOA WILD-TYPE 30 56  42 20
D109V8, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  I              0             30
  II             1             56
  III            2             42
  IV             1             20
                vv
clus              R0  R1  R2  RX
  RHOA MUTATED     3   0   1   0
  RHOA WILD-TYPE 126   1  18   1
D109V9, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  R0            3            126
  R1            0              1
  R2            1             18
  RX            0              1
D109V10, continuous

Clustering(110) Variable = SYNE1 MUTATION ANALYSIS
D110V1, survival
                 sevent
clus2              0  1
  SYNE1 MUTATED   18  2
  SYNE1 WILD-TYPE 50  9
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             20              59 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
              2               9 
$`SYNE1 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3518 
       16.54        14.70        17.79        15.52         9.14         1.02 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3854 
        0.99         1.02         1.02         1.02         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 
        0.99         1.02        30.02         4.01        17.00        20.98 
TCGA-AA-A01Q TCGA-AA-A02W 
        1.02        40.96 

$`SYNE1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3526 
       13.91        17.19        14.37        10.92         8.09         0.99 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02         0.99        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SYNE1 MUTATED SYNE1 WILD-TYPE 
           0.99            0.92 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
          40.96           51.95 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
          2.515          13.020 
[1] "1.0 - 41.0 (2.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
[1] "hr=" "1.3"
D110V2, continuous
D110V3, binary
                 cls
clus               0  1
  SYNE1 MUTATED   20 17
  SYNE1 WILD-TYPE 57 61
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     20   17
  SYNE1 WILD-TYPE   57   61
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  FEMALE            20              57
  MALE              17              61
D110V4, binary
                 cls
clus                0   1
  SYNE1 MUTATED    26  10
  SYNE1 WILD-TYPE 102  14
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     26   10
  SYNE1 WILD-TYPE  102   14
                               clus
vv                              SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON ADENOCARCINOMA                     26             102
  COLON MUCINOUS ADENOCARCINOMA            10              14
                 vv
clus              T1 T2 T3 T4
  SYNE1 MUTATED    1  5 26  4
  SYNE1 WILD-TYPE  3 28 77 10
D110V5, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  T1             1               3
  T2             5              28
  T3            26              77
  T4             4              10
                 vv
clus              N0 N1 N2
  SYNE1 MUTATED   24  9  4
  SYNE1 WILD-TYPE 67 21 30
D110V6, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  N0            24              67
  N1             9              21
  N2             4              30
                 vv
clus              M0 M1 M1A
  SYNE1 MUTATED   32  3   0
  SYNE1 WILD-TYPE 98 18   1
D110V7, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  M0             32              98
  M1              3              18
  M1A             0               1
                 vv
clus               I II III IV
  SYNE1 MUTATED    4 17  11  3
  SYNE1 WILD-TYPE 26 40  33 18
D110V8, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  I               4              26
  II             17              40
  III            11              33
  IV              3              18
                 vv
clus              R0 R1 R2 RX
  SYNE1 MUTATED   31  0  3  0
  SYNE1 WILD-TYPE 98  1 16  1
D110V9, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  R0            31              98
  R1             0               1
  R2             3              16
  RX             0               1
D110V10, continuous

Clustering(111) Variable = CYTL1 MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2              0  1
  CYTL1 MUTATED    2  0
  CYTL1 WILD-TYPE 66 11
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2              77 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              0              11 
$`CYTL1 MUTATED`
TCGA-A6-2670 TCGA-AA-A010 
       13.91        20.98 

