
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376810/COADREAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COADREAD-TP/2843108/1.GDAC_clinicalDataPicker.Finished/COADREAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=224, common to both=224
[1] 209 224
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             38             186 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
  NRAS MUTATED NRAS WILD-TYPE 
            20            204 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              33              191 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          160            64 
  APC MUTATED APC WILD-TYPE 
          160            64 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
  BRAF MUTATED BRAF WILD-TYPE 
            22            202 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
  KRAS MUTATED KRAS WILD-TYPE 
            96            128 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             26             198 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
  TP53 MUTATED TP53 WILD-TYPE 
           120            104 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
  FAM123B MUTATED FAM123B WILD-TYPE 
               25               199 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
           85           139 
  TTN MUTATED TTN WILD-TYPE 
           85           139 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             15             209 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              18              206 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            39            185 
  FAT4 MUTATED FAT4 WILD-TYPE 
            39            185 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 4                220 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              14              210 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               19               205 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             22             202 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
  LRP1B MUTATED LRP1B WILD-TYPE 
             39             185 
[1] "TNFRSF10C MUTATION ANALYSIS"
[1] 3
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 218 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
              11              213 
[1] "KIAA1804 MUTATION ANALYSIS"
[1] 3
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                15                209 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             20             204 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             16             208 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
  SOX9 MUTATED SOX9 WILD-TYPE 
            10            214 
[1] "PRDM9 MUTATION ANALYSIS"
[1] 3
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             16             208 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              6             218 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           33           191 
  DMD MUTATED DMD WILD-TYPE 
           33           191 
[1] "CSMD1 MUTATION ANALYSIS"
[1] 3
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             26             198 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
  LIFR MUTATED LIFR WILD-TYPE 
            18            206 
[1] "OR6N1 MUTATION ANALYSIS"
[1] 3
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
             10             214 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                7               217 
[1] "CNTN6 MUTATION ANALYSIS"
[1] 3
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             17             207 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              215 
[1] "SLITRK1 MUTATION ANALYSIS"
[1] 3
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               15               209 
[1] "CDH2 MUTATION ANALYSIS"
[1] 3
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
  CDH2 MUTATED CDH2 WILD-TYPE 
            16            208 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              7             217 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              11              213 
[1] "DKK2 MUTATION ANALYSIS"
[1] 3
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
  DKK2 MUTATED DKK2 WILD-TYPE 
             6            218 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             18             206 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           32           192 
  FLG MUTATED FLG WILD-TYPE 
           32           192 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
  ARID1A MUTATED ARID1A WILD-TYPE 
              21              203 
[1] "KIAA1486 MUTATION ANALYSIS"
[1] 3
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                13                211 
[1] "ROBO1 MUTATION ANALYSIS"
[1] 3
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             18             206 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             18             206 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             24             200 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             16             208 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              8             216 
[1] "UBE2NL MUTATION ANALYSIS"
[1] 3
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               7              217 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               9              215 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              11              213 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
              11              213 
[1] "ATP10A MUTATION ANALYSIS"
[1] 3
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
  ATP10A MUTATED ATP10A WILD-TYPE 
              19              205 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             34             190 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               9              215 
[1] "NALCN MUTATION ANALYSIS"
[1] 3
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
  NALCN MUTATED NALCN WILD-TYPE 
             20             204 
[1] "OTOL1 MUTATION ANALYSIS"
[1] 3
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              8             216 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
  PTEN MUTATED PTEN WILD-TYPE 
             7            217 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
  SDK1 MUTATED SDK1 WILD-TYPE 
            27            197 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
  TLL1 MUTATED TLL1 WILD-TYPE 
            15            209 
[1] "TMEM132D MUTATION ANALYSIS"
[1] 3
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                19                205 
[1] "TRPC4 MUTATION ANALYSIS"
[1] 3
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             17             207 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           25           199 
  ATM MUTATED ATM WILD-TYPE 
           25           199 
[1] "GPC6 MUTATION ANALYSIS"
[1] 3
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
  GPC6 MUTATED GPC6 WILD-TYPE 
            10            214 
[1] "CDH8 MUTATION ANALYSIS"
[1] 3
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
  CDH8 MUTATED CDH8 WILD-TYPE 
            14            210 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                217 
[1] "DKK4 MUTATION ANALYSIS"
[1] 3
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
  DKK4 MUTATED DKK4 WILD-TYPE 
             7            217 
[1] "PTPRM MUTATION ANALYSIS"
[1] 3
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
  PTPRM MUTATED PTPRM WILD-TYPE 
             20             204 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
  AFF2 MUTATED AFF2 WILD-TYPE 
            17            207 
[1] "NCAM2 MUTATION ANALYSIS"
[1] 3
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
             12             212 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             216 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
  RYR2 MUTATED RYR2 WILD-TYPE 
            29            195 
[1] "CDH9 MUTATION ANALYSIS"
[1] 3
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
  CDH9 MUTATED CDH9 WILD-TYPE 
            15            209 
[1] "GRIK3 MUTATION ANALYSIS"
[1] 3
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             17             207 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            218 
  ELF3 MUTATED ELF3 WILD-TYPE 
             6            218 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             17             207 
[1] "FAM133A MUTATION ANALYSIS"
[1] 3
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
  FAM133A MUTATED FAM133A WILD-TYPE 
                7               217 
[1] "IL1RAPL2 MUTATION ANALYSIS"
[1] 3
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                10                214 
[1] "CCBP2 MUTATION ANALYSIS"
[1] 3
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
             10             214 
[1] "OPCML MUTATION ANALYSIS"
[1] 3
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
  OPCML MUTATED OPCML WILD-TYPE 
             10             214 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
  CDH18 MUTATED CDH18 WILD-TYPE 
             13             211 
[1] "OR2L13 MUTATION ANALYSIS"
[1] 3
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              10              214 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
             10             214 
[1] "BAI3 MUTATION ANALYSIS"
[1] 3
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
  BAI3 MUTATED BAI3 WILD-TYPE 
            18            206 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                11                213 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              11              213 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             13             211 
[1] "UNC13C MUTATION ANALYSIS"
[1] 3
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
  UNC13C MUTATED UNC13C WILD-TYPE 
              17              207 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
  SCN7A MUTATED SCN7A WILD-TYPE 
             15             209 
[1] "ACOT4 MUTATION ANALYSIS"
[1] 3
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             221 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              3             221 
[1] "GGT1 MUTATION ANALYSIS"
[1] 3
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            221 
  GGT1 MUTATED GGT1 WILD-TYPE 
             3            221 
[1] "GRIA1 MUTATION ANALYSIS"
[1] 3
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             15             209 
[1] "ING1 MUTATION ANALYSIS"
[1] 3
  ING1 MUTATED ING1 WILD-TYPE 
             6            218 
  ING1 MUTATED ING1 WILD-TYPE 
             6            218 
[1] "PCDHA10 MUTATION ANALYSIS"
[1] 3
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
               10               214 
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
               10               214 
[1] "ZNF208 MUTATION ANALYSIS"
[1] 3
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
              11              213 
[1] "CRTC1 MUTATION ANALYSIS"
[1] 3
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              6             218 
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              6             218 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
  FAM5C MUTATED FAM5C WILD-TYPE 
             13             211 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               12               212 
[1] "FAM22F MUTATION ANALYSIS"
[1] 3
  FAM22F MUTATED FAM22F WILD-TYPE 
               9              215 
  FAM22F MUTATED FAM22F WILD-TYPE 
               9              215 
[1] "CHRDL1 MUTATION ANALYSIS"
[1] 3
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
              11              213 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             10             214 
  EDNRB MUTATED EDNRB WILD-TYPE 
             10             214 
[1] "IFT80 MUTATION ANALYSIS"
[1] 3
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
  IFT80 MUTATED IFT80 WILD-TYPE 
             10             214 
[1] "ANK2 MUTATION ANALYSIS"
[1] 3
  ANK2 MUTATED ANK2 WILD-TYPE 
            30            194 
  ANK2 MUTATED ANK2 WILD-TYPE 
            30            194 
[1] "CASP14 MUTATION ANALYSIS"
[1] 3
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
  CASP14 MUTATED CASP14 WILD-TYPE 
               8              216 
[1] "LASS3 MUTATION ANALYSIS"
[1] 3
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
  LASS3 MUTATED LASS3 WILD-TYPE 
              9             215 
[1] "P2RY10 MUTATION ANALYSIS"
[1] 3
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               7              217 
[1] "CNTN1 MUTATION ANALYSIS"
[1] 3
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
             14             210 
[1] "ISL1 MUTATION ANALYSIS"
[1] 3
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            216 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             15             209 
  ARID2 MUTATED ARID2 WILD-TYPE 
             15             209 
[1] "EIF4A2 MUTATION ANALYSIS"
[1] 3
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               5              219 
[1] "OR51V1 MUTATION ANALYSIS"
[1] 3
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              215 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              21              203 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
  CDH11 MUTATED CDH11 WILD-TYPE 
             14             210 
[1] "CHST9 MUTATION ANALYSIS"
[1] 3
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
  CHST9 MUTATED CHST9 WILD-TYPE 
              8             216 
[1] "HTR3B MUTATION ANALYSIS"
[1] 3
  HTR3B MUTATED HTR3B WILD-TYPE 
              6             218 
  HTR3B MUTATED HTR3B WILD-TYPE 
              6             218 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
              10              214 
[1] "HCN1 MUTATION ANALYSIS"
[1] 3
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
  HCN1 MUTATED HCN1 WILD-TYPE 
            10            214 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
             10             214 
[1] "CSMD3 MUTATION ANALYSIS"
[1] 3
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             28             196 
[1] "DCAF4L2 MUTATION ANALYSIS"
[1] 3
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
               11               213 
[1] "DACH2 MUTATION ANALYSIS"
[1] 3
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
  DACH2 MUTATED DACH2 WILD-TYPE 
             12             212 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             21             203 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               14               210 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             12             212 
[1] "DPP10 MUTATION ANALYSIS"
[1] 3
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
  DPP10 MUTATED DPP10 WILD-TYPE 
             13             211 
[1] "EVC2 MUTATION ANALYSIS"
[1] 3
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
  EVC2 MUTATED EVC2 WILD-TYPE 
            17            207 
[1] "C15ORF2 MUTATION ANALYSIS"
[1] 3
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               12               212 
[1] "NLRP5 MUTATION ANALYSIS"
[1] 3
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             212 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             12             212 
[1] "BTNL8 MUTATION ANALYSIS"
[1] 3
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             221 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              3             221 
[1] "KLK2 MUTATION ANALYSIS"
[1] 3
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            221 
  KLK2 MUTATED KLK2 WILD-TYPE 
             3            221 
[1] "LUZP2 MUTATION ANALYSIS"
[1] 3
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              6             218 
[1] "NXF5 MUTATION ANALYSIS"
[1] 3
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
  NXF5 MUTATED NXF5 WILD-TYPE 
             7            217 
[1] "PCDHB5 MUTATION ANALYSIS"
[1] 3
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              14              210 
[1] "LOXL2 MUTATION ANALYSIS"
[1] 3
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              9             215 
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              9             215 
[1] "UBQLNL MUTATION ANALYSIS"
[1] 3
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               5              219 
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               5              219 
[1] "MYO1B MUTATION ANALYSIS"
[1] 3
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
  MYO1B MUTATED MYO1B WILD-TYPE 
             13             211 
[1] "SPATA17 MUTATION ANALYSIS"
[1] 3
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                9               215 
[1] "RIMS1 MUTATION ANALYSIS"
[1] 3
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             15             209 
[1] "COL12A1 MUTATION ANALYSIS"
[1] 3
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               21               203 
[1] "JAKMIP2 MUTATION ANALYSIS"
[1] 3
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               13               211 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
  CDH10 MUTATED CDH10 WILD-TYPE 
             14             210 
[1] "EPHA5 MUTATION ANALYSIS"
[1] 3
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             13             211 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
             13             211 
[1] "ODZ1 MUTATION ANALYSIS"
[1] 3
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            22            202 
[1] "POSTN MUTATION ANALYSIS"
[1] 3
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
  POSTN MUTATED POSTN WILD-TYPE 
             11             213 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             47             177 
[1] "ZCWPW2 MUTATION ANALYSIS"
[1] 3
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               7              217 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            209 
[1] "TUSC3 MUTATION ANALYSIS"
[1] 3
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              7             217 
[1] "CACNG7 MUTATION ANALYSIS"
[1] 3
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               6              218 
[1] "RWDD2B MUTATION ANALYSIS"
[1] 3
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               8              216 
[1] "SLC25A13 MUTATION ANALYSIS"
[1] 3
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 7                217 
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 7                217 
[1] "DPF2 MUTATION ANALYSIS"
[1] 3
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            220 
  DPF2 MUTATED DPF2 WILD-TYPE 
             4            220 
[1] "PCDH10 MUTATION ANALYSIS"
[1] 3
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              17              207 
[1] "CDH12 MUTATION ANALYSIS"
[1] 3
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
  CDH12 MUTATED CDH12 WILD-TYPE 
             13             211 
[1] "MCF2 MUTATION ANALYSIS"
[1] 3
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
  MCF2 MUTATED MCF2 WILD-TYPE 
            12            212 
[1] "NCKAP5 MUTATION ANALYSIS"
[1] 3
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              15              209 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             13             211 
[1] "ATP7A MUTATION ANALYSIS"
[1] 3
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
  ATP7A MUTATED ATP7A WILD-TYPE 
              6             218 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
  TPTE MUTATED TPTE WILD-TYPE 
            12            212 
[1] "OR8B4 MUTATION ANALYSIS"
[1] 3
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              6             218 
[1] "SFMBT2 MUTATION ANALYSIS"
[1] 3
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              13              211 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              13              211 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             13             211 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
  BCHE MUTATED BCHE WILD-TYPE 
             9            215 
[1] "C8B MUTATION ANALYSIS"
[1] 3
  C8B MUTATED C8B WILD-TYPE 
           10           214 
  C8B MUTATED C8B WILD-TYPE 
           10           214 
[1] "FREM2 MUTATION ANALYSIS"
[1] 3
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
  FREM2 MUTATED FREM2 WILD-TYPE 
             23             201 
[1] "ZNF167 MUTATION ANALYSIS"
[1] 3
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               7              217 
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               7              217 
[1] "GABRG1 MUTATION ANALYSIS"
[1] 3
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               8              216 
[1] "SAT1 MUTATION ANALYSIS"
[1] 3
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            220 
[1] "CHD4 MUTATION ANALYSIS"
[1] 3
  CHD4 MUTATED CHD4 WILD-TYPE 
            17            207 
  CHD4 MUTATED CHD4 WILD-TYPE 
            17            207 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              14              210 
[1] "TMTC1 MUTATION ANALYSIS"
[1] 3
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             13             211 
[1] "SH3GL3 MUTATION ANALYSIS"
[1] 3
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               8              216 
[1] "ZFPM2 MUTATION ANALYSIS"
[1] 3
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              6             218 
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              6             218 
[1] "CACNG3 MUTATION ANALYSIS"
[1] 3
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               8              216 
[1] "POTEB MUTATION ANALYSIS"
[1] 3
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
  POTEB MUTATED POTEB WILD-TYPE 
              8             216 
[1] "GRIN2A MUTATION ANALYSIS"
[1] 3
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              19              205 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             17             207 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             218 
[1] "SPATA8 MUTATION ANALYSIS"
[1] 3
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               3              221 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             218 
[1] "SORCS1 MUTATION ANALYSIS"
[1] 3
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              15              209 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
              10              214 
[1] "DPY19L1 MUTATION ANALYSIS"
[1] 3
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                5               219 
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                5               219 
[1] "C16ORF45 MUTATION ANALYSIS"
[1] 3
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 3                221 
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 3                221 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
  INHBA MUTATED INHBA WILD-TYPE 
              9             215 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
  MIER3 MUTATED MIER3 WILD-TYPE 
             11             213 
[1] "ZNF585A MUTATION ANALYSIS"
[1] 3
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
               10               214 
[1] "TMPRSS13 MUTATION ANALYSIS"
[1] 3
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 4                220 
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 4                220 
[1] "FSTL5 MUTATION ANALYSIS"
[1] 3
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
             11             213 
[1] "DOK5 MUTATION ANALYSIS"
[1] 3
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
  DOK5 MUTATED DOK5 WILD-TYPE 
             6            218 
[1] "ZNF99 MUTATION ANALYSIS"
[1] 3
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
             11             213 
[1] "GML MUTATION ANALYSIS"
[1] 3
  GML MUTATED GML WILD-TYPE 
            6           218 
  GML MUTATED GML WILD-TYPE 
            6           218 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
            5           219 
  B2M MUTATED B2M WILD-TYPE 
            5           219 
[1] "PPP2R2B MUTATION ANALYSIS"
[1] 3
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                3               221 
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                3               221 
[1] "LRTM1 MUTATION ANALYSIS"
[1] 3
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              7             217 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               6              218 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             14             210 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            216 
[1] "SYT16 MUTATION ANALYSIS"
[1] 3
  SYT16 MUTATED SYT16 WILD-TYPE 
              9             215 
  SYT16 MUTATED SYT16 WILD-TYPE 
              9             215 
[1] "LPHN3 MUTATION ANALYSIS"
[1] 3
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             13             211 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             13             211 
[1] "LRP2 MUTATION ANALYSIS"
[1] 3
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
  LRP2 MUTATED LRP2 WILD-TYPE 
            35            189 
[1] "SOHLH2 MUTATION ANALYSIS"
[1] 3
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               9              215 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             9            215 
[1] "DSEL MUTATION ANALYSIS"
[1] 3
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
  DSEL MUTATED DSEL WILD-TYPE 
            14            210 
[1] "RNASE11 MUTATION ANALYSIS"
[1] 3
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               219 
[1] "MDGA2 MUTATION ANALYSIS"
[1] 3
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
             10             214 
[1] "RBMS3 MUTATION ANALYSIS"
[1] 3
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              6             218 
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              6             218 
[1] "COL6A6 MUTATION ANALYSIS"
[1] 3
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              16              208 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              16              208 
[1] "TMBIM4 MUTATION ANALYSIS"
[1] 3
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               4              220 
[1] "FAM135B MUTATION ANALYSIS"
[1] 3
  FAM135B MUTATED FAM135B WILD-TYPE 
               15               209 
  FAM135B MUTATED FAM135B WILD-TYPE 
               15               209 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               7              217 
[1] "SLC16A7 MUTATION ANALYSIS"
[1] 3
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                9               215 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "COMPLETENESS.OF.RESECTION"             
[17] "NUMBER.OF.LYMPH.NODES"                 
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 224 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
         423          503          523          447          541          437 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3514 TCGA-AA-3516 
         472          332          278          246           NA           NA 
TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 
          30           NA           NA           NA           NA           31 
TCGA-AA-3664 TCGA-AA-3666 TCGA-AA-3667 TCGA-AA-3672 TCGA-AA-3673 TCGA-AA-3678 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3679 TCGA-AA-3680 TCGA-AA-3681 TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 
          30           NA           NA           NA           30           NA 
TCGA-AA-3692 TCGA-AA-3693 TCGA-AA-3695 TCGA-AA-3696 TCGA-AA-3710 TCGA-AA-3715 
          NA           NA           NA           NA           31           30 
TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3818 TCGA-AA-3819 TCGA-AA-3821 
          30           NA           NA           NA           NA           NA 
TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3845 
          NA           NA           31           31           28           NA 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3850 TCGA-AA-3851 TCGA-AA-3852 TCGA-AA-3854 
          30           30           NA           NA           NA           31 
TCGA-AA-3855 TCGA-AA-3856 TCGA-AA-3858 TCGA-AA-3860 TCGA-AA-3864 TCGA-AA-3866 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3867 TCGA-AA-3869 TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3930 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
          NA           30           31           30           30           31 
TCGA-AA-3955 TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3971 TCGA-AA-3972 TCGA-AA-3973 
          NA           NA           31           NA           NA           NA 
TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 TCGA-AA-3979 TCGA-AA-3980 TCGA-AA-3982 
          30           NA           31           NA           NA           NA 
TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 TCGA-AA-3994 TCGA-AA-A004 TCGA-AA-A00A 
          NA           30           NA           NA          424          548 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
         578          913         1035          548          548          517 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
          NA          822          822           30          517          456 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
         669          638          457           30          396          365 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
         365          396           NA           31         1065           31 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A022 TCGA-AA-A024 
        1005         1065          791          638           NA           NA 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
        1580         1215           NA           NA           28         1246 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
        1215           NA         1245          496           29          482 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3574 TCGA-AG-3575 
         323          412          387          316           NA           NA 
TCGA-AG-3578 TCGA-AG-3580 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 
          NA           NA           31           31           61           NA 
TCGA-AG-3586 TCGA-AG-3587 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 TCGA-AG-3599 
          NA           31           NA           NA           NA           30 
TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 TCGA-AG-3609 
          NA           NA           NA           NA           NA           NA 
TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3881 
          NA           NA           31           29           30           NA 
TCGA-AG-3882 TCGA-AG-3883 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 TCGA-AG-3893 
          NA           NA           28           NA           31           30 
TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 TCGA-AG-3909 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-4015 
          31           31           NA           31           31           NA 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
         637          423          183          789          700          518 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
         484          396           31          365         2130         1946 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
         334         1519           NA           NA         1884         1246 
TCGA-AG-A032 TCGA-AG-A036 
        1156         2192 
Variable 1:'AGE':	nDistinctValues=49,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=9,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                       "PRIMARY.SITE.OF.DISEASE"  
 [3] "GENDER"                    "HISTOLOGICAL.TYPE"        
 [5] "PATHOLOGY.T"               "PATHOLOGY.N"              
 [7] "PATHOLOGICSPREAD(M)"       "TUMOR.STAGE"              
 [9] "COMPLETENESS.OF.RESECTION" "NUMBER.OF.LYMPH.NODES"    
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
48 82 60 29 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 224 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=49, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  9  47 150  17 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  9  47 150  17 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
  9  47 150  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  9  47 150  17 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2 
134  44  46 
[1] "table(vv)"
vv
 N0  N1  N2 
134  44  46 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2 
134  44  46 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 N0  N1  N2 
134  44  46 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 48  82  60  29 
[1] "table(vv)"
vv
  I  II III  IV 
 48  82  60  29 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 48  82  60  29 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 48  82  60  29 
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=21, binary=FALSE, numeric=TRUE

Clustering(1) Variable = FBXW7 MUTATION ANALYSIS
D1V1, survival
                 sevent
clus2              0  1
  FBXW7 MUTATED   17  2
  FBXW7 WILD-TYPE 89 12
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             19             101 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              2              12 
$`FBXW7 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 
       16.54        14.70        17.79        10.92         1.02         1.02 
TCGA-AA-3848 TCGA-AA-3949 TCGA-AA-A00J TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
        0.99         0.99        18.02        13.02         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A03F TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A011 
       20.98        39.06        18.02         1.02        20.94        17.03 
TCGA-AG-A02N 
       61.94 

$`FBXW7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 
       13.91        17.19        14.37        15.52         9.14         8.09 
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 
        1.02         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       12.00        38.07         1.02        33.04        35.01        26.01 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        23.01        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.99            0.92 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          61.94           72.07 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          16.54            9.14 
[1] "1.0 - 61.9 (16.5)" "0.9 - 72.1 (9.1)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr=" "1.3"
D1V2, continuous
D1V3, binary
                 cls
clus                0   1
  FBXW7 MUTATED    29   9
  FBXW7 WILD-TYPE 125  59
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     29    9
  FBXW7 WILD-TYPE  125   59
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON             29             125
  RECTUM             9              59
D1V4, binary
                 cls
clus                0   1
  FBXW7 MUTATED    21  17
  FBXW7 WILD-TYPE  86 100
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     21   17
  FBXW7 WILD-TYPE   86  100
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE            21              86
  MALE              17             100
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FBXW7 MUTATED                     18                            10
  FBXW7 WILD-TYPE                  110                            14
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FBXW7 MUTATED                       7                              1
  FBXW7 WILD-TYPE                    50                              7
D1V5, multiclass
                                clus
vv                               FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON ADENOCARCINOMA                      18             110
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  FBXW7 MUTATED     1   3  31   2
  FBXW7 WILD-TYPE   8  44 119  15
D1V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            31             119
  T4             2              15
                 vv
clus               N0  N1  N2
  FBXW7 MUTATED    23   6   9
  FBXW7 WILD-TYPE 111  38  37
D1V7, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0            23             111
  N1             6              38
  N2             9              37
                 vv
clus               M0  M1 M1A
  FBXW7 MUTATED    38   0   0
  FBXW7 WILD-TYPE 151  31   1
D1V8, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  M0             38             151
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  FBXW7 MUTATED    4 19  15  0
  FBXW7 WILD-TYPE 44 63  45 29
D1V9, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  I               4              44
  II             19              63
  III            15              45
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  FBXW7 MUTATED    35   0   0   0
  FBXW7 WILD-TYPE 153   2  27   1
D1V10, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  R0            35             153
  R1             0               2
  R2             0              27
  RX             0               1
D1V11, continuous

Clustering(2) Variable = NRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  NRAS MUTATED    8  4
  NRAS WILD-TYPE 98 10
  NRAS MUTATED NRAS WILD-TYPE 
            12            108 
  NRAS MUTATED NRAS WILD-TYPE 
             4             10 
$`NRAS MUTATED`
TCGA-A6-2678 TCGA-AA-3666 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 
       14.37         1.02        34.03         4.01        35.01        39.06 
TCGA-AA-A02F TCGA-AF-2691 TCGA-AF-3913 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A01L 
       39.95        10.62        10.39         1.02         0.99        12.00 

$`NRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       26.01        20.98        51.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       15.85        13.55        12.72         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
       13.02         1.02        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  NRAS MUTATED NRAS WILD-TYPE 
          0.99           0.92 
  NRAS MUTATED NRAS WILD-TYPE 
         39.95          72.07 
  NRAS MUTATED NRAS WILD-TYPE 
         11.31          10.95 
[1] "1.0 - 40.0 (11.3)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "2.8"
D2V2, continuous
D2V3, binary
                cls
clus               0   1
  NRAS MUTATED    15   5
  NRAS WILD-TYPE 139  63
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     15    5
  NRAS WILD-TYPE  139   63
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  COLON            15            139
  RECTUM            5             63
D2V4, binary
                cls
clus               0   1
  NRAS MUTATED     5  15
  NRAS WILD-TYPE 102 102
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      5   15
  NRAS WILD-TYPE  102  102
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE            5            102
  MALE             15            102
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NRAS MUTATED                     13                             2
  NRAS WILD-TYPE                  115                            22
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NRAS MUTATED                       5                              0
  NRAS WILD-TYPE                    52                              8
D2V5, multiclass
                                clus
vv                               NRAS MUTATED NRAS WILD-TYPE
  COLON ADENOCARCINOMA                     13            115
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  NRAS MUTATED     2   5  11   2
  NRAS WILD-TYPE   7  42 139  15
D2V6, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  T1            2              7
  T2            5             42
  T3           11            139
  T4            2             15
                vv
clus              N0  N1  N2
  NRAS MUTATED    11   8   1
  NRAS WILD-TYPE 123  36  45
D2V7, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  N0           11            123
  N1            8             36
  N2            1             45
                vv
clus              M0  M1 M1A
  NRAS MUTATED    15   4   0
  NRAS WILD-TYPE 174  27   1
D2V8, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  M0            15            174
  M1             4             27
  M1A            0              1
                vv
clus              I II III IV
  NRAS MUTATED    5  5   5  3
  NRAS WILD-TYPE 43 77  55 26
D2V9, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  I              5             43
  II             5             77
  III            5             55
  IV             3             26
                vv
clus              R0  R1  R2  RX
  NRAS MUTATED    16   0   4   0
  NRAS WILD-TYPE 172   2  23   1
D2V10, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  R0           16            172
  R1            0              2
  R2            4             23
  RX            0              1
D2V11, continuous

Clustering(3) Variable = PIK3CA MUTATION ANALYSIS
D3V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   20  3
  PIK3CA WILD-TYPE 86 11
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              23               97 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               3               11 
$`PIK3CA MUTATED`
TCGA-A6-3808 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3848 TCGA-AA-3877 
        9.14         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         0.99         1.02         4.01        20.98        12.00 
TCGA-AA-A01K TCGA-AA-A01V TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       13.02        35.01         0.92        39.95        18.02        40.93 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-A00H TCGA-AG-A020 TCGA-AG-A02N 
        0.99         0.92        25.94        10.98        61.94 

$`PIK3CA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3941 TCGA-AA-3949 
        1.02         0.92         0.99         1.02         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01Q 
       15.02         0.99        13.02        12.00        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AY-4070 
       51.95        39.95         2.01         5.03        40.96        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.95         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y 
        1.02         1.02        20.94        13.91         6.02        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       63.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.92             0.92 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           61.94            72.07 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
            4.01            12.00 
[1] "0.9 - 61.9 (4.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    26   7
  PIK3CA WILD-TYPE 128  61
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     26    7
  PIK3CA WILD-TYPE  128   61
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON              26              128
  RECTUM              7               61
D3V4, binary
                  cls
clus                0  1
  PIK3CA MUTATED   15 18
  PIK3CA WILD-TYPE 92 99
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     15   18
  PIK3CA WILD-TYPE   92   99
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             15               92
  MALE               18               99
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PIK3CA MUTATED                     19                             7
  PIK3CA WILD-TYPE                  109                            17
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PIK3CA MUTATED                       4                              3
  PIK3CA WILD-TYPE                    53                              5
D3V5, multiclass
                                clus
vv                               PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON ADENOCARCINOMA                       19              109
  COLON MUCINOUS ADENOCARCINOMA               7               17
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              3                5
                  vv
clus                T1  T2  T3  T4
  PIK3CA MUTATED     1   8  21   3
  PIK3CA WILD-TYPE   8  39 129  14
D3V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                8
  T2              8               39
  T3             21              129
  T4              3               14
                  vv
clus                N0  N1  N2
  PIK3CA MUTATED    27   3   3
  PIK3CA WILD-TYPE 107  41  43
D3V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             27              107
  N1              3               41
  N2              3               43
                  vv
clus                M0  M1 M1A
  PIK3CA MUTATED    31   1   0
  PIK3CA WILD-TYPE 158  30   1
D3V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  M0              31              158
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  PIK3CA MUTATED    8 18   5  1
  PIK3CA WILD-TYPE 40 64  55 28
D3V9, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  I                8               40
  II              18               64
  III              5               55
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  PIK3CA MUTATED    31   0   1   0
  PIK3CA WILD-TYPE 157   2  26   1
D3V10, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  R0             31              157
  R1              0                2
  R2              1               26
  RX              0                1
D3V11, continuous

Clustering(4) Variable = APC MUTATION ANALYSIS
D4V1, survival
               sevent
clus2            0  1
  APC MUTATED   76 12
  APC WILD-TYPE 30  2
  APC MUTATED APC WILD-TYPE 
           88            32 
  APC MUTATED APC WILD-TYPE 
           12             2 
$`APC MUTATED`
TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3555 
       17.19        17.79        10.92         9.14         8.09         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99         1.02        18.02 
TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F 
       17.00        14.99        21.99        20.98        15.02        13.02 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AY-4071 TCGA-AF-2691 
        5.03         0.92        40.96        18.02         0.95        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A002 
        0.99         0.99         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01L 
       13.91         6.02        17.03        15.91        13.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

$`APC WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-AA-3518 
       13.91        16.54        14.70        14.37        15.52         1.02 
TCGA-AA-3526 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3877 TCGA-AA-3949 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00Q 
        1.02         0.99        13.94        30.02        34.03        27.02 
TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01X TCGA-AA-A02Y 
        0.99         0.99        12.00        38.07        26.01        39.95 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AG-3582 TCGA-AG-4008 TCGA-AG-A00H 
       40.93        16.31        15.85         1.02         1.02        25.94 
TCGA-AG-A00Y TCGA-AG-A016 
       23.01         1.02 

  APC MUTATED APC WILD-TYPE 
         0.92          0.92 
  APC MUTATED APC WILD-TYPE 
        72.07         40.93 
  APC MUTATED APC WILD-TYPE 
       10.505        13.925 
[1] "0.9 - 72.1 (10.5)" "0.9 - 40.9 (13.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
[1] "hr=" "2"  
D4V2, continuous
D4V3, binary
               cls
clus              0   1
  APC MUTATED   102  56
  APC WILD-TYPE  52  12
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED    102   56
  APC WILD-TYPE   52   12
        clus
vv       APC MUTATED APC WILD-TYPE
  COLON          102            52
  RECTUM          56            12
D4V4, binary
               cls
clus             0  1
  APC MUTATED   70 90
  APC WILD-TYPE 37 27
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     70   90
  APC WILD-TYPE   37   27
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE          70            37
  MALE            90            27
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  APC MUTATED                     86                            15
  APC WILD-TYPE                   42                             9
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  APC MUTATED                      47                              6
  APC WILD-TYPE                    10                              2
D4V5, multiclass
                                clus
vv                               APC MUTATED APC WILD-TYPE
  COLON ADENOCARCINOMA                    86            42
  COLON MUCINOUS ADENOCARCINOMA           15             9
  RECTAL ADENOCARCINOMA                   47            10
  RECTAL MUCINOUS ADENOCARCINOMA           6             2
               vv
clus             T1  T2  T3  T4
  APC MUTATED     7  35 105  13
  APC WILD-TYPE   2  12  45   4
D4V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           7             2
  T2          35            12
  T3         105            45
  T4          13             4
               vv
clus            N0 N1 N2
  APC MUTATED   97 31 32
  APC WILD-TYPE 37 13 14
D4V7, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  N0          97            37
  N1          31            13
  N2          32            14
               vv
clus             M0  M1 M1A
  APC MUTATED   132  24   1
  APC WILD-TYPE  57   7   0
D4V8, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  M0          132            57
  M1           24             7
  M1A           1             0
               vv
clus             I II III IV
  APC MUTATED   37 57  39 23
  APC WILD-TYPE 11 25  21  6
D4V9, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  I            37            11
  II           57            25
  III          39            21
  IV           23             6
               vv
clus             R0  R1  R2  RX
  APC MUTATED   133   1  22   0
  APC WILD-TYPE  55   1   5   1
D4V10, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  R0         133            55
  R1           1             1
  R2          22             5
  RX           0             1
D4V11, continuous

Clustering(5) Variable = BRAF MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  BRAF MUTATED   11  1
  BRAF WILD-TYPE 95 13
  BRAF MUTATED BRAF WILD-TYPE 
            12            108 
  BRAF MUTATED BRAF WILD-TYPE 
             1             13 
$`BRAF MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 
       16.54        14.70         0.99         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A01D TCGA-AA-A01P TCGA-AG-A002 
        1.02        19.00        18.02         0.99        38.07        20.94 

$`BRAF WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       13.94        18.02        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        20.98        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  BRAF MUTATED BRAF WILD-TYPE 
          0.99           0.92 
  BRAF MUTATED BRAF WILD-TYPE 
         38.07          72.07 
  BRAF MUTATED BRAF WILD-TYPE 
          7.86          10.95 
[1] "1.0 - 38.1 (7.9)"  "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, binary
                cls
clus               0   1
  BRAF MUTATED    20   2
  BRAF WILD-TYPE 134  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     20    2
  BRAF WILD-TYPE  134   66
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  COLON            20            134
  RECTUM            2             66
D5V4, binary
                cls
clus               0   1
  BRAF MUTATED    15   7
  BRAF WILD-TYPE  92 110
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     15    7
  BRAF WILD-TYPE   92  110
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           15             92
  MALE              7            110
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  BRAF MUTATED                      9                            11
  BRAF WILD-TYPE                  119                            13
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  BRAF MUTATED                       1                              1
  BRAF WILD-TYPE                    56                              7
D5V5, multiclass
                                clus
vv                               BRAF MUTATED BRAF WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA            11             13
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  BRAF MUTATED     1   4  12   4
  BRAF WILD-TYPE   8  43 138  13
D5V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            1              8
  T2            4             43
  T3           12            138
  T4            4             13
                vv
clus              N0  N1  N2
  BRAF MUTATED    13   5   4
  BRAF WILD-TYPE 121  39  42
D5V7, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  N0           13            121
  N1            5             39
  N2            4             42
                vv
clus              M0  M1 M1A
  BRAF MUTATED    21   1   0
  BRAF WILD-TYPE 168  30   1
D5V8, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  M0            21            168
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  BRAF MUTATED    5  8   8  1
  BRAF WILD-TYPE 43 74  52 28
D5V9, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  I              5             43
  II             8             74
  III            8             52
  IV             1             28
                vv
clus              R0  R1  R2  RX
  BRAF MUTATED    19   0   1   0
  BRAF WILD-TYPE 169   2  26   1
D5V10, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  R0           19            169
  R1            0              2
  R2            1             26
  RX            0              1
D5V11, continuous

Clustering(6) Variable = KRAS MUTATION ANALYSIS
D6V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   55  3
  KRAS WILD-TYPE 51 11
  KRAS MUTATED KRAS WILD-TYPE 
            58             62 
  KRAS MUTATED KRAS WILD-TYPE 
             3             11 
$`KRAS MUTATED`
TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 
       15.52         9.14         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 
        1.02         0.92         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00K TCGA-AA-A00N 
        0.99         1.02         0.99        18.02        18.02         4.01 
TCGA-AA-A00Q TCGA-AA-A00W TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       27.02        14.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01R TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02W 
       35.01        26.01        20.98        51.95         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       39.95        18.02        40.93        15.85        10.62        13.55 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.92         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01W TCGA-AG-A020 
       25.94        23.01        15.91        13.02        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94        61.94        40.96        38.01 

$`KRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-A004 TCGA-AA-A00D 
        0.99         0.99         1.02         1.02        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00R 
       30.02        34.03        18.02        17.00        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01P 
       17.00        21.99        20.98        15.02         0.99        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A02F 
        1.02         1.02        33.04        35.01        39.06        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-3400 TCGA-AF-3913 
        2.01         5.03        16.31         0.95        12.72        10.39 
TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 
        1.02         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A026 
       20.94        17.03         1.02        12.00        63.98         1.94 
TCGA-AG-A02G TCGA-AG-A036 
       38.93        72.07 

  KRAS MUTATED KRAS WILD-TYPE 
          0.92           0.95 
  KRAS MUTATED KRAS WILD-TYPE 
         70.03          72.07 
  KRAS MUTATED KRAS WILD-TYPE 
        11.490         10.655 
[1] "0.9 - 70.0 (11.5)" "0.9 - 72.1 (10.7)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
[1] "hr=" "4"  
D6V2, continuous
D6V3, binary
                cls
clus              0  1
  KRAS MUTATED   58 37
  KRAS WILD-TYPE 96 31
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     58   37
  KRAS WILD-TYPE   96   31
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  COLON            58             96
  RECTUM           37             31
D6V4, binary
                cls
clus              0  1
  KRAS MUTATED   44 52
  KRAS WILD-TYPE 63 65
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     44   52
  KRAS WILD-TYPE   63   65
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           44             63
  MALE             52             65
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  KRAS MUTATED                     46                            10
  KRAS WILD-TYPE                   82                            14
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  KRAS MUTATED                      29                              6
  KRAS WILD-TYPE                    28                              2
D6V5, multiclass
                                clus
vv                               KRAS MUTATED KRAS WILD-TYPE
  COLON ADENOCARCINOMA                     46             82
  COLON MUCINOUS ADENOCARCINOMA            10             14
  RECTAL ADENOCARCINOMA                    29             28
  RECTAL MUCINOUS ADENOCARCINOMA            6              2
                vv
clus             T1 T2 T3 T4
  KRAS MUTATED    6 21 64  5
  KRAS WILD-TYPE  3 26 86 12
D6V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            6              3
  T2           21             26
  T3           64             86
  T4            5             12
                vv
clus             N0 N1 N2
  KRAS MUTATED   63 16 17
  KRAS WILD-TYPE 71 28 29
D6V7, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0           63             71
  N1           16             28
  N2           17             29
                vv
clus              M0  M1 M1A
  KRAS MUTATED    83  10   1
  KRAS WILD-TYPE 106  21   0
D6V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  M0            83            106
  M1            10             21
  M1A            1              0
                vv
clus              I II III IV
  KRAS MUTATED   23 37  23 10
  KRAS WILD-TYPE 25 45  37 19
D6V9, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I             23             25
  II            37             45
  III           23             37
  IV            10             19
                vv
clus              R0  R1  R2  RX
  KRAS MUTATED    87   0   7   1
  KRAS WILD-TYPE 101   2  20   0
D6V10, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  R0           87            101
  R1            0              2
  R2            7             20
  RX            1              0
D6V11, continuous

Clustering(7) Variable = SMAD4 MUTATION ANALYSIS
D7V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED   13  1
  SMAD4 WILD-TYPE 93 13
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             14             106 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              13 
$`SMAD4 MUTATED`
TCGA-A6-2676 TCGA-A6-2678 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-A00K 
       14.70        14.37         0.99         1.02         0.99        18.02 
TCGA-AA-A01D TCGA-AA-A02O TCGA-AG-3887 TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A016 
        0.99         0.92         0.92        13.91        17.03         1.02 
TCGA-AG-A020 TCGA-AG-A02X 
       10.98        40.96 

$`SMAD4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3679 
        9.14         8.09         1.02         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         5.03        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        1.02        20.94         6.02        25.94        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 
       13.02        12.00        70.03        63.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        38.01        72.07 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.92            0.92 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          40.96           72.07 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
           6.00           11.46 
[1] "0.9 - 41.0 (6.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
                 cls
clus                0   1
  SMAD4 MUTATED    18   8
  SMAD4 WILD-TYPE 136  60
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     18    8
  SMAD4 WILD-TYPE  136   60
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON             18             136
  RECTUM             8              60
D7V4, binary
                 cls
clus                0   1
  SMAD4 MUTATED    13  13
  SMAD4 WILD-TYPE  94 104
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     13   13
  SMAD4 WILD-TYPE   94  104
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE            13              94
  MALE              13             104
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SMAD4 MUTATED                     12                             5
  SMAD4 WILD-TYPE                  116                            19
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SMAD4 MUTATED                       4                              4
  SMAD4 WILD-TYPE                    53                              4
D7V5, multiclass
                                clus
vv                               SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             4               4
                 vv
clus               T1  T2  T3  T4
  SMAD4 MUTATED     0   5  19   1
  SMAD4 WILD-TYPE   9  42 131  16
D7V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            19             131
  T4             1              16
                 vv
clus               N0  N1  N2
  SMAD4 MUTATED    16   5   5
  SMAD4 WILD-TYPE 118  39  41
D7V7, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0            16             118
  N1             5              39
  N2             5              41
                 vv
clus               M0  M1 M1A
  SMAD4 MUTATED    21   4   0
  SMAD4 WILD-TYPE 168  27   1
D7V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             21             168
  M1              4              27
  M1A             0               1
                 vv
clus               I II III IV
  SMAD4 MUTATED    4 11   6  4
  SMAD4 WILD-TYPE 44 71  54 25
D7V9, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  I               4              44
  II             11              71
  III             6              54
  IV              4              25
                 vv
clus               R0  R1  R2  RX
  SMAD4 MUTATED    22   0   4   0
  SMAD4 WILD-TYPE 166   2  23   1
D7V10, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  R0            22             166
  R1             0               2
  R2             4              23
  RX             0               1
D7V11, continuous

