Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_mergedClustering1.mrnahc	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNA_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.mrnahc	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNA_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.mRNAseqhc	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNAseq_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.mRNAseqhc	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNAseq_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.methlyationcnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.Methylation_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.methlyationcnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.Methylation_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.mRNAseqcnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNAseq_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.mRNAseqcnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNAseq_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.PredictionU133aPhilips	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.RPPA_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.PredictionU133aPhilips	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.RPPA_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.mrnacnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNA_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.mrnacnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.mRNA_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.PredictionU133aTCGA	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.RPPA_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.PredictionU133aTCGA	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.RPPA_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.copynumber	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.CopyNumber_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.copynumber	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.CopyNumber_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.miRseqcnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.miRseq_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.miRseqcnmf	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.miRseq_Clustering_CNMF.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.miRseqhc	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.miRseq_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	COADREAD-TP.mergedcluster.txt	Merged_clusteing	Level_4	txt	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
GDAC_mergedClustering1.miRseqhc	COADREAD-TP.bestclus.txt	gdac.broadinstitute.org_COADREAD-TP.miRseq_Clustering_Consensus.Level_4.2013032600.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00255:23	Aggregate_Molecular_Subtype_Clusters_2013032600	report.html	report	Level_4	html	gdac.broadinstitute.org_COADREAD-TP.Aggregate_Molecular_Subtype_Clusters.Level_4.2013032600.0.0	yes