$`CYTL1 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       16.54        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  CYTL1 MUTATED CYTL1 WILD-TYPE 
          13.91            0.92 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
          20.98           51.95 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
         17.445          10.920 
[1] "13.9 - 21.0 (17.4)" "0.9 - 52.0 (10.9)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
[1] "Remove cluster labels:" "CYTL1 MUTATED"         
clus
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2              77 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AY-4071 
"CYTL1 WILD-TYPE" 
D111V2, continuous
D111V3, binary
                 cls
clus               0  1
  CYTL1 MUTATED    2  2
  CYTL1 WILD-TYPE 75 76
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      2    2
  CYTL1 WILD-TYPE   75   76
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  FEMALE             2              75
  MALE               2              76
D111V4, binary
                 cls
clus                0   1
  CYTL1 MUTATED     4   0
  CYTL1 WILD-TYPE 124  24
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      4    0
  CYTL1 WILD-TYPE  124   24
                               clus
vv                              CYTL1 MUTATED CYTL1 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             0              24
                 vv
clus               T1  T2  T3  T4
  CYTL1 MUTATED     1   0   2   1
  CYTL1 WILD-TYPE   3  33 101  13
D111V5, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             2             101
  T4             1              13
                 vv
clus              N0 N1 N2
  CYTL1 MUTATED    4  0  0
  CYTL1 WILD-TYPE 87 30 34
D111V6, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  N0             4              87
  N1             0              30
  N2             0              34
                 vv
clus               M0  M1 M1A
  CYTL1 MUTATED     4   0   0
  CYTL1 WILD-TYPE 126  21   1
D111V7, multiclass
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  M0              4             126
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  CYTL1 MUTATED    1  3   0  0
  CYTL1 WILD-TYPE 29 54  44 21
D111V8, multiclass
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  I               1              29
  II              3              54
  III             0              44
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  CYTL1 MUTATED     4   0   0   0
  CYTL1 WILD-TYPE 125   1  19   1
D111V9, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  R0             4             125
  R1             0               1
  R2             0              19
  RX             0               1
D111V10, continuous

Clustering(112) Variable = CHRM2 MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2              0  1
  CHRM2 MUTATED    3  1
  CHRM2 WILD-TYPE 65 10
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              4              75 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              1              10 
$`CHRM2 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         4.01        20.98 

$`CHRM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CHRM2 MUTATED CHRM2 WILD-TYPE 
           0.99            0.92 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
          20.98           51.95 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
          2.515          12.000 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
[1] "hr=" "2.7"
D112V2, continuous
D112V3, binary
                 cls
clus               0  1
  CHRM2 MUTATED    5  3
  CHRM2 WILD-TYPE 72 75
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      5    3
  CHRM2 WILD-TYPE   72   75
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  FEMALE             5              72
  MALE               3              75
D112V4, binary
                 cls
clus                0   1
  CHRM2 MUTATED     6   2
  CHRM2 WILD-TYPE 122  22
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      6    2
  CHRM2 WILD-TYPE  122   22
                               clus
vv                              CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             2              22
                 vv
clus              T1 T2 T3 T4
  CHRM2 MUTATED    0  0  4  4
  CHRM2 WILD-TYPE  4 33 99 10
D112V5, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             4              99
  T4             4              10
                 vv
clus              N0 N1 N2
  CHRM2 MUTATED    5  1  2
  CHRM2 WILD-TYPE 86 29 32
D112V6, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  N0             5              86
  N1             1              29
  N2             2              32
                 vv
clus               M0  M1 M1A
  CHRM2 MUTATED     5   3   0
  CHRM2 WILD-TYPE 125  18   1
D112V7, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  M0              5             125
  M1              3              18
  M1A             0               1
                 vv
clus               I II III IV
  CHRM2 MUTATED    0  5   0  3
  CHRM2 WILD-TYPE 30 52  44 18
D112V8, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  I               0              30
  II              5              52
  III             0              44
  IV              3              18
                 vv
clus               R0  R1  R2  RX
  CHRM2 MUTATED     5   0   3   0
  CHRM2 WILD-TYPE 124   1  16   1
D112V9, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  R0             5             124
  R1             0               1
  R2             3              16
  RX             0               1
D112V10, continuous

Clustering(113) Variable = GALNT14 MUTATION ANALYSIS
D113V1, survival
                   sevent
clus2                0  1
  GALNT14 MUTATED    3  1
  GALNT14 WILD-TYPE 65 10
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                4                75 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                1                10 
$`GALNT14 MUTATED`
TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 
        0.99        30.02         4.01        20.98 