Clustering(8) Variable = TP53 MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   61  7
  TP53 WILD-TYPE 45  7
  TP53 MUTATED TP53 WILD-TYPE 
            68             52 
  TP53 MUTATED TP53 WILD-TYPE 
             7              7 
$`TP53 MUTATED`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        8.09         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99         1.02        13.94        19.00        30.02        34.03 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        27.02        14.99        20.98         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A02F 
       12.00        13.02         1.02        33.04        20.98        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        2.01         5.03        40.96        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3587 
       15.85        10.62        12.72        10.39         1.02         1.02 
TCGA-AG-3726 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01L 
        6.02        23.01        17.03        15.91         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       70.03        63.98        10.98         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

$`TP53 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3710 
       16.54        17.79         9.14         1.02         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00A 
        0.99         0.99         1.02         1.02         0.99        18.02 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02         4.01        27.02         0.99        17.00 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       21.99        15.02        12.00        38.07         1.02        35.01 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02Y 
       35.01        26.01        39.06        51.95         0.92        39.95 
TCGA-AA-A03F TCGA-AF-2692 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3727 
       18.02        13.55         1.02         2.01         0.99         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A008 
        0.99         0.92         1.02         0.99        20.94        13.91 
TCGA-AG-A00H TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02G 
       25.94        13.02        49.94        38.93 

  TP53 MUTATED TP53 WILD-TYPE 
          0.92           0.92 
  TP53 MUTATED TP53 WILD-TYPE 
         72.07          51.95 
  TP53 MUTATED TP53 WILD-TYPE 
        11.490          6.575 
[1] "0.9 - 72.1 (11.5)" "0.9 - 52.0 (6.6)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
                cls
clus              0  1
  TP53 MUTATED   74 45
  TP53 WILD-TYPE 80 23
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     74   45
  TP53 WILD-TYPE   80   23
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  COLON            74             80
  RECTUM           45             23
D8V4, binary
                cls
clus              0  1
  TP53 MUTATED   53 67
  TP53 WILD-TYPE 54 50
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     53   67
  TP53 WILD-TYPE   54   50
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           53             54
  MALE             67             50
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TP53 MUTATED                     68                             5
  TP53 WILD-TYPE                   60                            19
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TP53 MUTATED                      41                              4
  TP53 WILD-TYPE                    16                              4
D8V5, multiclass
                                clus
vv                               TP53 MUTATED TP53 WILD-TYPE
  COLON ADENOCARCINOMA                     68             60
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                    41             16
  RECTAL MUCINOUS ADENOCARCINOMA            4              4
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED    4 25 82  8
  TP53 WILD-TYPE  5 22 68  9
D8V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            4              5
  T2           25             22
  T3           82             68
  T4            8              9
                vv
clus             N0 N1 N2
  TP53 MUTATED   66 26 28
  TP53 WILD-TYPE 68 18 18
D8V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           66             68
  N1           26             18
  N2           28             18
                vv
clus             M0 M1 M1A
  TP53 MUTATED   99 17   1
  TP53 WILD-TYPE 90 14   0
D8V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  M0            99             90
  M1            17             14
  M1A            1              0
                vv
clus              I II III IV
  TP53 MUTATED   24 38  38 15
  TP53 WILD-TYPE 24 44  22 14
D8V9, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I             24             24
  II            38             44
  III           38             22
  IV            15             14
                vv
clus              R0  R1  R2  RX
  TP53 MUTATED   101   2  14   0
  TP53 WILD-TYPE  87   0  13   1
D8V10, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  R0          101             87
  R1            2              0
  R2           14             13
  RX            0              1
D8V11, continuous

Clustering(9) Variable = FAM123B MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  FAM123B MUTATED    9  2
  FAM123B WILD-TYPE 97 12
  FAM123B MUTATED FAM123B WILD-TYPE 
               11               109 
  FAM123B MUTATED FAM123B WILD-TYPE 
                2                12 
$`FAM123B MUTATED`
TCGA-A6-3808 TCGA-AA-3666 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A010 
        9.14         1.02         0.99         1.02        18.02        20.98 
TCGA-AA-A01D TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02G TCGA-AG-A02N 
        0.99         1.02        20.94        38.93        61.94 

$`FAM123B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       63.98        10.98        49.94         1.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  FAM123B MUTATED FAM123B WILD-TYPE 
             0.99              0.92 
  FAM123B MUTATED FAM123B WILD-TYPE 
            61.94             72.07 
  FAM123B MUTATED FAM123B WILD-TYPE 
             9.14             10.98 
[1] "1.0 - 61.9 (9.1)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
[1] "hr=" "1.4"
D9V2, continuous
D9V3, binary
                   cls
clus                  0   1
  FAM123B MUTATED    19   6
  FAM123B WILD-TYPE 135  62
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     19    6
  FAM123B WILD-TYPE  135   62
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  COLON               19               135
  RECTUM               6                62
D9V4, binary
                   cls
clus                  0   1
  FAM123B MUTATED    12  13
  FAM123B WILD-TYPE  95 104
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     12   13
  FAM123B WILD-TYPE   95  104
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  FEMALE              12                95
  MALE                13               104
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FAM123B MUTATED                     14                             4
  FAM123B WILD-TYPE                  114                            20
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FAM123B MUTATED                       6                              0
  FAM123B WILD-TYPE                    51                              8
D9V5, multiclass
                                clus
vv                               FAM123B MUTATED FAM123B WILD-TYPE
  COLON ADENOCARCINOMA                        14               114
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        6                51
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  FAM123B MUTATED     1   6  15   3
  FAM123B WILD-TYPE   8  41 135  14
D9V6, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  T1               1                 8
  T2               6                41
  T3              15               135
  T4               3                14
                   vv
clus                 N0  N1  N2
  FAM123B MUTATED    17   2   6
  FAM123B WILD-TYPE 117  42  40
D9V7, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  N0              17               117
  N1               2                42
  N2               6                40
                   vv
clus                 M0  M1 M1A
  FAM123B MUTATED    20   4   0
  FAM123B WILD-TYPE 169  27   1
D9V8, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  M0               20               169
  M1                4                27
  M1A               0                 1
                   vv
clus                 I II III IV
  FAM123B MUTATED    5 11   4  4
  FAM123B WILD-TYPE 43 71  56 25
D9V9, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  I                 5                43
  II               11                71
  III               4                56
  IV                4                25
                   vv
clus                 R0  R1  R2  RX
  FAM123B MUTATED    19   0   4   0
  FAM123B WILD-TYPE 169   2  23   1
D9V10, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  R0              19               169
  R1               0                 2
  R2               4                23
  RX               0                 1
D9V11, continuous

Clustering(10) Variable = TTN MUTATION ANALYSIS
D10V1, survival
               sevent
clus2            0  1
  TTN MUTATED   47  7
  TTN WILD-TYPE 59  7
  TTN MUTATED TTN WILD-TYPE 
           54            66 
  TTN MUTATED TTN WILD-TYPE 
            7             7 
$`TTN MUTATED`
TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3710 
       14.70        17.79         9.14         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3844 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         0.99         0.92         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O 
        0.99        30.02        18.02        18.02         4.01        27.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01P 
        0.99        20.98         0.99        13.02        12.00        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H 
       35.01         1.02        35.01        20.98        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 TCGA-AG-3887 
        5.03         0.92        40.96        39.95         0.95         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00Y 
        1.02         0.99         1.02         1.02        20.94        23.01 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02X TCGA-AG-A032 
       63.98        10.98        49.94         1.94        40.96        38.01 

$`TTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3952 
        1.02         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00Q 
       13.94        18.02        19.00        34.03        17.00        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01G TCGA-AA-A01K 
       17.00        14.99        21.99        15.02        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A03F 
        1.02        33.04        26.01        39.06        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4007 
        1.02         0.95         0.99         0.99         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        25.94        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A036 
        1.02        12.00        70.03        38.93        61.94        72.07 

  TTN MUTATED TTN WILD-TYPE 
         0.92          0.95 
  TTN MUTATED TTN WILD-TYPE 
        63.98         72.07 
  TTN MUTATED TTN WILD-TYPE 
        1.975        13.020 
[1] "0.9 - 64.0 (2.0)"  "0.9 - 72.1 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, binary
               cls
clus             0  1
  TTN MUTATED   68 16
  TTN WILD-TYPE 86 52
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     68   16
  TTN WILD-TYPE   86   52
        clus
vv       TTN MUTATED TTN WILD-TYPE
  COLON           68            86
  RECTUM          16            52
D10V4, binary
               cls
clus             0  1
  TTN MUTATED   44 41
  TTN WILD-TYPE 63 76
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     44   41
  TTN WILD-TYPE   63   76
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          44            63
  MALE            41            76
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TTN MUTATED                     51                            16
  TTN WILD-TYPE                   77                             8
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TTN MUTATED                      14                              2
  TTN WILD-TYPE                    43                              6
D10V5, multiclass
                                clus
vv                               TTN MUTATED TTN WILD-TYPE
  COLON ADENOCARCINOMA                    51            77
  COLON MUCINOUS ADENOCARCINOMA           16             8
  RECTAL ADENOCARCINOMA                   14            43
  RECTAL MUCINOUS ADENOCARCINOMA           2             6
               vv
clus             T1  T2  T3  T4
  TTN MUTATED     4  21  49  10
  TTN WILD-TYPE   5  26 101   7
D10V6, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  T1           4             5
  T2          21            26
  T3          49           101
  T4          10             7
               vv
clus            N0 N1 N2
  TTN MUTATED   58 16 11
  TTN WILD-TYPE 76 28 35
D10V7, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  N0          58            76
  N1          16            28
  N2          11            35
               vv
clus             M0  M1 M1A
  TTN MUTATED    74   7   1
  TTN WILD-TYPE 115  24   0
D10V8, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  M0           74           115
  M1            7            24
  M1A           1             0
               vv
clus             I II III IV
  TTN MUTATED   23 32  20  8
  TTN WILD-TYPE 25 50  40 21
D10V9, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  I            23            25
  II           32            50
  III          20            40
  IV            8            21
               vv
clus             R0  R1  R2  RX
  TTN MUTATED    72   1   9   0
  TTN WILD-TYPE 116   1  18   1
D10V10, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  R0          72           116
  R1           1             1
  R2           9            18
  RX           0             1
D10V11, continuous

Clustering(11) Variable = SMAD2 MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  SMAD2 MUTATED    7  2
  SMAD2 WILD-TYPE 99 12
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              9             111 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              2              12 
$`SMAD2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02         4.01        35.01        39.06        51.95 
TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A01W 
       20.94        17.03        70.03 

$`SMAD2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       33.04        26.01        20.98        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        15.91        13.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  SMAD2 MUTATED SMAD2 WILD-TYPE 
           1.02            0.92 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          70.03           72.07 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          20.94           10.62 
[1] "1.0 - 70.0 (20.9)" "0.9 - 72.1 (10.6)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
[1] "hr=" "1.1"
D11V2, continuous
D11V3, binary
                 cls
clus                0   1
  SMAD2 MUTATED    10   5
  SMAD2 WILD-TYPE 144  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED     10    5
  SMAD2 WILD-TYPE  144   63
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON             10             144
  RECTUM             5              63
D11V4, binary
                 cls
clus                0   1
  SMAD2 MUTATED     5  10
  SMAD2 WILD-TYPE 102 107
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      5   10
  SMAD2 WILD-TYPE  102  107
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  FEMALE             5             102
  MALE              10             107
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SMAD2 MUTATED                      7                             3
  SMAD2 WILD-TYPE                  121                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SMAD2 MUTATED                       5                              0
  SMAD2 WILD-TYPE                    52                              8
D11V5, multiclass
                                clus
vv                               SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  SMAD2 MUTATED     0   5   8   2
  SMAD2 WILD-TYPE   9  42 142  15
D11V6, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  T1             0               9
  T2             5              42
  T3             8             142
  T4             2              15
                 vv
clus               N0  N1  N2
  SMAD2 MUTATED    12   2   1
  SMAD2 WILD-TYPE 122  42  45
D11V7, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  N0            12             122
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  SMAD2 MUTATED    12   2   0
  SMAD2 WILD-TYPE 177  29   1
D11V8, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  SMAD2 MUTATED    3  8   1  2
  SMAD2 WILD-TYPE 45 74  59 27
D11V9, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  I               3              45
  II              8              74
  III             1              59
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  SMAD2 MUTATED    12   0   2   0
  SMAD2 WILD-TYPE 176   2  25   1
D11V10, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             2              25
  RX             0               1
D11V11, continuous

Clustering(12) Variable = TCF7L2 MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  TCF7L2 MUTATED   10  0
  TCF7L2 WILD-TYPE 96 14
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              10              110 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               0               14 
$`TCF7L2 MUTATED`
TCGA-AA-3977 TCGA-AA-A00K TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01T TCGA-AF-2692 
        1.02        18.02        20.98        12.00        33.04        13.55 
TCGA-AG-3582 TCGA-AG-3726 TCGA-AG-4007 TCGA-AG-A032 
        1.02         1.02         1.02        38.01 

$`TCF7L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-3400 TCGA-AF-3913 
       16.31         0.95        15.85        10.62        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         1.02         0.99         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
            1.02             0.92 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
           38.01            72.07 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
          12.775           10.770 
[1] "1.0 - 38.0 (12.8)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D12V2, continuous
D12V3, binary
                  cls
clus                 0   1
  TCF7L2 MUTATED    11   6
  TCF7L2 WILD-TYPE 143  62
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     11    6
  TCF7L2 WILD-TYPE  143   62
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON              11              143
  RECTUM              6               62
D12V4, binary
                  cls
clus                 0   1
  TCF7L2 MUTATED    10   8
  TCF7L2 WILD-TYPE  97 109
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     10    8
  TCF7L2 WILD-TYPE   97  109
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  FEMALE             10               97
  MALE                8              109
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TCF7L2 MUTATED                     11                             0
  TCF7L2 WILD-TYPE                  117                            24
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TCF7L2 MUTATED                       6                              0
  TCF7L2 WILD-TYPE                    51                              8
D12V5, multiclass
                                clus
vv                               TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       6               51
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  TCF7L2 MUTATED     0   5  10   3
  TCF7L2 WILD-TYPE   9  42 140  14
D12V6, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  T1              0                9
  T2              5               42
  T3             10              140
  T4              3               14
                  vv
clus                N0  N1  N2
  TCF7L2 MUTATED    11   4   3
  TCF7L2 WILD-TYPE 123  40  43
D12V7, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  N0             11              123
  N1              4               40
  N2              3               43
                  vv
clus                M0  M1 M1A
  TCF7L2 MUTATED    14   3   0
  TCF7L2 WILD-TYPE 175  28   1
D12V8, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  M0              14              175
  M1               3               28
  M1A              0                1
                  vv
clus                I II III IV
  TCF7L2 MUTATED    3  7   4  3
  TCF7L2 WILD-TYPE 45 75  56 26
D12V9, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  I                3               45
  II               7               75
  III              4               56
  IV               3               26
                  vv
clus                R0  R1  R2  RX
  TCF7L2 MUTATED    14   0   3   0
  TCF7L2 WILD-TYPE 174   2  24   1
D12V10, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  R0             14              174
  R1              0                2
  R2              3               24
  RX              0                1
D12V11, continuous

Clustering(13) Variable = FAT4 MUTATION ANALYSIS
D13V1, survival
                sevent
clus2             0  1
  FAT4 MUTATED   21  1
  FAT4 WILD-TYPE 85 13
  FAT4 MUTATED FAT4 WILD-TYPE 
            22             98 
  FAT4 MUTATED FAT4 WILD-TYPE 
             1             13 
$`FAT4 MUTATED`
TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
       14.70         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01D 
        1.02        30.02         4.01        27.02        20.98         0.99 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A02O TCGA-AG-3878 TCGA-AG-3887 
       35.01        35.01        26.01         0.92         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-A002 
        1.02         0.99         1.02        20.94 

$`FAT4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02        33.04        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4007 
        0.99         1.02         0.95         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FAT4 MUTATED FAT4 WILD-TYPE 
          0.92           0.92 
  FAT4 MUTATED FAT4 WILD-TYPE 
         35.01          72.07 
  FAT4 MUTATED FAT4 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
[1] "hr=" "1.8"
D13V2, continuous
D13V3, binary
                cls
clus               0   1
  FAT4 MUTATED    29  10
  FAT4 WILD-TYPE 125  58
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     29   10
  FAT4 WILD-TYPE  125   58
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  COLON            29            125
  RECTUM           10             58
D13V4, binary
                cls
clus              0  1
  FAT4 MUTATED   20 19
  FAT4 WILD-TYPE 87 98
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     20   19
  FAT4 WILD-TYPE   87   98
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  FEMALE           20             87
  MALE             19             98
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FAT4 MUTATED                     21                             7
  FAT4 WILD-TYPE                  107                            17
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FAT4 MUTATED                       9                              1
  FAT4 WILD-TYPE                    48                              7
D13V5, multiclass
                                clus
vv                               FAT4 MUTATED FAT4 WILD-TYPE
  COLON ADENOCARCINOMA                     21            107
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     9             48
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  FAT4 MUTATED     2  10  22   4
  FAT4 WILD-TYPE   7  37 128  13
D13V6, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  T1            2              7
  T2           10             37
  T3           22            128
  T4            4             13
                vv
clus              N0  N1  N2
  FAT4 MUTATED    27   6   6
  FAT4 WILD-TYPE 107  38  40
D13V7, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  N0           27            107
  N1            6             38
  N2            6             40
                vv
clus              M0  M1 M1A
  FAT4 MUTATED    37   1   0
  FAT4 WILD-TYPE 152  30   1
D13V8, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  M0            37            152
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  FAT4 MUTATED    9 17  11  1
  FAT4 WILD-TYPE 39 65  49 28
D13V9, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  I              9             39
  II            17             65
  III           11             49
  IV             1             28
                vv
clus              R0  R1  R2  RX
  FAT4 MUTATED    34   0   1   1
  FAT4 WILD-TYPE 154   2  26   0
D13V10, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  R0           34            154
  R1            0              2
  R2            1             26
  RX            1              0
D13V11, continuous

Clustering(14) Variable = KRTAP5-5 MUTATION ANALYSIS
D14V1, survival
                    sevent
clus2                  0   1
  KRTAP5-5 MUTATED     2   0
  KRTAP5-5 WILD-TYPE 104  14
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 2                118 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 0                 14 
$`KRTAP5-5 MUTATED`
TCGA-A6-2676 TCGA-AG-A00Y 
       14.70        23.01 

$`KRTAP5-5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
             14.70               0.92 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
             23.01              72.07 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
            18.855             10.770 
[1] "14.7 - 23.0 (18.9)" "0.9 - 72.1 (10.8)" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
  "KRTAP5-5 MUTATED" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE"   "KRTAP5-5 MUTATED" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
[1] "Remove cluster labels:" "KRTAP5-5 MUTATED"      
clus
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-2677         TCGA-A6-2678         TCGA-A6-2683 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-A6-3807         TCGA-A6-3808         TCGA-A6-3810 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3526         TCGA-AA-3555 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3562         TCGA-AA-3666         TCGA-AA-3679 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3710         TCGA-AA-3715 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3818         TCGA-AA-3837 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3846 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3854         TCGA-AA-3877 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3892 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3999 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4007         TCGA-AG-4008 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A011         TCGA-AG-A014 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" "KRTAP5-5 WILD-TYPE" 
        TCGA-AG-A036 
"KRTAP5-5 WILD-TYPE" 
D14V2, continuous
D14V3, binary
                    cls
clus                   0   1
  KRTAP5-5 MUTATED     2   2
  KRTAP5-5 WILD-TYPE 152  66
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE  152   66
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON                 2                152
  RECTUM                2                 66
D14V4, binary
                    cls
clus                   0   1
  KRTAP5-5 MUTATED     2   2
  KRTAP5-5 WILD-TYPE 105 115
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KRTAP5-5 MUTATED      2    2
  KRTAP5-5 WILD-TYPE  105  115
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  FEMALE                2                105
  MALE                  2                115
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  KRTAP5-5 MUTATED                      1                             1
  KRTAP5-5 WILD-TYPE                  127                            23
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  KRTAP5-5 MUTATED                       2                              0
  KRTAP5-5 WILD-TYPE                    55                              8
D14V5, multiclass
                                clus
vv                               KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  COLON ADENOCARCINOMA                          1                127
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  KRTAP5-5 MUTATED     0   0   3   0
  KRTAP5-5 WILD-TYPE   9  47 147  17
D14V6, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  T1                0                  9
  T2                0                 47
  T3                3                147
  T4                0                 17
                    vv
clus                  N0  N1  N2
  KRTAP5-5 MUTATED     4   0   0
  KRTAP5-5 WILD-TYPE 130  44  46
D14V7, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  N0                4                130
  N1                0                 44
  N2                0                 46
                    vv
clus                  M0  M1 M1A
  KRTAP5-5 MUTATED     4   0   0
  KRTAP5-5 WILD-TYPE 185  31   1
D14V8, multiclass
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  M0                 4                185
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  KRTAP5-5 MUTATED    0  4   0  0
  KRTAP5-5 WILD-TYPE 48 78  60 29
D14V9, multiclass
     clus
vv    KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  I                  0                 48
  II                 4                 78
  III                0                 60
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  KRTAP5-5 MUTATED     4   0   0   0
  KRTAP5-5 WILD-TYPE 184   2  27   1
D14V10, multiclass
    clus
vv   KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  R0                4                184
  R1                0                  2
  R2                0                 27
  RX                0                  1
D14V11, continuous

Clustering(15) Variable = ACVR1B MUTATION ANALYSIS
D15V1, survival
                  sevent
clus2               0  1
  ACVR1B MUTATED    8  2
  ACVR1B WILD-TYPE 98 12
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              10              110 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
               2               12 
$`ACVR1B MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A01R 
       10.92         0.99         0.99        18.02        20.98        35.01 
TCGA-AA-A029 TCGA-AA-A02J TCGA-AA-A03F TCGA-AG-A01L 
       51.95         5.03        18.02        12.00 

$`ACVR1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       20.98        39.06        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W TCGA-AG-A01Y 
       17.03        15.91        13.02         1.02        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ACVR1B MUTATED ACVR1B WILD-TYPE 
            0.99             0.92 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
           51.95            72.07 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
          15.010           10.505 
[1] "1.0 - 52.0 (15.0)" "0.9 - 72.1 (10.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
[1] "hr=" "1.5"
D15V2, continuous
D15V3, binary
                  cls
clus                 0   1
  ACVR1B MUTATED    13   1
  ACVR1B WILD-TYPE 141  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED     13    1
  ACVR1B WILD-TYPE  141   67
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D15V4, binary
                  cls
clus                 0   1
  ACVR1B MUTATED     7   7
  ACVR1B WILD-TYPE 100 110
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED      7    7
  ACVR1B WILD-TYPE  100  110
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  FEMALE              7              100
  MALE                7              110
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ACVR1B MUTATED                      8                             5
  ACVR1B WILD-TYPE                  120                            19
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ACVR1B MUTATED                       1                              0
  ACVR1B WILD-TYPE                    56                              8
D15V5, multiclass
                                clus
vv                               ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ACVR1B MUTATED     1   0  10   3
  ACVR1B WILD-TYPE   8  47 140  14
D15V6, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  T1              1                8
  T2              0               47
  T3             10              140
  T4              3               14
                  vv
clus                N0  N1  N2
  ACVR1B MUTATED     8   3   3
  ACVR1B WILD-TYPE 126  41  43
D15V7, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  N0              8              126
  N1              3               41
  N2              3               43
                  vv
clus                M0  M1 M1A
  ACVR1B MUTATED    13   1   0
  ACVR1B WILD-TYPE 176  30   1
D15V8, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  M0              13              176
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  ACVR1B MUTATED    1  6   6  1
  ACVR1B WILD-TYPE 47 76  54 28
D15V9, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  I                1               47
  II               6               76
  III              6               54
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  ACVR1B MUTATED    13   0   1   0
  ACVR1B WILD-TYPE 175   2  26   1
D15V10, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  R0             13              175
  R1              0                2
  R2              1               26
  RX              0                1
D15V11, continuous

Clustering(16) Variable = WBSCR17 MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                0  1
  WBSCR17 MUTATED    9  0
  WBSCR17 WILD-TYPE 97 14
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                9               111 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                0                14 
$`WBSCR17 MUTATED`
TCGA-AA-3562 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 
        1.02         1.02         0.99         1.02         1.02        20.98 
TCGA-AA-A01X TCGA-AG-3894 TCGA-AG-A002 
       26.01         0.99        20.94 

$`WBSCR17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z 
        1.02        35.01         1.02        33.04        35.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             0.99              0.92 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            26.01             72.07 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 26.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D16V2, continuous
D16V3, binary
                   cls
clus                  0   1
  WBSCR17 MUTATED    17   2
  WBSCR17 WILD-TYPE 137  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     17    2
  WBSCR17 WILD-TYPE  137   66
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON               17               137
  RECTUM               2                66
D16V4, binary
                   cls
clus                  0   1
  WBSCR17 MUTATED     9  10
  WBSCR17 WILD-TYPE  98 107
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      9   10
  WBSCR17 WILD-TYPE   98  107
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               9                98
  MALE                10               107
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  WBSCR17 MUTATED                     15                             2
  WBSCR17 WILD-TYPE                  113                            22
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  WBSCR17 MUTATED                       2                              0
  WBSCR17 WILD-TYPE                    55                              8
D16V5, multiclass
                                clus
vv                               WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON ADENOCARCINOMA                        15               113
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  WBSCR17 MUTATED     0   3  14   2
  WBSCR17 WILD-TYPE   9  44 136  15
D16V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3              14               136
  T4               2                15
                   vv
clus                 N0  N1  N2
  WBSCR17 MUTATED    13   3   3
  WBSCR17 WILD-TYPE 121  41  43
D16V7, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0              13               121
  N1               3                41
  N2               3                43
                   vv
clus                 M0  M1 M1A
  WBSCR17 MUTATED    17   1   0
  WBSCR17 WILD-TYPE 172  30   1
D16V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               17               172
  M1                1                30
  M1A               0                 1
                   vv
clus                 I II III IV
  WBSCR17 MUTATED    1 11   5  1
  WBSCR17 WILD-TYPE 47 71  55 28
D16V9, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  I                 1                47
  II               11                71
  III               5                55
  IV                1                28
                   vv
clus                 R0  R1  R2  RX
  WBSCR17 MUTATED    15   0   1   1
  WBSCR17 WILD-TYPE 173   2  26   0
D16V10, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  R0              15               173
  R1               0                 2
  R2               1                26
  RX               1                 0
D16V11, continuous

Clustering(17) Variable = PCDH9 MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  PCDH9 MUTATED   13  3
  PCDH9 WILD-TYPE 93 11
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             104 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
              3              11 
$`PCDH9 MUTATED`
TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3939 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01K 
        1.02         1.02         4.01        17.00        20.98        13.02 
TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A026 TCGA-AG-A02N 
        0.99        20.94         1.94        61.94 

$`PCDH9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3837 
        1.02         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 
        0.95         0.99         0.92         1.02         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02X 
       70.03        63.98        10.98        49.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PCDH9 MUTATED PCDH9 WILD-TYPE 
           0.99            0.92 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
          61.94           72.07 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
[1] "hr=" "2.6"
D17V2, continuous
D17V3, binary
                 cls
clus                0   1
  PCDH9 MUTATED    16   6
  PCDH9 WILD-TYPE 138  62
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     16    6
  PCDH9 WILD-TYPE  138   62
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON             16             138
  RECTUM             6              62
D17V4, binary
                 cls
clus                0   1
  PCDH9 MUTATED     7  15
  PCDH9 WILD-TYPE 100 102
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED      7   15
  PCDH9 WILD-TYPE  100  102
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  FEMALE             7             100
  MALE              15             102
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PCDH9 MUTATED                     13                             3
  PCDH9 WILD-TYPE                  115                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PCDH9 MUTATED                       6                              0
  PCDH9 WILD-TYPE                    51                              8
D17V5, multiclass
                                clus
vv                               PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON ADENOCARCINOMA                      13             115
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  PCDH9 MUTATED     0   3  16   3
  PCDH9 WILD-TYPE   9  44 134  14
D17V6, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  T1             0               9
  T2             3              44
  T3            16             134
  T4             3              14
                 vv
clus               N0  N1  N2
  PCDH9 MUTATED    15   3   4
  PCDH9 WILD-TYPE 119  41  42
D17V7, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  N0            15             119
  N1             3              41
  N2             4              42
                 vv
clus               M0  M1 M1A
  PCDH9 MUTATED    20   1   0
  PCDH9 WILD-TYPE 169  30   1
D17V8, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  PCDH9 MUTATED    1 13   6  1
  PCDH9 WILD-TYPE 47 69  54 28
D17V9, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  I               1              47
  II             13              69
  III             6              54
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  PCDH9 MUTATED    18   1   1   0
  PCDH9 WILD-TYPE 170   1  26   1
D17V10, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  R0            18             170
  R1             1               1
  R2             1              26
  RX             0               1
D17V11, continuous

Clustering(18) Variable = LRP1B MUTATION ANALYSIS
D18V1, survival
                 sevent
clus2              0  1
  LRP1B MUTATED   18  3
  LRP1B WILD-TYPE 88 11
  LRP1B MUTATED LRP1B WILD-TYPE 
             21              99 
  LRP1B MUTATED LRP1B WILD-TYPE 
              3              11 
$`LRP1B MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3939 
       16.54         8.09         1.02         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02        18.02        18.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02H TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 
        1.02        35.01         2.01        40.96        39.95         0.95 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A036 
        1.02        20.94        72.07 

$`LRP1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
       10.92         9.14         0.99         1.02         1.02         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A03F TCGA-AA-A03J 
       51.95        39.95         5.03         0.92        18.02        40.93 
TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
       16.31        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       61.94        40.96        38.01 

  LRP1B MUTATED LRP1B WILD-TYPE 
           0.95            0.92 
  LRP1B MUTATED LRP1B WILD-TYPE 
          72.07           70.03 
  LRP1B MUTATED LRP1B WILD-TYPE 
           4.01           12.00 
[1] "0.9 - 72.1 (4.0)"  "0.9 - 70.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
[1] "hr=" "1.2"
D18V2, continuous
D18V3, binary
                 cls
clus                0   1
  LRP1B MUTATED    29   9
  LRP1B WILD-TYPE 125  59
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     29    9
  LRP1B WILD-TYPE  125   59
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  COLON             29             125
  RECTUM             9              59
D18V4, binary
                 cls
clus                0   1
  LRP1B MUTATED    22  17
  LRP1B WILD-TYPE  85 100
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     22   17
  LRP1B WILD-TYPE   85  100
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            22              85
  MALE              17             100
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LRP1B MUTATED                     18                            10
  LRP1B WILD-TYPE                  110                            14
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LRP1B MUTATED                       9                              0
  LRP1B WILD-TYPE                    48                              8
D18V5, multiclass
                                clus
vv                               LRP1B MUTATED LRP1B WILD-TYPE
  COLON ADENOCARCINOMA                      18             110
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  LRP1B MUTATED     2   7  25   5
  LRP1B WILD-TYPE   7  40 125  12
D18V6, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  T1             2               7
  T2             7              40
  T3            25             125
  T4             5              12
                 vv
clus               N0  N1  N2
  LRP1B MUTATED    25   6   8
  LRP1B WILD-TYPE 109  38  38
D18V7, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  N0            25             109
  N1             6              38
  N2             8              38
                 vv
clus               M0  M1 M1A
  LRP1B MUTATED    33   4   0
  LRP1B WILD-TYPE 156  27   1
D18V8, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  M0             33             156
  M1              4              27
  M1A             0               1
                 vv
clus               I II III IV
  LRP1B MUTATED    8 16  10  4
  LRP1B WILD-TYPE 40 66  50 25
D18V9, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  I               8              40
  II             16              66
  III            10              50
  IV              4              25
                 vv
clus               R0  R1  R2  RX
  LRP1B MUTATED    33   0   3   0
  LRP1B WILD-TYPE 155   2  24   1
D18V10, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  R0            33             155
  R1             0               2
  R2             3              24
  RX             0               1
D18V11, continuous

Clustering(19) Variable = TNFRSF10C MUTATION ANALYSIS
D19V1, survival
                     sevent
clus2                   0   1
  TNFRSF10C MUTATED     1   0
  TNFRSF10C WILD-TYPE 105  14
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                 119 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  0                  14 
$`TNFRSF10C MUTATED`
TCGA-AA-3844 
        0.92 

$`TNFRSF10C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92                0.92 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               72.07 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               10.98 
[1] "0.9 - 0.9 (0.9)"   "0.9 - 72.1 (11.0)"
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071          TCGA-AF-2689          TCGA-AF-2691 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2692          TCGA-AF-3400          TCGA-AF-3913 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3581          TCGA-AG-3582          TCGA-AG-3583 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3587          TCGA-AG-3599          TCGA-AG-3726 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3727          TCGA-AG-3878          TCGA-AG-3887 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3892          TCGA-AG-3893          TCGA-AG-3894 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3999          TCGA-AG-4001          TCGA-AG-4007 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4008          TCGA-AG-A002          TCGA-AG-A008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00C          TCGA-AG-A00H          TCGA-AG-A00Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A011          TCGA-AG-A014          TCGA-AG-A015 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A016          TCGA-AG-A01L          TCGA-AG-A01W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01Y          TCGA-AG-A020          TCGA-AG-A025 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A026          TCGA-AG-A02G          TCGA-AG-A02N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02X          TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
[1] "Remove cluster labels:" "TNFRSF10C MUTATED"     
clus
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                 119 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3846 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3848          TCGA-AA-3854          TCGA-AA-3877 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3939          TCGA-AA-3941          TCGA-AA-3947 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3949          TCGA-AA-3952          TCGA-AA-3966 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3977          TCGA-AA-3986 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A010          TCGA-AA-A017          TCGA-AA-A01D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01P          TCGA-AA-A01Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01R          TCGA-AA-A01S          TCGA-AA-A01T 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01V          TCGA-AA-A01X          TCGA-AA-A01Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02O 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AY-4070          TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-2689          TCGA-AF-2691          TCGA-AF-2692 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AF-3400          TCGA-AF-3913          TCGA-AG-3581 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3582          TCGA-AG-3583          TCGA-AG-3587 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3599          TCGA-AG-3726          TCGA-AG-3727 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3878          TCGA-AG-3887          TCGA-AG-3892 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-3893          TCGA-AG-3894          TCGA-AG-3999 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-4001          TCGA-AG-4007          TCGA-AG-4008 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A002          TCGA-AG-A008          TCGA-AG-A00C 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A00H          TCGA-AG-A00Y          TCGA-AG-A011 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A014          TCGA-AG-A015          TCGA-AG-A016 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A01L          TCGA-AG-A01W          TCGA-AG-A01Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A020          TCGA-AG-A025          TCGA-AG-A026 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A02G          TCGA-AG-A02N          TCGA-AG-A02X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AG-A032          TCGA-AG-A036 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
D19V2, continuous
D19V3, binary
                     cls
clus                    0   1
  TNFRSF10C MUTATED     6   0
  TNFRSF10C WILD-TYPE 148  68
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  148   68
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON                  6                 148
  RECTUM                 0                  68
D19V4, binary
                     cls
clus                    0   1
  TNFRSF10C MUTATED     2   4
  TNFRSF10C WILD-TYPE 105 113
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      2    4
  TNFRSF10C WILD-TYPE  105  113
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  FEMALE                 2                 105
  MALE                   4                 113
                     vv
clus                  COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TNFRSF10C MUTATED                      6                             0
  TNFRSF10C WILD-TYPE                  122                            24
                     vv
clus                  RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TNFRSF10C MUTATED                       0                              0
  TNFRSF10C WILD-TYPE                    57                              8
D19V5, multiclass
                                clus
vv                               TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON ADENOCARCINOMA                           6                 122
  COLON MUCINOUS ADENOCARCINOMA                  0                  24
  RECTAL ADENOCARCINOMA                          0                  57
  RECTAL MUCINOUS ADENOCARCINOMA                 0                   8
                     vv
clus                   T1  T2  T3  T4
  TNFRSF10C MUTATED     0   2   2   2
  TNFRSF10C WILD-TYPE   9  45 148  15
D19V6, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  T1                 0                   9
  T2                 2                  45
  T3                 2                 148
  T4                 2                  15
                     vv
clus                   N0  N1  N2
  TNFRSF10C MUTATED     2   1   3
  TNFRSF10C WILD-TYPE 132  43  43
D19V7, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  N0                 2                 132
  N1                 1                  43
  N2                 3                  43
                     vv
clus                   M0  M1 M1A
  TNFRSF10C MUTATED     3   3   0
  TNFRSF10C WILD-TYPE 186  28   1
D19V8, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  M0                  3                 186
  M1                  3                  28
  M1A                 0                   1
                     vv
clus                   I II III IV
  TNFRSF10C MUTATED    2  0   1  3
  TNFRSF10C WILD-TYPE 46 82  59 26
D19V9, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  I                   2                  46
  II                  0                  82
  III                 1                  59
  IV                  3                  26
                     vv
clus                   R0  R1  R2  RX
  TNFRSF10C MUTATED     3   0   3   0
  TNFRSF10C WILD-TYPE 185   2  24   1
D19V10, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  R0                 3                 185
  R1                 0                   2
  R2                 3                  24
  RX                 0                   1
D19V11, continuous

Clustering(20) Variable = MAP2K4 MUTATION ANALYSIS
D20V1, survival
                  sevent
clus2                0   1
  MAP2K4 MUTATED     5   2
  MAP2K4 WILD-TYPE 101  12
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               7              113 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               2               12 
$`MAP2K4 MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3727 
        1.02         1.02         0.99         4.01        20.98         0.95 
TCGA-AG-A00Y 
       23.01 

$`MAP2K4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            0.95             0.92 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
           23.01            72.07 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            1.02            12.00 
[1] "0.9 - 23.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
[1] "hr=" "4.6"
D20V2, continuous
D20V3, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED     9   2
  MAP2K4 WILD-TYPE 145  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      9    2
  MAP2K4 WILD-TYPE  145   66
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON               9              145
  RECTUM              2               66
D20V4, binary
                  cls
clus                 0   1
  MAP2K4 MUTATED     6   5
  MAP2K4 WILD-TYPE 101 112
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      6    5
  MAP2K4 WILD-TYPE  101  112
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  FEMALE              6              101
  MALE                5              112
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  MAP2K4 MUTATED                      6                             2
  MAP2K4 WILD-TYPE                  122                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  MAP2K4 MUTATED                       2                              0
  MAP2K4 WILD-TYPE                    55                              8
D20V5, multiclass
                                clus
vv                               MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  MAP2K4 MUTATED     0   1   8   2
  MAP2K4 WILD-TYPE   9  46 142  15
D20V6, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              8              142
  T4              2               15
                  vv
clus                N0  N1  N2
  MAP2K4 MUTATED     8   2   1
  MAP2K4 WILD-TYPE 126  42  45
D20V7, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  N0              8              126
  N1              2               42
  N2              1               45
                  vv
clus                M0  M1 M1A
  MAP2K4 MUTATED    11   0   0
  MAP2K4 WILD-TYPE 178  31   1
D20V8, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  MAP2K4 MUTATED    1  7   3  0
  MAP2K4 WILD-TYPE 47 75  57 29
D20V9, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  I                1               47
  II               7               75
  III              3               57
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  MAP2K4 MUTATED    10   0   0   0
  MAP2K4 WILD-TYPE 178   2  27   1
D20V10, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  R0             10              178
  R1              0                2
  R2              0               27
  RX              0                1
D20V11, continuous

Clustering(21) Variable = KIAA1804 MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                 0  1
  KIAA1804 MUTATED    9  0
  KIAA1804 WILD-TYPE 97 14
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 9                111 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
                 0                 14 
$`KIAA1804 MUTATED`
TCGA-AA-3555 TCGA-AA-3966 TCGA-AA-A010 TCGA-AF-2691 TCGA-AG-3582 TCGA-AG-3727 
        0.99         1.02        20.98        10.62         1.02         0.95 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A02N 
       20.94        13.91        61.94 

