mutsig2cluster_new1 sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COAD-TP/2862139/COAD-TP.sample_sig_gene_table.txt |
Correlate_Cluster_mutation_onlysig2 clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/COAD-TP/2909319/1.GDAC_mergedClustering.Finished/COAD-TP.transferedmergedcluster.txt |
Correlate_Cluster_mutation_onlysig2 filter cluster smaller than | 3 |
Correlate_Cluster_mutation_onlysig2 output name | COAD-TP |
Correlate_Cluster_mutation_onlysig2 figure height | 5 |
Correlate_Cluster_mutation_onlysig2 figure width | 9 |
Correlate_Cluster_mutation_onlysig2 survival legend position | OUT |
Correlate_Cluster_mutation_onlysig2 pvalue cutoff | 0.05 |
Correlate_Cluster_mutation_onlysig2 qvalue cutoff | 0.25 |
Correlate_Cluster_mutation_onlysig2 make figure | ONLYSIG |
Correlate_Cluster_mutation_onlysig2 nozzle ver | Nozzle.R1 |
Execution Times: | |
Submitted: | 10:51:49 09-04-13 |
Completed: | |
Elapsed: | 01 hrs 36 mins 22 secs |
step 1. mutsig2cluster_new [id: 376789] Convert mutsig results to cluster files
urn:lsid:broadinstitute.org:cancer.genome.analysis:00336:4
sample gene table file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COAD-TP/2862139/COAD-TP.sample_sig_gene_table.txt |
maf file | |
sig gene file | |
sig gene q cutoff | 0.01 |
output name |
Output Files: | |
COAD-TP.mutsig.cluster.txt | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 10:51:49 09-04-13 |
Completed: | 12:25:36 09-04-13 |
Elapsed: | 01 hrs 33 mins 46 secs |
step 2. Correlate_Cluster_mutation_onlysig [id: 376790]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00503:3
cluster label file | COAD-TP.mutsig.cluster.txt |
clinical info file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/COAD-TP/2909319/1.GDAC_mergedClustering.Finished/COAD-TP.transferedmergedcluster.txt |
features used | ALL |
filter cluster smaller than | 3 |
output name | COAD-TP |
figure height | 5 |
figure width | 9 |
survival legend position | OUT |
pvalue cutoff | 0.05 |
qvalue cutoff | 0.25 |
make figure | ONLYSIG |
nozzle ver | Nozzle.R1 |
options | MUTSIG |
report title | |
job description |
Execution Times: | |
Submitted: | 10:51:50 09-04-13 |
Completed: | 12:28:10 09-04-13 |
Elapsed: | 01 hrs 36 mins 20 secs |