$`GALNT14 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  GALNT14 MUTATED GALNT14 WILD-TYPE 
             0.99              0.92 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
            30.02             51.95 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
           12.495            12.000 
[1] "1.0 - 30.0 (12.5)" "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
[1] "hr=" "2"  
D113V2, continuous
D113V3, binary
                   cls
clus                 0  1
  GALNT14 MUTATED    5  4
  GALNT14 WILD-TYPE 72 74
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      5    4
  GALNT14 WILD-TYPE   72   74
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  FEMALE               5                72
  MALE                 4                74
D113V4, binary
                   cls
clus                  0   1
  GALNT14 MUTATED     7   2
  GALNT14 WILD-TYPE 121  22
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      7    2
  GALNT14 WILD-TYPE  121   22
                               clus
vv                              GALNT14 MUTATED GALNT14 WILD-TYPE
  COLON ADENOCARCINOMA                        7               121
  COLON MUCINOUS ADENOCARCINOMA               2                22
                   vv
clus                T1 T2 T3 T4
  GALNT14 MUTATED    0  0  5  4
  GALNT14 WILD-TYPE  4 33 98 10
D113V5, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  T1               0                 4
  T2               0                33
  T3               5                98
  T4               4                10
                   vv
clus                N0 N1 N2
  GALNT14 MUTATED    8  0  1
  GALNT14 WILD-TYPE 83 30 33
D113V6, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  N0               8                83
  N1               0                30
  N2               1                33
                   vv
clus                 M0  M1 M1A
  GALNT14 MUTATED     9   0   0
  GALNT14 WILD-TYPE 121  21   1
D113V7, multiclass
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  M0                9               121
  M1                0                21
  M1A               0                 1
                   vv
clus                 I II III IV
  GALNT14 MUTATED    0  8   1  0
  GALNT14 WILD-TYPE 30 49  43 21
D113V8, multiclass
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  I                 0                30
  II                8                49
  III               1                43
  IV                0                21
                   vv
clus                 R0  R1  R2  RX
  GALNT14 MUTATED     9   0   0   0
  GALNT14 WILD-TYPE 120   1  19   1
D113V9, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  R0               9               120
  R1               0                 1
  R2               0                19
  RX               0                 1
D113V10, continuous

Clustering(114) Variable = LRRIQ3 MUTATION ANALYSIS
D114V1, survival
                  sevent
clus2               0  1
  LRRIQ3 MUTATED    3  0
  LRRIQ3 WILD-TYPE 65 11
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               3               76 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               0               11 
$`LRRIQ3 MUTATED`
TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A010 
        0.99         1.02        20.98 

$`LRRIQ3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            0.99             0.92 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           20.98            51.95 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D114V2, continuous
D114V3, binary
                  cls
clus                0  1
  LRRIQ3 MUTATED    6  1
  LRRIQ3 WILD-TYPE 71 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      6    1
  LRRIQ3 WILD-TYPE   71   77
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              6               71
  MALE                1               77
D114V4, binary
                  cls
clus                 0   1
  LRRIQ3 MUTATED     6   1
  LRRIQ3 WILD-TYPE 122  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      6    1
  LRRIQ3 WILD-TYPE  122   23
                               clus
vv                              LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus               T1 T2 T3 T4
  LRRIQ3 MUTATED    0  1  4  2
  LRRIQ3 WILD-TYPE  4 32 99 12
D114V5, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              4               99
  T4              2               12
                  vv
clus               N0 N1 N2
  LRRIQ3 MUTATED    3  2  2
  LRRIQ3 WILD-TYPE 88 28 32
D114V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0              3               88
  N1              2               28
  N2              2               32
                  vv
clus                M0  M1 M1A
  LRRIQ3 MUTATED     6   1   0
  LRRIQ3 WILD-TYPE 124  20   1
D114V7, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0               6              124
  M1               1               20
  M1A              0                1
                  vv
clus                I II III IV
  LRRIQ3 MUTATED    1  2   3  1
  LRRIQ3 WILD-TYPE 29 55  41 20
D114V8, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  I                1               29
  II               2               55
  III              3               41
  IV               1               20
                  vv
clus                R0  R1  R2  RX
  LRRIQ3 MUTATED     5   0   1   0
  LRRIQ3 WILD-TYPE 124   1  18   1
D114V9, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  R0              5              124
  R1              0                1
  R2              1               18
  RX              0                1
D114V10, continuous