$`KIAA1804 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 
       18.02        40.93        16.31         0.95        15.85        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72        10.39         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02         1.02         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
              0.95               0.92 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
             61.94              72.07 
  KIAA1804 MUTATED KIAA1804 WILD-TYPE 
             10.62              10.98 
[1] "0.9 - 61.9 (10.6)" "0.9 - 72.1 (11.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
  "KIAA1804 MUTATED" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED"   "KIAA1804 MUTATED" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE"   "KIAA1804 MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" "KIAA1804 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D21V2, continuous
D21V3, binary
                    cls
clus                   0   1
  KIAA1804 MUTATED     6   9
  KIAA1804 WILD-TYPE 148  59
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      6    9
  KIAA1804 WILD-TYPE  148   59
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON                 6                148
  RECTUM                9                 59
D21V4, binary
                    cls
clus                   0   1
  KIAA1804 MUTATED     9   6
  KIAA1804 WILD-TYPE  98 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1804 MUTATED      9    6
  KIAA1804 WILD-TYPE   98  111
        clus
vv       KIAA1804 MUTATED KIAA1804 WILD-TYPE
  FEMALE                9                 98
  MALE                  6                111
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  KIAA1804 MUTATED                      3                             2
  KIAA1804 WILD-TYPE                  125                            22
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  KIAA1804 MUTATED                       8                              1
  KIAA1804 WILD-TYPE                    49                              7
D21V5, multiclass
                                clus
vv                               KIAA1804 MUTATED KIAA1804 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         8                 49
  RECTAL MUCINOUS ADENOCARCINOMA                1                  7
                    vv
clus                  T1  T2  T3  T4
  KIAA1804 MUTATED     1   2  11   1
  KIAA1804 WILD-TYPE   8  45 139  16
D21V6, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3               11                139
  T4                1                 16
                    vv
clus                  N0  N1  N2
  KIAA1804 MUTATED    10   4   1
  KIAA1804 WILD-TYPE 124  40  45
D21V7, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  N0               10                124
  N1                4                 40
  N2                1                 45
                    vv
clus                  M0  M1 M1A
  KIAA1804 MUTATED    13   2   0
  KIAA1804 WILD-TYPE 176  29   1
D21V8, multiclass
     clus
vv    KIAA1804 MUTATED KIAA1804 WILD-TYPE
  M0                13                176
  M1                 2                 29
  M1A                0                  1
                    vv
clus                  I II III IV
  KIAA1804 MUTATED    3  7   3  2
  KIAA1804 WILD-TYPE 45 75  57 27
D21V9, multiclass
     clus
vv    KIAA1804 MUTATED KIAA1804 WILD-TYPE
  I                  3                 45
  II                 7                 75
  III                3                 57
  IV                 2                 27
                    vv
clus                  R0  R1  R2  RX
  KIAA1804 MUTATED    12   0   2   0
  KIAA1804 WILD-TYPE 176   2  25   1
D21V10, multiclass
    clus
vv   KIAA1804 MUTATED KIAA1804 WILD-TYPE
  R0               12                176
  R1                0                  2
  R2                2                 25
  RX                0                  1
D21V11, continuous

Clustering(22) Variable = NRXN1 MUTATION ANALYSIS
D22V1, survival
                 sevent
clus2              0  1
  NRXN1 MUTATED    9  1
  NRXN1 WILD-TYPE 97 13
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             10             110 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              1              13 
$`NRXN1 MUTATED`
TCGA-AA-3526 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A02F TCGA-AG-A02N 
       35.01        20.98        39.95        61.94 

$`NRXN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 
        1.02        35.01         1.02        33.04        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  NRXN1 MUTATED NRXN1 WILD-TYPE 
           0.99            0.92 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          61.94           72.07 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
         12.495          10.950 
[1] "1.0 - 61.9 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
[1] "hr=" "1.5"
D22V2, continuous
D22V3, binary
                 cls
clus                0   1
  NRXN1 MUTATED    17   3
  NRXN1 WILD-TYPE 137  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     17    3
  NRXN1 WILD-TYPE  137   65
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON             17             137
  RECTUM             3              65
D22V4, binary
                 cls
clus                0   1
  NRXN1 MUTATED     9  11
  NRXN1 WILD-TYPE  98 106
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      9   11
  NRXN1 WILD-TYPE   98  106
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE             9              98
  MALE              11             106
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NRXN1 MUTATED                     14                             2
  NRXN1 WILD-TYPE                  114                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NRXN1 MUTATED                       3                              0
  NRXN1 WILD-TYPE                    54                              8
D22V5, multiclass
                                clus
vv                               NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  NRXN1 MUTATED     1   6  10   3
  NRXN1 WILD-TYPE   8  41 140  14
D22V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             1               8
  T2             6              41
  T3            10             140
  T4             3              14
                 vv
clus               N0  N1  N2
  NRXN1 MUTATED    17   2   1
  NRXN1 WILD-TYPE 117  42  45
D22V7, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  N0            17             117
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  NRXN1 MUTATED    18   1   0
  NRXN1 WILD-TYPE 171  30   1
D22V8, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  M0             18             171
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  NRXN1 MUTATED    5 11   2  1
  NRXN1 WILD-TYPE 43 71  58 28
D22V9, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  I               5              43
  II             11              71
  III             2              58
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  NRXN1 MUTATED    18   0   1   0
  NRXN1 WILD-TYPE 170   2  26   1
D22V10, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  R0            18             170
  R1             0               2
  R2             1              26
  RX             0               1
D22V11, continuous

Clustering(23) Variable = KLHL4 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED    9  3
  KLHL4 WILD-TYPE 97 11
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             108 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              3              11 
$`KLHL4 MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99        30.02        18.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01P TCGA-AA-A01R TCGA-AY-4070 TCGA-AF-2691 TCGA-AG-3892 
        0.99        38.07        35.01        16.31        10.62         1.02 

$`KLHL4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O 
       18.02        19.00        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S 
       13.02        12.00        12.00        13.02         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 
       18.02        40.93         0.95        15.85        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           0.99            0.92 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          38.07           72.07 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
         13.465          10.950 
[1] "1.0 - 38.1 (13.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
[1] "hr=" "2.7"
D23V2, continuous
D23V3, binary
                 cls
clus                0   1
  KLHL4 MUTATED    12   4
  KLHL4 WILD-TYPE 142  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED     12    4
  KLHL4 WILD-TYPE  142   64
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON             12             142
  RECTUM             4              64
D23V4, binary
                 cls
clus                0   1
  KLHL4 MUTATED    11   5
  KLHL4 WILD-TYPE  96 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED     11    5
  KLHL4 WILD-TYPE   96  112
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE            11              96
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  KLHL4 MUTATED                      8                             4
  KLHL4 WILD-TYPE                  120                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  KLHL4 MUTATED                       2                              1
  KLHL4 WILD-TYPE                    55                              7
D23V5, multiclass
                                clus
vv                               KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  KLHL4 MUTATED     2   0  11   3
  KLHL4 WILD-TYPE   7  47 139  14
D23V6, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  T1             2               7
  T2             0              47
  T3            11             139
  T4             3              14
                 vv
clus               N0  N1  N2
  KLHL4 MUTATED    10   2   4
  KLHL4 WILD-TYPE 124  42  42
D23V7, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             4              42
                 vv
clus               M0  M1 M1A
  KLHL4 MUTATED    16   0   0
  KLHL4 WILD-TYPE 173  31   1
D23V8, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  KLHL4 MUTATED    2  8   6  0
  KLHL4 WILD-TYPE 46 74  54 29
D23V9, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  I               2              46
  II              8              74
  III             6              54
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  KLHL4 MUTATED    15   1   0   0
  KLHL4 WILD-TYPE 173   1  27   1
D23V10, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  R0            15             173
  R1             1               1
  R2             0              27
  RX             0               1
D23V11, continuous

Clustering(24) Variable = SOX9 MUTATION ANALYSIS
D24V1, survival
                sevent
clus2              0   1
  SOX9 MUTATED     2   1
  SOX9 WILD-TYPE 104  13
  SOX9 MUTATED SOX9 WILD-TYPE 
             3            117 
  SOX9 MUTATED SOX9 WILD-TYPE 
             1             13 
$`SOX9 MUTATED`
TCGA-AA-3939 TCGA-AA-A03F TCGA-AG-A025 
        0.99        18.02        49.94 

$`SOX9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        39.95        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        63.98        10.98         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  SOX9 MUTATED SOX9 WILD-TYPE 
          0.99           0.92 
  SOX9 MUTATED SOX9 WILD-TYPE 
         49.94          72.07 
  SOX9 MUTATED SOX9 WILD-TYPE 
         18.02          10.92 
[1] "1.0 - 49.9 (18.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SOX9 WILD-TYPE"   "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
[1] "hr=" "1.8"
D24V2, continuous
D24V3, binary
                cls
clus               0   1
  SOX9 MUTATED     9   1
  SOX9 WILD-TYPE 145  67
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      9    1
  SOX9 WILD-TYPE  145   67
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  COLON             9            145
  RECTUM            1             67
D24V4, binary
                cls
clus               0   1
  SOX9 MUTATED     6   4
  SOX9 WILD-TYPE 101 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      6    4
  SOX9 WILD-TYPE  101  113
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  FEMALE            6            101
  MALE              4            113
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SOX9 MUTATED                      8                             1
  SOX9 WILD-TYPE                  120                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SOX9 MUTATED                       1                              0
  SOX9 WILD-TYPE                    56                              8
D24V5, multiclass
                                clus
vv                               SOX9 MUTATED SOX9 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  SOX9 MUTATED     1   0   9   0
  SOX9 WILD-TYPE   8  47 141  17
D24V6, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  T1            1              8
  T2            0             47
  T3            9            141
  T4            0             17
                vv
clus              N0  N1  N2
  SOX9 MUTATED     7   1   2
  SOX9 WILD-TYPE 127  43  44
D24V7, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  N0            7            127
  N1            1             43
  N2            2             44
                vv
clus              M0  M1 M1A
  SOX9 MUTATED     9   1   0
  SOX9 WILD-TYPE 180  30   1
D24V8, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  M0             9            180
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  SOX9 MUTATED    1  6   2  1
  SOX9 WILD-TYPE 47 76  58 28
D24V9, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  I              1             47
  II             6             76
  III            2             58
  IV             1             28
                vv
clus              R0  R1  R2  RX
  SOX9 MUTATED     9   0   1   0
  SOX9 WILD-TYPE 179   2  26   1
D24V10, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  R0            9            179
  R1            0              2
  R2            1             26
  RX            0              1
D24V11, continuous

Clustering(25) Variable = PRDM9 MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  PRDM9 MUTATED   10  0
  PRDM9 WILD-TYPE 96 14
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             10             110 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
              0              14 
$`PRDM9 MUTATED`
TCGA-A6-3810 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3727 
        8.09         1.02         0.99        20.98        35.01         0.95 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A01L TCGA-AG-A02N 
        1.02        20.94        12.00        61.94 

$`PRDM9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        1.02         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W 
       23.01        17.03        15.91        13.02         1.02        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PRDM9 MUTATED PRDM9 WILD-TYPE 
           0.95            0.92 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
          61.94           72.07 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
         10.045          10.950 
[1] "0.9 - 61.9 (10.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D25V2, continuous
D25V3, binary
                 cls
clus                0   1
  PRDM9 MUTATED    11   5
  PRDM9 WILD-TYPE 143  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED     11    5
  PRDM9 WILD-TYPE  143   63
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON             11             143
  RECTUM             5              63
D25V4, binary
                 cls
clus                0   1
  PRDM9 MUTATED     9   7
  PRDM9 WILD-TYPE  98 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED      9    7
  PRDM9 WILD-TYPE   98  110
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  FEMALE             9              98
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PRDM9 MUTATED                      8                             2
  PRDM9 WILD-TYPE                  120                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PRDM9 MUTATED                       5                              0
  PRDM9 WILD-TYPE                    52                              8
D25V5, multiclass
                                clus
vv                               PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  PRDM9 MUTATED     1   2  10   3
  PRDM9 WILD-TYPE   8  45 140  14
D25V6, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            10             140
  T4             3              14
                 vv
clus               N0  N1  N2
  PRDM9 MUTATED    11   4   1
  PRDM9 WILD-TYPE 123  40  45
D25V7, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  N0            11             123
  N1             4              40
  N2             1              45
                 vv
clus               M0  M1 M1A
  PRDM9 MUTATED    15   0   1
  PRDM9 WILD-TYPE 174  31   0
D25V8, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  M0             15             174
  M1              0              31
  M1A             1               0
                 vv
clus               I II III IV
  PRDM9 MUTATED    3  8   4  1
  PRDM9 WILD-TYPE 45 74  56 28
D25V9, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  I               3              45
  II              8              74
  III             4              56
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  PRDM9 MUTATED    16   0   0   0
  PRDM9 WILD-TYPE 172   2  27   1
D25V10, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  R0            16             172
  R1             0               2
  R2             0              27
  RX             0               1
D25V11, continuous

Clustering(26) Variable = PCBP1 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2               0   1
  PCBP1 MUTATED     4   0
  PCBP1 WILD-TYPE 102  14
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             116 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              0              14 
$`PCBP1 MUTATED`
TCGA-AA-3941 TCGA-AA-A01I TCGA-AG-3894 TCGA-AG-A002 
        1.02        12.00         0.99        20.94 

$`PCBP1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         1.02         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PCBP1 MUTATED PCBP1 WILD-TYPE 
           0.99            0.92 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
          20.94           72.07 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
           6.51           10.95 
[1] "1.0 - 20.9 (6.5)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE"   "PCBP1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D26V2, continuous
D26V3, binary
                 cls
clus                0   1
  PCBP1 MUTATED     4   2
  PCBP1 WILD-TYPE 150  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      4    2
  PCBP1 WILD-TYPE  150   66
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D26V4, binary
                 cls
clus                0   1
  PCBP1 MUTATED     2   4
  PCBP1 WILD-TYPE 105 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      2    4
  PCBP1 WILD-TYPE  105  113
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  FEMALE             2             105
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PCBP1 MUTATED                      4                             0
  PCBP1 WILD-TYPE                  124                            24
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PCBP1 MUTATED                       2                              0
  PCBP1 WILD-TYPE                    55                              8
D26V5, multiclass
                                clus
vv                               PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  PCBP1 MUTATED     0   2   3   1
  PCBP1 WILD-TYPE   9  45 147  16
D26V6, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
                 vv
clus               N0  N1  N2
  PCBP1 MUTATED     5   1   0
  PCBP1 WILD-TYPE 129  43  46
D26V7, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  PCBP1 MUTATED     5   0   1
  PCBP1 WILD-TYPE 184  31   0
D26V8, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             1               0
                 vv
clus               I II III IV
  PCBP1 MUTATED    2  3   0  1
  PCBP1 WILD-TYPE 46 79  60 28
D26V9, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  I               2              46
  II              3              79
  III             0              60
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  PCBP1 MUTATED     6   0   0   0
  PCBP1 WILD-TYPE 182   2  27   1
D26V10, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  R0             6             182
  R1             0               2
  R2             0              27
  RX             0               1
D26V11, continuous

Clustering(27) Variable = DMD MUTATION ANALYSIS
D27V1, survival
               sevent
clus2            0  1
  DMD MUTATED   18  4
  DMD WILD-TYPE 88 10
  DMD MUTATED DMD WILD-TYPE 
           22            98 
  DMD MUTATED DMD WILD-TYPE 
            4            10 
$`DMD MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 TCGA-AA-3846 
       16.54        14.70        10.92         1.02         1.02         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        30.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A024 
        4.01        20.98        38.07         1.02        33.04        39.06 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02G TCGA-AG-A032 
        1.02        20.94        38.93        38.01 

$`DMD WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 
       13.91        17.19        17.79        14.37        15.52         9.14 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       12.00        12.00        13.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N 
       70.03        63.98        10.98        49.94         1.94        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  DMD MUTATED DMD WILD-TYPE 
         0.99          0.92 
  DMD MUTATED DMD WILD-TYPE 
        39.06         72.07 
  DMD MUTATED DMD WILD-TYPE 
        12.81         10.80 
[1] "1.0 - 39.1 (12.8)" "0.9 - 72.1 (10.8)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
[1] "hr=" "1.7"
D27V2, continuous
D27V3, binary
               cls
clus              0   1
  DMD MUTATED    27   6
  DMD WILD-TYPE 127  62
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     27    6
  DMD WILD-TYPE  127   62
        clus
vv       DMD MUTATED DMD WILD-TYPE
  COLON           27           127
  RECTUM           6            62
D27V4, binary
               cls
clus              0   1
  DMD MUTATED    20  13
  DMD WILD-TYPE  87 104
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     20   13
  DMD WILD-TYPE   87  104
        clus
vv       DMD MUTATED DMD WILD-TYPE
  FEMALE          20            87
  MALE            13           104
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DMD MUTATED                     18                             9
  DMD WILD-TYPE                  110                            15
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DMD MUTATED                       6                              0
  DMD WILD-TYPE                    51                              8
D27V5, multiclass
                                clus
vv                               DMD MUTATED DMD WILD-TYPE
  COLON ADENOCARCINOMA                    18           110
  COLON MUCINOUS ADENOCARCINOMA            9            15
  RECTAL ADENOCARCINOMA                    6            51
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
               vv
clus             T1  T2  T3  T4
  DMD MUTATED     1   4  23   4
  DMD WILD-TYPE   8  43 127  13
D27V6, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  T1           1             8
  T2           4            43
  T3          23           127
  T4           4            13
               vv
clus             N0  N1  N2
  DMD MUTATED    17  11   5
  DMD WILD-TYPE 117  33  41
D27V7, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  N0          17           117
  N1          11            33
  N2           5            41
               vv
clus             M0  M1 M1A
  DMD MUTATED    30   2   0
  DMD WILD-TYPE 159  29   1
D27V8, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  M0           30           159
  M1            2            29
  M1A           0             1
               vv
clus             I II III IV
  DMD MUTATED    2 14  14  2
  DMD WILD-TYPE 46 68  46 27
D27V9, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  I             2            46
  II           14            68
  III          14            46
  IV            2            27
               vv
clus             R0  R1  R2  RX
  DMD MUTATED    28   0   2   0
  DMD WILD-TYPE 160   2  25   1
D27V10, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  R0          28           160
  R1           0             2
  R2           2            25
  RX           0             1
D27V11, continuous

Clustering(28) Variable = CSMD1 MUTATION ANALYSIS
D28V1, survival
                 sevent
clus2              0  1
  CSMD1 MUTATED   13  5
  CSMD1 WILD-TYPE 93  9
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             18             102 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
              5               9 
$`CSMD1 MUTATED`
TCGA-A6-3808 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3977 
        9.14         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3892 
        4.01        20.98        38.07         1.02         0.99         1.02 
TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A026 
        1.02        20.94        12.00        70.03        10.98         1.94 

$`CSMD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.99         0.95         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01Y 
       23.01        17.03        15.91        13.02         1.02        63.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94        38.93        61.94        40.96        38.01        72.07 

  CSMD1 MUTATED CSMD1 WILD-TYPE 
           0.99            0.92 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
          70.03           72.07 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
           1.48           12.87 
[1] "1.0 - 70.0 (1.5)"  "0.9 - 72.1 (12.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
[1] "hr=" "4.1"
D28V2, continuous
D28V3, binary
                 cls
clus                0   1
  CSMD1 MUTATED    17   9
  CSMD1 WILD-TYPE 137  59
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     17    9
  CSMD1 WILD-TYPE  137   59
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  COLON             17             137
  RECTUM             9              59
D28V4, binary
                 cls
clus                0   1
  CSMD1 MUTATED    11  15
  CSMD1 WILD-TYPE  96 102
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     11   15
  CSMD1 WILD-TYPE   96  102
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  FEMALE            11              96
  MALE              15             102
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CSMD1 MUTATED                     13                             3
  CSMD1 WILD-TYPE                  115                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CSMD1 MUTATED                       8                              1
  CSMD1 WILD-TYPE                    49                              7
D28V5, multiclass
                                clus
vv                               CSMD1 MUTATED CSMD1 WILD-TYPE
  COLON ADENOCARCINOMA                      13             115
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      8              49
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  CSMD1 MUTATED     1   4  17   4
  CSMD1 WILD-TYPE   8  43 133  13
D28V6, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  T1             1               8
  T2             4              43
  T3            17             133
  T4             4              13
                 vv
clus               N0  N1  N2
  CSMD1 MUTATED    19   4   3
  CSMD1 WILD-TYPE 115  40  43
D28V7, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  N0            19             115
  N1             4              40
  N2             3              43
                 vv
clus               M0  M1 M1A
  CSMD1 MUTATED    22   3   0
  CSMD1 WILD-TYPE 167  28   1
D28V8, multiclass
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  M0             22             167
  M1              3              28
  M1A             0               1
                 vv
clus               I II III IV
  CSMD1 MUTATED    4 14   4  3
  CSMD1 WILD-TYPE 44 68  56 26
D28V9, multiclass
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  I               4              44
  II             14              68
  III             4              56
  IV              3              26
                 vv
clus               R0  R1  R2  RX
  CSMD1 MUTATED    21   1   3   0
  CSMD1 WILD-TYPE 167   1  24   1
D28V10, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  R0            21             167
  R1             1               1
  R2             3              24
  RX             0               1
D28V11, continuous

Clustering(29) Variable = LIFR MUTATION ANALYSIS
D29V1, survival
                sevent
clus2             0  1
  LIFR MUTATED    7  3
  LIFR WILD-TYPE 99 11
  LIFR MUTATED LIFR WILD-TYPE 
            10            110 
  LIFR MUTATED LIFR WILD-TYPE 
             3             11 
$`LIFR MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
        1.02         0.99         1.02         1.02        18.02         4.01 
TCGA-AA-A010 TCGA-AF-3913 TCGA-AG-A002 TCGA-AG-A011 
       20.98        10.39        20.94        17.03 

$`LIFR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 
       15.85        10.62        13.55        12.72         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  LIFR MUTATED LIFR WILD-TYPE 
          0.99           0.92 
  LIFR MUTATED LIFR WILD-TYPE 
         20.98          72.07 
  LIFR MUTATED LIFR WILD-TYPE 
          7.20          11.49 
[1] "1.0 - 21.0 (7.2)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
[1] "hr=" "3.9"
D29V2, continuous
D29V3, binary
                cls
clus               0   1
  LIFR MUTATED    13   5
  LIFR WILD-TYPE 141  63
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     13    5
  LIFR WILD-TYPE  141   63
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  COLON            13            141
  RECTUM            5             63
D29V4, binary
                cls
clus               0   1
  LIFR MUTATED     6  12
  LIFR WILD-TYPE 101 105
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED      6   12
  LIFR WILD-TYPE  101  105
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  FEMALE            6            101
  MALE             12            105
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LIFR MUTATED                     10                             3
  LIFR WILD-TYPE                  118                            21
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LIFR MUTATED                       5                              0
  LIFR WILD-TYPE                    52                              8
D29V5, multiclass
                                clus
vv                               LIFR MUTATED LIFR WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  LIFR MUTATED     1   4  10   3
  LIFR WILD-TYPE   8  43 140  14
D29V6, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  T1            1              8
  T2            4             43
  T3           10            140
  T4            3             14
                vv
clus              N0  N1  N2
  LIFR MUTATED    11   4   3
  LIFR WILD-TYPE 123  40  43
D29V7, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  N0           11            123
  N1            4             40
  N2            3             43
                vv
clus              M0  M1 M1A
  LIFR MUTATED    14   2   0
  LIFR WILD-TYPE 175  29   1
D29V8, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  M0            14            175
  M1             2             29
  M1A            0              1
                vv
clus              I II III IV
  LIFR MUTATED    3  6   5  1
  LIFR WILD-TYPE 45 76  55 28
D29V9, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  I              3             45
  II             6             76
  III            5             55
  IV             1             28
                vv
clus              R0  R1  R2  RX
  LIFR MUTATED    15   0   2   0
  LIFR WILD-TYPE 173   2  25   1
D29V10, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  R0           15            173
  R1            0              2
  R2            2             25
  RX            0              1
D29V11, continuous

Clustering(30) Variable = OR6N1 MUTATION ANALYSIS
D30V1, survival
                 sevent
clus2               0   1
  OR6N1 MUTATED     6   1
  OR6N1 WILD-TYPE 100  13
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              7             113 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              1              13 
$`OR6N1 MUTATED`
TCGA-AA-3710 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A01P TCGA-AA-A01V 
        1.02         0.99         1.02        30.02        38.07        35.01 
TCGA-AG-A002 
       20.94 

$`OR6N1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02         1.02        35.01         1.02        33.04        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  OR6N1 MUTATED OR6N1 WILD-TYPE 
           0.99            0.92 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          38.07           72.07 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          20.94           10.92 
[1] "1.0 - 38.1 (20.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
                 cls
clus                0   1
  OR6N1 MUTATED     8   2
  OR6N1 WILD-TYPE 146  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      8    2
  OR6N1 WILD-TYPE  146   66
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D30V4, binary
                 cls
clus                0   1
  OR6N1 MUTATED     4   6
  OR6N1 WILD-TYPE 103 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      4    6
  OR6N1 WILD-TYPE  103  111
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  FEMALE             4             103
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR6N1 MUTATED                      7                             1
  OR6N1 WILD-TYPE                  121                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR6N1 MUTATED                       2                              0
  OR6N1 WILD-TYPE                    55                              8
D30V5, multiclass
                                clus
vv                               OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  OR6N1 MUTATED     0   3   6   1
  OR6N1 WILD-TYPE   9  44 144  16
D30V6, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             1              16
                 vv
clus               N0  N1  N2
  OR6N1 MUTATED     6   3   1
  OR6N1 WILD-TYPE 128  41  45
D30V7, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  N0             6             128
  N1             3              41
  N2             1              45
                 vv
clus               M0  M1 M1A
  OR6N1 MUTATED     8   1   0
  OR6N1 WILD-TYPE 181  30   1
D30V8, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  OR6N1 MUTATED    2  3   3  1
  OR6N1 WILD-TYPE 46 79  57 28
D30V9, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  I               2              46
  II              3              79
  III             3              57
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  OR6N1 MUTATED     7   0   2   0
  OR6N1 WILD-TYPE 181   2  25   1
D30V10, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             2              25
  RX             0               1
D30V11, continuous

Clustering(31) Variable = CCDC160 MUTATION ANALYSIS
D31V1, survival
                   sevent
clus2                 0   1
  CCDC160 MUTATED     3   0
  CCDC160 WILD-TYPE 103  14
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                3               117 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                0                14 
$`CCDC160 MUTATED`
TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       20.98         1.02        20.94 

$`CCDC160 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CCDC160 MUTATED CCDC160 WILD-TYPE 
             1.02              0.92 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98             72.07 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.94             10.92 
[1] "1.0 - 21.0 (20.9)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"CCDC160 WILD-TYPE"   "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D31V2, continuous
D31V3, binary
                   cls
clus                  0   1
  CCDC160 MUTATED     5   2
  CCDC160 WILD-TYPE 149  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    2
  CCDC160 WILD-TYPE  149   66
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D31V4, binary
                   cls
clus                  0   1
  CCDC160 MUTATED     5   2
  CCDC160 WILD-TYPE 102 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    2
  CCDC160 WILD-TYPE  102  115
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  FEMALE               5               102
  MALE                 2               115
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CCDC160 MUTATED                      5                             0
  CCDC160 WILD-TYPE                  123                            24
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CCDC160 MUTATED                       2                              0
  CCDC160 WILD-TYPE                    55                              8
D31V5, multiclass
                                clus
vv                               CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  CCDC160 MUTATED     1   1   3   2
  CCDC160 WILD-TYPE   8  46 147  15
D31V6, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               3               147
  T4               2                15
                   vv
clus                 N0  N1  N2
  CCDC160 MUTATED     5   2   0
  CCDC160 WILD-TYPE 129  42  46
D31V7, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  N0               5               129
  N1               2                42
  N2               0                46
                   vv
clus                 M0  M1 M1A
  CCDC160 MUTATED     6   1   0
  CCDC160 WILD-TYPE 183  30   1
D31V8, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  M0                6               183
  M1                1                30
  M1A               0                 1
                   vv
clus                 I II III IV
  CCDC160 MUTATED    2  3   1  1
  CCDC160 WILD-TYPE 46 79  59 28
D31V9, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  I                 2                46
  II                3                79
  III               1                59
  IV                1                28
                   vv
clus                 R0  R1  R2  RX
  CCDC160 MUTATED     6   0   1   0
  CCDC160 WILD-TYPE 182   2  26   1
D31V10, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  R0               6               182
  R1               0                 2
  R2               1                26
  RX               0                 1
D31V11, continuous

Clustering(32) Variable = CNTN6 MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2              0  1
  CNTN6 MUTATED   10  2
  CNTN6 WILD-TYPE 96 12
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             12             108 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
              2              12 
$`CNTN6 MUTATED`
TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 
        0.99         0.99         0.99         4.01         0.99        20.98 
TCGA-AA-A017 TCGA-AA-A01S TCGA-AA-A03J TCGA-AY-4070 TCGA-AG-3581 TCGA-AG-A002 
       15.02         1.02        40.93        16.31         1.02        20.94 

$`CNTN6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D 
       27.02        27.02        17.00        14.99        21.99         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       39.95        18.02         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72        10.39         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CNTN6 MUTATED CNTN6 WILD-TYPE 
           0.99            0.92 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          40.93           72.07 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 40.9 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
[1] "hr=" "1.8"
D32V2, continuous
D32V3, binary
                 cls
clus                0   1
  CNTN6 MUTATED    15   2
  CNTN6 WILD-TYPE 139  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     15    2
  CNTN6 WILD-TYPE  139   66
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D32V4, binary
                 cls
clus                0   1
  CNTN6 MUTATED    11   6
  CNTN6 WILD-TYPE  96 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     11    6
  CNTN6 WILD-TYPE   96  111
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  FEMALE            11              96
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CNTN6 MUTATED                     12                             3
  CNTN6 WILD-TYPE                  116                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CNTN6 MUTATED                       2                              0
  CNTN6 WILD-TYPE                    55                              8
D32V5, multiclass
                                clus
vv                               CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CNTN6 MUTATED     1   5   8   3
  CNTN6 WILD-TYPE   8  42 142  14
D32V6, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             8             142
  T4             3              14
                 vv
clus               N0  N1  N2
  CNTN6 MUTATED    14   2   1
  CNTN6 WILD-TYPE 120  42  45
D32V7, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  N0            14             120
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  CNTN6 MUTATED    17   0   0
  CNTN6 WILD-TYPE 172  31   1
D32V8, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  M0             17             172
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  CNTN6 MUTATED    6  8   3  0
  CNTN6 WILD-TYPE 42 74  57 29
D32V9, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  I               6              42
  II              8              74
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  CNTN6 MUTATED    15   1   0   0
  CNTN6 WILD-TYPE 173   1  27   1
D32V10, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  R0            15             173
  R1             1               1
  R2             0              27
  RX             0               1
D32V11, continuous

Clustering(33) Variable = CPXCR1 MUTATION ANALYSIS
D33V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    9  0
  CPXCR1 WILD-TYPE 97 14
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               9              111 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               0               14 
$`CPXCR1 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3842 TCGA-AA-A010 TCGA-AA-A01T TCGA-AA-A01X 
       16.54         0.99         1.02        20.98        33.04        26.01 
TCGA-AG-3892 TCGA-AG-A008 TCGA-AG-A02N 
        1.02        13.91        61.94 

$`CPXCR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        20.94         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            0.99             0.92 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           61.94            72.07 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           16.54            10.62 
[1] "1.0 - 61.9 (16.5)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D33V2, continuous
D33V3, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     6   3
  CPXCR1 WILD-TYPE 148  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      6    3
  CPXCR1 WILD-TYPE  148   65
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON               6              148
  RECTUM              3               65
D33V4, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     7   2
  CPXCR1 WILD-TYPE 100 115
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      7    2
  CPXCR1 WILD-TYPE  100  115
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              7              100
  MALE                2              115
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CPXCR1 MUTATED                      5                             1
  CPXCR1 WILD-TYPE                  123                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CPXCR1 MUTATED                       2                              1
  CPXCR1 WILD-TYPE                    55                              7
D33V5, multiclass
                                clus
vv                               CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
                  vv
clus                T1  T2  T3  T4
  CPXCR1 MUTATED     1   3   4   1
  CPXCR1 WILD-TYPE   8  44 146  16
D33V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              4              146
  T4              1               16
                  vv
clus                N0  N1  N2
  CPXCR1 MUTATED     5   4   0
  CPXCR1 WILD-TYPE 129  40  46
D33V7, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              5              129
  N1              4               40
  N2              0               46
                  vv
clus                M0  M1 M1A
  CPXCR1 MUTATED     9   0   0
  CPXCR1 WILD-TYPE 180  31   1
D33V8, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  CPXCR1 MUTATED    2  3   4  0
  CPXCR1 WILD-TYPE 46 79  56 29
D33V9, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                2               46
  II               3               79
  III              4               56
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  CPXCR1 MUTATED     8   0   0   1
  CPXCR1 WILD-TYPE 180   2  27   0
D33V10, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  R0              8              180
  R1              0                2
  R2              0               27
  RX              1                0
D33V11, continuous

Clustering(34) Variable = SLITRK1 MUTATION ANALYSIS
D34V1, survival
                   sevent
clus2                0  1
  SLITRK1 MUTATED   10  1
  SLITRK1 WILD-TYPE 96 13
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               11               109 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
                1                13 
$`SLITRK1 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A010 
        0.99         0.99         1.02         0.99         1.02        20.98 
TCGA-AG-3727 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        0.95        20.94        23.01        17.03        15.91 

$`SLITRK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
             0.95              0.92 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
            23.01             72.07 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
             1.02             10.98 
[1] "0.9 - 23.0 (1.0)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
  "SLITRK1 MUTATED"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
[1] "hr=" "1.1"
D34V2, continuous
D34V3, binary
                   cls
clus                  0   1
  SLITRK1 MUTATED    10   5
  SLITRK1 WILD-TYPE 144  63
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED     10    5
  SLITRK1 WILD-TYPE  144   63
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  COLON               10               144
  RECTUM               5                63
D34V4, binary
                   cls
clus                  0   1
  SLITRK1 MUTATED     4  11
  SLITRK1 WILD-TYPE 103 106
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED      4   11
  SLITRK1 WILD-TYPE  103  106
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  FEMALE               4               103
  MALE                11               106
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SLITRK1 MUTATED                      8                             2
  SLITRK1 WILD-TYPE                  120                            22
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SLITRK1 MUTATED                       5                              0
  SLITRK1 WILD-TYPE                    52                              8
D34V5, multiclass
                                clus
vv                               SLITRK1 MUTATED SLITRK1 WILD-TYPE
  COLON ADENOCARCINOMA                         8               120
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        5                52
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  SLITRK1 MUTATED     0   7   6   2
  SLITRK1 WILD-TYPE   9  40 144  15
D34V6, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  T1               0                 9
  T2               7                40
  T3               6               144
  T4               2                15
                   vv
clus                 N0  N1  N2
  SLITRK1 MUTATED    12   2   1
  SLITRK1 WILD-TYPE 122  42  45
D34V7, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  N0              12               122
  N1               2                42
  N2               1                45
                   vv
clus                 M0  M1 M1A
  SLITRK1 MUTATED    14   0   0
  SLITRK1 WILD-TYPE 175  31   1
D34V8, multiclass
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  M0               14               175
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  SLITRK1 MUTATED    5  6   3  0
  SLITRK1 WILD-TYPE 43 76  57 29
D34V9, multiclass
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  I                 5                43
  II                6                76
  III               3                57
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  SLITRK1 MUTATED    14   0   0   0
  SLITRK1 WILD-TYPE 174   2  27   1
D34V10, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  R0              14               174
  R1               0                 2
  R2               0                27
  RX               0                 1
D34V11, continuous

Clustering(35) Variable = CDH2 MUTATION ANALYSIS
D35V1, survival
                sevent
clus2             0  1
  CDH2 MUTATED   11  1
  CDH2 WILD-TYPE 95 13
  CDH2 MUTATED CDH2 WILD-TYPE 
            12            108 
  CDH2 MUTATED CDH2 WILD-TYPE 
             1             13 
$`CDH2 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E 
        9.14         1.02         1.02         0.99         1.02        30.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A029 TCGA-AG-A002 TCGA-AG-A02N 
        4.01        20.98         1.02        51.95        20.94        61.94 

$`CDH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F 
       33.04        35.01        26.01        20.98        39.06        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  CDH2 MUTATED CDH2 WILD-TYPE 
          0.99           0.92 
  CDH2 MUTATED CDH2 WILD-TYPE 
         61.94          72.07 
  CDH2 MUTATED CDH2 WILD-TYPE 
         6.575         11.490 
[1] "1.0 - 61.9 (6.6)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
[1] "hr=" "1.7"
D35V2, continuous
D35V3, binary
                cls
clus               0   1
  CDH2 MUTATED    12   4
  CDH2 WILD-TYPE 142  64
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED     12    4
  CDH2 WILD-TYPE  142   64
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  COLON            12            142
  RECTUM            4             64
D35V4, binary
                cls
clus               0   1
  CDH2 MUTATED     6  10
  CDH2 WILD-TYPE 101 107
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED      6   10
  CDH2 WILD-TYPE  101  107
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  FEMALE            6            101
  MALE             10            107
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CDH2 MUTATED                      9                             3
  CDH2 WILD-TYPE                  119                            21
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CDH2 MUTATED                       4                              0
  CDH2 WILD-TYPE                    53                              8
D35V5, multiclass
                                clus
vv                               CDH2 MUTATED CDH2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  CDH2 MUTATED     0   2  11   3
  CDH2 WILD-TYPE   9  45 139  14
D35V6, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           11            139
  T4            3             14
                vv
clus              N0  N1  N2
  CDH2 MUTATED    14   2   0
  CDH2 WILD-TYPE 120  42  46
D35V7, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  N0           14            120
  N1            2             42
  N2            0             46
                vv
clus              M0  M1 M1A
  CDH2 MUTATED    14   0   1
  CDH2 WILD-TYPE 175  31   0
D35V8, multiclass
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  M0            14            175
  M1             0             31
  M1A            1              0
                vv
clus              I II III IV
  CDH2 MUTATED    1 12   1  1
  CDH2 WILD-TYPE 47 70  59 28
D35V9, multiclass
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  I              1             47
  II            12             70
  III            1             59
  IV             1             28
                vv
clus              R0  R1  R2  RX
  CDH2 MUTATED    15   0   0   0
  CDH2 WILD-TYPE 173   2  27   1
D35V10, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  R0           15            173
  R1            0              2
  R2            0             27
  RX            0              1
D35V11, continuous

Clustering(36) Variable = CNBD1 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2               0   1
  CNBD1 MUTATED     4   0
  CNBD1 WILD-TYPE 102  14
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              4             116 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              0              14 
$`CNBD1 MUTATED`
TCGA-AA-3710 TCGA-AA-3939 TCGA-AA-A010 TCGA-AG-A032 
        1.02         0.99        20.98        38.01 

$`CNBD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           0.99            0.92 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          38.01           72.07 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          11.00           10.95 
[1] "1.0 - 38.0 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D36V2, continuous
D36V3, binary
                 cls
clus                0   1
  CNBD1 MUTATED     6   1
  CNBD1 WILD-TYPE 148  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      6    1
  CNBD1 WILD-TYPE  148   67
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON              6             148
  RECTUM             1              67
D36V4, binary
                 cls
clus                0   1
  CNBD1 MUTATED     4   3
  CNBD1 WILD-TYPE 103 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      4    3
  CNBD1 WILD-TYPE  103  114
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             4             103
  MALE               3             114
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CNBD1 MUTATED                      5                             1
  CNBD1 WILD-TYPE                  123                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CNBD1 MUTATED                       1                              0
  CNBD1 WILD-TYPE                    56                              8
D36V5, multiclass
                                clus
vv                               CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CNBD1 MUTATED     0   1   5   1
  CNBD1 WILD-TYPE   9  46 145  16
D36V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             5             145
  T4             1              16
                 vv
clus               N0  N1  N2
  CNBD1 MUTATED     6   1   0
  CNBD1 WILD-TYPE 128  43  46
D36V7, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  CNBD1 MUTATED     7   0   0
  CNBD1 WILD-TYPE 182  31   1
D36V8, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  CNBD1 MUTATED    1  5   1  0
  CNBD1 WILD-TYPE 47 77  59 29
D36V9, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               1              47
  II              5              77
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  CNBD1 MUTATED     7   0   0   0
  CNBD1 WILD-TYPE 181   2  27   1
D36V10, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             0              27
  RX             0               1
D36V11, continuous

Clustering(37) Variable = CTNNB1 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2                0   1
  CTNNB1 MUTATED     5   1
  CTNNB1 WILD-TYPE 101  13
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               6              114 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               1               13 
$`CTNNB1 MUTATED`
TCGA-A6-2678 TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A01K TCGA-AG-3892 TCGA-AG-A020 
       14.37         4.01        17.00        13.02         1.02        10.98 

$`CTNNB1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W 
       18.02        17.00        27.02        27.02         0.99        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 
       13.02         1.02        12.00        70.03        63.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
            1.02             0.92 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           17.00            72.07 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           12.00            10.77 
[1] "1.0 - 17.0 (12.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
[1] "hr=" "1.8"
D37V2, continuous
D37V3, binary
                  cls
clus                 0   1
  CTNNB1 MUTATED     7   4
  CTNNB1 WILD-TYPE 147  64
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      7    4
  CTNNB1 WILD-TYPE  147   64
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON               7              147
  RECTUM              4               64
D37V4, binary
                  cls
clus                 0   1
  CTNNB1 MUTATED     7   4
  CTNNB1 WILD-TYPE 100 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      7    4
  CTNNB1 WILD-TYPE  100  113
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  FEMALE              7              100
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CTNNB1 MUTATED                      6                             1
  CTNNB1 WILD-TYPE                  122                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CTNNB1 MUTATED                       2                              1
  CTNNB1 WILD-TYPE                    55                              7
D37V5, multiclass
                                clus
vv                               CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
                  vv
clus                T1  T2  T3  T4
  CTNNB1 MUTATED     1   0   9   1
  CTNNB1 WILD-TYPE   8  47 141  16
D37V6, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  T1              1                8
  T2              0               47
  T3              9              141
  T4              1               16
                  vv
clus                N0  N1  N2
  CTNNB1 MUTATED     6   4   1
  CTNNB1 WILD-TYPE 128  40  45
D37V7, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  N0              6              128
  N1              4               40
  N2              1               45
                  vv
clus                M0  M1 M1A
  CTNNB1 MUTATED    10   1   0
  CTNNB1 WILD-TYPE 179  30   1
D37V8, multiclass
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  M0              10              179
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  CTNNB1 MUTATED    1  5   4  1
  CTNNB1 WILD-TYPE 47 77  56 28
D37V9, multiclass
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  I                1               47
  II               5               77
  III              4               56
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  CTNNB1 MUTATED     9   0   1   0
  CTNNB1 WILD-TYPE 179   2  26   1
D37V10, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  R0              9              179
  R1              0                2
  R2              1               26
  RX              0                1
D37V11, continuous

Clustering(38) Variable = DKK2 MUTATION ANALYSIS
D38V1, survival
                sevent
clus2              0   1
  DKK2 MUTATED     3   0
  DKK2 WILD-TYPE 103  14
  DKK2 MUTATED DKK2 WILD-TYPE 
             3            117 
  DKK2 MUTATED DKK2 WILD-TYPE 
             0             14 
$`DKK2 MUTATED`
TCGA-A6-2676 TCGA-AA-3715 TCGA-AG-3582 
       14.70         0.99         1.02 

