| GDAC_mergedClustering1 mrnacnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2904203/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 mrnahc | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/COADREAD-TP/2904202/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 copynumber | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2861379/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 methlyationcnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2907070/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 mergedfile | COADREAD-TP |
| GDAC_mergedClustering1 PredictionU133aTCGA | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2900515/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 PredictionU133aPhilips | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/2859804/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 mRNAseqcnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2900512/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 mRNAseqhc | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/2859807/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 miRseqcnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2860151/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| GDAC_mergedClustering1 miRseqhc | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/2860148/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| Execution Times: | |
| Submitted: | 09:03:56 09-04-13 |
| Completed: | |
| Elapsed: | 00 hrs 55 mins 44 secs |
step 1. GDAC_mergedClustering [id: 375074] merge all clustering result
urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
| mrnacnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2904203/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| mrnahc | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/COADREAD-TP/2904202/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| mirnacnmf | |
| mirnahc | |
| copynumber | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2861379/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| methlyationhc | |
| methlyationcnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2907070/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| mergedfile | COADREAD-TP |
| PredictionU133aTCGA | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2900515/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| PredictionU133aPhilips | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/2859804/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| PredictionUNCTCGA | |
| mRNAseqcnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2900512/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| mRNAseqhc | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/2859807/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| miRseqcnmf | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/COADREAD-TP/2860151/3.GDAC_CNMFselectcluster.Finished/COADREAD-TP.bestclus.txt |
| miRseqhc | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/COADREAD-TP/2860148/3.GDAC_selectBestcluster.Finished/COADREAD-TP.bestclus.txt |
| Output Files: | |
| COADREAD-TP.mergedcluster.txt | |
| COADREAD-TP.transferedmergedcluster.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 09:04:00 09-04-13 |
| Completed: | 09:04:28 09-04-13 |
| Elapsed: | 00 hrs 00 mins 28 secs |
step 2. GDAC_mergedReport [id: 375075]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
| mergedcluster | COADREAD-TP.mergedcluster.txt |
| Output Files: | |
| report.html | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 09:04:00 09-04-13 |
| Completed: | 09:59:39 09-04-13 |
| Elapsed: | 00 hrs 55 mins 39 secs |