Clustering(115) Variable = NAALAD2 MUTATION ANALYSIS
D115V1, survival
                   sevent
clus2                0  1
  NAALAD2 MUTATED    5  1
  NAALAD2 WILD-TYPE 63 10
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                6                73 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                1                10 
$`NAALAD2 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-A00A TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
       14.70         0.99        18.02        18.02         4.01        20.98 

$`NAALAD2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
             0.99              0.92 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            20.98             51.95 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            16.36             10.92 
[1] "1.0 - 21.0 (16.4)" "0.9 - 52.0 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
[1] "hr=" "1.2"
D115V2, continuous
D115V3, binary
                   cls
clus                 0  1
  NAALAD2 MUTATED    8  3
  NAALAD2 WILD-TYPE 69 75
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      8    3
  NAALAD2 WILD-TYPE   69   75
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  FEMALE               8                69
  MALE                 3                75
D115V4, binary
                   cls
clus                  0   1
  NAALAD2 MUTATED     6   5
  NAALAD2 WILD-TYPE 122  19
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      6    5
  NAALAD2 WILD-TYPE  122   19
                               clus
vv                              NAALAD2 MUTATED NAALAD2 WILD-TYPE
  COLON ADENOCARCINOMA                        6               122
  COLON MUCINOUS ADENOCARCINOMA               5                19
                   vv
clus                T1 T2 T3 T4
  NAALAD2 MUTATED    1  1  4  4
  NAALAD2 WILD-TYPE  3 32 99 10
D115V5, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  T1               1                 3
  T2               1                32
  T3               4                99
  T4               4                10
                   vv
clus                N0 N1 N2
  NAALAD2 MUTATED    9  2  0
  NAALAD2 WILD-TYPE 82 28 34
D115V6, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  N0               9                82
  N1               2                28
  N2               0                34
                   vv
clus                 M0  M1 M1A
  NAALAD2 MUTATED    10   1   0
  NAALAD2 WILD-TYPE 120  20   1
D115V7, multiclass
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  M0               10               120
  M1                1                20
  M1A               0                 1
                   vv
clus                 I II III IV
  NAALAD2 MUTATED    2  7   1  1
  NAALAD2 WILD-TYPE 28 50  43 20
D115V8, multiclass
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  I                 2                28
  II                7                50
  III               1                43
  IV                1                20
                   vv
clus                 R0  R1  R2  RX
  NAALAD2 MUTATED    10   0   1   0
  NAALAD2 WILD-TYPE 119   1  18   1
D115V9, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  R0              10               119
  R1               0                 1
  R2               1                18
  RX               0                 1
D115V10, continuous

Clustering(116) Variable = PCDH11X MUTATION ANALYSIS
D116V1, survival
                   sevent
clus2                0  1
  PCDH11X MUTATED    6  3
  PCDH11X WILD-TYPE 62  8
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                9                70 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                3                 8 
$`PCDH11X MUTATED`
TCGA-A6-3810 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3952 TCGA-AA-3977 
        8.09         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F 
        4.01        20.98        18.02 

$`PCDH11X WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        40.93        16.31         0.95 

  PCDH11X MUTATED PCDH11X WILD-TYPE 
             0.99              0.92 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
            20.98             51.95 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
             1.02             13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
[1] "hr=" "5"  
D116V2, continuous
D116V3, binary
                   cls
clus                 0  1
  PCDH11X MUTATED    5  6
  PCDH11X WILD-TYPE 72 72
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      5    6
  PCDH11X WILD-TYPE   72   72
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  FEMALE               5                72
  MALE                 6                72
D116V4, binary
                   cls
clus                  0   1
  PCDH11X MUTATED     8   3
  PCDH11X WILD-TYPE 120  21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      8    3
  PCDH11X WILD-TYPE  120   21
                               clus
vv                              PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON ADENOCARCINOMA                        8               120
  COLON MUCINOUS ADENOCARCINOMA               3                21
                   vv
clus                T1 T2 T3 T4
  PCDH11X MUTATED    1  1  7  2
  PCDH11X WILD-TYPE  3 32 96 12
D116V5, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  T1               1                 3
  T2               1                32
  T3               7                96
  T4               2                12
                   vv
clus                N0 N1 N2
  PCDH11X MUTATED    9  0  2
  PCDH11X WILD-TYPE 82 30 32
D116V6, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  N0               9                82
  N1               0                30
  N2               2                32
                   vv
clus                 M0  M1 M1A
  PCDH11X MUTATED    10   0   0
  PCDH11X WILD-TYPE 120  21   1
D116V7, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  M0               10               120
  M1                0                21
  M1A               0                 1
                   vv
clus                 I II III IV
  PCDH11X MUTATED    1  7   2  0
  PCDH11X WILD-TYPE 29 50  42 21
D116V8, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  I                 1                29
  II                7                50
  III               2                42
  IV                0                21
                   vv
clus                 R0  R1  R2  RX
  PCDH11X MUTATED    10   0   0   0
  PCDH11X WILD-TYPE 119   1  19   1
D116V9, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  R0              10               119
  R1               0                 1
  R2               0                19
  RX               0                 1
D116V10, continuous