$`DKK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 
       10.62        13.55        12.72        10.39         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  DKK2 MUTATED DKK2 WILD-TYPE 
          0.99           0.92 
  DKK2 MUTATED DKK2 WILD-TYPE 
         14.70          72.07 
  DKK2 MUTATED DKK2 WILD-TYPE 
          1.02          10.98 
[1] "1.0 - 14.7 (1.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK2 WILD-TYPE"   "DKK2 MUTATED" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" "DKK2 WILD-TYPE" 
[1] "hr="     "9200000"
D38V2, continuous
D38V3, binary
                cls
clus               0   1
  DKK2 MUTATED     5   1
  DKK2 WILD-TYPE 149  67
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      5    1
  DKK2 WILD-TYPE  149   67
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D38V4, binary
                cls
clus               0   1
  DKK2 MUTATED     3   3
  DKK2 WILD-TYPE 104 114
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK2 MUTATED      3    3
  DKK2 WILD-TYPE  104  114
        clus
vv       DKK2 MUTATED DKK2 WILD-TYPE
  FEMALE            3            104
  MALE              3            114
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DKK2 MUTATED                      4                             1
  DKK2 WILD-TYPE                  124                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DKK2 MUTATED                       1                              0
  DKK2 WILD-TYPE                    56                              8
D38V5, multiclass
                                clus
vv                               DKK2 MUTATED DKK2 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  DKK2 MUTATED     0   0   5   0
  DKK2 WILD-TYPE   9  47 145  17
D38V6, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            5            145
  T4            0             17
                vv
clus              N0  N1  N2
  DKK2 MUTATED     3   3   0
  DKK2 WILD-TYPE 131  41  46
D38V7, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  N0            3            131
  N1            3             41
  N2            0             46
                vv
clus              M0  M1 M1A
  DKK2 MUTATED     5   1   0
  DKK2 WILD-TYPE 184  30   1
D38V8, multiclass
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  DKK2 MUTATED    0  3   2  1
  DKK2 WILD-TYPE 48 79  58 28
D38V9, multiclass
     clus
vv    DKK2 MUTATED DKK2 WILD-TYPE
  I              0             48
  II             3             79
  III            2             58
  IV             1             28
                vv
clus              R0  R1  R2  RX
  DKK2 MUTATED     5   0   1   0
  DKK2 WILD-TYPE 183   2  26   1
D38V10, multiclass
    clus
vv   DKK2 MUTATED DKK2 WILD-TYPE
  R0            5            183
  R1            0              2
  R2            1             26
  RX            0              1
D38V11, continuous

Clustering(39) Variable = ERBB4 MUTATION ANALYSIS
D39V1, survival
                 sevent
clus2              0  1
  ERBB4 MUTATED    9  3
  ERBB4 WILD-TYPE 97 11
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             12             108 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
              3              11 
$`ERBB4 MUTATED`
TCGA-A6-2672 TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
       16.54         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AY-4071 TCGA-AG-3581 TCGA-AG-3599 TCGA-AG-A002 TCGA-AG-A02N 
        1.02         0.95         1.02         0.99        20.94        61.94 

$`ERBB4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 
       40.96        39.95        18.02        40.93        16.31        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3583 
       10.62        13.55        12.72        10.39         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  ERBB4 MUTATED ERBB4 WILD-TYPE 
           0.95            0.92 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
          61.94           72.07 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
           1.02           12.00 
[1] "0.9 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
[1] "hr=" "3.1"
D39V2, continuous
D39V3, binary
                 cls
clus                0   1
  ERBB4 MUTATED    13   4
  ERBB4 WILD-TYPE 141  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     13    4
  ERBB4 WILD-TYPE  141   64
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON             13             141
  RECTUM             4              64
D39V4, binary
                 cls
clus                0   1
  ERBB4 MUTATED    10   8
  ERBB4 WILD-TYPE  97 109
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     10    8
  ERBB4 WILD-TYPE   97  109
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  FEMALE            10              97
  MALE               8             109
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ERBB4 MUTATED                     10                             3
  ERBB4 WILD-TYPE                  118                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ERBB4 MUTATED                       3                              0
  ERBB4 WILD-TYPE                    54                              8
D39V5, multiclass
                                clus
vv                               ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ERBB4 MUTATED     2   4   9   3
  ERBB4 WILD-TYPE   7  43 141  14
D39V6, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  T1             2               7
  T2             4              43
  T3             9             141
  T4             3              14
                 vv
clus               N0  N1  N2
  ERBB4 MUTATED    16   2   0
  ERBB4 WILD-TYPE 118  42  46
D39V7, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             0              46
                 vv
clus               M0  M1 M1A
  ERBB4 MUTATED    17   0   0
  ERBB4 WILD-TYPE 172  31   1
D39V8, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  M0             17             172
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  ERBB4 MUTATED    6 10   2  0
  ERBB4 WILD-TYPE 42 72  58 29
D39V9, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  I               6              42
  II             10              72
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  ERBB4 MUTATED    16   0   0   0
  ERBB4 WILD-TYPE 172   2  27   1
D39V10, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  R0            16             172
  R1             0               2
  R2             0              27
  RX             0               1
D39V11, continuous

Clustering(40) Variable = FLG MUTATION ANALYSIS
D40V1, survival
               sevent
clus2            0  1
  FLG MUTATED   16  4
  FLG WILD-TYPE 90 10
  FLG MUTATED FLG WILD-TYPE 
           20           100 
  FLG MUTATED FLG WILD-TYPE 
            4            10 
$`FLG MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3952 
        9.14         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A01V 
        1.02         4.01         0.99        20.98        35.01        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AY-4071 TCGA-AG-3582 TCGA-AG-A002 
       20.98        39.06        51.95         0.95         1.02        20.94 
TCGA-AG-A011 TCGA-AG-A01L 
       17.03        12.00 

$`FLG WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02        38.07         1.02         1.02        33.04        26.01 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       18.02        40.93        16.31        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       12.72        10.39         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        15.91        13.02         1.02 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  FLG MUTATED FLG WILD-TYPE 
         0.95          0.92 
  FLG MUTATED FLG WILD-TYPE 
        51.95         72.07 
  FLG MUTATED FLG WILD-TYPE 
        6.575        11.490 
[1] "0.9 - 52.0 (6.6)"  "0.9 - 72.1 (11.5)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
[1] "hr=" "2"  
D40V2, continuous
D40V3, binary
               cls
clus              0   1
  FLG MUTATED    25   6
  FLG WILD-TYPE 129  62
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     25    6
  FLG WILD-TYPE  129   62
        clus
vv       FLG MUTATED FLG WILD-TYPE
  COLON           25           129
  RECTUM           6            62
D40V4, binary
               cls
clus              0   1
  FLG MUTATED    15  17
  FLG WILD-TYPE  92 100
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     15   17
  FLG WILD-TYPE   92  100
        clus
vv       FLG MUTATED FLG WILD-TYPE
  FEMALE          15            92
  MALE            17           100
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FLG MUTATED                     16                             8
  FLG WILD-TYPE                  112                            16
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FLG MUTATED                       5                              0
  FLG WILD-TYPE                    52                              8
D40V5, multiclass
                                clus
vv                               FLG MUTATED FLG WILD-TYPE
  COLON ADENOCARCINOMA                    16           112
  COLON MUCINOUS ADENOCARCINOMA            8            16
  RECTAL ADENOCARCINOMA                    5            52
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
               vv
clus             T1  T2  T3  T4
  FLG MUTATED     2   7  19   4
  FLG WILD-TYPE   7  40 131  13
D40V6, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  T1           2             7
  T2           7            40
  T3          19           131
  T4           4            13
               vv
clus             N0  N1  N2
  FLG MUTATED    24   4   4
  FLG WILD-TYPE 110  40  42
D40V7, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  N0          24           110
  N1           4            40
  N2           4            42
               vv
clus             M0  M1 M1A
  FLG MUTATED    28   2   0
  FLG WILD-TYPE 161  29   1
D40V8, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  M0           28           161
  M1            2            29
  M1A           0             1
               vv
clus             I II III IV
  FLG MUTATED    8 15   6  2
  FLG WILD-TYPE 40 67  54 27
D40V9, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  I             8            40
  II           15            67
  III           6            54
  IV            2            27
               vv
clus             R0  R1  R2  RX
  FLG MUTATED    27   0   1   0
  FLG WILD-TYPE 161   2  26   1
D40V10, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  R0          27           161
  R1           0             2
  R2           1            26
  RX           0             1
D40V11, continuous

Clustering(41) Variable = ARID1A MUTATION ANALYSIS
D41V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED   14  0
  ARID1A WILD-TYPE 92 14
  ARID1A MUTATED ARID1A WILD-TYPE 
              14              106 
  ARID1A MUTATED ARID1A WILD-TYPE 
               0               14 
$`ARID1A MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00J 
       14.70         0.99         0.99        18.02        30.02        18.02 
TCGA-AA-A00L TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01R TCGA-AG-3878 TCGA-AG-3892 
       17.00        20.98        15.02        35.01         0.99         1.02 
TCGA-AG-A00H TCGA-AG-A025 
       25.94        49.94 

$`ARID1A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.99         1.02         0.95         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
        6.02        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        63.98        10.98         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ARID1A MUTATED ARID1A WILD-TYPE 
            0.99             0.92 
  ARID1A MUTATED ARID1A WILD-TYPE 
           49.94            72.07 
  ARID1A MUTATED ARID1A WILD-TYPE 
          17.510            9.765 
[1] "1.0 - 49.9 (17.5)" "0.9 - 72.1 (9.8)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
[1] "hr="     "8.4e+07"
D41V2, continuous
D41V3, binary
                  cls
clus                 0   1
  ARID1A MUTATED    16   5
  ARID1A WILD-TYPE 138  63
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     16    5
  ARID1A WILD-TYPE  138   63
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  COLON              16              138
  RECTUM              5               63
D41V4, binary
                  cls
clus                 0   1
  ARID1A MUTATED    12   9
  ARID1A WILD-TYPE  95 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     12    9
  ARID1A WILD-TYPE   95  108
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE             12               95
  MALE                9              108
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ARID1A MUTATED                     10                             6
  ARID1A WILD-TYPE                  118                            18
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ARID1A MUTATED                       5                              0
  ARID1A WILD-TYPE                    52                              8
D41V5, multiclass
                                clus
vv                               ARID1A MUTATED ARID1A WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ARID1A MUTATED     2   2  13   3
  ARID1A WILD-TYPE   7  45 137  14
D41V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              2                7
  T2              2               45
  T3             13              137
  T4              3               14
                  vv
clus                N0  N1  N2
  ARID1A MUTATED    17   1   3
  ARID1A WILD-TYPE 117  43  43
D41V7, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0             17              117
  N1              1               43
  N2              3               43
                  vv
clus                M0  M1 M1A
  ARID1A MUTATED    20   1   0
  ARID1A WILD-TYPE 169  30   1
D41V8, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  M0              20              169
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  ARID1A MUTATED    4 13   3  1
  ARID1A WILD-TYPE 44 69  57 28
D41V9, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  I                4               44
  II              13               69
  III              3               57
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  ARID1A MUTATED    19   0   1   0
  ARID1A WILD-TYPE 169   2  26   1
D41V10, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  R0             19              169
  R1              0                2
  R2              1               26
  RX              0                1
D41V11, continuous

Clustering(42) Variable = KIAA1486 MUTATION ANALYSIS
D42V1, survival
                    sevent
clus2                 0  1
  KIAA1486 MUTATED    8  2
  KIAA1486 WILD-TYPE 98 12
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                10                110 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 2                 12 
$`KIAA1486 MUTATED`
TCGA-AA-3848 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02O 
        0.99         1.02         4.01        20.98        35.01         0.92 
TCGA-AY-4070 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
       16.31         1.02         0.99        20.94 

$`KIAA1486 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
        5.03        40.96        39.95        18.02        40.93         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.92         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
              0.92               0.92 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
             35.01              72.07 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
             2.515             11.490 
[1] "0.9 - 35.0 (2.5)"  "0.9 - 72.1 (11.5)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
[1] "hr=" "2.7"
D42V2, continuous
D42V3, binary
                    cls
clus                   0   1
  KIAA1486 MUTATED     9   4
  KIAA1486 WILD-TYPE 145  64
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      9    4
  KIAA1486 WILD-TYPE  145   64
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON                 9                145
  RECTUM                4                 64
D42V4, binary
                    cls
clus                   0   1
  KIAA1486 MUTATED     6   7
  KIAA1486 WILD-TYPE 101 110
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      6    7
  KIAA1486 WILD-TYPE  101  110
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  FEMALE                6                101
  MALE                  7                110
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  KIAA1486 MUTATED                      6                             3
  KIAA1486 WILD-TYPE                  122                            21
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  KIAA1486 MUTATED                       4                              0
  KIAA1486 WILD-TYPE                    53                              8
D42V5, multiclass
                                clus
vv                               KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON ADENOCARCINOMA                          6                122
  COLON MUCINOUS ADENOCARCINOMA                 3                 21
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  KIAA1486 MUTATED     1   2   8   2
  KIAA1486 WILD-TYPE   8  45 142  15
D42V6, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  T1                1                  8
  T2                2                 45
  T3                8                142
  T4                2                 15
                    vv
clus                  N0  N1  N2
  KIAA1486 MUTATED     8   2   3
  KIAA1486 WILD-TYPE 126  42  43
D42V7, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  N0                8                126
  N1                2                 42
  N2                3                 43
                    vv
clus                  M0  M1 M1A
  KIAA1486 MUTATED    13   0   0
  KIAA1486 WILD-TYPE 176  31   1
D42V8, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  M0                13                176
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  KIAA1486 MUTATED    3  5   5  0
  KIAA1486 WILD-TYPE 45 77  55 29
D42V9, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  I                  3                 45
  II                 5                 77
  III                5                 55
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  KIAA1486 MUTATED    11   1   0   0
  KIAA1486 WILD-TYPE 177   1  27   1
D42V10, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  R0               11                177
  R1                1                  1
  R2                0                 27
  RX                0                  1
D42V11, continuous

Clustering(43) Variable = ROBO1 MUTATION ANALYSIS
D43V1, survival
                 sevent
clus2              0  1
  ROBO1 MUTATED   11  1
  ROBO1 WILD-TYPE 95 13
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             12             108 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
              1              13 
$`ROBO1 MUTATED`
TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-3947 TCGA-AA-3966 
       10.92         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02O TCGA-AG-3892 TCGA-AG-4007 TCGA-AG-A002 
        4.01        20.98         0.92         1.02         1.02        20.94 

$`ROBO1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ROBO1 MUTATED ROBO1 WILD-TYPE 
           0.92            0.92 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
          20.98           72.07 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
           1.02           12.36 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (12.4)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
[1] "hr=" "1.4"
D43V2, continuous
D43V3, binary
                 cls
clus                0   1
  ROBO1 MUTATED    14   4
  ROBO1 WILD-TYPE 140  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED     14    4
  ROBO1 WILD-TYPE  140   64
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON             14             140
  RECTUM             4              64
D43V4, binary
                 cls
clus                0   1
  ROBO1 MUTATED     7  11
  ROBO1 WILD-TYPE 100 106
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED      7   11
  ROBO1 WILD-TYPE  100  106
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  FEMALE             7             100
  MALE              11             106
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ROBO1 MUTATED                      7                             6
  ROBO1 WILD-TYPE                  121                            18
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ROBO1 MUTATED                       4                              0
  ROBO1 WILD-TYPE                    53                              8
D43V5, multiclass
                                clus
vv                               ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              6              18
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ROBO1 MUTATED     1   2  11   4
  ROBO1 WILD-TYPE   8  45 139  13
D43V6, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3            11             139
  T4             4              13
                 vv
clus               N0  N1  N2
  ROBO1 MUTATED    13   2   3
  ROBO1 WILD-TYPE 121  42  43
D43V7, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  N0            13             121
  N1             2              42
  N2             3              43
                 vv
clus               M0  M1 M1A
  ROBO1 MUTATED    16   2   0
  ROBO1 WILD-TYPE 173  29   1
D43V8, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  M0             16             173
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  ROBO1 MUTATED    2 11   3  2
  ROBO1 WILD-TYPE 46 71  57 27
D43V9, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  I               2              46
  II             11              71
  III             3              57
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  ROBO1 MUTATED    15   0   2   0
  ROBO1 WILD-TYPE 173   2  25   1
D43V10, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  R0            15             173
  R1             0               2
  R2             2              25
  RX             0               1
D43V11, continuous

Clustering(44) Variable = ZFHX4 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  ZFHX4 MUTATED   13  4
  ZFHX4 WILD-TYPE 93 10
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             103 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
              4              10 
$`ZFHX4 MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3848 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02H TCGA-AY-4071 TCGA-AG-3892 
        1.02         4.01        20.98         2.01         0.95         1.02 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A00H 
        0.99         1.02         1.02        20.94        25.94 

$`ZFHX4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 
        0.99         1.02         1.02         0.92         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-4007 
        1.02         0.95         0.99         0.92         0.99         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        1.02        13.91         6.02        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
           0.95            0.92 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
          25.94           72.07 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
           1.02           13.02 
[1] "0.9 - 25.9 (1.0)"  "0.9 - 72.1 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "ZFHX4 MUTATED"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
[1] "hr=" "6.2"
D44V2, continuous
D44V3, binary
                 cls
clus                0   1
  ZFHX4 MUTATED    16   7
  ZFHX4 WILD-TYPE 138  61
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     16    7
  ZFHX4 WILD-TYPE  138   61
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON             16             138
  RECTUM             7              61
D44V4, binary
                 cls
clus                0   1
  ZFHX4 MUTATED    14  10
  ZFHX4 WILD-TYPE  93 107
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     14   10
  ZFHX4 WILD-TYPE   93  107
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  FEMALE            14              93
  MALE              10             107
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZFHX4 MUTATED                     12                             4
  ZFHX4 WILD-TYPE                  116                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZFHX4 MUTATED                       7                              0
  ZFHX4 WILD-TYPE                    50                              8
D44V5, multiclass
                                clus
vv                               ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      7              50
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ZFHX4 MUTATED     3   4  13   4
  ZFHX4 WILD-TYPE   6  43 137  13
D44V6, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  T1             3               6
  T2             4              43
  T3            13             137
  T4             4              13
                 vv
clus               N0  N1  N2
  ZFHX4 MUTATED    19   2   3
  ZFHX4 WILD-TYPE 115  42  43
D44V7, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  N0            19             115
  N1             2              42
  N2             3              43
                 vv
clus               M0  M1 M1A
  ZFHX4 MUTATED    21   1   0
  ZFHX4 WILD-TYPE 168  30   1
D44V8, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  M0             21             168
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  ZFHX4 MUTATED    6 12   4  1
  ZFHX4 WILD-TYPE 42 70  56 28
D44V9, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  I               6              42
  II             12              70
  III             4              56
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  ZFHX4 MUTATED    21   0   1   0
  ZFHX4 WILD-TYPE 167   2  26   1
D44V10, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  R0            21             167
  R1             0               2
  R2             1              26
  RX             0               1
D44V11, continuous

Clustering(45) Variable = EPHA3 MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2               0   1
  EPHA3 MUTATED     6   0
  EPHA3 WILD-TYPE 100  14
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              6             114 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              0              14 
$`EPHA3 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00E TCGA-AA-A010 TCGA-AG-3892 
        0.99         0.99         1.02        30.02        20.98         1.02 

$`EPHA3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  EPHA3 MUTATED EPHA3 WILD-TYPE 
           0.99            0.92 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
          30.02           72.07 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
           1.02           11.49 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D45V2, continuous
D45V3, binary
                 cls
clus                0   1
  EPHA3 MUTATED    13   3
  EPHA3 WILD-TYPE 141  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     13    3
  EPHA3 WILD-TYPE  141   65
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON             13             141
  RECTUM             3              65
D45V4, binary
                 cls
clus                0   1
  EPHA3 MUTATED    10   6
  EPHA3 WILD-TYPE  97 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED     10    6
  EPHA3 WILD-TYPE   97  111
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  FEMALE            10              97
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  EPHA3 MUTATED                      9                             3
  EPHA3 WILD-TYPE                  119                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  EPHA3 MUTATED                       3                              0
  EPHA3 WILD-TYPE                    54                              8
D45V5, multiclass
                                clus
vv                               EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  EPHA3 MUTATED     1   1  12   2
  EPHA3 WILD-TYPE   8  46 138  15
D45V6, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  T1             1               8
  T2             1              46
  T3            12             138
  T4             2              15
                 vv
clus               N0  N1  N2
  EPHA3 MUTATED     9   2   5
  EPHA3 WILD-TYPE 125  42  41
D45V7, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             5              41
                 vv
clus               M0  M1 M1A
  EPHA3 MUTATED    14   2   0
  EPHA3 WILD-TYPE 175  29   1
D45V8, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  EPHA3 MUTATED    2  7   5  2
  EPHA3 WILD-TYPE 46 75  55 27
D45V9, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  I               2              46
  II              7              75
  III             5              55
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  EPHA3 MUTATED    12   0   2   0
  EPHA3 WILD-TYPE 176   2  25   1
D45V10, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             2              25
  RX             0               1
D45V11, continuous

Clustering(46) Variable = PRIM2 MUTATION ANALYSIS
D46V1, survival
                 sevent
clus2               0   1
  PRIM2 MUTATED     5   2
  PRIM2 WILD-TYPE 101  12
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              7             113 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              2              12 
$`PRIM2 MUTATED`
TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02J TCGA-AA-A02O TCGA-AG-A002 
        0.99         4.01        20.98         5.03         0.92        20.94 
TCGA-AG-A014 
       15.91 

$`PRIM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       39.95         2.01        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 
        6.02        25.94        23.01        17.03        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           0.92            0.92 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          20.98           72.07 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
           5.03           10.98 
[1] "0.9 - 21.0 (5.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
[1] "hr=" "3.6"
D46V2, continuous
D46V3, binary
                 cls
clus                0   1
  PRIM2 MUTATED     5   3
  PRIM2 WILD-TYPE 149  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      5    3
  PRIM2 WILD-TYPE  149   65
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D46V4, binary
                 cls
clus                0   1
  PRIM2 MUTATED     3   5
  PRIM2 WILD-TYPE 104 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      3    5
  PRIM2 WILD-TYPE  104  112
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             3             104
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PRIM2 MUTATED                      4                             1
  PRIM2 WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PRIM2 MUTATED                       3                              0
  PRIM2 WILD-TYPE                    54                              8
D46V5, multiclass
                                clus
vv                               PRIM2 MUTATED PRIM2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  PRIM2 MUTATED     0   3   3   2
  PRIM2 WILD-TYPE   9  44 147  15
D46V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             3             147
  T4             2              15
                 vv
clus               N0  N1  N2
  PRIM2 MUTATED     7   1   0
  PRIM2 WILD-TYPE 127  43  46
D46V7, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  PRIM2 MUTATED     7   1   0
  PRIM2 WILD-TYPE 182  30   1
D46V8, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  PRIM2 MUTATED    3  3   1  1
  PRIM2 WILD-TYPE 45 79  59 28
D46V9, multiclass
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  I               3              45
  II              3              79
  III             1              59
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  PRIM2 MUTATED     7   0   1   0
  PRIM2 WILD-TYPE 181   2  26   1
D46V10, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             1              26
  RX             0               1
D46V11, continuous

Clustering(47) Variable = UBE2NL MUTATION ANALYSIS
D47V1, survival
                  sevent
clus2                0   1
  UBE2NL MUTATED     6   0
  UBE2NL WILD-TYPE 100  14
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               6              114 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               0               14 
$`UBE2NL MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A017 TCGA-AG-A002 TCGA-AG-A032 
        0.99         1.02        20.98        15.02        20.94        38.01 

$`UBE2NL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A036 
       49.94         1.94        38.93        61.94        40.96        72.07 

  UBE2NL MUTATED UBE2NL WILD-TYPE 
            0.99             0.92 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
           38.01            72.07 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
           17.98            10.77 
[1] "1.0 - 38.0 (18.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
[1] "hr="     "2.7e+07"
D47V2, continuous
D47V3, binary
                  cls
clus                 0   1
  UBE2NL MUTATED     5   2
  UBE2NL WILD-TYPE 149  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      5    2
  UBE2NL WILD-TYPE  149   66
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D47V4, binary
                  cls
clus                 0   1
  UBE2NL MUTATED     4   3
  UBE2NL WILD-TYPE 103 114
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      4    3
  UBE2NL WILD-TYPE  103  114
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  FEMALE              4              103
  MALE                3              114
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  UBE2NL MUTATED                      4                             1
  UBE2NL WILD-TYPE                  124                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  UBE2NL MUTATED                       2                              0
  UBE2NL WILD-TYPE                    55                              8
D47V5, multiclass
                                clus
vv                               UBE2NL MUTATED UBE2NL WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  UBE2NL MUTATED     0   2   3   2
  UBE2NL WILD-TYPE   9  45 147  15
D47V6, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              2               15
                  vv
clus                N0  N1  N2
  UBE2NL MUTATED     5   2   0
  UBE2NL WILD-TYPE 129  42  46
D47V7, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  N0              5              129
  N1              2               42
  N2              0               46
                  vv
clus                M0  M1 M1A
  UBE2NL MUTATED     6   0   0
  UBE2NL WILD-TYPE 183  31   1
D47V8, multiclass
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  UBE2NL MUTATED    1  3   2  0
  UBE2NL WILD-TYPE 47 79  58 29
D47V9, multiclass
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  I                1               47
  II               3               79
  III              2               58
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  UBE2NL MUTATED     6   0   0   0
  UBE2NL WILD-TYPE 182   2  27   1
D47V10, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  R0              6              182
  R1              0                2
  R2              0               27
  RX              0                1
D47V11, continuous

Clustering(48) Variable = ACVR2A MUTATION ANALYSIS
D48V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    7  0
  ACVR2A WILD-TYPE 99 14
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               7              113 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               0               14 
$`ACVR2A MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A01V TCGA-AA-A02F 
       16.54         1.02         1.02        20.98        35.01        39.95 
TCGA-AG-A002 
       20.94 

$`ACVR2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        39.06        51.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            1.02             0.92 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           39.95            72.07 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           20.94            10.62 
[1] "1.0 - 40.0 (20.9)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
[1] "hr="     "7.5e+07"
D48V2, continuous
D48V3, binary
                  cls
clus                 0   1
  ACVR2A MUTATED     8   1
  ACVR2A WILD-TYPE 146  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      8    1
  ACVR2A WILD-TYPE  146   67
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D48V4, binary
                  cls
clus                 0   1
  ACVR2A MUTATED     7   2
  ACVR2A WILD-TYPE 100 115
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      7    2
  ACVR2A WILD-TYPE  100  115
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              7              100
  MALE                2              115
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ACVR2A MUTATED                      7                             1
  ACVR2A WILD-TYPE                  121                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ACVR2A MUTATED                       1                              0
  ACVR2A WILD-TYPE                    56                              8
D48V5, multiclass
                                clus
vv                               ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ACVR2A MUTATED     0   2   6   1
  ACVR2A WILD-TYPE   9  45 144  16
D48V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              0                9
  T2              2               45
  T3              6              144
  T4              1               16
                  vv
clus                N0  N1  N2
  ACVR2A MUTATED     7   2   0
  ACVR2A WILD-TYPE 127  42  46
D48V7, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              7              127
  N1              2               42
  N2              0               46
                  vv
clus                M0  M1 M1A
  ACVR2A MUTATED     8   1   0
  ACVR2A WILD-TYPE 181  30   1
D48V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  ACVR2A MUTATED    2  5   1  1
  ACVR2A WILD-TYPE 46 77  59 28
D48V9, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  I                2               46
  II               5               77
  III              1               59
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  ACVR2A MUTATED     7   0   1   0
  ACVR2A WILD-TYPE 181   2  26   1
D48V10, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  R0              7              181
  R1              0                2
  R2              1               26
  RX              0                1
D48V11, continuous

Clustering(49) Variable = ADAM29 MUTATION ANALYSIS
D49V1, survival
                  sevent
clus2               0  1
  ADAM29 MUTATED    8  0
  ADAM29 WILD-TYPE 98 14
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               8              112 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               0               14 
$`ADAM29 MUTATED`
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00R TCGA-AA-A02F TCGA-AA-A02W 
        0.99         1.02         1.02         0.99        39.95        40.96 
TCGA-AG-3999 TCGA-AG-A011 
        1.02        17.03 

$`ADAM29 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ADAM29 MUTATED ADAM29 WILD-TYPE 
            0.99             0.92 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
           40.96            72.07 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 41.0 (1.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D49V2, continuous
D49V3, binary
                  cls
clus                 0   1
  ADAM29 MUTATED     9   2
  ADAM29 WILD-TYPE 145  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      9    2
  ADAM29 WILD-TYPE  145   66
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON               9              145
  RECTUM              2               66
D49V4, binary
                  cls
clus                 0   1
  ADAM29 MUTATED     8   3
  ADAM29 WILD-TYPE  99 114
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      8    3
  ADAM29 WILD-TYPE   99  114
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  FEMALE              8               99
  MALE                3              114
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ADAM29 MUTATED                      8                             1
  ADAM29 WILD-TYPE                  120                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ADAM29 MUTATED                       2                              0
  ADAM29 WILD-TYPE                    55                              8
D49V5, multiclass
                                clus
vv                               ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ADAM29 MUTATED     1   4   5   1
  ADAM29 WILD-TYPE   8  43 145  16
D49V6, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  T1              1                8
  T2              4               43
  T3              5              145
  T4              1               16
                  vv
clus                N0  N1  N2
  ADAM29 MUTATED     8   2   1
  ADAM29 WILD-TYPE 126  42  45
D49V7, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  N0              8              126
  N1              2               42
  N2              1               45
                  vv
clus                M0  M1 M1A
  ADAM29 MUTATED     8   1   1
  ADAM29 WILD-TYPE 181  30   0
D49V8, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              1                0
                  vv
clus                I II III IV
  ADAM29 MUTATED    4  3   1  2
  ADAM29 WILD-TYPE 44 79  59 27
D49V9, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  I                4               44
  II               3               79
  III              1               59
  IV               2               27
                  vv
clus                R0  R1  R2  RX
  ADAM29 MUTATED     9   0   1   0
  ADAM29 WILD-TYPE 179   2  26   1
D49V10, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  R0              9              179
  R1              0                2
  R2              1               26
  RX              0                1
D49V11, continuous

Clustering(50) Variable = ATP10A MUTATION ANALYSIS
D50V1, survival
                  sevent
clus2               0  1
  ATP10A MUTATED   12  1
  ATP10A WILD-TYPE 94 13
  ATP10A MUTATED ATP10A WILD-TYPE 
              13              107 
  ATP10A MUTATED ATP10A WILD-TYPE 
               1               13 
$`ATP10A MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-3986 TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N 
        1.02         0.99         0.99        18.02        18.02         4.01 
TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01R TCGA-AG-3887 TCGA-AG-4001 TCGA-AG-A002 
       20.98         1.02        35.01         0.92         1.02        20.94 
TCGA-AG-A01W 
       70.03 

$`ATP10A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       19.00        30.02        34.03        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 
        1.02         0.99         1.02         0.95         0.99         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ATP10A MUTATED ATP10A WILD-TYPE 
            0.92             0.92 
  ATP10A MUTATED ATP10A WILD-TYPE 
           70.03            72.07 
  ATP10A MUTATED ATP10A WILD-TYPE 
            4.01            10.98 
[1] "0.9 - 70.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED"   "ATP10A MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ATP10A MUTATED"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ATP10A MUTATED" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE"   "ATP10A MUTATED" "ATP10A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" "ATP10A WILD-TYPE" 
[1] "hr=" "1.5"
D50V2, continuous
D50V3, binary
                  cls
clus                 0   1
  ATP10A MUTATED    13   6
  ATP10A WILD-TYPE 141  62
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED     13    6
  ATP10A WILD-TYPE  141   62
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  COLON              13              141
  RECTUM              6               62
D50V4, binary
                  cls
clus                 0   1
  ATP10A MUTATED    10   9
  ATP10A WILD-TYPE  97 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ATP10A MUTATED     10    9
  ATP10A WILD-TYPE   97  108
        clus
vv       ATP10A MUTATED ATP10A WILD-TYPE
  FEMALE             10               97
  MALE                9              108
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ATP10A MUTATED                      8                             5
  ATP10A WILD-TYPE                  120                            19
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ATP10A MUTATED                       5                              1
  ATP10A WILD-TYPE                    52                              7
D50V5, multiclass
                                clus
vv                               ATP10A MUTATED ATP10A WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
                  vv
clus                T1  T2  T3  T4
  ATP10A MUTATED     0   2  12   5
  ATP10A WILD-TYPE   9  45 138  12
D50V6, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  T1              0                9
  T2              2               45
  T3             12              138
  T4              5               12
                  vv
clus                N0  N1  N2
  ATP10A MUTATED    15   2   2
  ATP10A WILD-TYPE 119  42  44
D50V7, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  N0             15              119
  N1              2               42
  N2              2               44
                  vv
clus                M0  M1 M1A
  ATP10A MUTATED    18   1   0
  ATP10A WILD-TYPE 171  30   1
D50V8, multiclass
     clus
vv    ATP10A MUTATED ATP10A WILD-TYPE
  M0              18              171
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  ATP10A MUTATED    2 13   3  1
  ATP10A WILD-TYPE 46 69  57 28
D50V9, multiclass
     clus
vv    ATP10A MUTATED ATP10A WILD-TYPE
  I                2               46
  II              13               69
  III              3               57
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  ATP10A MUTATED    18   0   1   0
  ATP10A WILD-TYPE 170   2  26   1
D50V10, multiclass
    clus
vv   ATP10A MUTATED ATP10A WILD-TYPE
  R0             18              170
  R1              0                2
  R2              1               26
  RX              0                1
D50V11, continuous

Clustering(51) Variable = DNAH5 MUTATION ANALYSIS
D51V1, survival
                 sevent
clus2              0  1
  DNAH5 MUTATED   17  2
  DNAH5 WILD-TYPE 89 12
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             19             101 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
              2              12 
$`DNAH5 MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3842 
       16.54         8.09         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00N 
        0.99         0.99         1.02        18.02        19.00         4.01 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AA-A03J TCGA-AF-2691 TCGA-AG-3892 TCGA-AG-A002 
       20.98        51.95        40.93        10.62         1.02        20.94 
TCGA-AG-A02N 
       61.94 

$`DNAH5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3844 
        0.99         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E 
        1.02         1.02         0.99         0.99        13.94        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 
       39.95        18.02        16.31         0.95        15.85        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  DNAH5 MUTATED DNAH5 WILD-TYPE 
           0.99            0.92 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
          61.94           72.07 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
           8.09           12.00 
[1] "1.0 - 61.9 (8.1)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
D51V3, binary
                 cls
clus                0   1
  DNAH5 MUTATED    28   6
  DNAH5 WILD-TYPE 126  62
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     28    6
  DNAH5 WILD-TYPE  126   62
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON             28             126
  RECTUM             6              62
D51V4, binary
                 cls
clus                0   1
  DNAH5 MUTATED    18  16
  DNAH5 WILD-TYPE  89 101
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     18   16
  DNAH5 WILD-TYPE   89  101
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  FEMALE            18              89
  MALE              16             101
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DNAH5 MUTATED                     22                             5
  DNAH5 WILD-TYPE                  106                            19
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DNAH5 MUTATED                       6                              0
  DNAH5 WILD-TYPE                    51                              8
D51V5, multiclass
                                clus
vv                               DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON ADENOCARCINOMA                      22             106
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  DNAH5 MUTATED     3   7  20   4
  DNAH5 WILD-TYPE   6  40 130  13
D51V6, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  T1             3               6
  T2             7              40
  T3            20             130
  T4             4              13
                 vv
clus               N0  N1  N2
  DNAH5 MUTATED    25   4   5
  DNAH5 WILD-TYPE 109  40  41
D51V7, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  N0            25             109
  N1             4              40
  N2             5              41
                 vv
clus               M0  M1 M1A
  DNAH5 MUTATED    29   4   0
  DNAH5 WILD-TYPE 160  27   1
D51V8, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  M0             29             160
  M1              4              27
  M1A             0               1
                 vv
clus               I II III IV
  DNAH5 MUTATED    7 17   5  4
  DNAH5 WILD-TYPE 41 65  55 25
D51V9, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  I               7              41
  II             17              65
  III             5              55
  IV              4              25
                 vv
clus               R0  R1  R2  RX
  DNAH5 MUTATED    30   0   3   0
  DNAH5 WILD-TYPE 158   2  24   1
D51V10, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  R0            30             158
  R1             0               2
  R2             3              24
  RX             0               1
D51V11, continuous

Clustering(52) Variable = GABRA5 MUTATION ANALYSIS
D52V1, survival
                  sevent
clus2                0   1
  GABRA5 MUTATED     4   2
  GABRA5 WILD-TYPE 102  12
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               6              114 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               2               12 
$`GABRA5 MUTATED`
TCGA-AA-3679 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01P TCGA-AG-A002 
        0.99         4.01        20.98        15.02        38.07        20.94 

$`GABRA5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  GABRA5 MUTATED GABRA5 WILD-TYPE 
            0.99             0.92 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           38.07            72.07 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           17.98            10.77 
[1] "1.0 - 38.1 (18.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
[1] "hr=" "2.9"
D52V2, continuous
D52V3, binary
                  cls
clus                 0   1
  GABRA5 MUTATED     8   1
  GABRA5 WILD-TYPE 146  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      8    1
  GABRA5 WILD-TYPE  146   67
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D52V4, binary
                  cls
clus                 0   1
  GABRA5 MUTATED     5   4
  GABRA5 WILD-TYPE 102 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      5    4
  GABRA5 WILD-TYPE  102  113
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  FEMALE              5              102
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GABRA5 MUTATED                      7                             1
  GABRA5 WILD-TYPE                  121                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GABRA5 MUTATED                       1                              0
  GABRA5 WILD-TYPE                    56                              8
D52V5, multiclass
                                clus
vv                               GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  GABRA5 MUTATED     0   2   5   2
  GABRA5 WILD-TYPE   9  45 145  15
D52V6, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              2               15
                  vv
clus                N0  N1  N2
  GABRA5 MUTATED     6   2   1
  GABRA5 WILD-TYPE 128  42  45
D52V7, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              1               45
                  vv
clus                M0  M1 M1A
  GABRA5 MUTATED     8   1   0
  GABRA5 WILD-TYPE 181  30   1
D52V8, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  M0               8              181
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  GABRA5 MUTATED    2  4   2  1
  GABRA5 WILD-TYPE 46 78  58 28
D52V9, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  I                2               46
  II               4               78
  III              2               58
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  GABRA5 MUTATED     8   0   1   0
  GABRA5 WILD-TYPE 180   2  26   1
D52V10, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  R0              8              180
  R1              0                2
  R2              1               26
  RX              0                1
D52V11, continuous

Clustering(53) Variable = NALCN MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  NALCN MUTATED   11  1
  NALCN WILD-TYPE 95 13
  NALCN MUTATED NALCN WILD-TYPE 
             12             108 
  NALCN MUTATED NALCN WILD-TYPE 
              1              13 
$`NALCN MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A010 
       16.54         0.99         0.99         1.02        30.02        20.98 
TCGA-AA-A01Q TCGA-AA-A01Z TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02G TCGA-AG-A036 
        1.02        20.98         1.02        20.94        38.93        72.07 

$`NALCN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
       35.01         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        61.94        40.96        38.01 

  NALCN MUTATED NALCN WILD-TYPE 
           0.99            0.92 
  NALCN MUTATED NALCN WILD-TYPE 
          72.07           70.03 
  NALCN MUTATED NALCN WILD-TYPE 
          18.74           10.77 
[1] "1.0 - 72.1 (18.7)" "0.9 - 70.0 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NALCN WILD-TYPE"   "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NALCN MUTATED" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NALCN WILD-TYPE" "NALCN WILD-TYPE" "NALCN WILD-TYPE"   "NALCN MUTATED" 
[1] "hr=" "1.8"
D53V2, continuous
D53V3, binary
                 cls
clus                0   1
  NALCN MUTATED    14   6
  NALCN WILD-TYPE 140  62
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED     14    6
  NALCN WILD-TYPE  140   62
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  COLON             14             140
  RECTUM             6              62
D53V4, binary
                 cls
clus                0   1
  NALCN MUTATED     9  11
  NALCN WILD-TYPE  98 106
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NALCN MUTATED      9   11
  NALCN WILD-TYPE   98  106
        clus
vv       NALCN MUTATED NALCN WILD-TYPE
  FEMALE             9              98
  MALE              11             106
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NALCN MUTATED                     12                             1
  NALCN WILD-TYPE                  116                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NALCN MUTATED                       6                              0
  NALCN WILD-TYPE                    51                              8
D53V5, multiclass
                                clus
vv                               NALCN MUTATED NALCN WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  NALCN MUTATED     1   4  13   2
  NALCN WILD-TYPE   8  43 137  15
D53V6, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  T1             1               8
  T2             4              43
  T3            13             137
  T4             2              15
                 vv
clus               N0  N1  N2
  NALCN MUTATED    16   2   2
  NALCN WILD-TYPE 118  42  44
D53V7, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  N0            16             118
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  NALCN MUTATED    17   1   0
  NALCN WILD-TYPE 172  30   1
D53V8, multiclass
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  M0             17             172
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  NALCN MUTATED    2 12   3  1
  NALCN WILD-TYPE 46 70  57 28
D53V9, multiclass
     clus
vv    NALCN MUTATED NALCN WILD-TYPE
  I               2              46
  II             12              70
  III             3              57
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  NALCN MUTATED    17   0   2   0
  NALCN WILD-TYPE 171   2  25   1
D53V10, multiclass
    clus
vv   NALCN MUTATED NALCN WILD-TYPE
  R0            17             171
  R1             0               2
  R2             2              25
  RX             0               1
D53V11, continuous

Clustering(54) Variable = OTOL1 MUTATION ANALYSIS
D54V1, survival
                 sevent
clus2               0   1
  OTOL1 MUTATED     4   0
  OTOL1 WILD-TYPE 102  14
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              4             116 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              0              14 
$`OTOL1 MUTATED`
TCGA-AA-A010 TCGA-AA-A01S TCGA-AA-A03J TCGA-AG-A002 
       20.98         1.02        40.93        20.94 