Clustering(117) Variable = TFAP2D MUTATION ANALYSIS
D117V1, survival
                  sevent
clus2               0  1
  TFAP2D MUTATED    2  0
  TFAP2D WILD-TYPE 66 11
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               2               77 
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               0               11 
$`TFAP2D MUTATED`
TCGA-AA-3848 TCGA-AA-3986 
        0.99         0.99 

$`TFAP2D WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         1.02        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  TFAP2D MUTATED TFAP2D WILD-TYPE 
            0.99             0.92 
  TFAP2D MUTATED TFAP2D WILD-TYPE 
            0.99            51.95 
  TFAP2D MUTATED TFAP2D WILD-TYPE 
            0.99            12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TFAP2D WILD-TYPE"   "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TFAP2D WILD-TYPE"   "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TFAP2D WILD-TYPE"   "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "TFAP2D MUTATED" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
[1] "Remove cluster labels:" "TFAP2D MUTATED"        
clus
  TFAP2D MUTATED TFAP2D WILD-TYPE 
               2               77 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3854       TCGA-AA-3877       TCGA-AA-3939 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3952 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977       TCGA-AA-A004 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" "TFAP2D WILD-TYPE" 
      TCGA-AY-4071 
"TFAP2D WILD-TYPE" 
D117V2, continuous
D117V3, binary
                  cls
clus                0  1
  TFAP2D MUTATED    4  1
  TFAP2D WILD-TYPE 73 77
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TFAP2D MUTATED      4    1
  TFAP2D WILD-TYPE   73   77
        clus
vv       TFAP2D MUTATED TFAP2D WILD-TYPE
  FEMALE              4               73
  MALE                1               77
D117V4, binary
                  cls
clus                 0   1
  TFAP2D MUTATED     4   1
  TFAP2D WILD-TYPE 124  23
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TFAP2D MUTATED      4    1
  TFAP2D WILD-TYPE  124   23
                               clus
vv                              TFAP2D MUTATED TFAP2D WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              1               23
                  vv
clus                T1  T2  T3  T4
  TFAP2D MUTATED     0   2   3   0
  TFAP2D WILD-TYPE   4  31 100  14
D117V5, multiclass
    clus
vv   TFAP2D MUTATED TFAP2D WILD-TYPE
  T1              0                4
  T2              2               31
  T3              3              100
  T4              0               14
                  vv
clus               N0 N1 N2
  TFAP2D MUTATED    3  1  1
  TFAP2D WILD-TYPE 88 29 33
D117V6, multiclass
    clus
vv   TFAP2D MUTATED TFAP2D WILD-TYPE
  N0              3               88
  N1              1               29
  N2              1               33
                  vv
clus                M0  M1 M1A
  TFAP2D MUTATED     5   0   0
  TFAP2D WILD-TYPE 125  21   1
D117V7, multiclass
     clus
vv    TFAP2D MUTATED TFAP2D WILD-TYPE
  M0               5              125
  M1               0               21
  M1A              0                1
                  vv
clus                I II III IV
  TFAP2D MUTATED    2  1   2  0
  TFAP2D WILD-TYPE 28 56  42 21
D117V8, multiclass
     clus
vv    TFAP2D MUTATED TFAP2D WILD-TYPE
  I                2               28
  II               1               56
  III              2               42
  IV               0               21
                  vv
clus                R0  R1  R2  RX
  TFAP2D MUTATED     5   0   0   0
  TFAP2D WILD-TYPE 124   1  19   1
D117V9, multiclass
    clus
vv   TFAP2D MUTATED TFAP2D WILD-TYPE
  R0              5              124
  R1              0                1
  R2              0               19
  RX              0                1
D117V10, continuous