$`OTOL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OTOL1 MUTATED OTOL1 WILD-TYPE 
           1.02            0.92 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          40.93           72.07 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          20.96           10.77 
[1] "1.0 - 40.9 (21.0)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D54V2, continuous
D54V3, binary
                 cls
clus                0   1
  OTOL1 MUTATED     7   1
  OTOL1 WILD-TYPE 147  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      7    1
  OTOL1 WILD-TYPE  147   67
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON              7             147
  RECTUM             1              67
D54V4, binary
                 cls
clus                0   1
  OTOL1 MUTATED     4   4
  OTOL1 WILD-TYPE 103 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      4    4
  OTOL1 WILD-TYPE  103  113
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  FEMALE             4             103
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OTOL1 MUTATED                      6                             1
  OTOL1 WILD-TYPE                  122                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OTOL1 MUTATED                       1                              0
  OTOL1 WILD-TYPE                    56                              8
D54V5, multiclass
                                clus
vv                               OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  OTOL1 MUTATED     0   4   2   2
  OTOL1 WILD-TYPE   9  43 148  15
D54V6, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             2             148
  T4             2              15
                 vv
clus               N0  N1  N2
  OTOL1 MUTATED     4   3   1
  OTOL1 WILD-TYPE 130  41  45
D54V7, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  N0             4             130
  N1             3              41
  N2             1              45
                 vv
clus               M0  M1 M1A
  OTOL1 MUTATED     8   0   0
  OTOL1 WILD-TYPE 181  31   1
D54V8, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  OTOL1 MUTATED    2  2   4  0
  OTOL1 WILD-TYPE 46 80  56 29
D54V9, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  I               2              46
  II              2              80
  III             4              56
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  OTOL1 MUTATED     8   0   0   0
  OTOL1 WILD-TYPE 180   2  27   1
D54V10, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  R0             8             180
  R1             0               2
  R2             0              27
  RX             0               1
D54V11, continuous

Clustering(55) Variable = PTEN MUTATION ANALYSIS
D55V1, survival
                sevent
clus2              0   1
  PTEN MUTATED     4   0
  PTEN WILD-TYPE 102  14
  PTEN MUTATED PTEN WILD-TYPE 
             4            116 
  PTEN MUTATED PTEN WILD-TYPE 
             0             14 
$`PTEN MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.98         1.02        20.94 

$`PTEN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PTEN MUTATED PTEN WILD-TYPE 
          1.02           0.92 
  PTEN MUTATED PTEN WILD-TYPE 
         20.98          72.07 
  PTEN MUTATED PTEN WILD-TYPE 
         10.98          10.95 
[1] "1.0 - 21.0 (11.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D55V2, continuous
D55V3, binary
                cls
clus               0   1
  PTEN MUTATED     4   3
  PTEN WILD-TYPE 150  65
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      4    3
  PTEN WILD-TYPE  150   65
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D55V4, binary
                cls
clus               0   1
  PTEN MUTATED     4   3
  PTEN WILD-TYPE 103 114
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      4    3
  PTEN WILD-TYPE  103  114
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            4            103
  MALE              3            114
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PTEN MUTATED                      3                             1
  PTEN WILD-TYPE                  125                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PTEN MUTATED                       2                              1
  PTEN WILD-TYPE                    55                              7
D55V5, multiclass
                                clus
vv                               PTEN MUTATED PTEN WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  PTEN MUTATED     1   2   3   1
  PTEN WILD-TYPE   8  45 147  16
D55V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            1              8
  T2            2             45
  T3            3            147
  T4            1             16
                vv
clus              N0  N1  N2
  PTEN MUTATED     5   1   1
  PTEN WILD-TYPE 129  43  45
D55V7, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0            5            129
  N1            1             43
  N2            1             45
                vv
clus              M0  M1 M1A
  PTEN MUTATED     5   1   0
  PTEN WILD-TYPE 184  30   1
D55V8, multiclass
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  PTEN MUTATED    2  2   1  1
  PTEN WILD-TYPE 46 80  59 28
D55V9, multiclass
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  I              2             46
  II             2             80
  III            1             59
  IV             1             28
                vv
clus              R0  R1  R2  RX
  PTEN MUTATED     5   0   1   0
  PTEN WILD-TYPE 183   2  26   1
D55V10, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  R0            5            183
  R1            0              2
  R2            1             26
  RX            0              1
D55V11, continuous

Clustering(56) Variable = SDK1 MUTATION ANALYSIS
D56V1, survival
                sevent
clus2             0  1
  SDK1 MUTATED   16  1
  SDK1 WILD-TYPE 90 13
  SDK1 MUTATED SDK1 WILD-TYPE 
            17            103 
  SDK1 MUTATED SDK1 WILD-TYPE 
             1             13 
$`SDK1 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3811 TCGA-AA-3842 
       16.54        17.19         1.02         1.02         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         1.02         0.99         1.02         4.01 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02O TCGA-AA-A02W TCGA-AG-A002 
        1.02        35.01         0.92        40.96        20.94 

$`SDK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 
        9.14         8.09         0.99         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 
        0.99         1.02         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02Y TCGA-AA-A03F 
       51.95        39.95         2.01         5.03        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SDK1 MUTATED SDK1 WILD-TYPE 
          0.92           0.92 
  SDK1 MUTATED SDK1 WILD-TYPE 
         40.96          72.07 
  SDK1 MUTATED SDK1 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 41.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
[1] "hr=" "1.4"
D56V2, continuous
D56V3, binary
                cls
clus               0   1
  SDK1 MUTATED    25   2
  SDK1 WILD-TYPE 129  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     25    2
  SDK1 WILD-TYPE  129   66
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  COLON            25            129
  RECTUM            2             66
D56V4, binary
                cls
clus               0   1
  SDK1 MUTATED    14  13
  SDK1 WILD-TYPE  93 104
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     14   13
  SDK1 WILD-TYPE   93  104
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  FEMALE           14             93
  MALE             13            104
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SDK1 MUTATED                     17                             7
  SDK1 WILD-TYPE                  111                            17
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SDK1 MUTATED                       2                              0
  SDK1 WILD-TYPE                    55                              8
D56V5, multiclass
                                clus
vv                               SDK1 MUTATED SDK1 WILD-TYPE
  COLON ADENOCARCINOMA                     17            111
  COLON MUCINOUS ADENOCARCINOMA             7             17
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  SDK1 MUTATED     1   5  19   2
  SDK1 WILD-TYPE   8  42 131  15
D56V6, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  T1            1              8
  T2            5             42
  T3           19            131
  T4            2             15
                vv
clus              N0  N1  N2
  SDK1 MUTATED    16   3   8
  SDK1 WILD-TYPE 118  41  38
D56V7, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  N0           16            118
  N1            3             41
  N2            8             38
                vv
clus              M0  M1 M1A
  SDK1 MUTATED    22   4   0
  SDK1 WILD-TYPE 167  27   1
D56V8, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  M0            22            167
  M1             4             27
  M1A            0              1
                vv
clus              I II III IV
  SDK1 MUTATED    4 11   7  3
  SDK1 WILD-TYPE 44 71  53 26
D56V9, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  I              4             44
  II            11             71
  III            7             53
  IV             3             26
                vv
clus              R0  R1  R2  RX
  SDK1 MUTATED    23   0   1   0
  SDK1 WILD-TYPE 165   2  26   1
D56V10, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  R0           23            165
  R1            0              2
  R2            1             26
  RX            0              1
D56V11, continuous

Clustering(57) Variable = TLL1 MUTATION ANALYSIS
D57V1, survival
                sevent
clus2             0  1
  TLL1 MUTATED    7  2
  TLL1 WILD-TYPE 99 12
  TLL1 MUTATED TLL1 WILD-TYPE 
             9            111 
  TLL1 MUTATED TLL1 WILD-TYPE 
             2             12 
$`TLL1 MUTATED`
TCGA-AA-3837 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K 
        1.02        13.94        30.02         4.01        20.98        13.02 
TCGA-AY-4070 TCGA-AG-3893 TCGA-AG-A002 
       16.31         0.99        20.94 

$`TLL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
        0.92        40.96        39.95        18.02        40.93         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         1.02         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  TLL1 MUTATED TLL1 WILD-TYPE 
          0.99           0.92 
  TLL1 MUTATED TLL1 WILD-TYPE 
         30.02          72.07 
  TLL1 MUTATED TLL1 WILD-TYPE 
         13.94          10.62 
[1] "1.0 - 30.0 (13.9)" "0.9 - 72.1 (10.6)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
[1] "hr=" "2.2"
D57V2, continuous
D57V3, binary
                cls
clus               0   1
  TLL1 MUTATED    11   4
  TLL1 WILD-TYPE 143  64
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED     11    4
  TLL1 WILD-TYPE  143   64
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  COLON            11            143
  RECTUM            4             64
D57V4, binary
                cls
clus               0   1
  TLL1 MUTATED     6   9
  TLL1 WILD-TYPE 101 108
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED      6    9
  TLL1 WILD-TYPE  101  108
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TLL1 MUTATED                      7                             4
  TLL1 WILD-TYPE                  121                            20
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TLL1 MUTATED                       3                              1
  TLL1 WILD-TYPE                    54                              7
D57V5, multiclass
                                clus
vv                               TLL1 MUTATED TLL1 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  TLL1 MUTATED     0   2  11   2
  TLL1 WILD-TYPE   9  45 139  15
D57V6, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           11            139
  T4            2             15
                vv
clus              N0  N1  N2
  TLL1 MUTATED    10   2   3
  TLL1 WILD-TYPE 124  42  43
D57V7, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  N0           10            124
  N1            2             42
  N2            3             43
                vv
clus              M0  M1 M1A
  TLL1 MUTATED    15   0   0
  TLL1 WILD-TYPE 174  31   1
D57V8, multiclass
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  M0            15            174
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  TLL1 MUTATED    2  8   5  0
  TLL1 WILD-TYPE 46 74  55 29
D57V9, multiclass
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  I              2             46
  II             8             74
  III            5             55
  IV             0             29
                vv
clus              R0  R1  R2  RX
  TLL1 MUTATED    14   1   0   0
  TLL1 WILD-TYPE 174   1  27   1
D57V10, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  R0           14            174
  R1            1              1
  R2            0             27
  RX            0              1
D57V11, continuous

Clustering(58) Variable = TMEM132D MUTATION ANALYSIS
D58V1, survival
                    sevent
clus2                 0  1
  TMEM132D MUTATED   12  1
  TMEM132D WILD-TYPE 94 13
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                13                107 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                 1                 13 
$`TMEM132D MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3844 TCGA-AA-3947 TCGA-AA-3949 
       16.54         1.02         0.99         0.92         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01R TCGA-AA-A01T TCGA-AG-A002 
        1.02         4.01         0.99        35.01        33.04        20.94 
TCGA-AG-A02N 
       61.94 

$`TMEM132D WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01V 
       12.00        13.02        38.07         1.02         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  TMEM132D MUTATED TMEM132D WILD-TYPE 
              0.92               0.92 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
             61.94              72.07 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
              1.02              12.00 
[1] "0.9 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
[1] "hr=" "1.3"
D58V2, continuous
D58V3, binary
                    cls
clus                   0   1
  TMEM132D MUTATED    15   4
  TMEM132D WILD-TYPE 139  64
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     15    4
  TMEM132D WILD-TYPE  139   64
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON                15                139
  RECTUM                4                 64
D58V4, binary
                    cls
clus                   0   1
  TMEM132D MUTATED    10   9
  TMEM132D WILD-TYPE  97 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     10    9
  TMEM132D WILD-TYPE   97  108
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  FEMALE               10                 97
  MALE                  9                108
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TMEM132D MUTATED                     10                             5
  TMEM132D WILD-TYPE                  118                            19
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TMEM132D MUTATED                       4                              0
  TMEM132D WILD-TYPE                    53                              8
D58V5, multiclass
                                clus
vv                               TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON ADENOCARCINOMA                         10                118
  COLON MUCINOUS ADENOCARCINOMA                 5                 19
  RECTAL ADENOCARCINOMA                         4                 53
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  TMEM132D MUTATED     0   4  13   2
  TMEM132D WILD-TYPE   9  43 137  15
D58V6, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  T1                0                  9
  T2                4                 43
  T3               13                137
  T4                2                 15
                    vv
clus                  N0  N1  N2
  TMEM132D MUTATED    11   4   4
  TMEM132D WILD-TYPE 123  40  42
D58V7, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  N0               11                123
  N1                4                 40
  N2                4                 42
                    vv
clus                  M0  M1 M1A
  TMEM132D MUTATED    18   0   0
  TMEM132D WILD-TYPE 171  31   1
D58V8, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  M0                18                171
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  TMEM132D MUTATED    3  7   8  0
  TMEM132D WILD-TYPE 45 75  52 29
D58V9, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  I                  3                 45
  II                 7                 75
  III                8                 52
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  TMEM132D MUTATED    17   0   0   0
  TMEM132D WILD-TYPE 171   2  27   1
D58V10, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  R0               17                171
  R1                0                  2
  R2                0                 27
  RX                0                  1
D58V11, continuous

Clustering(59) Variable = TRPC4 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  TRPC4 MUTATED    8  1
  TRPC4 WILD-TYPE 98 13
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              9             111 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              1              13 
$`TRPC4 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-A00N 
        0.99         1.02         0.99         0.99         1.02         4.01 
TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       20.98         1.02        20.94 

$`TRPC4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  TRPC4 MUTATED TRPC4 WILD-TYPE 
           0.99            0.92 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
          20.98           72.07 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
[1] "hr=" "1.8"
D59V2, continuous
D59V3, binary
                 cls
clus                0   1
  TRPC4 MUTATED    12   5
  TRPC4 WILD-TYPE 142  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED     12    5
  TRPC4 WILD-TYPE  142   63
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  COLON             12             142
  RECTUM             5              63
D59V4, binary
                 cls
clus                0   1
  TRPC4 MUTATED    10   7
  TRPC4 WILD-TYPE  97 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED     10    7
  TRPC4 WILD-TYPE   97  110
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  FEMALE            10              97
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TRPC4 MUTATED                      7                             5
  TRPC4 WILD-TYPE                  121                            19
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TRPC4 MUTATED                       4                              1
  TRPC4 WILD-TYPE                    53                              7
D59V5, multiclass
                                clus
vv                               TRPC4 MUTATED TRPC4 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  TRPC4 MUTATED     2   1  10   4
  TRPC4 WILD-TYPE   7  46 140  13
D59V6, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  T1             2               7
  T2             1              46
  T3            10             140
  T4             4              13
                 vv
clus               N0  N1  N2
  TRPC4 MUTATED    12   5   0
  TRPC4 WILD-TYPE 122  39  46
D59V7, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  N0            12             122
  N1             5              39
  N2             0              46
                 vv
clus               M0  M1 M1A
  TRPC4 MUTATED    16   1   0
  TRPC4 WILD-TYPE 173  30   1
D59V8, multiclass
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  M0             16             173
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  TRPC4 MUTATED    3  9   4  1
  TRPC4 WILD-TYPE 45 73  56 28
D59V9, multiclass
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  I               3              45
  II              9              73
  III             4              56
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  TRPC4 MUTATED    14   0   2   0
  TRPC4 WILD-TYPE 174   2  25   1
D59V10, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  R0            14             174
  R1             0               2
  R2             2              25
  RX             0               1
D59V11, continuous

Clustering(60) Variable = ATM MUTATION ANALYSIS
D60V1, survival
               sevent
clus2            0  1
  ATM MUTATED   13  1
  ATM WILD-TYPE 93 13
  ATM MUTATED ATM WILD-TYPE 
           14           106 
  ATM MUTATED ATM WILD-TYPE 
            1            13 
$`ATM MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3966 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02Y TCGA-AG-3727 
        1.02         4.01        20.98        35.01        39.95         0.95 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`ATM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        1.02         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ATM MUTATED ATM WILD-TYPE 
         0.95          0.92 
  ATM MUTATED ATM WILD-TYPE 
        39.95         72.07 
  ATM MUTATED ATM WILD-TYPE 
         1.02         12.00 
[1] "0.9 - 40.0 (1.0)"  "0.9 - 72.1 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
               cls
clus              0   1
  ATM MUTATED    21   4
  ATM WILD-TYPE 133  64
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     21    4
  ATM WILD-TYPE  133   64
        clus
vv       ATM MUTATED ATM WILD-TYPE
  COLON           21           133
  RECTUM           4            64
D60V4, binary
               cls
clus              0   1
  ATM MUTATED    16   9
  ATM WILD-TYPE  91 108
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     16    9
  ATM WILD-TYPE   91  108
        clus
vv       ATM MUTATED ATM WILD-TYPE
  FEMALE          16            91
  MALE             9           108
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ATM MUTATED                     16                             5
  ATM WILD-TYPE                  112                            19
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ATM MUTATED                       4                              0
  ATM WILD-TYPE                    53                              8
D60V5, multiclass
                                clus
vv                               ATM MUTATED ATM WILD-TYPE
  COLON ADENOCARCINOMA                    16           112
  COLON MUCINOUS ADENOCARCINOMA            5            19
  RECTAL ADENOCARCINOMA                    4            53
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
               vv
clus             T1  T2  T3  T4
  ATM MUTATED     1   5  16   3
  ATM WILD-TYPE   8  42 134  14
D60V6, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  T1           1             8
  T2           5            42
  T3          16           134
  T4           3            14
               vv
clus             N0  N1  N2
  ATM MUTATED    17   3   5
  ATM WILD-TYPE 117  41  41
D60V7, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  N0          17           117
  N1           3            41
  N2           5            41
               vv
clus             M0  M1 M1A
  ATM MUTATED    23   1   0
  ATM WILD-TYPE 166  30   1
D60V8, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  M0           23           166
  M1            1            30
  M1A           0             1
               vv
clus             I II III IV
  ATM MUTATED    4 12   7  1
  ATM WILD-TYPE 44 70  53 28
D60V9, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  I             4            44
  II           12            70
  III           7            53
  IV            1            28
               vv
clus             R0  R1  R2  RX
  ATM MUTATED    21   0   1   0
  ATM WILD-TYPE 167   2  26   1
D60V10, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  R0          21           167
  R1           0             2
  R2           1            26
  RX           0             1
D60V11, continuous

Clustering(61) Variable = GPC6 MUTATION ANALYSIS
D61V1, survival
                sevent
clus2             0  1
  GPC6 MUTATED    7  0
  GPC6 WILD-TYPE 99 14
  GPC6 MUTATED GPC6 WILD-TYPE 
             7            113 
  GPC6 MUTATED GPC6 WILD-TYPE 
             0             14 
$`GPC6 MUTATED`
TCGA-A6-3810 TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A00U TCGA-AA-A01Q TCGA-AG-3599 
        8.09         0.99        18.02        17.00         1.02         0.99 
TCGA-AG-4007 
        1.02 

$`GPC6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 
       10.39         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  GPC6 MUTATED GPC6 WILD-TYPE 
          0.99           0.92 
  GPC6 MUTATED GPC6 WILD-TYPE 
         18.02          72.07 
  GPC6 MUTATED GPC6 WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 18.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D61V2, continuous
D61V3, binary
                cls
clus               0   1
  GPC6 MUTATED     7   3
  GPC6 WILD-TYPE 147  65
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      7    3
  GPC6 WILD-TYPE  147   65
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  COLON             7            147
  RECTUM            3             65
D61V4, binary
                cls
clus               0   1
  GPC6 MUTATED     5   5
  GPC6 WILD-TYPE 102 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      5    5
  GPC6 WILD-TYPE  102  112
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  FEMALE            5            102
  MALE              5            112
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GPC6 MUTATED                      4                             3
  GPC6 WILD-TYPE                  124                            21
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GPC6 MUTATED                       2                              0
  GPC6 WILD-TYPE                    55                              8
D61V5, multiclass
                                clus
vv                               GPC6 MUTATED GPC6 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  GPC6 MUTATED     1   1   5   3
  GPC6 WILD-TYPE   8  46 145  14
D61V6, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            5            145
  T4            3             14
                vv
clus              N0  N1  N2
  GPC6 MUTATED     6   2   2
  GPC6 WILD-TYPE 128  42  44
D61V7, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  N0            6            128
  N1            2             42
  N2            2             44
                vv
clus              M0  M1 M1A
  GPC6 MUTATED     8   2   0
  GPC6 WILD-TYPE 181  29   1
D61V8, multiclass
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  M0             8            181
  M1             2             29
  M1A            0              1
                vv
clus              I II III IV
  GPC6 MUTATED    2  4   2  2
  GPC6 WILD-TYPE 46 78  58 27
D61V9, multiclass
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  I              2             46
  II             4             78
  III            2             58
  IV             2             27
                vv
clus              R0  R1  R2  RX
  GPC6 MUTATED     8   0   2   0
  GPC6 WILD-TYPE 180   2  25   1
D61V10, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  R0            8            180
  R1            0              2
  R2            2             25
  RX            0              1
D61V11, continuous

Clustering(62) Variable = CDH8 MUTATION ANALYSIS
D62V1, survival
                sevent
clus2              0   1
  CDH8 MUTATED     6   1
  CDH8 WILD-TYPE 100  13
  CDH8 MUTATED CDH8 WILD-TYPE 
             7            113 
  CDH8 MUTATED CDH8 WILD-TYPE 
             1             13 
$`CDH8 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01Q TCGA-AF-2689 TCGA-AG-A002 
        1.02         4.01         0.99         1.02        15.85        20.94 
TCGA-AG-A016 
        1.02 

$`CDH8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31         0.95        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  CDH8 MUTATED CDH8 WILD-TYPE 
          0.99           0.92 
  CDH8 MUTATED CDH8 WILD-TYPE 
         20.94          72.07 
  CDH8 MUTATED CDH8 WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
[1] "hr=" "2.1"
D62V2, continuous
D62V3, binary
                cls
clus               0   1
  CDH8 MUTATED    10   4
  CDH8 WILD-TYPE 144  64
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED     10    4
  CDH8 WILD-TYPE  144   64
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  COLON            10            144
  RECTUM            4             64
D62V4, binary
                cls
clus               0   1
  CDH8 MUTATED     7   7
  CDH8 WILD-TYPE 100 110
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      7    7
  CDH8 WILD-TYPE  100  110
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  FEMALE            7            100
  MALE              7            110
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CDH8 MUTATED                      9                             1
  CDH8 WILD-TYPE                  119                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CDH8 MUTATED                       4                              0
  CDH8 WILD-TYPE                    53                              8
D62V5, multiclass
                                clus
vv                               CDH8 MUTATED CDH8 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  CDH8 MUTATED     0   4   9   1
  CDH8 WILD-TYPE   9  43 141  16
D62V6, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  T1            0              9
  T2            4             43
  T3            9            141
  T4            1             16
                vv
clus              N0  N1  N2
  CDH8 MUTATED     9   2   3
  CDH8 WILD-TYPE 125  42  43
D62V7, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  N0            9            125
  N1            2             42
  N2            3             43
                vv
clus              M0  M1 M1A
  CDH8 MUTATED    10   3   0
  CDH8 WILD-TYPE 179  28   1
D62V8, multiclass
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  M0            10            179
  M1             3             28
  M1A            0              1
                vv
clus              I II III IV
  CDH8 MUTATED    3  5   2  2
  CDH8 WILD-TYPE 45 77  58 27
D62V9, multiclass
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  I              3             45
  II             5             77
  III            2             58
  IV             2             27
                vv
clus              R0  R1  R2  RX
  CDH8 MUTATED    11   0   2   0
  CDH8 WILD-TYPE 177   2  25   1
D62V10, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  R0           11            177
  R1            0              2
  R2            2             25
  RX            0              1
D62V11, continuous

Clustering(63) Variable = MGC26647 MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  MGC26647 MUTATED     3   1
  MGC26647 WILD-TYPE 103  13
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 4                116 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 1                 13 
$`MGC26647 MUTATED`
TCGA-AA-3811 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02W 
        0.99         4.01        20.98        40.96 

$`MGC26647 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  MGC26647 MUTATED MGC26647 WILD-TYPE 
              0.99               0.92 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
             40.96              72.07 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
            12.495             10.950 
[1] "1.0 - 41.0 (12.5)" "0.9 - 72.1 (10.9)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
[1] "hr=" "1.6"
D63V2, continuous
D63V3, binary
                    cls
clus                   0   1
  MGC26647 MUTATED     7   0
  MGC26647 WILD-TYPE 147  68
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      7    0
  MGC26647 WILD-TYPE  147   68
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON                 7                147
  RECTUM                0                 68
D63V4, binary
                    cls
clus                   0   1
  MGC26647 MUTATED     5   2
  MGC26647 WILD-TYPE 102 115
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    2
  MGC26647 WILD-TYPE  102  115
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  FEMALE                5                102
  MALE                  2                115
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  MGC26647 MUTATED                      5                             2
  MGC26647 WILD-TYPE                  123                            22
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  MGC26647 MUTATED                       0                              0
  MGC26647 WILD-TYPE                    57                              8
D63V5, multiclass
                                clus
vv                               MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON ADENOCARCINOMA                          5                123
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         0                 57
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  MGC26647 MUTATED     0   2   3   2
  MGC26647 WILD-TYPE   9  45 147  15
D63V6, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  T1                0                  9
  T2                2                 45
  T3                3                147
  T4                2                 15
                    vv
clus                  N0  N1  N2
  MGC26647 MUTATED     6   0   1
  MGC26647 WILD-TYPE 128  44  45
D63V7, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  N0                6                128
  N1                0                 44
  N2                1                 45
                    vv
clus                  M0  M1 M1A
  MGC26647 MUTATED     7   0   0
  MGC26647 WILD-TYPE 182  31   1
D63V8, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  M0                 7                182
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  MGC26647 MUTATED    2  4   1  0
  MGC26647 WILD-TYPE 46 78  59 29
D63V9, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  I                  2                 46
  II                 4                 78
  III                1                 59
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  MGC26647 MUTATED     7   0   0   0
  MGC26647 WILD-TYPE 181   2  27   1
D63V10, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  R0                7                181
  R1                0                  2
  R2                0                 27
  RX                0                  1
D63V11, continuous

Clustering(64) Variable = DKK4 MUTATION ANALYSIS
D64V1, survival
                sevent
clus2              0   1
  DKK4 MUTATED     5   1
  DKK4 WILD-TYPE 101  13
  DKK4 MUTATED DKK4 WILD-TYPE 
             6            114 
  DKK4 MUTATED DKK4 WILD-TYPE 
             1             13 
$`DKK4 MUTATED`
TCGA-AA-3715 TCGA-AA-3854 TCGA-AA-A00N TCGA-AG-3582 TCGA-AG-3727 TCGA-AG-A02N 
        0.99         1.02         4.01         1.02         0.95        61.94 

$`DKK4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         1.02         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  DKK4 MUTATED DKK4 WILD-TYPE 
          0.95           0.92 
  DKK4 MUTATED DKK4 WILD-TYPE 
         61.94          72.07 
  DKK4 MUTATED DKK4 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 61.9 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE"   "DKK4 MUTATED" "DKK4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "DKK4 MUTATED" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" "DKK4 WILD-TYPE" 
[1] "hr=" "1.8"
D64V2, continuous
D64V3, binary
                cls
clus               0   1
  DKK4 MUTATED     4   3
  DKK4 WILD-TYPE 150  65
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      4    3
  DKK4 WILD-TYPE  150   65
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D64V4, binary
                cls
clus               0   1
  DKK4 MUTATED     3   4
  DKK4 WILD-TYPE 104 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  DKK4 MUTATED      3    4
  DKK4 WILD-TYPE  104  113
        clus
vv       DKK4 MUTATED DKK4 WILD-TYPE
  FEMALE            3            104
  MALE              4            113
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DKK4 MUTATED                      2                             2
  DKK4 WILD-TYPE                  126                            22
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DKK4 MUTATED                       3                              0
  DKK4 WILD-TYPE                    54                              8
D64V5, multiclass
                                clus
vv                               DKK4 MUTATED DKK4 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  DKK4 MUTATED     0   1   5   1
  DKK4 WILD-TYPE   9  46 145  16
D64V6, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            1             16
                vv
clus              N0  N1  N2
  DKK4 MUTATED     5   2   0
  DKK4 WILD-TYPE 129  42  46
D64V7, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            0             46
                vv
clus              M0  M1 M1A
  DKK4 MUTATED     6   1   0
  DKK4 WILD-TYPE 183  30   1
D64V8, multiclass
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  DKK4 MUTATED    1  4   1  1
  DKK4 WILD-TYPE 47 78  59 28
D64V9, multiclass
     clus
vv    DKK4 MUTATED DKK4 WILD-TYPE
  I              1             47
  II             4             78
  III            1             59
  IV             1             28
                vv
clus              R0  R1  R2  RX
  DKK4 MUTATED     6   0   1   0
  DKK4 WILD-TYPE 182   2  26   1
D64V10, multiclass
    clus
vv   DKK4 MUTATED DKK4 WILD-TYPE
  R0            6            182
  R1            0              2
  R2            1             26
  RX            0              1
D64V11, continuous

Clustering(65) Variable = PTPRM MUTATION ANALYSIS
D65V1, survival
                 sevent
clus2              0  1
  PTPRM MUTATED   12  3
  PTPRM WILD-TYPE 94 11
  PTPRM MUTATED PTPRM WILD-TYPE 
             15             105 
  PTPRM MUTATED PTPRM WILD-TYPE 
              3              11 
$`PTPRM MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3977 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
       30.02         4.01        20.98         1.02         0.99         0.99 
TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A036 
       20.94        61.94        72.07 

$`PTPRM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       38.93        40.96        38.01 

  PTPRM MUTATED PTPRM WILD-TYPE 
           0.99            0.92 
  PTPRM MUTATED PTPRM WILD-TYPE 
          72.07           70.03 
  PTPRM MUTATED PTPRM WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 72.1 (1.0)"  "0.9 - 70.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"PTPRM WILD-TYPE"   "PTPRM MUTATED"   "PTPRM MUTATED"   "PTPRM MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
[1] "hr=" "2.1"
D65V2, continuous
D65V3, binary
                 cls
clus                0   1
  PTPRM MUTATED    14   6
  PTPRM WILD-TYPE 140  62
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED     14    6
  PTPRM WILD-TYPE  140   62
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  COLON             14             140
  RECTUM             6              62
D65V4, binary
                 cls
clus                0   1
  PTPRM MUTATED     8  12
  PTPRM WILD-TYPE  99 105
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED      8   12
  PTPRM WILD-TYPE   99  105
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  FEMALE             8              99
  MALE              12             105
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PTPRM MUTATED                     10                             4
  PTPRM WILD-TYPE                  118                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PTPRM MUTATED                       6                              0
  PTPRM WILD-TYPE                    51                              8
D65V5, multiclass
                                clus
vv                               PTPRM MUTATED PTPRM WILD-TYPE
  COLON ADENOCARCINOMA                      10             118
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  PTPRM MUTATED     1   2  14   3
  PTPRM WILD-TYPE   8  45 136  14
D65V6, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  T1             1               8
  T2             2              45
  T3            14             136
  T4             3              14
                 vv
clus               N0  N1  N2
  PTPRM MUTATED    14   3   3
  PTPRM WILD-TYPE 120  41  43
D65V7, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  N0            14             120
  N1             3              41
  N2             3              43
                 vv
clus               M0  M1 M1A
  PTPRM MUTATED    18   1   0
  PTPRM WILD-TYPE 171  30   1
D65V8, multiclass
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  M0             18             171
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  PTPRM MUTATED    2 11   5  1
  PTPRM WILD-TYPE 46 71  55 28
D65V9, multiclass
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  I               2              46
  II             11              71
  III             5              55
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  PTPRM MUTATED    17   0   1   0
  PTPRM WILD-TYPE 171   2  26   1
D65V10, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  R0            17             171
  R1             0               2
  R2             1              26
  RX             0               1
D65V11, continuous

Clustering(66) Variable = AFF2 MUTATION ANALYSIS
D66V1, survival
                sevent
clus2             0  1
  AFF2 MUTATED    9  1
  AFF2 WILD-TYPE 97 13
  AFF2 MUTATED AFF2 WILD-TYPE 
            10            110 
  AFF2 MUTATED AFF2 WILD-TYPE 
             1             13 
$`AFF2 MUTATED`
TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3846 TCGA-AA-3949 TCGA-AA-A00N 
       14.70         9.14         8.09         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02Y TCGA-AG-3892 TCGA-AG-A002 
       20.98        39.95         1.02        20.94 

$`AFF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
       10.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  AFF2 MUTATED AFF2 WILD-TYPE 
          0.99           0.92 
  AFF2 MUTATED AFF2 WILD-TYPE 
         39.95          72.07 
  AFF2 MUTATED AFF2 WILD-TYPE 
         8.615         11.490 
[1] "1.0 - 40.0 (8.6)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
D66V3, binary
                cls
clus               0   1
  AFF2 MUTATED    15   2
  AFF2 WILD-TYPE 139  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     15    2
  AFF2 WILD-TYPE  139   66
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  COLON            15            139
  RECTUM            2             66
D66V4, binary
                cls
clus               0   1
  AFF2 MUTATED     7  10
  AFF2 WILD-TYPE 100 107
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED      7   10
  AFF2 WILD-TYPE  100  107
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  FEMALE            7            100
  MALE             10            107
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  AFF2 MUTATED                     10                             5
  AFF2 WILD-TYPE                  118                            19
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  AFF2 MUTATED                       2                              0
  AFF2 WILD-TYPE                    55                              8
D66V5, multiclass
                                clus
vv                               AFF2 MUTATED AFF2 WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  AFF2 MUTATED     1   2  11   2
  AFF2 WILD-TYPE   8  45 139  15
D66V6, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  T1            1              8
  T2            2             45
  T3           11            139
  T4            2             15
                vv
clus              N0  N1  N2
  AFF2 MUTATED    12   3   2
  AFF2 WILD-TYPE 122  41  44
D66V7, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  N0           12            122
  N1            3             41
  N2            2             44
                vv
clus              M0  M1 M1A
  AFF2 MUTATED    17   0   0
  AFF2 WILD-TYPE 172  31   1
D66V8, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  M0            17            172
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  AFF2 MUTATED    3  9   5  0
  AFF2 WILD-TYPE 45 73  55 29
D66V9, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  I              3             45
  II             9             73
  III            5             55
  IV             0             29
                vv
clus              R0  R1  R2  RX
  AFF2 MUTATED    15   0   0   0
  AFF2 WILD-TYPE 173   2  27   1
D66V10, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  R0           15            173
  R1            0              2
  R2            0             27
  RX            0              1
D66V11, continuous

Clustering(67) Variable = NCAM2 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  NCAM2 MUTATED    8  1
  NCAM2 WILD-TYPE 98 13
  NCAM2 MUTATED NCAM2 WILD-TYPE 
              9             111 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
              1              13 
$`NCAM2 MUTATED`
TCGA-AA-3877 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K 
        0.99         0.99         1.02         4.01        20.98        13.02 
TCGA-AG-3892 TCGA-AG-4008 TCGA-AG-A002 
        1.02         1.02        20.94 

$`NCAM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  NCAM2 MUTATED NCAM2 WILD-TYPE 
           0.99            0.92 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
          20.98           72.07 
  NCAM2 MUTATED NCAM2 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NCAM2 WILD-TYPE"   "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE"   "NCAM2 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NCAM2 MUTATED" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" "NCAM2 WILD-TYPE" 
[1] "hr=" "1.5"
D67V2, continuous
D67V3, binary
                 cls
clus                0   1
  NCAM2 MUTATED     7   5
  NCAM2 WILD-TYPE 147  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED      7    5
  NCAM2 WILD-TYPE  147   63
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  COLON              7             147
  RECTUM             5              63
D67V4, binary
                 cls
clus                0   1
  NCAM2 MUTATED     6   6
  NCAM2 WILD-TYPE 101 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NCAM2 MUTATED      6    6
  NCAM2 WILD-TYPE  101  111
        clus
vv       NCAM2 MUTATED NCAM2 WILD-TYPE
  FEMALE             6             101
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NCAM2 MUTATED                      4                             3
  NCAM2 WILD-TYPE                  124                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NCAM2 MUTATED                       5                              0
  NCAM2 WILD-TYPE                    52                              8
D67V5, multiclass
                                clus
vv                               NCAM2 MUTATED NCAM2 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  NCAM2 MUTATED     2   3   5   2
  NCAM2 WILD-TYPE   7  44 145  15
D67V6, multiclass
    clus
vv   NCAM2 MUTATED NCAM2 WILD-TYPE
  T1             2               7
  T2             3              44
  T3             5             145
  T4             2              15
                 vv
clus               N0  N1  N2
  NCAM2 MUTATED     9   1   2
  NCAM2 WILD-TYPE 125  43  44
D67V7, multiclass
    clus
vv   NCAM2 MUTATED NCAM2 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             2              44
                 vv
clus               M0  M1 M1A
  NCAM2 MUTATED    10   1   0
  NCAM2 WILD-TYPE 179  30   1
D67V8, multiclass
     clus
vv    NCAM2 MUTATED NCAM2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  NCAM2 MUTATED    4  4   2  1
  NCAM2 WILD-TYPE 44 78  58 28
D67V9, multiclass
     clus
vv    NCAM2 MUTATED NCAM2 WILD-TYPE
  I               4              44
  II              4              78
  III             2              58
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  NCAM2 MUTATED    10   0   1   0
  NCAM2 WILD-TYPE 178   2  26   1
D67V10, multiclass
    clus
vv   NCAM2 MUTATED NCAM2 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             1              26
  RX             0               1
D67V11, continuous

Clustering(68) Variable = OR2M4 MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2               0   1
  OR2M4 MUTATED     5   0
  OR2M4 WILD-TYPE 101  14
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              5             115 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              0              14 
$`OR2M4 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3986 TCGA-AA-A010 TCGA-AA-A02O 
        0.99         0.99         0.99        20.98         0.92 

$`OR2M4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.92            0.92 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          20.98           72.07 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.99           12.00 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
[1] "hr="     "9200000"
D68V2, continuous
D68V3, binary
                 cls
clus                0   1
  OR2M4 MUTATED     8   0
  OR2M4 WILD-TYPE 146  68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  146   68
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON              8             146
  RECTUM             0              68
D68V4, binary
                 cls
clus                0   1
  OR2M4 MUTATED     5   3
  OR2M4 WILD-TYPE 102 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      5    3
  OR2M4 WILD-TYPE  102  114
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  FEMALE             5             102
  MALE               3             114
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR2M4 MUTATED                      8                             0
  OR2M4 WILD-TYPE                  120                            24
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR2M4 MUTATED                       0                              0
  OR2M4 WILD-TYPE                    57                              8
D68V5, multiclass
                                clus
vv                               OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  OR2M4 MUTATED     0   1   6   1
  OR2M4 WILD-TYPE   9  46 144  16
D68V6, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             6             144
  T4             1              16
                 vv
clus               N0  N1  N2
  OR2M4 MUTATED     5   1   2
  OR2M4 WILD-TYPE 129  43  44
D68V7, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             2              44
                 vv
clus               M0  M1 M1A
  OR2M4 MUTATED     7   1   0
  OR2M4 WILD-TYPE 182  30   1
D68V8, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  M0              7             182
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  OR2M4 MUTATED    1  4   2  1
  OR2M4 WILD-TYPE 47 78  58 28
D68V9, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  I               1              47
  II              4              78
  III             2              58
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  OR2M4 MUTATED     8   0   0   0
  OR2M4 WILD-TYPE 180   2  27   1
D68V10, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  R0             8             180
  R1             0               2
  R2             0              27
  RX             0               1
D68V11, continuous

Clustering(69) Variable = RYR2 MUTATION ANALYSIS
D69V1, survival
                sevent
clus2             0  1
  RYR2 MUTATED   18  3
  RYR2 WILD-TYPE 88 11
  RYR2 MUTATED RYR2 WILD-TYPE 
            21             99 
  RYR2 MUTATED RYR2 WILD-TYPE 
             3             11 
$`RYR2 MUTATED`
TCGA-A6-3807 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3966 
       10.92         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01Z 
        1.02         4.01        20.98        13.02        35.01        20.98 
TCGA-AA-A029 TCGA-AA-A02Y TCGA-AY-4070 TCGA-AG-3892 TCGA-AG-4007 TCGA-AG-A002 
       51.95        39.95        16.31         1.02         1.02        20.94 
TCGA-AG-A01W TCGA-AG-A025 TCGA-AG-A036 
       70.03        49.94        72.07 

$`RYR2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       26.01        39.06        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       40.96        18.02        40.93         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G 
        1.02        12.00        63.98        10.98         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       61.94        40.96        38.01 

  RYR2 MUTATED RYR2 WILD-TYPE 
          0.99           0.92 
  RYR2 MUTATED RYR2 WILD-TYPE 
         72.07          63.98 
  RYR2 MUTATED RYR2 WILD-TYPE 
         13.02          10.62 
[1] "1.0 - 72.1 (13.0)" "0.9 - 64.0 (10.6)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
                cls
clus               0   1
  RYR2 MUTATED    22   7
  RYR2 WILD-TYPE 132  61
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     22    7
  RYR2 WILD-TYPE  132   61
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  COLON            22            132
  RECTUM            7             61
D69V4, binary
                cls
clus               0   1
  RYR2 MUTATED    16  13
  RYR2 WILD-TYPE  91 104
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     16   13
  RYR2 WILD-TYPE   91  104
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  FEMALE           16             91
  MALE             13            104
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  RYR2 MUTATED                     18                             4
  RYR2 WILD-TYPE                  110                            20
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  RYR2 MUTATED                       7                              0
  RYR2 WILD-TYPE                    50                              8
D69V5, multiclass
                                clus
vv                               RYR2 MUTATED RYR2 WILD-TYPE
  COLON ADENOCARCINOMA                     18            110
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  RYR2 MUTATED     2   3  20   4
  RYR2 WILD-TYPE   7  44 130  13
D69V6, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  T1            2              7
  T2            3             44
  T3           20            130
  T4            4             13
                vv
clus              N0  N1  N2
  RYR2 MUTATED    16   6   7
  RYR2 WILD-TYPE 118  38  39
D69V7, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  N0           16            118
  N1            6             38
  N2            7             39
                vv
clus              M0  M1 M1A
  RYR2 MUTATED    25   3   0
  RYR2 WILD-TYPE 164  28   1
D69V8, multiclass
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  M0            25            164
  M1             3             28
  M1A            0              1
                vv
clus              I II III IV
  RYR2 MUTATED    4 11  10  3
  RYR2 WILD-TYPE 44 71  50 26
D69V9, multiclass
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  I              4             44
  II            11             71
  III           10             50
  IV             3             26
                vv
clus              R0  R1  R2  RX
  RYR2 MUTATED    23   1   2   0
  RYR2 WILD-TYPE 165   1  25   1
D69V10, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  R0           23            165
  R1            1              1
  R2            2             25
  RX            0              1
D69V11, continuous