Clustering(118) Variable = TNR MUTATION ANALYSIS
D118V1, survival
               sevent
clus2            0  1
  TNR MUTATED    7  1
  TNR WILD-TYPE 61 10
  TNR MUTATED TNR WILD-TYPE 
            8            71 
  TNR MUTATED TNR WILD-TYPE 
            1            10 
$`TNR MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N 
        1.02         0.99         0.99         0.99         1.02         4.01 
TCGA-AA-A01I TCGA-AA-A01Q 
       12.00         1.02 

$`TNR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
        0.99        13.02        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  TNR MUTATED TNR WILD-TYPE 
         0.99          0.92 
  TNR MUTATED TNR WILD-TYPE 
        12.00         51.95 
  TNR MUTATED TNR WILD-TYPE 
         1.02         13.91 
[1] "1.0 - 12.0 (1.0)"  "0.9 - 52.0 (13.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
[1] "hr=" "2.2"
D118V2, continuous
D118V3, binary
               cls
clus             0  1
  TNR MUTATED    6  9
  TNR WILD-TYPE 71 69
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED      6    9
  TNR WILD-TYPE   71   69
        clus
vv       TNR MUTATED TNR WILD-TYPE
  FEMALE           6            71
  MALE             9            69
D118V4, binary
               cls
clus              0   1
  TNR MUTATED    11   3
  TNR WILD-TYPE 117  21
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED     11    3
  TNR WILD-TYPE  117   21
                               clus
vv                              TNR MUTATED TNR WILD-TYPE
  COLON ADENOCARCINOMA                   11           117
  COLON MUCINOUS ADENOCARCINOMA           3            21
               vv
clus            T1 T2 T3 T4
  TNR MUTATED    0  5  7  3
  TNR WILD-TYPE  4 28 96 11
D118V5, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  T1           0             4
  T2           5            28
  T3           7            96
  T4           3            11
               vv
clus            N0 N1 N2
  TNR MUTATED   14  1  0
  TNR WILD-TYPE 77 29 34
D118V6, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  N0          14            77
  N1           1            29
  N2           0            34
               vv
clus             M0  M1 M1A
  TNR MUTATED    13   1   0
  TNR WILD-TYPE 117  20   1
D118V7, multiclass
     clus
vv    TNR MUTATED TNR WILD-TYPE
  M0           13           117
  M1            1            20
  M1A           0             1
               vv
clus             I II III IV
  TNR MUTATED    4  9   0  1
  TNR WILD-TYPE 26 48  44 20
D118V8, multiclass
     clus
vv    TNR MUTATED TNR WILD-TYPE
  I             4            26
  II            9            48
  III           0            44
  IV            1            20
               vv
clus             R0  R1  R2  RX
  TNR MUTATED    13   0   1   0
  TNR WILD-TYPE 116   1  18   1
D118V9, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  R0          13           116
  R1           0             1
  R2           1            18
  RX           0             1
D118V10, continuous

Clustering(119) Variable = CNTNAP4 MUTATION ANALYSIS
D119V1, survival
                   sevent
clus2                0  1
  CNTNAP4 MUTATED    3  2
  CNTNAP4 WILD-TYPE 65  9
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                5                74 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                2                 9 
$`CNTNAP4 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A024 
        1.02         4.01        27.02        20.98        39.06 