Clustering(70) Variable = CDH9 MUTATION ANALYSIS
D70V1, survival
                sevent
clus2              0   1
  CDH9 MUTATED     6   3
  CDH9 WILD-TYPE 100  11
  CDH9 MUTATED CDH9 WILD-TYPE 
             9            111 
  CDH9 MUTATED CDH9 WILD-TYPE 
             3             11 
$`CDH9 MUTATED`
TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AY-4071 
        1.02        18.02        30.02         4.01        20.98         0.95 
TCGA-AF-3913 TCGA-AG-3892 TCGA-AG-A002 
       10.39         1.02        20.94 

$`CDH9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       13.94        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 
       16.31        15.85        10.62        13.55        12.72         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CDH9 MUTATED CDH9 WILD-TYPE 
          0.95           0.92 
  CDH9 MUTATED CDH9 WILD-TYPE 
         30.02          72.07 
  CDH9 MUTATED CDH9 WILD-TYPE 
         10.39          10.98 
[1] "0.9 - 30.0 (10.4)" "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE"   "CDH9 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CDH9 WILD-TYPE"   "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CDH9 MUTATED" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" "CDH9 WILD-TYPE" 
[1] "hr=" "4"  
D70V2, continuous
D70V3, binary
                cls
clus               0   1
  CDH9 MUTATED     9   5
  CDH9 WILD-TYPE 145  63
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      9    5
  CDH9 WILD-TYPE  145   63
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  COLON             9            145
  RECTUM            5             63
D70V4, binary
                cls
clus               0   1
  CDH9 MUTATED     6   9
  CDH9 WILD-TYPE 101 108
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH9 MUTATED      6    9
  CDH9 WILD-TYPE  101  108
        clus
vv       CDH9 MUTATED CDH9 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CDH9 MUTATED                      7                             1
  CDH9 WILD-TYPE                  121                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CDH9 MUTATED                       5                              0
  CDH9 WILD-TYPE                    52                              8
D70V5, multiclass
                                clus
vv                               CDH9 MUTATED CDH9 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     5             52
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  CDH9 MUTATED     2   2   9   2
  CDH9 WILD-TYPE   7  45 141  15
D70V6, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  T1            2              7
  T2            2             45
  T3            9            141
  T4            2             15
                vv
clus              N0  N1  N2
  CDH9 MUTATED    14   1   0
  CDH9 WILD-TYPE 120  43  46
D70V7, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  N0           14            120
  N1            1             43
  N2            0             46
                vv
clus              M0  M1 M1A
  CDH9 MUTATED    12   1   0
  CDH9 WILD-TYPE 177  30   1
D70V8, multiclass
     clus
vv    CDH9 MUTATED CDH9 WILD-TYPE
  M0            12            177
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  CDH9 MUTATED    3 10   0  0
  CDH9 WILD-TYPE 45 72  60 29
D70V9, multiclass
     clus
vv    CDH9 MUTATED CDH9 WILD-TYPE
  I              3             45
  II            10             72
  III            0             60
  IV             0             29
                vv
clus              R0  R1  R2  RX
  CDH9 MUTATED    14   0   0   0
  CDH9 WILD-TYPE 174   2  27   1
D70V10, multiclass
    clus
vv   CDH9 MUTATED CDH9 WILD-TYPE
  R0           14            174
  R1            0              2
  R2            0             27
  RX            0              1
D70V11, continuous

Clustering(71) Variable = GRIK3 MUTATION ANALYSIS
D71V1, survival
                 sevent
clus2              0  1
  GRIK3 MUTATED    7  1
  GRIK3 WILD-TYPE 99 13
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              8             112 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              1              13 
$`GRIK3 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A01I TCGA-AA-A02O 
        1.02         1.02        18.02         4.01        12.00         0.92 
TCGA-AG-A002 TCGA-AG-A011 
       20.94        17.03 

$`GRIK3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        23.01        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  GRIK3 MUTATED GRIK3 WILD-TYPE 
           0.92            0.92 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          20.94           72.07 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          8.005          10.950 
[1] "0.9 - 20.9 (8.0)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
[1] "hr=" "1.4"
D71V2, continuous
D71V3, binary
                 cls
clus                0   1
  GRIK3 MUTATED    14   3
  GRIK3 WILD-TYPE 140  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     14    3
  GRIK3 WILD-TYPE  140   65
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON             14             140
  RECTUM             3              65
D71V4, binary
                 cls
clus                0   1
  GRIK3 MUTATED     5  12
  GRIK3 WILD-TYPE 102 105
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED      5   12
  GRIK3 WILD-TYPE  102  105
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  FEMALE             5             102
  MALE              12             105
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GRIK3 MUTATED                     11                             3
  GRIK3 WILD-TYPE                  117                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GRIK3 MUTATED                       3                              0
  GRIK3 WILD-TYPE                    54                              8
D71V5, multiclass
                                clus
vv                               GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  GRIK3 MUTATED     0   5  11   1
  GRIK3 WILD-TYPE   9  42 139  16
D71V6, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            11             139
  T4             1              16
                 vv
clus               N0  N1  N2
  GRIK3 MUTATED    14   2   1
  GRIK3 WILD-TYPE 120  42  45
D71V7, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  N0            14             120
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  GRIK3 MUTATED    14   2   0
  GRIK3 WILD-TYPE 175  29   1
D71V8, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  M0             14             175
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  GRIK3 MUTATED    4  9   1  2
  GRIK3 WILD-TYPE 44 73  59 27
D71V9, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  I               4              44
  II              9              73
  III             1              59
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  GRIK3 MUTATED    13   0   2   0
  GRIK3 WILD-TYPE 175   2  25   1
D71V10, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  R0            13             175
  R1             0               2
  R2             2              25
  RX             0               1
D71V11, continuous

Clustering(72) Variable = ELF3 MUTATION ANALYSIS
D72V1, survival
                sevent
clus2              0   1
  ELF3 MUTATED     3   0
  ELF3 WILD-TYPE 103  14
  ELF3 MUTATED ELF3 WILD-TYPE 
             3            117 
  ELF3 MUTATED ELF3 WILD-TYPE 
             0             14 
$`ELF3 MUTATED`
TCGA-A6-2678 TCGA-AG-3599 TCGA-AG-3892 
       14.37         0.99         1.02 

$`ELF3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        1.02         2.01         1.02         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ELF3 MUTATED ELF3 WILD-TYPE 
          0.99           0.92 
  ELF3 MUTATED ELF3 WILD-TYPE 
         14.37          72.07 
  ELF3 MUTATED ELF3 WILD-TYPE 
          1.02          10.98 
[1] "1.0 - 14.4 (1.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ELF3 WILD-TYPE"   "ELF3 MUTATED" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" "ELF3 WILD-TYPE" 
[1] "hr="     "9200000"
D72V2, continuous
D72V3, binary
                cls
clus               0   1
  ELF3 MUTATED     3   3
  ELF3 WILD-TYPE 151  65
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      3    3
  ELF3 WILD-TYPE  151   65
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  COLON             3            151
  RECTUM            3             65
D72V4, binary
                cls
clus               0   1
  ELF3 MUTATED     2   4
  ELF3 WILD-TYPE 105 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  ELF3 MUTATED      2    4
  ELF3 WILD-TYPE  105  113
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  FEMALE            2            105
  MALE              4            113
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ELF3 MUTATED                      3                             0
  ELF3 WILD-TYPE                  125                            24
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ELF3 MUTATED                       2                              0
  ELF3 WILD-TYPE                    55                              8
D72V5, multiclass
                                clus
vv                               ELF3 MUTATED ELF3 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  ELF3 MUTATED     1   1   3   1
  ELF3 WILD-TYPE   8  46 147  16
D72V6, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            3            147
  T4            1             16
                vv
clus              N0  N1  N2
  ELF3 MUTATED     4   1   1
  ELF3 WILD-TYPE 130  43  45
D72V7, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  N0            4            130
  N1            1             43
  N2            1             45
                vv
clus              M0  M1 M1A
  ELF3 MUTATED     5   1   0
  ELF3 WILD-TYPE 184  30   1
D72V8, multiclass
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  ELF3 MUTATED    2  2   1  1
  ELF3 WILD-TYPE 46 80  59 28
D72V9, multiclass
     clus
vv    ELF3 MUTATED ELF3 WILD-TYPE
  I              2             46
  II             2             80
  III            1             59
  IV             1             28
                vv
clus              R0  R1  R2  RX
  ELF3 MUTATED     5   0   1   0
  ELF3 WILD-TYPE 183   2  26   1
D72V10, multiclass
    clus
vv   ELF3 MUTATED ELF3 WILD-TYPE
  R0            5            183
  R1            0              2
  R2            1             26
  RX            0              1
D72V11, continuous

Clustering(73) Variable = TRPS1 MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2              0  1
  TRPS1 MUTATED   11  1
  TRPS1 WILD-TYPE 95 13
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             12             108 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              1              13 
$`TRPS1 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02        13.94         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02Y TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A02N 
       35.01        35.01        39.95         1.02        20.94        61.94 

$`TRPS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99         0.99        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  TRPS1 MUTATED TRPS1 WILD-TYPE 
           0.99            0.92 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          61.94           72.07 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          17.44           10.77 
[1] "1.0 - 61.9 (17.4)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
[1] "hr=" "1.9"
D73V2, continuous
D73V3, binary
                 cls
clus                0   1
  TRPS1 MUTATED    13   4
  TRPS1 WILD-TYPE 141  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED     13    4
  TRPS1 WILD-TYPE  141   64
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON             13             141
  RECTUM             4              64
D73V4, binary
                 cls
clus                0   1
  TRPS1 MUTATED     7  10
  TRPS1 WILD-TYPE 100 107
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED      7   10
  TRPS1 WILD-TYPE  100  107
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  FEMALE             7             100
  MALE              10             107
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TRPS1 MUTATED                      9                             4
  TRPS1 WILD-TYPE                  119                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TRPS1 MUTATED                       3                              0
  TRPS1 WILD-TYPE                    54                              8
D73V5, multiclass
                                clus
vv                               TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  TRPS1 MUTATED     0   4   9   4
  TRPS1 WILD-TYPE   9  43 141  13
D73V6, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             4              13
                 vv
clus               N0  N1  N2
  TRPS1 MUTATED    15   1   1
  TRPS1 WILD-TYPE 119  43  45
D73V7, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  N0            15             119
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  TRPS1 MUTATED    16   0   0
  TRPS1 WILD-TYPE 173  31   1
D73V8, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  TRPS1 MUTATED    3 11   2  0
  TRPS1 WILD-TYPE 45 71  58 29
D73V9, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  I               3              45
  II             11              71
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  TRPS1 MUTATED    15   0   0   0
  TRPS1 WILD-TYPE 173   2  27   1
D73V10, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  R0            15             173
  R1             0               2
  R2             0              27
  RX             0               1
D73V11, continuous

Clustering(74) Variable = FAM133A MUTATION ANALYSIS
D74V1, survival
                   sevent
clus2                 0   1
  FAM133A MUTATED     4   0
  FAM133A WILD-TYPE 102  14
  FAM133A MUTATED FAM133A WILD-TYPE 
                4               116 
  FAM133A MUTATED FAM133A WILD-TYPE 
                0                14 
$`FAM133A MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3583 TCGA-AG-A02X 
        1.02        20.98         2.01        40.96 

$`FAM133A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FAM133A MUTATED FAM133A WILD-TYPE 
             1.02              0.92 
  FAM133A MUTATED FAM133A WILD-TYPE 
            40.96             72.07 
  FAM133A MUTATED FAM133A WILD-TYPE 
           11.495            10.950 
[1] "1.0 - 41.0 (11.5)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM133A WILD-TYPE"   "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
[1] "hr="     "2.6e+07"
D74V2, continuous
D74V3, binary
                   cls
clus                  0   1
  FAM133A MUTATED     5   2
  FAM133A WILD-TYPE 149  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      5    2
  FAM133A WILD-TYPE  149   66
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  COLON                5               149
  RECTUM               2                66
D74V4, binary
                   cls
clus                  0   1
  FAM133A MUTATED     4   3
  FAM133A WILD-TYPE 103 114
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      4    3
  FAM133A WILD-TYPE  103  114
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  FEMALE               4               103
  MALE                 3               114
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FAM133A MUTATED                      5                             0
  FAM133A WILD-TYPE                  123                            24
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FAM133A MUTATED                       1                              1
  FAM133A WILD-TYPE                    56                              7
D74V5, multiclass
                                clus
vv                               FAM133A MUTATED FAM133A WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
                   vv
clus                 T1  T2  T3  T4
  FAM133A MUTATED     0   2   4   1
  FAM133A WILD-TYPE   9  45 146  16
D74V6, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               4               146
  T4               1                16
                   vv
clus                 N0  N1  N2
  FAM133A MUTATED     5   1   1
  FAM133A WILD-TYPE 129  43  45
D74V7, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  N0               5               129
  N1               1                43
  N2               1                45
                   vv
clus                 M0  M1 M1A
  FAM133A MUTATED     5   1   0
  FAM133A WILD-TYPE 184  30   1
D74V8, multiclass
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  M0                5               184
  M1                1                30
  M1A               0                 1
                   vv
clus                 I II III IV
  FAM133A MUTATED    1  3   1  1
  FAM133A WILD-TYPE 47 79  59 28
D74V9, multiclass
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  I                 1                47
  II                3                79
  III               1                59
  IV                1                28
                   vv
clus                 R0  R1  R2  RX
  FAM133A MUTATED     5   0   1   0
  FAM133A WILD-TYPE 183   2  26   1
D74V10, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  R0               5               183
  R1               0                 2
  R2               1                26
  RX               0                 1
D74V11, continuous

Clustering(75) Variable = IL1RAPL2 MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                 0  1
  IL1RAPL2 MUTATED    7  0
  IL1RAPL2 WILD-TYPE 99 14
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                 7                113 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
                 0                 14 
$`IL1RAPL2 MUTATED`
TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-A00O TCGA-AA-A01K TCGA-AG-3887 TCGA-AG-3894 
        0.99         0.99        27.02        13.02         0.92         0.99 
TCGA-AG-A002 
       20.94 

$`IL1RAPL2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00         4.01        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3892 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
              0.92               0.92 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
             27.02              72.07 
  IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE 
              0.99              10.98 
[1] "0.9 - 27.0 (1.0)"  "0.9 - 72.1 (11.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"IL1RAPL2 WILD-TYPE"   "IL1RAPL2 MUTATED" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" "IL1RAPL2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D75V2, continuous
D75V3, binary
                    cls
clus                   0   1
  IL1RAPL2 MUTATED     5   5
  IL1RAPL2 WILD-TYPE 149  63
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      5    5
  IL1RAPL2 WILD-TYPE  149   63
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON                 5                149
  RECTUM                5                 63
D75V4, binary
                    cls
clus                   0   1
  IL1RAPL2 MUTATED     7   3
  IL1RAPL2 WILD-TYPE 100 114
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  IL1RAPL2 MUTATED      7    3
  IL1RAPL2 WILD-TYPE  100  114
        clus
vv       IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  FEMALE                7                100
  MALE                  3                114
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  IL1RAPL2 MUTATED                      3                             2
  IL1RAPL2 WILD-TYPE                  125                            22
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  IL1RAPL2 MUTATED                       3                              2
  IL1RAPL2 WILD-TYPE                    54                              6
D75V5, multiclass
                                clus
vv                               IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         3                 54
  RECTAL MUCINOUS ADENOCARCINOMA                2                  6
                    vv
clus                  T1  T2  T3  T4
  IL1RAPL2 MUTATED     0   1   8   1
  IL1RAPL2 WILD-TYPE   9  46 142  16
D75V6, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                8                142
  T4                1                 16
                    vv
clus                  N0  N1  N2
  IL1RAPL2 MUTATED     6   2   2
  IL1RAPL2 WILD-TYPE 128  42  44
D75V7, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  N0                6                128
  N1                2                 42
  N2                2                 44
                    vv
clus                  M0  M1 M1A
  IL1RAPL2 MUTATED    10   0   0
  IL1RAPL2 WILD-TYPE 179  31   1
D75V8, multiclass
     clus
vv    IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  M0                10                179
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  IL1RAPL2 MUTATED    1  5   4  0
  IL1RAPL2 WILD-TYPE 47 77  56 29
D75V9, multiclass
     clus
vv    IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  I                  1                 47
  II                 5                 77
  III                4                 56
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  IL1RAPL2 MUTATED    10   0   0   0
  IL1RAPL2 WILD-TYPE 178   2  27   1
D75V10, multiclass
    clus
vv   IL1RAPL2 MUTATED IL1RAPL2 WILD-TYPE
  R0               10                178
  R1                0                  2
  R2                0                 27
  RX                0                  1
D75V11, continuous

Clustering(76) Variable = CCBP2 MUTATION ANALYSIS
D76V1, survival
                 sevent
clus2               0   1
  CCBP2 MUTATED     5   0
  CCBP2 WILD-TYPE 101  14
  CCBP2 MUTATED CCBP2 WILD-TYPE 
              5             115 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
              0              14 
$`CCBP2 MUTATED`
TCGA-AA-3710 TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H 
        1.02         1.02        20.94        13.91        25.94 

$`CCBP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
        1.02         1.02         6.02        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CCBP2 MUTATED CCBP2 WILD-TYPE 
           1.02            0.92 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
          25.94           72.07 
  CCBP2 MUTATED CCBP2 WILD-TYPE 
          13.91           10.92 
[1] "1.0 - 25.9 (13.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CCBP2 WILD-TYPE"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CCBP2 MUTATED"   "CCBP2 MUTATED" "CCBP2 WILD-TYPE"   "CCBP2 MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" "CCBP2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D76V2, continuous
D76V3, binary
                 cls
clus                0   1
  CCBP2 MUTATED     5   5
  CCBP2 WILD-TYPE 149  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      5    5
  CCBP2 WILD-TYPE  149   63
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON              5             149
  RECTUM             5              63
D76V4, binary
                 cls
clus                0   1
  CCBP2 MUTATED     6   4
  CCBP2 WILD-TYPE 101 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CCBP2 MUTATED      6    4
  CCBP2 WILD-TYPE  101  113
        clus
vv       CCBP2 MUTATED CCBP2 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CCBP2 MUTATED                      3                             1
  CCBP2 WILD-TYPE                  125                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CCBP2 MUTATED                       4                              1
  CCBP2 WILD-TYPE                    53                              7
D76V5, multiclass
                                clus
vv                               CCBP2 MUTATED CCBP2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  CCBP2 MUTATED     1   4   5   0
  CCBP2 WILD-TYPE   8  43 145  17
D76V6, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  T1             1               8
  T2             4              43
  T3             5             145
  T4             0              17
                 vv
clus               N0  N1  N2
  CCBP2 MUTATED     8   2   0
  CCBP2 WILD-TYPE 126  42  46
D76V7, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             0              46
                 vv
clus               M0  M1 M1A
  CCBP2 MUTATED     9   1   0
  CCBP2 WILD-TYPE 180  30   1
D76V8, multiclass
     clus
vv    CCBP2 MUTATED CCBP2 WILD-TYPE
  M0              9             180
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  CCBP2 MUTATED    4  4   1  1
  CCBP2 WILD-TYPE 44 78  59 28
D76V9, multiclass
     clus
vv    CCBP2 MUTATED CCBP2 WILD-TYPE
  I               4              44
  II              4              78
  III             1              59
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  CCBP2 MUTATED     9   0   1   0
  CCBP2 WILD-TYPE 179   2  26   1
D76V10, multiclass
    clus
vv   CCBP2 MUTATED CCBP2 WILD-TYPE
  R0             9             179
  R1             0               2
  R2             1              26
  RX             0               1
D76V11, continuous

Clustering(77) Variable = OPCML MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  OPCML MUTATED    8  0
  OPCML WILD-TYPE 98 14
  OPCML MUTATED OPCML WILD-TYPE 
              8             112 
  OPCML MUTATED OPCML WILD-TYPE 
              0              14 
$`OPCML MUTATED`
TCGA-AA-3844 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-A002 
        0.92         0.99         1.02        20.98         1.02        20.94 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

$`OPCML WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A036 
        1.94        38.93        61.94        72.07 

  OPCML MUTATED OPCML WILD-TYPE 
           0.92            0.92 
  OPCML MUTATED OPCML WILD-TYPE 
          40.96           72.07 
  OPCML MUTATED OPCML WILD-TYPE 
          10.98           10.95 
[1] "0.9 - 41.0 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE"   "OPCML MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OPCML WILD-TYPE"   "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "OPCML MUTATED" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" "OPCML WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OPCML WILD-TYPE"   "OPCML MUTATED"   "OPCML MUTATED" "OPCML WILD-TYPE" 
[1] "hr="     "7.4e+07"
D77V2, continuous
D77V3, binary
                 cls
clus                0   1
  OPCML MUTATED     4   6
  OPCML WILD-TYPE 150  62
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      4    6
  OPCML WILD-TYPE  150   62
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  COLON              4             150
  RECTUM             6              62
D77V4, binary
                 cls
clus                0   1
  OPCML MUTATED     5   5
  OPCML WILD-TYPE 102 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OPCML MUTATED      5    5
  OPCML WILD-TYPE  102  112
        clus
vv       OPCML MUTATED OPCML WILD-TYPE
  FEMALE             5             102
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OPCML MUTATED                      3                             1
  OPCML WILD-TYPE                  125                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OPCML MUTATED                       6                              0
  OPCML WILD-TYPE                    51                              8
D77V5, multiclass
                                clus
vv                               OPCML MUTATED OPCML WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      6              51
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  OPCML MUTATED     0   4   5   1
  OPCML WILD-TYPE   9  43 145  16
D77V6, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             1              16
                 vv
clus               N0  N1  N2
  OPCML MUTATED     6   2   2
  OPCML WILD-TYPE 128  42  44
D77V7, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  N0             6             128
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  OPCML MUTATED     8   1   0
  OPCML WILD-TYPE 181  30   1
D77V8, multiclass
     clus
vv    OPCML MUTATED OPCML WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  OPCML MUTATED    3  2   3  1
  OPCML WILD-TYPE 45 80  57 28
D77V9, multiclass
     clus
vv    OPCML MUTATED OPCML WILD-TYPE
  I               3              45
  II              2              80
  III             3              57
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  OPCML MUTATED     9   0   0   0
  OPCML WILD-TYPE 179   2  27   1
D77V10, multiclass
    clus
vv   OPCML MUTATED OPCML WILD-TYPE
  R0             9             179
  R1             0               2
  R2             0              27
  RX             0               1
D77V11, continuous

Clustering(78) Variable = CDH18 MUTATION ANALYSIS
D78V1, survival
                 sevent
clus2              0  1
  CDH18 MUTATED    9  2
  CDH18 WILD-TYPE 97 12
  CDH18 MUTATED CDH18 WILD-TYPE 
             11             109 
  CDH18 MUTATED CDH18 WILD-TYPE 
              2              12 
$`CDH18 MUTATED`
TCGA-A6-2672 TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00N 
       16.54        10.92         1.02         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02J TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A032 
       20.98         5.03        20.94        61.94        38.01 

$`CDH18 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A036 
       72.07 

  CDH18 MUTATED CDH18 WILD-TYPE 
           0.99            0.92 
  CDH18 MUTATED CDH18 WILD-TYPE 
          61.94           72.07 
  CDH18 MUTATED CDH18 WILD-TYPE 
          10.92           10.98 
[1] "1.0 - 61.9 (10.9)" "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CDH18 MUTATED" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
[1] "hr=" "1.5"
D78V2, continuous
D78V3, binary
                 cls
clus                0   1
  CDH18 MUTATED    10   3
  CDH18 WILD-TYPE 144  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED     10    3
  CDH18 WILD-TYPE  144   65
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D78V4, binary
                 cls
clus                0   1
  CDH18 MUTATED     8   5
  CDH18 WILD-TYPE  99 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      8    5
  CDH18 WILD-TYPE   99  112
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE             8              99
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CDH18 MUTATED                      8                             2
  CDH18 WILD-TYPE                  120                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CDH18 MUTATED                       3                              0
  CDH18 WILD-TYPE                    54                              8
D78V5, multiclass
                                clus
vv                               CDH18 MUTATED CDH18 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CDH18 MUTATED     0   2   8   3
  CDH18 WILD-TYPE   9  45 142  14
D78V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             8             142
  T4             3              14
                 vv
clus               N0  N1  N2
  CDH18 MUTATED    10   2   1
  CDH18 WILD-TYPE 124  42  45
D78V7, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  CDH18 MUTATED    12   1   0
  CDH18 WILD-TYPE 177  30   1
D78V8, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  CDH18 MUTATED    2  7   3  1
  CDH18 WILD-TYPE 46 75  57 28
D78V9, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  I               2              46
  II              7              75
  III             3              57
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  CDH18 MUTATED    12   0   1   0
  CDH18 WILD-TYPE 176   2  26   1
D78V10, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             1              26
  RX             0               1
D78V11, continuous

Clustering(79) Variable = OR2L13 MUTATION ANALYSIS
D79V1, survival
                  sevent
clus2                0   1
  OR2L13 MUTATED     3   1
  OR2L13 WILD-TYPE 103  13
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               4              116 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               1               13 
$`OR2L13 MUTATED`
TCGA-AA-3710 TCGA-AG-A002 TCGA-AG-A026 TCGA-AG-A02N 
        1.02        20.94         1.94        61.94 

$`OR2L13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02X 
       70.03        63.98        10.98        49.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR2L13 MUTATED OR2L13 WILD-TYPE 
            1.02             0.92 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
           61.94            72.07 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
           11.44            10.95 
[1] "1.0 - 61.9 (11.4)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
[1] "hr=" "1.6"
D79V2, continuous
D79V3, binary
                  cls
clus                 0   1
  OR2L13 MUTATED     7   3
  OR2L13 WILD-TYPE 147  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      7    3
  OR2L13 WILD-TYPE  147   65
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D79V4, binary
                  cls
clus                 0   1
  OR2L13 MUTATED     4   6
  OR2L13 WILD-TYPE 103 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      4    6
  OR2L13 WILD-TYPE  103  111
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  FEMALE              4              103
  MALE                6              111
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR2L13 MUTATED                      6                             1
  OR2L13 WILD-TYPE                  122                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR2L13 MUTATED                       3                              0
  OR2L13 WILD-TYPE                    54                              8
D79V5, multiclass
                                clus
vv                               OR2L13 MUTATED OR2L13 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  OR2L13 MUTATED     0   2   7   1
  OR2L13 WILD-TYPE   9  45 143  16
D79V6, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              7              143
  T4              1               16
                  vv
clus                N0  N1  N2
  OR2L13 MUTATED     8   1   1
  OR2L13 WILD-TYPE 126  43  45
D79V7, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              1               45
                  vv
clus                M0  M1 M1A
  OR2L13 MUTATED     9   1   0
  OR2L13 WILD-TYPE 180  30   1
D79V8, multiclass
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  OR2L13 MUTATED    2  6   1  1
  OR2L13 WILD-TYPE 46 76  59 28
D79V9, multiclass
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  I                2               46
  II               6               76
  III              1               59
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  OR2L13 MUTATED     8   1   1   0
  OR2L13 WILD-TYPE 180   1  26   1
D79V10, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  R0              8              180
  R1              1                1
  R2              1               26
  RX              0                1
D79V11, continuous

Clustering(80) Variable = LRRN3 MUTATION ANALYSIS
D80V1, survival
                 sevent
clus2              0  1
  LRRN3 MUTATED    7  1
  LRRN3 WILD-TYPE 99 13
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              8             112 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              1              13 
$`LRRN3 MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3941 TCGA-AA-A00E TCGA-AA-A00R TCGA-AA-A01P 
       10.92         0.99         1.02        30.02         0.99        38.07 
TCGA-AA-A01R TCGA-AG-A00C 
       35.01         6.02 

$`LRRN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02        27.02        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H 
        1.02         1.02         1.02        20.94        13.91        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  LRRN3 MUTATED LRRN3 WILD-TYPE 
           0.99            0.92 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
          38.07           72.07 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
           8.47           11.49 
[1] "1.0 - 38.1 (8.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
D80V3, binary
                 cls
clus                0   1
  LRRN3 MUTATED     9   1
  LRRN3 WILD-TYPE 145  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      9    1
  LRRN3 WILD-TYPE  145   67
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON              9             145
  RECTUM             1              67
D80V4, binary
                 cls
clus                0   1
  LRRN3 MUTATED     6   4
  LRRN3 WILD-TYPE 101 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      6    4
  LRRN3 WILD-TYPE  101  113
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LRRN3 MUTATED                      8                             1
  LRRN3 WILD-TYPE                  120                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LRRN3 MUTATED                       1                              0
  LRRN3 WILD-TYPE                    56                              8
D80V5, multiclass
                                clus
vv                               LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  LRRN3 MUTATED     0   1   7   2
  LRRN3 WILD-TYPE   9  46 143  15
D80V6, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             7             143
  T4             2              15
                 vv
clus               N0  N1  N2
  LRRN3 MUTATED     3   4   3
  LRRN3 WILD-TYPE 131  40  43
D80V7, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  N0             3             131
  N1             4              40
  N2             3              43
                 vv
clus               M0  M1 M1A
  LRRN3 MUTATED     8   1   1
  LRRN3 WILD-TYPE 181  30   0
D80V8, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             1               0
                 vv
clus               I II III IV
  LRRN3 MUTATED    1  2   5  2
  LRRN3 WILD-TYPE 47 80  55 27
D80V9, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  I               1              47
  II              2              80
  III             5              55
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  LRRN3 MUTATED     9   0   1   0
  LRRN3 WILD-TYPE 179   2  26   1
D80V10, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  R0             9             179
  R1             0               2
  R2             1              26
  RX             0               1
D80V11, continuous

Clustering(81) Variable = BAI3 MUTATION ANALYSIS
D81V1, survival
                sevent
clus2             0  1
  BAI3 MUTATED   10  1
  BAI3 WILD-TYPE 96 13
  BAI3 MUTATED BAI3 WILD-TYPE 
            11            109 
  BAI3 MUTATED BAI3 WILD-TYPE 
             1             13 
$`BAI3 MUTATED`
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         0.99         4.01        20.98 
TCGA-AA-A01G TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A02N 
       12.00         1.02        20.94        23.01        61.94 

$`BAI3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         1.02         1.02 
TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A011 
        1.02         1.02        13.91         6.02        25.94        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  BAI3 MUTATED BAI3 WILD-TYPE 
          0.99           0.92 
  BAI3 MUTATED BAI3 WILD-TYPE 
         61.94          72.07 
  BAI3 MUTATED BAI3 WILD-TYPE 
          4.01          10.98 
[1] "1.0 - 61.9 (4.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
[1] "hr=" "1.2"
D81V2, continuous
D81V3, binary
                cls
clus               0   1
  BAI3 MUTATED    12   6
  BAI3 WILD-TYPE 142  62
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED     12    6
  BAI3 WILD-TYPE  142   62
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  COLON            12            142
  RECTUM            6             62
D81V4, binary
                cls
clus               0   1
  BAI3 MUTATED     9   9
  BAI3 WILD-TYPE  98 108
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED      9    9
  BAI3 WILD-TYPE   98  108
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  FEMALE            9             98
  MALE              9            108
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  BAI3 MUTATED                      7                             5
  BAI3 WILD-TYPE                  121                            19
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  BAI3 MUTATED                       6                              0
  BAI3 WILD-TYPE                    51                              8
D81V5, multiclass
                                clus
vv                               BAI3 MUTATED BAI3 WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             5             19
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  BAI3 MUTATED     1   4   9   4
  BAI3 WILD-TYPE   8  43 141  13
D81V6, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            9            141
  T4            4             13
                vv
clus              N0  N1  N2
  BAI3 MUTATED    15   1   2
  BAI3 WILD-TYPE 119  43  44
D81V7, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  N0           15            119
  N1            1             43
  N2            2             44
                vv
clus              M0  M1 M1A
  BAI3 MUTATED    16   2   0
  BAI3 WILD-TYPE 173  29   1
D81V8, multiclass
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  M0            16            173
  M1             2             29
  M1A            0              1
                vv
clus              I II III IV
  BAI3 MUTATED    5 10   1  2
  BAI3 WILD-TYPE 43 72  59 27
D81V9, multiclass
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  I              5             43
  II            10             72
  III            1             59
  IV             2             27
                vv
clus              R0  R1  R2  RX
  BAI3 MUTATED    16   0   2   0
  BAI3 WILD-TYPE 172   2  25   1
D81V10, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  R0           16            172
  R1            0              2
  R2            2             25
  RX            0              1
D81V11, continuous

Clustering(82) Variable = MGC42105 MUTATION ANALYSIS
D82V1, survival
                    sevent
clus2                 0  1
  MGC42105 MUTATED    7  0
  MGC42105 WILD-TYPE 99 14
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 7                113 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 0                 14 
$`MGC42105 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3842 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3977 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AG-A002 
       20.94 

$`MGC42105 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  MGC42105 MUTATED MGC42105 WILD-TYPE 
              0.99               0.92 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
             20.94              72.07 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
              1.02              12.00 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D82V2, continuous
D82V3, binary
                    cls
clus                   0   1
  MGC42105 MUTATED    10   1
  MGC42105 WILD-TYPE 144  67
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED     10    1
  MGC42105 WILD-TYPE  144   67
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON                10                144
  RECTUM                1                 67
D82V4, binary
                    cls
clus                   0   1
  MGC42105 MUTATED     6   5
  MGC42105 WILD-TYPE 101 112
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      6    5
  MGC42105 WILD-TYPE  101  112
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  FEMALE                6                101
  MALE                  5                112
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  MGC42105 MUTATED                      8                             2
  MGC42105 WILD-TYPE                  120                            22
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  MGC42105 MUTATED                       1                              0
  MGC42105 WILD-TYPE                    56                              8
D82V5, multiclass
                                clus
vv                               MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON ADENOCARCINOMA                          8                120
  COLON MUCINOUS ADENOCARCINOMA                 2                 22
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  MGC42105 MUTATED     1   4   6   0
  MGC42105 WILD-TYPE   8  43 144  17
D82V6, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  T1                1                  8
  T2                4                 43
  T3                6                144
  T4                0                 17
                    vv
clus                  N0  N1  N2
  MGC42105 MUTATED     9   1   1
  MGC42105 WILD-TYPE 125  43  45
D82V7, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  N0                9                125
  N1                1                 43
  N2                1                 45
                    vv
clus                  M0  M1 M1A
  MGC42105 MUTATED     9   0   0
  MGC42105 WILD-TYPE 180  31   1
D82V8, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  M0                 9                180
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  MGC42105 MUTATED    2  5   2  0
  MGC42105 WILD-TYPE 46 77  58 29
D82V9, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  I                  2                 46
  II                 5                 77
  III                2                 58
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  MGC42105 MUTATED     9   0   1   0
  MGC42105 WILD-TYPE 179   2  26   1
D82V10, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  R0                9                179
  R1                0                  2
  R2                1                 26
  RX                0                  1
D82V11, continuous

Clustering(83) Variable = TXNDC3 MUTATION ANALYSIS
D83V1, survival
                  sevent
clus2                0   1
  TXNDC3 MUTATED     6   0
  TXNDC3 WILD-TYPE 100  14
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               6              114 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               0               14 
$`TXNDC3 MUTATED`
TCGA-AA-3811 TCGA-AA-A00D TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01Z TCGA-AG-3892 
        0.99        19.00        21.99        20.98        20.98         1.02 

$`TXNDC3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
            0.99             0.92 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           21.99            72.07 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           19.99            10.77 
[1] "1.0 - 22.0 (20.0)" "0.9 - 72.1 (10.8)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D83V2, continuous
D83V3, binary
                  cls
clus                 0   1
  TXNDC3 MUTATED    10   1
  TXNDC3 WILD-TYPE 144  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED     10    1
  TXNDC3 WILD-TYPE  144   67
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON              10              144
  RECTUM              1               67
D83V4, binary
                  cls
clus                 0   1
  TXNDC3 MUTATED     7   4
  TXNDC3 WILD-TYPE 100 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      7    4
  TXNDC3 WILD-TYPE  100  113
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  FEMALE              7              100
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TXNDC3 MUTATED                      8                             2
  TXNDC3 WILD-TYPE                  120                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TXNDC3 MUTATED                       1                              0
  TXNDC3 WILD-TYPE                    56                              8
D83V5, multiclass
                                clus
vv                               TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  TXNDC3 MUTATED     1   2   7   1
  TXNDC3 WILD-TYPE   8  45 143  16
D83V6, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              7              143
  T4              1               16
                  vv
clus                N0  N1  N2
  TXNDC3 MUTATED     8   1   2
  TXNDC3 WILD-TYPE 126  43  44
D83V7, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  N0              8              126
  N1              1               43
  N2              2               44
                  vv
clus                M0  M1 M1A
  TXNDC3 MUTATED    11   0   0
  TXNDC3 WILD-TYPE 178  31   1
D83V8, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  TXNDC3 MUTATED    3  5   3  0
  TXNDC3 WILD-TYPE 45 77  57 29
D83V9, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  I                3               45
  II               5               77
  III              3               57
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  TXNDC3 MUTATED    10   0   0   0
  TXNDC3 WILD-TYPE 178   2  27   1
D83V10, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  R0             10              178
  R1              0                2
  R2              0               27
  RX              0                1
D83V11, continuous

Clustering(84) Variable = LPPR4 MUTATION ANALYSIS
D84V1, survival
                 sevent
clus2              0  1
  LPPR4 MUTATED    7  0
  LPPR4 WILD-TYPE 99 14
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              7             113 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              0              14 
$`LPPR4 MUTATED`
TCGA-AA-3710 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A01Q TCGA-AG-3599 
        1.02         0.99         1.02         1.02         1.02         0.99 
TCGA-AG-3892 
        1.02 

$`LPPR4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 
       10.39         1.02         1.02         2.01         1.02         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  LPPR4 MUTATED LPPR4 WILD-TYPE 
           0.99            0.92 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           72.07 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
[1] "hr="     "9800000"
D84V2, continuous
D84V3, binary
                 cls
clus                0   1
  LPPR4 MUTATED    11   2
  LPPR4 WILD-TYPE 143  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED     11    2
  LPPR4 WILD-TYPE  143   66
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON             11             143
  RECTUM             2              66
D84V4, binary
                 cls
clus                0   1
  LPPR4 MUTATED     7   6
  LPPR4 WILD-TYPE 100 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      7    6
  LPPR4 WILD-TYPE  100  111
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LPPR4 MUTATED                      9                             2
  LPPR4 WILD-TYPE                  119                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LPPR4 MUTATED                       1                              0
  LPPR4 WILD-TYPE                    56                              8
D84V5, multiclass
                                clus
vv                               LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  LPPR4 MUTATED     2   3   7   1
  LPPR4 WILD-TYPE   7  44 143  16
D84V6, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  T1             2               7
  T2             3              44
  T3             7             143
  T4             1              16
                 vv
clus               N0  N1  N2
  LPPR4 MUTATED     8   5   0
  LPPR4 WILD-TYPE 126  39  46
D84V7, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  N0             8             126
  N1             5              39
  N2             0              46
                 vv
clus               M0  M1 M1A
  LPPR4 MUTATED    11   1   0
  LPPR4 WILD-TYPE 178  30   1
D84V8, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  LPPR4 MUTATED    3  4   4  1
  LPPR4 WILD-TYPE 45 78  56 28
D84V9, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  I               3              45
  II              4              78
  III             4              56
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  LPPR4 MUTATED    10   0   1   0
  LPPR4 WILD-TYPE 178   2  26   1
D84V10, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             1              26
  RX             0               1
D84V11, continuous

Clustering(85) Variable = UNC13C MUTATION ANALYSIS
D85V1, survival
                  sevent
clus2               0  1
  UNC13C MUTATED    9  1
  UNC13C WILD-TYPE 97 13
  UNC13C MUTATED UNC13C WILD-TYPE 
              10              110 
  UNC13C MUTATED UNC13C WILD-TYPE 
               1               13 
$`UNC13C MUTATED`
TCGA-A6-3810 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A010 
        8.09         0.99         1.02         0.99         4.01        20.98 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N TCGA-AG-A036 
        1.02        20.94        61.94        72.07 

$`UNC13C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

  UNC13C MUTATED UNC13C WILD-TYPE 
            0.99             0.92 
  UNC13C MUTATED UNC13C WILD-TYPE 
           72.07            70.03 
  UNC13C MUTATED UNC13C WILD-TYPE 
            6.05            11.49 
[1] "1.0 - 72.1 (6.0)"  "0.9 - 70.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
[1] "hr=" "1.5"
D85V2, continuous
D85V3, binary
                  cls
clus                 0   1
  UNC13C MUTATED    12   5
  UNC13C WILD-TYPE 142  63
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED     12    5
  UNC13C WILD-TYPE  142   63
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  COLON              12              142
  RECTUM              5               63
D85V4, binary
                  cls
clus                 0   1
  UNC13C MUTATED    11   6
  UNC13C WILD-TYPE  96 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED     11    6
  UNC13C WILD-TYPE   96  111
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  FEMALE             11               96
  MALE                6              111
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  UNC13C MUTATED                      8                             3
  UNC13C WILD-TYPE                  120                            21
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  UNC13C MUTATED                       5                              0
  UNC13C WILD-TYPE                    52                              8
D85V5, multiclass
                                clus
vv                               UNC13C MUTATED UNC13C WILD-TYPE
  COLON ADENOCARCINOMA                        8              120
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       5               52
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  UNC13C MUTATED     2   3   9   3
  UNC13C WILD-TYPE   7  44 141  14
D85V6, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  T1              2                7
  T2              3               44
  T3              9              141
  T4              3               14
                  vv
clus                N0  N1  N2
  UNC13C MUTATED    14   1   2
  UNC13C WILD-TYPE 120  43  44
D85V7, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  N0             14              120
  N1              1               43
  N2              2               44
                  vv
clus                M0  M1 M1A
  UNC13C MUTATED    16   1   0
  UNC13C WILD-TYPE 173  30   1
D85V8, multiclass
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  M0              16              173
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  UNC13C MUTATED    5  9   2  1
  UNC13C WILD-TYPE 43 73  58 28
D85V9, multiclass
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  I                5               43
  II               9               73
  III              2               58
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  UNC13C MUTATED    16   0   1   0
  UNC13C WILD-TYPE 172   2  26   1
D85V10, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  R0             16              172
  R1              0                2
  R2              1               26
  RX              0                1
D85V11, continuous