$`CNTNAP4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
             1.02              0.92 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            39.06             51.95 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            20.98             11.46 
[1] "1.0 - 39.1 (21.0)" "0.9 - 52.0 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
[1] "hr=" "2"  
D119V2, continuous
D119V3, binary
                   cls
clus                 0  1
  CNTNAP4 MUTATED    5  5
  CNTNAP4 WILD-TYPE 72 73
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      5    5
  CNTNAP4 WILD-TYPE   72   73
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  FEMALE               5                72
  MALE                 5                73
D119V4, binary
                   cls
clus                  0   1
  CNTNAP4 MUTATED     7   3
  CNTNAP4 WILD-TYPE 121  21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      7    3
  CNTNAP4 WILD-TYPE  121   21
                               clus
vv                              CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  COLON ADENOCARCINOMA                        7               121
  COLON MUCINOUS ADENOCARCINOMA               3                21
                   vv
clus                T1 T2 T3 T4
  CNTNAP4 MUTATED    0  1  6  3
  CNTNAP4 WILD-TYPE  4 32 97 11
D119V5, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               6                97
  T4               3                11
                   vv
clus                N0 N1 N2
  CNTNAP4 MUTATED    9  0  1
  CNTNAP4 WILD-TYPE 82 30 33
D119V6, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  N0               9                82
  N1               0                30
  N2               1                33
                   vv
clus                 M0  M1 M1A
  CNTNAP4 MUTATED     9   0   0
  CNTNAP4 WILD-TYPE 121  21   1
D119V7, multiclass
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  M0                9               121
  M1                0                21
  M1A               0                 1
                   vv
clus                 I II III IV
  CNTNAP4 MUTATED    0  8   1  0
  CNTNAP4 WILD-TYPE 30 49  43 21
D119V8, multiclass
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  I                 0                30
  II                8                49
  III               1                43
  IV                0                21
                   vv
clus                 R0  R1  R2  RX
  CNTNAP4 MUTATED     9   0   0   0
  CNTNAP4 WILD-TYPE 120   1  19   1
D119V9, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  R0               9               120
  R1               0                 1
  R2               0                19
  RX               0                 1
D119V10, continuous

Clustering(120) Variable = DOCK2 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2              0  1
  DOCK2 MUTATED    8  1
  DOCK2 WILD-TYPE 60 10
  DOCK2 MUTATED DOCK2 WILD-TYPE 
              9              70 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
              1              10 
$`DOCK2 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        19.00        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01V 
        4.01        20.98        35.01 

$`DOCK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        18.02        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  DOCK2 MUTATED DOCK2 WILD-TYPE 
           0.99            0.92 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
          35.01           51.95 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
[1] "hr=" "1.1"
D120V2, continuous
D120V3, binary
                 cls
clus               0  1
  DOCK2 MUTATED    8  8
  DOCK2 WILD-TYPE 69 70
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED      8    8
  DOCK2 WILD-TYPE   69   70
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  FEMALE             8              69
  MALE               8              70
D120V4, binary
                 cls
clus                0   1
  DOCK2 MUTATED    11   4
  DOCK2 WILD-TYPE 117  20
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     11    4
  DOCK2 WILD-TYPE  117   20
                               clus
vv                              DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             4              20
                 vv
clus              T1 T2 T3 T4
  DOCK2 MUTATED    0  3  9  4
  DOCK2 WILD-TYPE  4 30 94 10
D120V5, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             9              94
  T4             4              10
                 vv
clus              N0 N1 N2
  DOCK2 MUTATED   13  1  2
  DOCK2 WILD-TYPE 78 29 32
D120V6, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  N0            13              78
  N1             1              29
  N2             2              32
                 vv
clus               M0  M1 M1A
  DOCK2 MUTATED    15   0   0
  DOCK2 WILD-TYPE 115  21   1
D120V7, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  M0             15             115
  M1              0              21
  M1A             0               1
                 vv
clus               I II III IV
  DOCK2 MUTATED    2 10   3  0
  DOCK2 WILD-TYPE 28 47  41 21
D120V8, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  I               2              28
  II             10              47
  III             3              41
  IV              0              21
                 vv
clus               R0  R1  R2  RX
  DOCK2 MUTATED    14   0   0   0
  DOCK2 WILD-TYPE 115   1  19   1
D120V9, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  R0            14             115
  R1             0               1
  R2             0              19
  RX             0               1
D120V10, continuous
                       V1.D                          V2 
            "Time to Death"                       "AGE" 
                         V3                          V4 
                   "GENDER"         "HISTOLOGICAL.TYPE" 
                         V5                          V6 
              "PATHOLOGY.T"               "PATHOLOGY.N" 
                         V7                          V8 
      "PATHOLOGICSPREAD(M)"               "TUMOR.STAGE" 
                         V9                         V10 
"COMPLETENESS.OF.RESECTION"     "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