Clustering(86) Variable = SCN7A MUTATION ANALYSIS
D86V1, survival
                 sevent
clus2              0  1
  SCN7A MUTATED    9  1
  SCN7A WILD-TYPE 97 13
  SCN7A MUTATED SCN7A WILD-TYPE 
             10             110 
  SCN7A MUTATED SCN7A WILD-TYPE 
              1              13 
$`SCN7A MUTATED`
TCGA-A6-3810 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N 
        8.09         0.99         0.99         1.02         1.02         4.01 
TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-4007 TCGA-AG-A002 
       20.98         1.02         1.02        20.94 

$`SCN7A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  SCN7A MUTATED SCN7A WILD-TYPE 
           0.99            0.92 
  SCN7A MUTATED SCN7A WILD-TYPE 
          20.98           72.07 
  SCN7A MUTATED SCN7A WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
[1] "hr=" "1.5"
D86V2, continuous
D86V3, binary
                 cls
clus                0   1
  SCN7A MUTATED    12   3
  SCN7A WILD-TYPE 142  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED     12    3
  SCN7A WILD-TYPE  142   65
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  COLON             12             142
  RECTUM             3              65
D86V4, binary
                 cls
clus                0   1
  SCN7A MUTATED     8   7
  SCN7A WILD-TYPE  99 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      8    7
  SCN7A WILD-TYPE   99  110
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  FEMALE             8              99
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SCN7A MUTATED                      8                             3
  SCN7A WILD-TYPE                  120                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SCN7A MUTATED                       3                              0
  SCN7A WILD-TYPE                    54                              8
D86V5, multiclass
                                clus
vv                               SCN7A MUTATED SCN7A WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  SCN7A MUTATED     1   2   7   5
  SCN7A WILD-TYPE   8  45 143  12
D86V6, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  T1             1               8
  T2             2              45
  T3             7             143
  T4             5              12
                 vv
clus               N0  N1  N2
  SCN7A MUTATED    12   0   3
  SCN7A WILD-TYPE 122  44  43
D86V7, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  N0            12             122
  N1             0              44
  N2             3              43
                 vv
clus               M0  M1 M1A
  SCN7A MUTATED    12   2   0
  SCN7A WILD-TYPE 177  29   1
D86V8, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  SCN7A MUTATED    2  9   1  2
  SCN7A WILD-TYPE 46 73  59 27
D86V9, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  I               2              46
  II              9              73
  III             1              59
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  SCN7A MUTATED    11   0   2   0
  SCN7A WILD-TYPE 177   2  25   1
D86V10, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  R0            11             177
  R1             0               2
  R2             2              25
  RX             0               1
D86V11, continuous

Clustering(87) Variable = ACOT4 MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2               0   1
  ACOT4 MUTATED     2   0
  ACOT4 WILD-TYPE 104  14
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              2             118 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              0              14 
$`ACOT4 MUTATED`
TCGA-AA-3877 TCGA-AA-3939 
        0.99         0.99 

$`ACOT4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ACOT4 MUTATED ACOT4 WILD-TYPE 
           0.99            0.92 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
           0.99           72.07 
  ACOT4 MUTATED ACOT4 WILD-TYPE 
           0.99           11.49 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE"   "ACOT4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "ACOT4 MUTATED" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
[1] "Remove cluster labels:" "ACOT4 MUTATED"         
clus
  ACOT4 MUTATED ACOT4 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3941 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952      TCGA-AA-3966 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986      TCGA-AA-A004 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E      TCGA-AA-A00F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L      TCGA-AA-A00N 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R      TCGA-AA-A00U 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010      TCGA-AA-A017 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"ACOT4 WILD-TYPE" "ACOT4 WILD-TYPE" 
D87V2, continuous
D87V3, binary
                 cls
clus                0   1
  ACOT4 MUTATED     3   0
  ACOT4 WILD-TYPE 151  68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      3    0
  ACOT4 WILD-TYPE  151   68
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  COLON              3             151
  RECTUM             0              68
D87V4, binary
                 cls
clus                0   1
  ACOT4 MUTATED     1   2
  ACOT4 WILD-TYPE 106 115
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACOT4 MUTATED      1    2
  ACOT4 WILD-TYPE  106  115
        clus
vv       ACOT4 MUTATED ACOT4 WILD-TYPE
  FEMALE             1             106
  MALE               2             115
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ACOT4 MUTATED                      2                             1
  ACOT4 WILD-TYPE                  126                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ACOT4 MUTATED                       0                              0
  ACOT4 WILD-TYPE                    57                              8
D87V5, multiclass
                                clus
vv                               ACOT4 MUTATED ACOT4 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ACOT4 MUTATED     1   0   1   1
  ACOT4 WILD-TYPE   8  47 149  16
D87V6, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             1             149
  T4             1              16
                 vv
clus               N0  N1  N2
  ACOT4 MUTATED     2   0   1
  ACOT4 WILD-TYPE 132  44  45
D87V7, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  N0             2             132
  N1             0              44
  N2             1              45
                 vv
clus               M0  M1 M1A
  ACOT4 MUTATED     2   1   0
  ACOT4 WILD-TYPE 187  30   1
D87V8, multiclass
     clus
vv    ACOT4 MUTATED ACOT4 WILD-TYPE
  M0              2             187
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  ACOT4 MUTATED    1  1   0  1
  ACOT4 WILD-TYPE 47 81  60 28
D87V9, multiclass
     clus
vv    ACOT4 MUTATED ACOT4 WILD-TYPE
  I               1              47
  II              1              81
  III             0              60
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  ACOT4 MUTATED     2   0   1   0
  ACOT4 WILD-TYPE 186   2  26   1
D87V10, multiclass
    clus
vv   ACOT4 MUTATED ACOT4 WILD-TYPE
  R0             2             186
  R1             0               2
  R2             1              26
  RX             0               1
D87V11, continuous

Clustering(88) Variable = GGT1 MUTATION ANALYSIS
D88V1, survival
                sevent
clus2              0   1
  GGT1 MUTATED     1   0
  GGT1 WILD-TYPE 105  14
  GGT1 MUTATED GGT1 WILD-TYPE 
             1            119 
  GGT1 MUTATED GGT1 WILD-TYPE 
             0             14 
$`GGT1 MUTATED`
TCGA-AA-A01V 
       35.01 

$`GGT1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z 
        1.02        35.01         1.02        33.04        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  GGT1 MUTATED GGT1 WILD-TYPE 
         35.01           0.92 
  GGT1 MUTATED GGT1 WILD-TYPE 
         35.01          72.07 
  GGT1 MUTATED GGT1 WILD-TYPE 
         35.01          10.92 
[1] "35.0 - 35.0 (35.0)" "0.9 - 72.1 (10.9)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "GGT1 MUTATED" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             1            119 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
D88V2, continuous
D88V3, binary
                cls
clus               0   1
  GGT1 MUTATED     3   0
  GGT1 WILD-TYPE 151  68
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      3    0
  GGT1 WILD-TYPE  151   68
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  COLON             3            151
  RECTUM            0             68
D88V4, binary
                cls
clus               0   1
  GGT1 MUTATED     2   1
  GGT1 WILD-TYPE 105 116
[1] "tbl2"
                cls
clus             [,1] [,2]
  GGT1 MUTATED      2    1
  GGT1 WILD-TYPE  105  116
        clus
vv       GGT1 MUTATED GGT1 WILD-TYPE
  FEMALE            2            105
  MALE              1            116
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GGT1 MUTATED                      2                             0
  GGT1 WILD-TYPE                  126                            24
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GGT1 MUTATED                       0                              0
  GGT1 WILD-TYPE                    57                              8
D88V5, multiclass
[1] "Remove cluster labels:" "GGT1 MUTATED"          
clus
  GGT1 MUTATED GGT1 WILD-TYPE 
             2            215 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3514     TCGA-AA-3516 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3517     TCGA-AA-3518     TCGA-AA-3519     TCGA-AA-3520 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3521     TCGA-AA-3522     TCGA-AA-3524     TCGA-AA-3525 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3526     TCGA-AA-3527     TCGA-AA-3529     TCGA-AA-3530 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3531     TCGA-AA-3532     TCGA-AA-3534     TCGA-AA-3538 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3542     TCGA-AA-3543     TCGA-AA-3544     TCGA-AA-3548 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3549     TCGA-AA-3552     TCGA-AA-3553     TCGA-AA-3554 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3558     TCGA-AA-3560     TCGA-AA-3561 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3664     TCGA-AA-3666     TCGA-AA-3667 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3672     TCGA-AA-3673     TCGA-AA-3678     TCGA-AA-3679 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3680     TCGA-AA-3681     TCGA-AA-3684     TCGA-AA-3685 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3688     TCGA-AA-3692     TCGA-AA-3693     TCGA-AA-3695 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3696     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3812     TCGA-AA-3814     TCGA-AA-3818     TCGA-AA-3819 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3821     TCGA-AA-3831     TCGA-AA-3833     TCGA-AA-3837 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846     TCGA-AA-3848 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3850     TCGA-AA-3851     TCGA-AA-3852     TCGA-AA-3854 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3855     TCGA-AA-3856     TCGA-AA-3858     TCGA-AA-3860 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3864     TCGA-AA-3866     TCGA-AA-3867     TCGA-AA-3869 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3870     TCGA-AA-3872     TCGA-AA-3875     TCGA-AA-3877 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3930     TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3949     TCGA-AA-3952     TCGA-AA-3955     TCGA-AA-3956 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3971     TCGA-AA-3972     TCGA-AA-3973 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3976     TCGA-AA-3977     TCGA-AA-3979 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3980     TCGA-AA-3982     TCGA-AA-3986     TCGA-AA-3989 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-3994     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A022     TCGA-AA-A024 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AF-2689     TCGA-AF-2691 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3574     TCGA-AG-3575 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3578     TCGA-AG-3580     TCGA-AG-3581     TCGA-AG-3582 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3584     TCGA-AG-3587     TCGA-AG-3593 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3594     TCGA-AG-3598     TCGA-AG-3600     TCGA-AG-3601 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3602     TCGA-AG-3605     TCGA-AG-3608     TCGA-AG-3609 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3611     TCGA-AG-3612     TCGA-AG-3726     TCGA-AG-3727 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3878     TCGA-AG-3882     TCGA-AG-3883     TCGA-AG-3887 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3890     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3896     TCGA-AG-3898     TCGA-AG-3901     TCGA-AG-3902 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-3909     TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4005 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-4015     TCGA-AG-A002 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"GGT1 WILD-TYPE" "GGT1 WILD-TYPE" "GGT1 WILD-TYPE" 
                vv
clus              T1  T2  T3  T4
  GGT1 MUTATED     0   1   2   0
  GGT1 WILD-TYPE   9  46 148  17
D88V6, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            2            148
  T4            0             17
                vv
clus              N0  N1  N2
  GGT1 MUTATED     3   0   0
  GGT1 WILD-TYPE 131  44  46
D88V7, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  N0            3            131
  N1            0             44
  N2            0             46
                vv
clus              M0  M1 M1A
  GGT1 MUTATED     3   0   0
  GGT1 WILD-TYPE 186  31   1
D88V8, multiclass
     clus
vv    GGT1 MUTATED GGT1 WILD-TYPE
  M0             3            186
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  GGT1 MUTATED    1  2   0  0
  GGT1 WILD-TYPE 47 80  60 29
D88V9, multiclass
     clus
vv    GGT1 MUTATED GGT1 WILD-TYPE
  I              1             47
  II             2             80
  III            0             60
  IV             0             29
                vv
clus              R0  R1  R2  RX
  GGT1 MUTATED     3   0   0   0
  GGT1 WILD-TYPE 185   2  27   1
D88V10, multiclass
    clus
vv   GGT1 MUTATED GGT1 WILD-TYPE
  R0            3            185
  R1            0              2
  R2            0             27
  RX            0              1
D88V11, continuous

Clustering(89) Variable = GRIA1 MUTATION ANALYSIS
D89V1, survival
                 sevent
clus2              0  1
  GRIA1 MUTATED   12  1
  GRIA1 WILD-TYPE 94 13
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             13             107 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
              1              13 
$`GRIA1 MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-3844 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00E 
       14.70         1.02         0.92         1.02         1.02        30.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01K TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02Y 
        0.99        20.98        13.02        39.95         2.01        39.95 
TCGA-AG-A02N 
       61.94 

$`GRIA1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  GRIA1 MUTATED GRIA1 WILD-TYPE 
           0.92            0.92 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          61.94           72.07 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          13.02           10.92 
[1] "0.9 - 61.9 (13.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
[1] "hr=" "2.1"
D89V2, continuous
D89V3, binary
                 cls
clus                0   1
  GRIA1 MUTATED    14   1
  GRIA1 WILD-TYPE 140  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     14    1
  GRIA1 WILD-TYPE  140   67
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON             14             140
  RECTUM             1              67
D89V4, binary
                 cls
clus                0   1
  GRIA1 MUTATED    10   5
  GRIA1 WILD-TYPE  97 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     10    5
  GRIA1 WILD-TYPE   97  112
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  FEMALE            10              97
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GRIA1 MUTATED                     12                             2
  GRIA1 WILD-TYPE                  116                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GRIA1 MUTATED                       1                              0
  GRIA1 WILD-TYPE                    56                              8
D89V5, multiclass
                                clus
vv                               GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON ADENOCARCINOMA                      12             116
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  GRIA1 MUTATED     0   4   8   2
  GRIA1 WILD-TYPE   9  43 142  15
D89V6, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             2              15
                 vv
clus               N0  N1  N2
  GRIA1 MUTATED    10   2   3
  GRIA1 WILD-TYPE 124  42  43
D89V7, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  N0            10             124
  N1             2              42
  N2             3              43
                 vv
clus               M0  M1 M1A
  GRIA1 MUTATED    11   2   1
  GRIA1 WILD-TYPE 178  29   0
D89V8, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             1               0
                 vv
clus               I II III IV
  GRIA1 MUTATED    3  6   2  3
  GRIA1 WILD-TYPE 45 76  58 26
D89V9, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  I               3              45
  II              6              76
  III             2              58
  IV              3              26
                 vv
clus               R0  R1  R2  RX
  GRIA1 MUTATED    12   0   2   0
  GRIA1 WILD-TYPE 176   2  25   1
D89V10, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             2              25
  RX             0               1
D89V11, continuous

Clustering(90) Variable = ING1 MUTATION ANALYSIS
D90V1, survival
                sevent
clus2              0   1
  ING1 MUTATED     4   2
  ING1 WILD-TYPE 102  12
  ING1 MUTATED ING1 WILD-TYPE 
             6            114 
  ING1 MUTATED ING1 WILD-TYPE 
             2             12 
$`ING1 MUTATED`
TCGA-A6-2672 TCGA-AA-3949 TCGA-AA-A010 TCGA-AA-A01F TCGA-AA-A03F TCGA-AF-3913 
       16.54         0.99        20.98        13.02        18.02        10.39 

$`ING1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99        15.02         0.99        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        39.95        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ING1 MUTATED ING1 WILD-TYPE 
          0.99           0.92 
  ING1 MUTATED ING1 WILD-TYPE 
         20.98          72.07 
  ING1 MUTATED ING1 WILD-TYPE 
         14.78          10.77 
[1] "1.0 - 21.0 (14.8)" "0.9 - 72.1 (10.8)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ING1 WILD-TYPE"   "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ING1 WILD-TYPE"   "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ING1 WILD-TYPE"   "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ING1 MUTATED" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE"   "ING1 MUTATED" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" "ING1 WILD-TYPE" 
[1] "hr=" "3.2"
D90V2, continuous
D90V3, binary
                cls
clus               0   1
  ING1 MUTATED     5   1
  ING1 WILD-TYPE 149  67
[1] "tbl2"
                cls
clus             [,1] [,2]
  ING1 MUTATED      5    1
  ING1 WILD-TYPE  149   67
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  COLON             5            149
  RECTUM            1             67
D90V4, binary
                cls
clus               0   1
  ING1 MUTATED     4   2
  ING1 WILD-TYPE 103 115
[1] "tbl2"
                cls
clus             [,1] [,2]
  ING1 MUTATED      4    2
  ING1 WILD-TYPE  103  115
        clus
vv       ING1 MUTATED ING1 WILD-TYPE
  FEMALE            4            103
  MALE              2            115
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ING1 MUTATED                      3                             2
  ING1 WILD-TYPE                  125                            22
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ING1 MUTATED                       1                              0
  ING1 WILD-TYPE                    56                              8
D90V5, multiclass
                                clus
vv                               ING1 MUTATED ING1 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  ING1 MUTATED     0   0   5   1
  ING1 WILD-TYPE   9  47 145  16
D90V6, multiclass
    clus
vv   ING1 MUTATED ING1 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            5            145
  T4            1             16
                vv
clus              N0  N1  N2
  ING1 MUTATED     1   4   1
  ING1 WILD-TYPE 133  40  45
D90V7, multiclass
    clus
vv   ING1 MUTATED ING1 WILD-TYPE
  N0            1            133
  N1            4             40
  N2            1             45
                vv
clus              M0  M1 M1A
  ING1 MUTATED     5   1   0
  ING1 WILD-TYPE 184  30   1
D90V8, multiclass
     clus
vv    ING1 MUTATED ING1 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  ING1 MUTATED    0  1   4  0
  ING1 WILD-TYPE 48 81  56 29
D90V9, multiclass
     clus
vv    ING1 MUTATED ING1 WILD-TYPE
  I              0             48
  II             1             81
  III            4             56
  IV             0             29
                vv
clus              R0  R1  R2  RX
  ING1 MUTATED     6   0   0   0
  ING1 WILD-TYPE 182   2  27   1
D90V10, multiclass
    clus
vv   ING1 MUTATED ING1 WILD-TYPE
  R0            6            182
  R1            0              2
  R2            0             27
  RX            0              1
D90V11, continuous

Clustering(91) Variable = PCDHA10 MUTATION ANALYSIS
D91V1, survival
                   sevent
clus2                 0   1
  PCDHA10 MUTATED     3   2
  PCDHA10 WILD-TYPE 103  12
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
                5               115 
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
                2                12 
$`PCDHA10 MUTATED`
TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02J TCGA-AG-A002 
       18.02         4.01        20.98         5.03        20.94 

$`PCDHA10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
             4.01              0.92 
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
            20.98             72.07 
  PCDHA10 MUTATED PCDHA10 WILD-TYPE 
            18.02             10.92 
[1] "4.0 - 21.0 (18.0)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE"   "PCDHA10 MUTATED" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "PCDHA10 MUTATED" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" "PCDHA10 WILD-TYPE" 
[1] "hr=" "3.4"
D91V2, continuous
D91V3, binary
                   cls
clus                  0   1
  PCDHA10 MUTATED     8   2
  PCDHA10 WILD-TYPE 146  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA10 MUTATED      8    2
  PCDHA10 WILD-TYPE  146   66
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  COLON                8               146
  RECTUM               2                66
D91V4, binary
                   cls
clus                  0   1
  PCDHA10 MUTATED     6   4
  PCDHA10 WILD-TYPE 101 113
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHA10 MUTATED      6    4
  PCDHA10 WILD-TYPE  101  113
        clus
vv       PCDHA10 MUTATED PCDHA10 WILD-TYPE
  FEMALE               6               101
  MALE                 4               113
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PCDHA10 MUTATED                      5                             3
  PCDHA10 WILD-TYPE                  123                            21
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PCDHA10 MUTATED                       2                              0
  PCDHA10 WILD-TYPE                    55                              8
D91V5, multiclass
                                clus
vv                               PCDHA10 MUTATED PCDHA10 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  PCDHA10 MUTATED     0   3   4   3
  PCDHA10 WILD-TYPE   9  44 146  14
D91V6, multiclass
    clus
vv   PCDHA10 MUTATED PCDHA10 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               4               146
  T4               3                14
                   vv
clus                 N0  N1  N2
  PCDHA10 MUTATED     9   1   0
  PCDHA10 WILD-TYPE 125  43  46
D91V7, multiclass
    clus
vv   PCDHA10 MUTATED PCDHA10 WILD-TYPE
  N0               9               125
  N1               1                43
  N2               0                46
                   vv
clus                 M0  M1 M1A
  PCDHA10 MUTATED     9   1   0
  PCDHA10 WILD-TYPE 180  30   1
D91V8, multiclass
     clus
vv    PCDHA10 MUTATED PCDHA10 WILD-TYPE
  M0                9               180
  M1                1                30
  M1A               0                 1
                   vv
clus                 I II III IV
  PCDHA10 MUTATED    3  5   1  1
  PCDHA10 WILD-TYPE 45 77  59 28
D91V9, multiclass
     clus
vv    PCDHA10 MUTATED PCDHA10 WILD-TYPE
  I                 3                45
  II                5                77
  III               1                59
  IV                1                28
                   vv
clus                 R0  R1  R2  RX
  PCDHA10 MUTATED     9   0   1   0
  PCDHA10 WILD-TYPE 179   2  26   1
D91V10, multiclass
    clus
vv   PCDHA10 MUTATED PCDHA10 WILD-TYPE
  R0               9               179
  R1               0                 2
  R2               1                26
  RX               0                 1
D91V11, continuous

Clustering(92) Variable = ZNF208 MUTATION ANALYSIS
D92V1, survival
                  sevent
clus2                0   1
  ZNF208 MUTATED     5   1
  ZNF208 WILD-TYPE 101  13
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               6              114 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               1               13 
$`ZNF208 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-A002 
        1.02         4.01        20.98         1.02         1.02        20.94 

$`ZNF208 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF208 MUTATED ZNF208 WILD-TYPE 
            1.02             0.92 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
           20.98            72.07 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
[1] "hr=" "2"  
D92V2, continuous
D92V3, binary
                  cls
clus                 0   1
  ZNF208 MUTATED     8   3
  ZNF208 WILD-TYPE 146  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      8    3
  ZNF208 WILD-TYPE  146   65
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  COLON               8              146
  RECTUM              3               65
D92V4, binary
                  cls
clus                 0   1
  ZNF208 MUTATED     5   6
  ZNF208 WILD-TYPE 102 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      5    6
  ZNF208 WILD-TYPE  102  111
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  FEMALE              5              102
  MALE                6              111
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZNF208 MUTATED                      6                             2
  ZNF208 WILD-TYPE                  122                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZNF208 MUTATED                       3                              0
  ZNF208 WILD-TYPE                    54                              8
D92V5, multiclass
                                clus
vv                               ZNF208 MUTATED ZNF208 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ZNF208 MUTATED     1   3   4   3
  ZNF208 WILD-TYPE   8  44 146  14
D92V6, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  T1              1                8
  T2              3               44
  T3              4              146
  T4              3               14
                  vv
clus                N0  N1  N2
  ZNF208 MUTATED     6   3   2
  ZNF208 WILD-TYPE 128  41  44
D92V7, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  N0              6              128
  N1              3               41
  N2              2               44
                  vv
clus                M0  M1 M1A
  ZNF208 MUTATED     7   3   0
  ZNF208 WILD-TYPE 182  28   1
D92V8, multiclass
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  M0               7              182
  M1               3               28
  M1A              0                1
                  vv
clus                I II III IV
  ZNF208 MUTATED    2  3   2  3
  ZNF208 WILD-TYPE 46 79  58 26
D92V9, multiclass
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  I                2               46
  II               3               79
  III              2               58
  IV               3               26
                  vv
clus                R0  R1  R2  RX
  ZNF208 MUTATED     7   0   3   0
  ZNF208 WILD-TYPE 181   2  24   1
D92V10, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  R0              7              181
  R1              0                2
  R2              3               24
  RX              0                1
D92V11, continuous

Clustering(93) Variable = CRTC1 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2               0   1
  CRTC1 MUTATED     2   0
  CRTC1 WILD-TYPE 104  14
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              2             118 
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              0              14 
$`CRTC1 MUTATED`
TCGA-AA-3947 TCGA-AG-A025 
        0.99        49.94 

$`CRTC1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        63.98        10.98         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  CRTC1 MUTATED CRTC1 WILD-TYPE 
           0.99            0.92 
  CRTC1 MUTATED CRTC1 WILD-TYPE 
          49.94           72.07 
  CRTC1 MUTATED CRTC1 WILD-TYPE 
         25.465          10.950 
[1] "1.0 - 49.9 (25.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CRTC1 WILD-TYPE"   "CRTC1 MUTATED" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
[1] "Remove cluster labels:" "CRTC1 MUTATED"         
clus
  CRTC1 MUTATED CRTC1 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3949      TCGA-AA-3952 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"CRTC1 WILD-TYPE" "CRTC1 WILD-TYPE" 
D93V2, continuous
D93V3, binary
                 cls
clus                0   1
  CRTC1 MUTATED     5   1
  CRTC1 WILD-TYPE 149  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRTC1 MUTATED      5    1
  CRTC1 WILD-TYPE  149   67
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D93V4, binary
                 cls
clus                0   1
  CRTC1 MUTATED     4   2
  CRTC1 WILD-TYPE 103 115
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CRTC1 MUTATED      4    2
  CRTC1 WILD-TYPE  103  115
        clus
vv       CRTC1 MUTATED CRTC1 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CRTC1 MUTATED                      4                             1
  CRTC1 WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CRTC1 MUTATED                       1                              0
  CRTC1 WILD-TYPE                    56                              8
D93V5, multiclass
                                clus
vv                               CRTC1 MUTATED CRTC1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CRTC1 MUTATED     1   1   3   1
  CRTC1 WILD-TYPE   8  46 147  16
D93V6, multiclass
    clus
vv   CRTC1 MUTATED CRTC1 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             3             147
  T4             1              16
                 vv
clus               N0  N1  N2
  CRTC1 MUTATED     5   1   0
  CRTC1 WILD-TYPE 129  43  46
D93V7, multiclass
    clus
vv   CRTC1 MUTATED CRTC1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  CRTC1 MUTATED     6   0   0
  CRTC1 WILD-TYPE 183  31   1
D93V8, multiclass
     clus
vv    CRTC1 MUTATED CRTC1 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  CRTC1 MUTATED    2  3   1  0
  CRTC1 WILD-TYPE 46 79  59 29
D93V9, multiclass
     clus
vv    CRTC1 MUTATED CRTC1 WILD-TYPE
  I               2              46
  II              3              79
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  CRTC1 MUTATED     6   0   0   0
  CRTC1 WILD-TYPE 182   2  27   1
D93V10, multiclass
    clus
vv   CRTC1 MUTATED CRTC1 WILD-TYPE
  R0             6             182
  R1             0               2
  R2             0              27
  RX             0               1
D93V11, continuous

Clustering(94) Variable = FAM5C MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2               0   1
  FAM5C MUTATED     6   3
  FAM5C WILD-TYPE 100  11
  FAM5C MUTATED FAM5C WILD-TYPE 
              9             111 
  FAM5C MUTATED FAM5C WILD-TYPE 
              3              11 
$`FAM5C MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01P TCGA-AG-A002 TCGA-AG-A01W 
       38.07        20.94        70.03 

$`FAM5C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  FAM5C MUTATED FAM5C WILD-TYPE 
           0.99            0.92 
  FAM5C MUTATED FAM5C WILD-TYPE 
          70.03           72.07 
  FAM5C MUTATED FAM5C WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 70.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "3"  
D94V2, continuous
D94V3, binary
                 cls
clus                0   1
  FAM5C MUTATED    10   3
  FAM5C WILD-TYPE 144  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED     10    3
  FAM5C WILD-TYPE  144   65
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  COLON             10             144
  RECTUM             3              65
D94V4, binary
                 cls
clus                0   1
  FAM5C MUTATED     9   4
  FAM5C WILD-TYPE  98 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      9    4
  FAM5C WILD-TYPE   98  113
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             9              98
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FAM5C MUTATED                      7                             3
  FAM5C WILD-TYPE                  121                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FAM5C MUTATED                       3                              0
  FAM5C WILD-TYPE                    54                              8
D94V5, multiclass
                                clus
vv                               FAM5C MUTATED FAM5C WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  FAM5C MUTATED     0   4   6   3
  FAM5C WILD-TYPE   9  43 144  14
D94V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             0               9
  T2             4              43
  T3             6             144
  T4             3              14
                 vv
clus               N0  N1  N2
  FAM5C MUTATED    12   1   0
  FAM5C WILD-TYPE 122  43  46
D94V7, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0            12             122
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  FAM5C MUTATED    12   0   0
  FAM5C WILD-TYPE 177  31   1
D94V8, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  FAM5C MUTATED    3  8   1  0
  FAM5C WILD-TYPE 45 74  59 29
D94V9, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  I               3              45
  II              8              74
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  FAM5C MUTATED    11   0   0   0
  FAM5C WILD-TYPE 177   2  27   1
D94V10, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  R0            11             177
  R1             0               2
  R2             0              27
  RX             0               1
D94V11, continuous

Clustering(95) Variable = GUCY1A3 MUTATION ANALYSIS
D95V1, survival
                   sevent
clus2                0  1
  GUCY1A3 MUTATED    8  2
  GUCY1A3 WILD-TYPE 98 12
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               110 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
                2                12 
$`GUCY1A3 MUTATED`
TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01R TCGA-AG-A002 TCGA-AG-A032 
        0.99        35.01        20.94        38.01 

$`GUCY1A3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
             0.99              0.92 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
            38.01             72.07 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
            2.515            11.490 
[1] "1.0 - 38.0 (2.5)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
[1] "hr=" "2.6"
D95V2, continuous
D95V3, binary
                   cls
clus                  0   1
  GUCY1A3 MUTATED    10   2
  GUCY1A3 WILD-TYPE 144  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED     10    2
  GUCY1A3 WILD-TYPE  144   66
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON               10               144
  RECTUM               2                66
D95V4, binary
                   cls
clus                  0   1
  GUCY1A3 MUTATED     5   7
  GUCY1A3 WILD-TYPE 102 110
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      5    7
  GUCY1A3 WILD-TYPE  102  110
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  FEMALE               5               102
  MALE                 7               110
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GUCY1A3 MUTATED                      6                             4
  GUCY1A3 WILD-TYPE                  122                            20
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GUCY1A3 MUTATED                       2                              0
  GUCY1A3 WILD-TYPE                    55                              8
D95V5, multiclass
                                clus
vv                               GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON ADENOCARCINOMA                         6               122
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  GUCY1A3 MUTATED     0   2   7   3
  GUCY1A3 WILD-TYPE   9  45 143  14
D95V6, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  T1               0                 9
  T2               2                45
  T3               7               143
  T4               3                14
                   vv
clus                 N0  N1  N2
  GUCY1A3 MUTATED     7   2   3
  GUCY1A3 WILD-TYPE 127  42  43
D95V7, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  N0               7               127
  N1               2                42
  N2               3                43
                   vv
clus                 M0  M1 M1A
  GUCY1A3 MUTATED    11   0   0
  GUCY1A3 WILD-TYPE 178  31   1
D95V8, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  GUCY1A3 MUTATED    1  5   5  0
  GUCY1A3 WILD-TYPE 47 77  55 29
D95V9, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  I                 1                47
  II                5                77
  III               5                55
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  GUCY1A3 MUTATED    11   0   0   0
  GUCY1A3 WILD-TYPE 177   2  27   1
D95V10, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  R0              11               177
  R1               0                 2
  R2               0                27
  RX               0                 1
D95V11, continuous

Clustering(96) Variable = FAM22F MUTATION ANALYSIS
D96V1, survival
                  sevent
clus2                0   1
  FAM22F MUTATED     3   1
  FAM22F WILD-TYPE 103  13
  FAM22F MUTATED FAM22F WILD-TYPE 
               4              116 
  FAM22F MUTATED FAM22F WILD-TYPE 
               1               13 
$`FAM22F MUTATED`
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N TCGA-AG-A002 
        0.99         1.02         4.01        20.94 

$`FAM22F WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FAM22F MUTATED FAM22F WILD-TYPE 
            0.99             0.92 
  FAM22F MUTATED FAM22F WILD-TYPE 
           20.94            72.07 
  FAM22F MUTATED FAM22F WILD-TYPE 
           2.515           11.490 
[1] "1.0 - 20.9 (2.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
[1] "hr=" "3.5"
D96V2, continuous
D96V3, binary
                  cls
clus                 0   1
  FAM22F MUTATED     8   1
  FAM22F WILD-TYPE 146  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      8    1
  FAM22F WILD-TYPE  146   67
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D96V4, binary
                  cls
clus                 0   1
  FAM22F MUTATED     0   9
  FAM22F WILD-TYPE 107 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      0    9
  FAM22F WILD-TYPE  107  108
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  FEMALE              0              107
  MALE                9              108
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FAM22F MUTATED                      7                             1
  FAM22F WILD-TYPE                  121                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FAM22F MUTATED                       1                              0
  FAM22F WILD-TYPE                    56                              8
D96V5, multiclass
                                clus
vv                               FAM22F MUTATED FAM22F WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  FAM22F MUTATED     0   4   2   3
  FAM22F WILD-TYPE   9  43 148  14
D96V6, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  T1              0                9
  T2              4               43
  T3              2              148
  T4              3               14
                  vv
clus                N0  N1  N2
  FAM22F MUTATED     5   2   2
  FAM22F WILD-TYPE 129  42  44
D96V7, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  N0              5              129
  N1              2               42
  N2              2               44
                  vv
clus                M0  M1 M1A
  FAM22F MUTATED     5   3   0
  FAM22F WILD-TYPE 184  28   1
D96V8, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  M0               5              184
  M1               3               28
  M1A              0                1
                  vv
clus                I II III IV
  FAM22F MUTATED    3  1   1  3
  FAM22F WILD-TYPE 45 81  59 26
D96V9, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  I                3               45
  II               1               81
  III              1               59
  IV               3               26
                  vv
clus                R0  R1  R2  RX
  FAM22F MUTATED     5   0   3   0
  FAM22F WILD-TYPE 183   2  24   1
D96V10, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  R0              5              183
  R1              0                2
  R2              3               24
  RX              0                1
D96V11, continuous

Clustering(97) Variable = CHRDL1 MUTATION ANALYSIS
D97V1, survival
                  sevent
clus2                0   1
  CHRDL1 MUTATED     5   1
  CHRDL1 WILD-TYPE 101  13
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               6              114 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               1               13 
$`CHRDL1 MUTATED`
TCGA-AA-3844 TCGA-AA-A00N TCGA-AA-A03J TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N 
        0.92         4.01        40.93         1.02        20.94        61.94 

$`CHRDL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
            0.92             0.92 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
           61.94            72.07 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
          12.475           10.950 
[1] "0.9 - 61.9 (12.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
[1] "hr=" "1.1"
D97V2, continuous
D97V3, binary
                  cls
clus                 0   1
  CHRDL1 MUTATED     7   4
  CHRDL1 WILD-TYPE 147  64
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      7    4
  CHRDL1 WILD-TYPE  147   64
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  COLON               7              147
  RECTUM              4               64
D97V4, binary
                  cls
clus                 0   1
  CHRDL1 MUTATED     6   5
  CHRDL1 WILD-TYPE 101 112
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      6    5
  CHRDL1 WILD-TYPE  101  112
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  FEMALE              6              101
  MALE                5              112
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CHRDL1 MUTATED                      6                             1
  CHRDL1 WILD-TYPE                  122                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CHRDL1 MUTATED                       4                              0
  CHRDL1 WILD-TYPE                    53                              8
D97V5, multiclass
                                clus
vv                               CHRDL1 MUTATED CHRDL1 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  CHRDL1 MUTATED     1   2   6   2
  CHRDL1 WILD-TYPE   8  45 144  15
D97V6, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              6              144
  T4              2               15
                  vv
clus                N0  N1  N2
  CHRDL1 MUTATED     7   2   2
  CHRDL1 WILD-TYPE 127  42  44
D97V7, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  N0              7              127
  N1              2               42
  N2              2               44
                  vv
clus                M0  M1 M1A
  CHRDL1 MUTATED    11   0   0
  CHRDL1 WILD-TYPE 178  31   1
D97V8, multiclass
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  M0              11              178
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  CHRDL1 MUTATED    3  4   4  0
  CHRDL1 WILD-TYPE 45 78  56 29
D97V9, multiclass
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  I                3               45
  II               4               78
  III              4               56
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  CHRDL1 MUTATED    10   0   1   0
  CHRDL1 WILD-TYPE 178   2  26   1
D97V10, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  R0             10              178
  R1              0                2
  R2              1               26
  RX              0                1
D97V11, continuous

Clustering(98) Variable = EDNRB MUTATION ANALYSIS
D98V1, survival
                 sevent
clus2               0   1
  EDNRB MUTATED     6   0
  EDNRB WILD-TYPE 100  14
  EDNRB MUTATED EDNRB WILD-TYPE 
              6             114 
  EDNRB MUTATED EDNRB WILD-TYPE 
              0              14 
$`EDNRB MUTATED`
TCGA-A6-3810 TCGA-AA-3947 TCGA-AA-A010 TCGA-AG-3894 TCGA-AG-A002 TCGA-AG-A00H 
        8.09         0.99        20.98         0.99        20.94        25.94 

$`EDNRB WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
       13.91         6.02        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  EDNRB MUTATED EDNRB WILD-TYPE 
           0.99            0.92 
  EDNRB MUTATED EDNRB WILD-TYPE 
          25.94           72.07 
  EDNRB MUTATED EDNRB WILD-TYPE 
         14.515          10.950 
[1] "1.0 - 25.9 (14.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" "EDNRB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EDNRB MUTATED" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE"   "EDNRB MUTATED" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" "EDNRB WILD-TYPE" 
[1] "hr="     "2.7e+07"
D98V2, continuous
D98V3, binary
                 cls
clus                0   1
  EDNRB MUTATED     6   4
  EDNRB WILD-TYPE 148  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      6    4
  EDNRB WILD-TYPE  148   64
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  COLON              6             148
  RECTUM             4              64
D98V4, binary
                 cls
clus                0   1
  EDNRB MUTATED     3   7
  EDNRB WILD-TYPE 104 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EDNRB MUTATED      3    7
  EDNRB WILD-TYPE  104  110
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  FEMALE             3             104
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  EDNRB MUTATED                      5                             1
  EDNRB WILD-TYPE                  123                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  EDNRB MUTATED                       4                              0
  EDNRB WILD-TYPE                    53                              8
D98V5, multiclass
                                clus
vv                               EDNRB MUTATED EDNRB WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  EDNRB MUTATED     0   1   6   3
  EDNRB WILD-TYPE   9  46 144  14
D98V6, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  T1             0               9
  T2             1              46
  T3             6             144
  T4             3              14
                 vv
clus               N0  N1  N2
  EDNRB MUTATED     7   3   0
  EDNRB WILD-TYPE 127  41  46
D98V7, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  N0             7             127
  N1             3              41
  N2             0              46
                 vv
clus               M0  M1 M1A
  EDNRB MUTATED    10   0   0
  EDNRB WILD-TYPE 179  31   1
D98V8, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  EDNRB MUTATED    1  6   3  0
  EDNRB WILD-TYPE 47 76  57 29
D98V9, multiclass
     clus
vv    EDNRB MUTATED EDNRB WILD-TYPE
  I               1              47
  II              6              76
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  EDNRB MUTATED     8   0   1   0
  EDNRB WILD-TYPE 180   2  26   1
D98V10, multiclass
    clus
vv   EDNRB MUTATED EDNRB WILD-TYPE
  R0             8             180
  R1             0               2
  R2             1              26
  RX             0               1
D98V11, continuous

Clustering(99) Variable = IFT80 MUTATION ANALYSIS
D99V1, survival
                 sevent
clus2              0  1
  IFT80 MUTATED    8  1
  IFT80 WILD-TYPE 98 13
  IFT80 MUTATED IFT80 WILD-TYPE 
              9             111 
  IFT80 MUTATED IFT80 WILD-TYPE 
              1              13 
$`IFT80 MUTATED`
TCGA-A6-2670 TCGA-AA-3966 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A02O TCGA-AA-A02Y 
       13.91         1.02        38.07         1.02         0.92        39.95 
TCGA-AG-3892 TCGA-AG-4001 TCGA-AG-A002 
        1.02         1.02        20.94 

$`IFT80 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       16.54        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        12.00        13.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        2.01         5.03        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  IFT80 MUTATED IFT80 WILD-TYPE 
           0.92            0.92 
  IFT80 MUTATED IFT80 WILD-TYPE 
          39.95           72.07 
  IFT80 MUTATED IFT80 WILD-TYPE 
           1.02           10.98 
[1] "0.9 - 40.0 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE"   "IFT80 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "IFT80 MUTATED" "IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"IFT80 WILD-TYPE"   "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "IFT80 MUTATED" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" "IFT80 WILD-TYPE" 
[1] "hr=" "1.1"
D99V2, continuous
D99V3, binary
                 cls
clus                0   1
  IFT80 MUTATED     7   3
  IFT80 WILD-TYPE 147  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      7    3
  IFT80 WILD-TYPE  147   65
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  COLON              7             147
  RECTUM             3              65
D99V4, binary
                 cls
clus                0   1
  IFT80 MUTATED     5   5
  IFT80 WILD-TYPE 102 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  IFT80 MUTATED      5    5
  IFT80 WILD-TYPE  102  112
        clus
vv       IFT80 MUTATED IFT80 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  IFT80 MUTATED                      5                             2
  IFT80 WILD-TYPE                  123                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  IFT80 MUTATED                       3                              0
  IFT80 WILD-TYPE                    54                              8
D99V5, multiclass
                                clus
vv                               IFT80 MUTATED IFT80 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  IFT80 MUTATED     1   3   6   0
  IFT80 WILD-TYPE   8  44 144  17
D99V6, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             6             144
  T4             0              17
                 vv
clus               N0  N1  N2
  IFT80 MUTATED     9   1   0
  IFT80 WILD-TYPE 125  43  46
D99V7, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  N0             9             125
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  IFT80 MUTATED    10   0   0
  IFT80 WILD-TYPE 179  31   1
D99V8, multiclass
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  IFT80 MUTATED    4  5   1  0
  IFT80 WILD-TYPE 44 77  59 29
D99V9, multiclass
     clus
vv    IFT80 MUTATED IFT80 WILD-TYPE
  I               4              44
  II              5              77
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  IFT80 MUTATED     9   0   0   0
  IFT80 WILD-TYPE 179   2  27   1
D99V10, multiclass
    clus
vv   IFT80 MUTATED IFT80 WILD-TYPE
  R0             9             179
  R1             0               2
  R2             0              27
  RX             0               1
D99V11, continuous

Clustering(100) Variable = ANK2 MUTATION ANALYSIS
D100V1, survival
                sevent
clus2             0  1
  ANK2 MUTATED   14  4
  ANK2 WILD-TYPE 92 10
  ANK2 MUTATED ANK2 WILD-TYPE 
            18            102 
  ANK2 MUTATED ANK2 WILD-TYPE 
             4             10 
$`ANK2 MUTATED`
TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3877 TCGA-AA-3977 TCGA-AA-A00N 
       14.70        10.92         1.02         0.99         1.02         4.01 
TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A02H TCGA-AA-A02O 
       20.98        38.07         1.02        33.04         2.01         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A00Y TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A032 
        1.02        20.94        23.01         1.94        61.94        38.01 

$`ANK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        35.01         1.02 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A036 
       63.98        10.98        49.94        38.93        40.96        72.07 

  ANK2 MUTATED ANK2 WILD-TYPE 
          0.92           0.92 
  ANK2 MUTATED ANK2 WILD-TYPE 
         61.94          72.07 
  ANK2 MUTATED ANK2 WILD-TYPE 
         7.465         11.490 
[1] "0.9 - 61.9 (7.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "ANK2 MUTATED" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
[1] "hr=" "2.3"
D100V2, continuous
D100V3, binary
                cls
clus               0   1
  ANK2 MUTATED    24   6
  ANK2 WILD-TYPE 130  62
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     24    6
  ANK2 WILD-TYPE  130   62
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  COLON            24            130
  RECTUM            6             62
D100V4, binary
                cls
clus               0   1
  ANK2 MUTATED    17  13
  ANK2 WILD-TYPE  90 104
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     17   13
  ANK2 WILD-TYPE   90  104
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  FEMALE           17             90
  MALE             13            104
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ANK2 MUTATED                     18                             6
  ANK2 WILD-TYPE                  110                            18
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ANK2 MUTATED                       6                              0
  ANK2 WILD-TYPE                    51                              8
D100V5, multiclass
                                clus
vv                               ANK2 MUTATED ANK2 WILD-TYPE
  COLON ADENOCARCINOMA                     18            110
  COLON MUCINOUS ADENOCARCINOMA             6             18
  RECTAL ADENOCARCINOMA                     6             51
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  ANK2 MUTATED     2   3  19   5
  ANK2 WILD-TYPE   7  44 131  12
D100V6, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  T1            2              7
  T2            3             44
  T3           19            131
  T4            5             12
                vv
clus              N0  N1  N2
  ANK2 MUTATED    19   6   5
  ANK2 WILD-TYPE 115  38  41
D100V7, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  N0           19            115
  N1            6             38
  N2            5             41
                vv
clus              M0  M1 M1A
  ANK2 MUTATED    26   3   0
  ANK2 WILD-TYPE 163  28   1
D100V8, multiclass
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  M0            26            163
  M1             3             28
  M1A            0              1
                vv
clus              I II III IV
  ANK2 MUTATED    4 14   8  3
  ANK2 WILD-TYPE 44 68  52 26
D100V9, multiclass
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  I              4             44
  II            14             68
  III            8             52
  IV             3             26
                vv
clus              R0  R1  R2  RX
  ANK2 MUTATED    25   1   2   0
  ANK2 WILD-TYPE 163   1  25   1
D100V10, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  R0           25            163
  R1            1              1
  R2            2             25
  RX            0              1
D100V11, continuous

Clustering(101) Variable = CASP14 MUTATION ANALYSIS
D101V1, survival
                  sevent
clus2                0   1
  CASP14 MUTATED     4   1
  CASP14 WILD-TYPE 102  13
  CASP14 MUTATED CASP14 WILD-TYPE 
               5              115 
  CASP14 MUTATED CASP14 WILD-TYPE 
               1               13 
$`CASP14 MUTATED`
TCGA-AA-3977 TCGA-AA-A01P TCGA-AG-3727 TCGA-AG-4007 TCGA-AG-A002 
        1.02        38.07         0.95         1.02        20.94 

$`CASP14 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 
        2.01         1.02         0.99         1.02         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CASP14 MUTATED CASP14 WILD-TYPE 
            0.95             0.92 
  CASP14 MUTATED CASP14 WILD-TYPE 
           38.07            72.07 
  CASP14 MUTATED CASP14 WILD-TYPE 
            1.02            10.98 
[1] "0.9 - 38.1 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE"   "CASP14 MUTATED" "CASP14 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CASP14 MUTATED" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" "CASP14 WILD-TYPE" 
[1] "hr=" "2.1"
D101V2, continuous
D101V3, binary
                  cls
clus                 0   1
  CASP14 MUTATED     4   4
  CASP14 WILD-TYPE 150  64
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      4    4
  CASP14 WILD-TYPE  150   64
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  COLON               4              150
  RECTUM              4               64
D101V4, binary
                  cls
clus                 0   1
  CASP14 MUTATED     4   4
  CASP14 WILD-TYPE 103 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CASP14 MUTATED      4    4
  CASP14 WILD-TYPE  103  113
        clus
vv       CASP14 MUTATED CASP14 WILD-TYPE
  FEMALE              4              103
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CASP14 MUTATED                      4                             0
  CASP14 WILD-TYPE                  124                            24
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CASP14 MUTATED                       3                              0
  CASP14 WILD-TYPE                    54                              8
D101V5, multiclass
                                clus
vv                               CASP14 MUTATED CASP14 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  CASP14 MUTATED     0   2   5   1
  CASP14 WILD-TYPE   9  45 145  16
D101V6, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              5              145
  T4              1               16
                  vv
clus                N0  N1  N2
  CASP14 MUTATED     2   3   3
  CASP14 WILD-TYPE 132  41  43
D101V7, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  N0              2              132
  N1              3               41
  N2              3               43
                  vv
clus                M0  M1 M1A
  CASP14 MUTATED     5   2   0
  CASP14 WILD-TYPE 184  29   1
D101V8, multiclass
     clus
vv    CASP14 MUTATED CASP14 WILD-TYPE
  M0               5              184
  M1               2               29
  M1A              0                1
                  vv
clus                I II III IV
  CASP14 MUTATED    1  0   4  2
  CASP14 WILD-TYPE 47 82  56 27
D101V9, multiclass
     clus
vv    CASP14 MUTATED CASP14 WILD-TYPE
  I                1               47
  II               0               82
  III              4               56
  IV               2               27
                  vv
clus                R0  R1  R2  RX
  CASP14 MUTATED     5   0   2   0
  CASP14 WILD-TYPE 183   2  25   1
D101V10, multiclass
    clus
vv   CASP14 MUTATED CASP14 WILD-TYPE
  R0              5              183
  R1              0                2
  R2              2               25
  RX              0                1
D101V11, continuous

Clustering(102) Variable = LASS3 MUTATION ANALYSIS
D102V1, survival
                 sevent
clus2               0   1
  LASS3 MUTATED     6   1
  LASS3 WILD-TYPE 100  13
  LASS3 MUTATED LASS3 WILD-TYPE 
              7             113 
  LASS3 MUTATED LASS3 WILD-TYPE 
              1              13 
$`LASS3 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01I TCGA-AG-3892 TCGA-AG-A002 
        1.02         1.02        20.98        12.00         1.02        20.94 
TCGA-AG-A026 
        1.94 

$`LASS3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  LASS3 MUTATED LASS3 WILD-TYPE 
           1.02            0.92 
  LASS3 MUTATED LASS3 WILD-TYPE 
          20.98           72.07 
  LASS3 MUTATED LASS3 WILD-TYPE 
           1.94           10.98 
[1] "1.0 - 21.0 (1.9)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LASS3 MUTATED" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE"   "LASS3 MUTATED" "LASS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" "LASS3 WILD-TYPE" 
[1] "hr=" "1.7"
D102V2, continuous
D102V3, binary
                 cls
clus                0   1
  LASS3 MUTATED     6   3
  LASS3 WILD-TYPE 148  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      6    3
  LASS3 WILD-TYPE  148   65
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D102V4, binary
                 cls
clus                0   1
  LASS3 MUTATED     5   4
  LASS3 WILD-TYPE 102 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LASS3 MUTATED      5    4
  LASS3 WILD-TYPE  102  113
        clus
vv       LASS3 MUTATED LASS3 WILD-TYPE
  FEMALE             5             102
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LASS3 MUTATED                      6                             0
  LASS3 WILD-TYPE                  122                            24
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LASS3 MUTATED                       3                              0
  LASS3 WILD-TYPE                    54                              8
D102V5, multiclass
                                clus
vv                               LASS3 MUTATED LASS3 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  LASS3 MUTATED     1   3   3   2
  LASS3 WILD-TYPE   8  44 147  15
D102V6, multiclass
    clus
vv   LASS3 MUTATED LASS3 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             3             147
  T4             2              15
                 vv
clus               N0  N1  N2
  LASS3 MUTATED     8   1   0
  LASS3 WILD-TYPE 126  43  46
D102V7, multiclass
    clus
vv   LASS3 MUTATED LASS3 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  LASS3 MUTATED     8   0   0
  LASS3 WILD-TYPE 181  31   1
D102V8, multiclass
     clus
vv    LASS3 MUTATED LASS3 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  LASS3 MUTATED    3  4   1  0
  LASS3 WILD-TYPE 45 78  59 29
D102V9, multiclass
     clus
vv    LASS3 MUTATED LASS3 WILD-TYPE
  I               3              45
  II              4              78
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  LASS3 MUTATED     7   1   0   0
  LASS3 WILD-TYPE 181   1  27   1
D102V10, multiclass
    clus
vv   LASS3 MUTATED LASS3 WILD-TYPE
  R0             7             181
  R1             1               1
  R2             0              27
  RX             0               1
D102V11, continuous

Clustering(103) Variable = P2RY10 MUTATION ANALYSIS
D103V1, survival
                  sevent
clus2                0   1
  P2RY10 MUTATED     4   2
  P2RY10 WILD-TYPE 102  12
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               6              114 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
               2               12 
$`P2RY10 MUTATED`
TCGA-A6-2678 TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01F TCGA-AG-A026 
       14.37         0.99         1.02         4.01        13.02         1.94 

$`P2RY10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       20.98        15.02         0.99        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94        38.93        61.94        40.96        38.01        72.07 

  P2RY10 MUTATED P2RY10 WILD-TYPE 
            0.99             0.92 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
           14.37            72.07 
  P2RY10 MUTATED P2RY10 WILD-TYPE 
           2.975           11.490 
[1] "1.0 - 14.4 (3.0)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE"   "P2RY10 MUTATED" "P2RY10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" "P2RY10 WILD-TYPE" 
[1] "hr=" "6"  
D103V2, continuous
D103V3, binary
                  cls
clus                 0   1
  P2RY10 MUTATED     6   1
  P2RY10 WILD-TYPE 148  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      6    1
  P2RY10 WILD-TYPE  148   67
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D103V4, binary
                  cls
clus                 0   1
  P2RY10 MUTATED     3   4
  P2RY10 WILD-TYPE 104 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  P2RY10 MUTATED      3    4
  P2RY10 WILD-TYPE  104  113
        clus
vv       P2RY10 MUTATED P2RY10 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  P2RY10 MUTATED                      4                             2
  P2RY10 WILD-TYPE                  124                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  P2RY10 MUTATED                       1                              0
  P2RY10 WILD-TYPE                    56                              8
D103V5, multiclass
                                clus
vv                               P2RY10 MUTATED P2RY10 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  P2RY10 MUTATED     0   1   4   2
  P2RY10 WILD-TYPE   9  46 146  15
D103V6, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              4              146
  T4              2               15
                  vv
clus                N0  N1  N2
  P2RY10 MUTATED     5   2   0
  P2RY10 WILD-TYPE 129  42  46
D103V7, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  N0              5              129
  N1              2               42
  N2              0               46
                  vv
clus                M0  M1 M1A
  P2RY10 MUTATED     6   0   0
  P2RY10 WILD-TYPE 183  31   1
D103V8, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  P2RY10 MUTATED    0  4   2  0
  P2RY10 WILD-TYPE 48 78  58 29
D103V9, multiclass
     clus
vv    P2RY10 MUTATED P2RY10 WILD-TYPE
  I                0               48
  II               4               78
  III              2               58
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  P2RY10 MUTATED     5   1   0   0
  P2RY10 WILD-TYPE 183   1  27   1
D103V10, multiclass
    clus
vv   P2RY10 MUTATED P2RY10 WILD-TYPE
  R0              5              183
  R1              1                1
  R2              0               27
  RX              0                1
D103V11, continuous

Clustering(104) Variable = CNTN1 MUTATION ANALYSIS
D104V1, survival
                 sevent
clus2              0  1
  CNTN1 MUTATED    8  1
  CNTN1 WILD-TYPE 98 13
  CNTN1 MUTATED CNTN1 WILD-TYPE 
              9             111 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
              1              13 
$`CNTN1 MUTATED`
TCGA-A6-2672 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
       16.54         0.99         0.99        18.02         4.01        20.98 
TCGA-AG-3599 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02        20.94 

$`CNTN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CNTN1 MUTATED CNTN1 WILD-TYPE 
           0.99            0.92 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
          20.98           72.07 
  CNTN1 MUTATED CNTN1 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED"   "CNTN1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CNTN1 WILD-TYPE"   "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CNTN1 MUTATED" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" "CNTN1 WILD-TYPE" 
[1] "hr=" "1.3"
D104V2, continuous
D104V3, binary
                 cls
clus                0   1
  CNTN1 MUTATED    10   4
  CNTN1 WILD-TYPE 144  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED     10    4
  CNTN1 WILD-TYPE  144   64
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  COLON             10             144
  RECTUM             4              64
D104V4, binary
                 cls
clus                0   1
  CNTN1 MUTATED     5   9
  CNTN1 WILD-TYPE 102 108
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN1 MUTATED      5    9
  CNTN1 WILD-TYPE  102  108
        clus
vv       CNTN1 MUTATED CNTN1 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CNTN1 MUTATED                      8                             2
  CNTN1 WILD-TYPE                  120                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CNTN1 MUTATED                       3                              0
  CNTN1 WILD-TYPE                    54                              8
D104V5, multiclass
                                clus
vv                               CNTN1 MUTATED CNTN1 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CNTN1 MUTATED     1   4   5   4
  CNTN1 WILD-TYPE   8  43 145  13
D104V6, multiclass
    clus
vv   CNTN1 MUTATED CNTN1 WILD-TYPE
  T1             1               8
  T2             4              43
  T3             5             145
  T4             4              13
                 vv
clus               N0  N1  N2
  CNTN1 MUTATED     9   2   3
  CNTN1 WILD-TYPE 125  42  43
D104V7, multiclass
    clus
vv   CNTN1 MUTATED CNTN1 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             3              43
                 vv
clus               M0  M1 M1A
  CNTN1 MUTATED    12   2   0
  CNTN1 WILD-TYPE 177  29   1
D104V8, multiclass
     clus
vv    CNTN1 MUTATED CNTN1 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  CNTN1 MUTATED    5  4   3  2
  CNTN1 WILD-TYPE 43 78  57 27
D104V9, multiclass
     clus
vv    CNTN1 MUTATED CNTN1 WILD-TYPE
  I               5              43
  II              4              78
  III             3              57
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  CNTN1 MUTATED    12   0   2   0
  CNTN1 WILD-TYPE 176   2  25   1
D104V10, multiclass
    clus
vv   CNTN1 MUTATED CNTN1 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             2              25
  RX             0               1
D104V11, continuous

Clustering(105) Variable = ISL1 MUTATION ANALYSIS
D105V1, survival
                sevent
clus2              0   1
  ISL1 MUTATED     5   0
  ISL1 WILD-TYPE 101  14
  ISL1 MUTATED ISL1 WILD-TYPE 
             5            115 
  ISL1 MUTATED ISL1 WILD-TYPE 
             0             14 
$`ISL1 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-A010 
        0.99         0.99         1.02         0.99        20.98 

$`ISL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99           0.92 
  ISL1 MUTATED ISL1 WILD-TYPE 
         20.98          72.07 
  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99          12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
[1] "hr="     "9300000"
D105V2, continuous
D105V3, binary
                cls
clus               0   1
  ISL1 MUTATED     8   0
  ISL1 WILD-TYPE 146  68
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  146   68
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  COLON             8            146
  RECTUM            0             68
D105V4, binary
                cls
clus               0   1
  ISL1 MUTATED     3   5
  ISL1 WILD-TYPE 104 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      3    5
  ISL1 WILD-TYPE  104  112
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  FEMALE            3            104
  MALE              5            112
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ISL1 MUTATED                      8                             0
  ISL1 WILD-TYPE                  120                            24
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ISL1 MUTATED                       0                              0
  ISL1 WILD-TYPE                    57                              8
D105V5, multiclass
                                clus
vv                               ISL1 MUTATED ISL1 WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  ISL1 MUTATED     0   1   6   1
  ISL1 WILD-TYPE   9  46 144  16
D105V6, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            6            144
  T4            1             16
                vv
clus              N0  N1  N2
  ISL1 MUTATED     3   4   1
  ISL1 WILD-TYPE 131  40  45
D105V7, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  N0            3            131
  N1            4             40
  N2            1             45
                vv
clus              M0  M1 M1A
  ISL1 MUTATED     7   1   0
  ISL1 WILD-TYPE 182  30   1
D105V8, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  ISL1 MUTATED    0  3   4  1
  ISL1 WILD-TYPE 48 79  56 28
D105V9, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  I              0             48
  II             3             79
  III            4             56
  IV             1             28
                vv
clus              R0  R1  R2  RX
  ISL1 MUTATED     7   0   1   0
  ISL1 WILD-TYPE 181   2  26   1
D105V10, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  R0            7            181
  R1            0              2
  R2            1             26
  RX            0              1
D105V11, continuous

Clustering(106) Variable = ARID2 MUTATION ANALYSIS
D106V1, survival
                 sevent
clus2              0  1
  ARID2 MUTATED    9  1
  ARID2 WILD-TYPE 97 13
  ARID2 MUTATED ARID2 WILD-TYPE 
             10             110 
  ARID2 MUTATED ARID2 WILD-TYPE 
              1              13 
$`ARID2 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q 
        1.02         0.99         1.02         4.01        20.98         1.02 
TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A032 
        1.02        20.94        17.03        38.01 

$`ARID2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  ARID2 MUTATED ARID2 WILD-TYPE 
           0.99            0.92 
  ARID2 MUTATED ARID2 WILD-TYPE 
          38.01           72.07 
  ARID2 MUTATED ARID2 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 38.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ARID2 WILD-TYPE"   "ARID2 MUTATED"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" "ARID2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ARID2 WILD-TYPE" "ARID2 WILD-TYPE"   "ARID2 MUTATED" "ARID2 WILD-TYPE" 
[1] "hr=" "1.1"
D106V2, continuous
D106V3, binary
                 cls
clus                0   1
  ARID2 MUTATED    11   4
  ARID2 WILD-TYPE 143  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED     11    4
  ARID2 WILD-TYPE  143   64
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  COLON             11             143
  RECTUM             4              64
D106V4, binary
                 cls
clus                0   1
  ARID2 MUTATED     8   7
  ARID2 WILD-TYPE  99 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ARID2 MUTATED      8    7
  ARID2 WILD-TYPE   99  110
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  FEMALE             8              99
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ARID2 MUTATED                      9                             1
  ARID2 WILD-TYPE                  119                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ARID2 MUTATED                       4                              0
  ARID2 WILD-TYPE                    53                              8
D106V5, multiclass
                                clus
vv                               ARID2 MUTATED ARID2 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ARID2 MUTATED     0   2  10   3
  ARID2 WILD-TYPE   9  45 140  14
D106V6, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3            10             140
  T4             3              14
                 vv
clus               N0  N1  N2
  ARID2 MUTATED    11   2   2
  ARID2 WILD-TYPE 123  42  44
D106V7, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  N0            11             123
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  ARID2 MUTATED    12   2   0
  ARID2 WILD-TYPE 177  29   1
D106V8, multiclass
     clus
vv    ARID2 MUTATED ARID2 WILD-TYPE
  M0             12             177
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  ARID2 MUTATED    1  9   2  2
  ARID2 WILD-TYPE 47 73  58 27
D106V9, multiclass
     clus
vv    ARID2 MUTATED ARID2 WILD-TYPE
  I               1              47
  II              9              73
  III             2              58
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  ARID2 MUTATED    12   0   2   0
  ARID2 WILD-TYPE 176   2  25   1
D106V10, multiclass
    clus
vv   ARID2 MUTATED ARID2 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             2              25
  RX             0               1
D106V11, continuous

Clustering(107) Variable = EIF4A2 MUTATION ANALYSIS
D107V1, survival
                  sevent
clus2                0   1
  EIF4A2 MUTATED     2   0
  EIF4A2 WILD-TYPE 104  14
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               2              118 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               0               14 
$`EIF4A2 MUTATED`
TCGA-AA-A017 TCGA-AG-A01Y 
       15.02        63.98 

$`EIF4A2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        20.98         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
           15.02             0.92 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
           63.98            72.07 
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
           39.50            10.77 
[1] "15.0 - 64.0 (39.5)" "0.9 - 72.1 (10.8)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE"   "EIF4A2 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
[1] "Remove cluster labels:" "EIF4A2 MUTATED"        
clus
  EIF4A2 MUTATED EIF4A2 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A020       TCGA-AG-A025 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"EIF4A2 WILD-TYPE" "EIF4A2 WILD-TYPE" 
D107V2, continuous
D107V3, binary
                  cls
clus                 0   1
  EIF4A2 MUTATED     4   1
  EIF4A2 WILD-TYPE 150  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      4    1
  EIF4A2 WILD-TYPE  150   67
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  COLON               4              150
  RECTUM              1               67
D107V4, binary
                  cls
clus                 0   1
  EIF4A2 MUTATED     3   2
  EIF4A2 WILD-TYPE 104 115
[1] "tbl2"
                  cls
clus               [,1] [,2]
  EIF4A2 MUTATED      3    2
  EIF4A2 WILD-TYPE  104  115
        clus
vv       EIF4A2 MUTATED EIF4A2 WILD-TYPE
  FEMALE              3              104
  MALE                2              115
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  EIF4A2 MUTATED                      4                             0
  EIF4A2 WILD-TYPE                  124                            24
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  EIF4A2 MUTATED                       1                              0
  EIF4A2 WILD-TYPE                    56                              8
D107V5, multiclass
                                clus
vv                               EIF4A2 MUTATED EIF4A2 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  EIF4A2 MUTATED     0   1   3   1
  EIF4A2 WILD-TYPE   9  46 147  16
D107V6, multiclass
    clus
vv   EIF4A2 MUTATED EIF4A2 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              3              147
  T4              1               16
                  vv
clus                N0  N1  N2
  EIF4A2 MUTATED     4   1   0
  EIF4A2 WILD-TYPE 130  43  46
D107V7, multiclass
    clus
vv   EIF4A2 MUTATED EIF4A2 WILD-TYPE
  N0              4              130
  N1              1               43
  N2              0               46
                  vv
clus                M0  M1 M1A
  EIF4A2 MUTATED     4   1   0
  EIF4A2 WILD-TYPE 185  30   1
D107V8, multiclass
     clus
vv    EIF4A2 MUTATED EIF4A2 WILD-TYPE
  M0               4              185
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  EIF4A2 MUTATED    1  3   0  1
  EIF4A2 WILD-TYPE 47 79  60 28
D107V9, multiclass
     clus
vv    EIF4A2 MUTATED EIF4A2 WILD-TYPE
  I                1               47
  II               3               79
  III              0               60
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  EIF4A2 MUTATED     4   0   1   0
  EIF4A2 WILD-TYPE 184   2  26   1
D107V10, multiclass
    clus
vv   EIF4A2 MUTATED EIF4A2 WILD-TYPE
  R0              4              184
  R1              0                2
  R2              1               26
  RX              0                1
D107V11, continuous

Clustering(108) Variable = OR51V1 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  OR51V1 MUTATED    7  0
  OR51V1 WILD-TYPE 99 14
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               7              113 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               0               14 
$`OR51V1 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         0.99        20.98 
TCGA-AA-A01R 
       35.01 

$`OR51V1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  OR51V1 MUTATED OR51V1 WILD-TYPE 
            0.99             0.92 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
           35.01            72.07 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D108V2, continuous
D108V3, binary
                  cls
clus                 0   1
  OR51V1 MUTATED     9   0
  OR51V1 WILD-TYPE 145  68
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      9    0
  OR51V1 WILD-TYPE  145   68
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON               9              145
  RECTUM              0               68
D108V4, binary
                  cls
clus                 0   1
  OR51V1 MUTATED     6   3
  OR51V1 WILD-TYPE 101 114
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      6    3
  OR51V1 WILD-TYPE  101  114
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  FEMALE              6              101
  MALE                3              114
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR51V1 MUTATED                      4                             5
  OR51V1 WILD-TYPE                  124                            19
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR51V1 MUTATED                       0                              0
  OR51V1 WILD-TYPE                    57                              8
D108V5, multiclass
                                clus
vv                               OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               5               19
  RECTAL ADENOCARCINOMA                       0               57
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  OR51V1 MUTATED     0   0   5   3
  OR51V1 WILD-TYPE   9  47 145  14
D108V6, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              5              145
  T4              3               14
                  vv
clus                N0  N1  N2
  OR51V1 MUTATED     8   0   1
  OR51V1 WILD-TYPE 126  44  45
D108V7, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  N0              8              126
  N1              0               44
  N2              1               45
                  vv
clus                M0  M1 M1A
  OR51V1 MUTATED     9   0   0
  OR51V1 WILD-TYPE 180  31   1
D108V8, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  M0               9              180
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  OR51V1 MUTATED    0  8   1  0
  OR51V1 WILD-TYPE 48 74  59 29
D108V9, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  I                0               48
  II               8               74
  III              1               59
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  OR51V1 MUTATED     9   0   0   0
  OR51V1 WILD-TYPE 179   2  27   1
D108V10, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  R0              9              179
  R1              0                2
  R2              0               27
  RX              0                1
D108V11, continuous

Clustering(109) Variable = ZC3H13 MUTATION ANALYSIS
D109V1, survival
                  sevent
clus2               0  1
  ZC3H13 MUTATED   14  1
  ZC3H13 WILD-TYPE 92 13
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              15              105 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
               1               13 
$`ZC3H13 MUTATED`
TCGA-A6-2677 TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
       17.79         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01F TCGA-AA-A01Q TCGA-AA-A01R TCGA-AF-2691 
        0.99        20.98        13.02         1.02        35.01        10.62 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A02N 
        1.02        20.94        61.94 

$`ZC3H13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G 
       17.00        14.99        21.99        15.02         0.99        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02        38.07         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
       16.31         0.95        15.85        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
            0.99             0.92 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
           61.94            72.07 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
           10.62            10.98 
[1] "1.0 - 61.9 (10.6)" "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
[1] "hr=" "1.8"
D109V2, continuous
D109V3, binary
                  cls
clus                 0   1
  ZC3H13 MUTATED    17   4
  ZC3H13 WILD-TYPE 137  64
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     17    4
  ZC3H13 WILD-TYPE  137   64
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON              17              137
  RECTUM              4               64
D109V4, binary
                  cls
clus                 0   1
  ZC3H13 MUTATED    10  11
  ZC3H13 WILD-TYPE  97 106
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     10   11
  ZC3H13 WILD-TYPE   97  106
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  FEMALE             10               97
  MALE               11              106
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZC3H13 MUTATED                     10                             6
  ZC3H13 WILD-TYPE                  118                            18
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZC3H13 MUTATED                       4                              0
  ZC3H13 WILD-TYPE                    53                              8
D109V5, multiclass
                                clus
vv                               ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               6               18
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ZC3H13 MUTATED     2   4  11   4
  ZC3H13 WILD-TYPE   7  43 139  13
D109V6, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  T1              2                7
  T2              4               43
  T3             11              139
  T4              4               13
                  vv
clus                N0  N1  N2
  ZC3H13 MUTATED    15   3   3
  ZC3H13 WILD-TYPE 119  41  43
D109V7, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  N0             15              119
  N1              3               41
  N2              3               43
                  vv
clus                M0  M1 M1A
  ZC3H13 MUTATED    20   0   0
  ZC3H13 WILD-TYPE 169  31   1
D109V8, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  M0              20              169
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  ZC3H13 MUTATED    5  9   6  0
  ZC3H13 WILD-TYPE 43 73  54 29
D109V9, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  I                5               43
  II               9               73
  III              6               54
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  ZC3H13 MUTATED    19   0   0   0
  ZC3H13 WILD-TYPE 169   2  27   1
D109V10, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  R0             19              169
  R1              0                2
  R2              0               27
  RX              0                1
D109V11, continuous

Clustering(110) Variable = CDH11 MUTATION ANALYSIS
D110V1, survival
                 sevent
clus2              0  1
  CDH11 MUTATED    9  2
  CDH11 WILD-TYPE 97 12
  CDH11 MUTATED CDH11 WILD-TYPE 
             11             109 
  CDH11 MUTATED CDH11 WILD-TYPE 
              2              12 
$`CDH11 MUTATED`
TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         0.99         0.99         1.02         4.01 
TCGA-AA-A00U TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A02Y TCGA-AG-A002 
       17.00        38.07         1.02        39.95        20.94 

$`CDH11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
        0.99        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        40.96        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CDH11 MUTATED CDH11 WILD-TYPE 
           0.99            0.92 
  CDH11 MUTATED CDH11 WILD-TYPE 
          39.95           72.07 
  CDH11 MUTATED CDH11 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
[1] "hr=" "1.8"
D110V2, continuous
D110V3, binary
                 cls
clus                0   1
  CDH11 MUTATED    13   1
  CDH11 WILD-TYPE 141  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     13    1
  CDH11 WILD-TYPE  141   67
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  COLON             13             141
  RECTUM             1              67
D110V4, binary
                 cls
clus                0   1
  CDH11 MUTATED     5   9
  CDH11 WILD-TYPE 102 108
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED      5    9
  CDH11 WILD-TYPE  102  108
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CDH11 MUTATED                     11                             2
  CDH11 WILD-TYPE                  117                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CDH11 MUTATED                       1                              0
  CDH11 WILD-TYPE                    56                              8
D110V5, multiclass
                                clus
vv                               CDH11 MUTATED CDH11 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CDH11 MUTATED     0   4   9   1
  CDH11 WILD-TYPE   9  43 141  16
D110V6, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             1              16
                 vv
clus               N0  N1  N2
  CDH11 MUTATED     7   4   3
  CDH11 WILD-TYPE 127  40  43
D110V7, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  N0             7             127
  N1             4              40
  N2             3              43
                 vv
clus               M0  M1 M1A
  CDH11 MUTATED    11   2   0
  CDH11 WILD-TYPE 178  29   1
D110V8, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  M0             11             178
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  CDH11 MUTATED    2  4   5  2
  CDH11 WILD-TYPE 46 78  55 27
D110V9, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  I               2              46
  II              4              78
  III             5              55
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  CDH11 MUTATED    11   0   2   0
  CDH11 WILD-TYPE 177   2  25   1
D110V10, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  R0            11             177
  R1             0               2
  R2             2              25
  RX             0               1
D110V11, continuous

Clustering(111) Variable = CHST9 MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2               0   1
  CHST9 MUTATED     4   2
  CHST9 WILD-TYPE 102  12
  CHST9 MUTATED CHST9 WILD-TYPE 
              6             114 
  CHST9 MUTATED CHST9 WILD-TYPE 
              2              12 
$`CHST9 MUTATED`
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A024 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02         4.01        39.06         1.02        20.94 

$`CHST9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        26.01        20.98        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CHST9 MUTATED CHST9 WILD-TYPE 
           0.99            0.92 
  CHST9 MUTATED CHST9 WILD-TYPE 
          39.06           72.07 
  CHST9 MUTATED CHST9 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 39.1 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE"   "CHST9 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHST9 WILD-TYPE"   "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHST9 MUTATED" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" "CHST9 WILD-TYPE" 
[1] "hr=" "3"  
D111V2, continuous
D111V3, binary
                 cls
clus                0   1
  CHST9 MUTATED     5   3
  CHST9 WILD-TYPE 149  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      5    3
  CHST9 WILD-TYPE  149   65
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D111V4, binary
                 cls
clus                0   1
  CHST9 MUTATED     3   5
  CHST9 WILD-TYPE 104 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHST9 MUTATED      3    5
  CHST9 WILD-TYPE  104  112
        clus
vv       CHST9 MUTATED CHST9 WILD-TYPE
  FEMALE             3             104
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CHST9 MUTATED                      2                             3
  CHST9 WILD-TYPE                  126                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CHST9 MUTATED                       3                              0
  CHST9 WILD-TYPE                    54                              8
D111V5, multiclass
                                clus
vv                               CHST9 MUTATED CHST9 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CHST9 MUTATED     1   2   4   1
  CHST9 WILD-TYPE   8  45 146  16
D111V6, multiclass
    clus
vv   CHST9 MUTATED CHST9 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             4             146
  T4             1              16
                 vv
clus               N0  N1  N2
  CHST9 MUTATED     6   1   1
  CHST9 WILD-TYPE 128  43  45
D111V7, multiclass
    clus
vv   CHST9 MUTATED CHST9 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  CHST9 MUTATED     6   1   0
  CHST9 WILD-TYPE 183  30   1
D111V8, multiclass
     clus
vv    CHST9 MUTATED CHST9 WILD-TYPE
  M0              6             183
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  CHST9 MUTATED    2  3   1  1
  CHST9 WILD-TYPE 46 79  59 28
D111V9, multiclass
     clus
vv    CHST9 MUTATED CHST9 WILD-TYPE
  I               2              46
  II              3              79
  III             1              59
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  CHST9 MUTATED     7   0   0   0
  CHST9 WILD-TYPE 181   2  27   1
D111V10, multiclass
    clus
vv   CHST9 MUTATED CHST9 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             0              27
  RX             0               1
D111V11, continuous

Clustering(112) Variable = HTR3B MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2               0   1
  HTR3B MUTATED     4   1
  HTR3B WILD-TYPE 102  13
  HTR3B MUTATED HTR3B WILD-TYPE 
              5             115 
  HTR3B MUTATED HTR3B WILD-TYPE 
              1              13 
$`HTR3B MUTATED`
TCGA-AA-3562 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 TCGA-AG-A01L 
        1.02         4.01        20.98        20.94        12.00 

$`HTR3B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       15.91        13.02         1.02        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  HTR3B MUTATED HTR3B WILD-TYPE 
           1.02            0.92 
  HTR3B MUTATED HTR3B WILD-TYPE 
          20.98           72.07 
  HTR3B MUTATED HTR3B WILD-TYPE 
          12.00           10.92 
[1] "1.0 - 21.0 (12.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"HTR3B WILD-TYPE"   "HTR3B MUTATED" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" "HTR3B WILD-TYPE" 
[1] "hr=" "1.8"
D112V2, continuous
D112V3, binary
                 cls
clus                0   1
  HTR3B MUTATED     4   2
  HTR3B WILD-TYPE 150  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR3B MUTATED      4    2
  HTR3B WILD-TYPE  150   66
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D112V4, binary
                 cls
clus                0   1
  HTR3B MUTATED     2   4
  HTR3B WILD-TYPE 105 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR3B MUTATED      2    4
  HTR3B WILD-TYPE  105  113
        clus
vv       HTR3B MUTATED HTR3B WILD-TYPE
  FEMALE             2             105
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  HTR3B MUTATED                      3                             1
  HTR3B WILD-TYPE                  125                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  HTR3B MUTATED                       2                              0
  HTR3B WILD-TYPE                    55                              8
D112V5, multiclass
                                clus
vv                               HTR3B MUTATED HTR3B WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  HTR3B MUTATED     0   1   3   2
  HTR3B WILD-TYPE   9  46 147  15
D112V6, multiclass
    clus
vv   HTR3B MUTATED HTR3B WILD-TYPE
  T1             0               9
  T2             1              46
  T3             3             147
  T4             2              15
                 vv
clus               N0  N1  N2
  HTR3B MUTATED     3   2   1
  HTR3B WILD-TYPE 131  42  45
D112V7, multiclass
    clus
vv   HTR3B MUTATED HTR3B WILD-TYPE
  N0             3             131
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  HTR3B MUTATED     6   0   0
  HTR3B WILD-TYPE 183  31   1
D112V8, multiclass
     clus
vv    HTR3B MUTATED HTR3B WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  HTR3B MUTATED    1  2   3  0
  HTR3B WILD-TYPE 47 80  57 29
D112V9, multiclass
     clus
vv    HTR3B MUTATED HTR3B WILD-TYPE
  I               1              47
  II              2              80
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  HTR3B MUTATED     6   0   0   0
  HTR3B WILD-TYPE 182   2  27   1
D112V10, multiclass
    clus
vv   HTR3B MUTATED HTR3B WILD-TYPE
  R0             6             182
  R1             0               2
  R2             0              27
  RX             0               1
D112V11, continuous

Clustering(113) Variable = LRRIQ3 MUTATION ANALYSIS
D113V1, survival
                  sevent
clus2                0   1
  LRRIQ3 MUTATED     5   0
  LRRIQ3 WILD-TYPE 101  14
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               5              115 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               0               14 
$`LRRIQ3 MUTATED`
TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02        20.98         1.02        20.94 

$`LRRIQ3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            0.99             0.92 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           20.98            72.07 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D113V2, continuous
D113V3, binary
                  cls
clus                 0   1
  LRRIQ3 MUTATED     7   3
  LRRIQ3 WILD-TYPE 147  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      7    3
  LRRIQ3 WILD-TYPE  147   65
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON               7              147
  RECTUM              3               65
D113V4, binary
                  cls
clus                 0   1
  LRRIQ3 MUTATED     8   2
  LRRIQ3 WILD-TYPE  99 115
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      8    2
  LRRIQ3 WILD-TYPE   99  115
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              8               99
  MALE                2              115
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LRRIQ3 MUTATED                      6                             1
  LRRIQ3 WILD-TYPE                  122                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LRRIQ3 MUTATED                       2                              0
  LRRIQ3 WILD-TYPE                    55                              8
D113V5, multiclass
                                clus
vv                               LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON ADENOCARCINOMA                        6              122
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  LRRIQ3 MUTATED     1   2   5   2
  LRRIQ3 WILD-TYPE   8  45 145  15
D113V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              1                8
  T2              2               45
  T3              5              145
  T4              2               15
                  vv
clus                N0  N1  N2
  LRRIQ3 MUTATED     6   2   2
  LRRIQ3 WILD-TYPE 128  42  44
D113V7, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              2               44
                  vv
clus                M0  M1 M1A
  LRRIQ3 MUTATED     9   1   0
  LRRIQ3 WILD-TYPE 180  30   1
D113V8, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0               9              180
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  LRRIQ3 MUTATED    3  3   3  1
  LRRIQ3 WILD-TYPE 45 79  57 28
D113V9, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  I                3               45
  II               3               79
  III              3               57
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  LRRIQ3 MUTATED     7   0   1   0
  LRRIQ3 WILD-TYPE 181   2  26   1
D113V10, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  R0              7              181
  R1              0                2
  R2              1               26
  RX              0                1
D113V11, continuous

Clustering(114) Variable = HCN1 MUTATION ANALYSIS
D114V1, survival
                sevent
clus2              0   1
  HCN1 MUTATED     5   0
  HCN1 WILD-TYPE 101  14
  HCN1 MUTATED HCN1 WILD-TYPE 
             5            115 
  HCN1 MUTATED HCN1 WILD-TYPE 
             0             14 
$`HCN1 MUTATED`
TCGA-A6-2676 TCGA-AA-A00J TCGA-AA-A00Z TCGA-AG-A002 TCGA-AG-A02N 
       14.70        18.02        21.99        20.94        61.94 

$`HCN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  HCN1 MUTATED HCN1 WILD-TYPE 
         14.70           0.92 
  HCN1 MUTATED HCN1 WILD-TYPE 
         61.94          72.07 
  HCN1 MUTATED HCN1 WILD-TYPE 
         20.94          10.39 
[1] "14.7 - 61.9 (20.9)" "0.9 - 72.1 (10.4)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" "HCN1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE"   "HCN1 MUTATED" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "HCN1 MUTATED" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" "HCN1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D114V2, continuous
D114V3, binary
                cls
clus               0   1
  HCN1 MUTATED     8   2
  HCN1 WILD-TYPE 146  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      8    2
  HCN1 WILD-TYPE  146   66
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  COLON             8            146
  RECTUM            2             66
D114V4, binary
                cls
clus               0   1
  HCN1 MUTATED     5   5
  HCN1 WILD-TYPE 102 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  HCN1 MUTATED      5    5
  HCN1 WILD-TYPE  102  112
        clus
vv       HCN1 MUTATED HCN1 WILD-TYPE
  FEMALE            5            102
  MALE              5            112
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  HCN1 MUTATED                      6                             2
  HCN1 WILD-TYPE                  122                            22
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  HCN1 MUTATED                       2                              0
  HCN1 WILD-TYPE                    55                              8
D114V5, multiclass
                                clus
vv                               HCN1 MUTATED HCN1 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  HCN1 MUTATED     0   2   5   2
  HCN1 WILD-TYPE   9  45 145  15
D114V6, multiclass
    clus
vv   HCN1 MUTATED HCN1 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            5            145
  T4            2             15
                vv
clus              N0  N1  N2
  HCN1 MUTATED     8   1   1
  HCN1 WILD-TYPE 126  43  45
D114V7, multiclass
    clus
vv   HCN1 MUTATED HCN1 WILD-TYPE
  N0            8            126
  N1            1             43
  N2            1             45
                vv
clus              M0  M1 M1A
  HCN1 MUTATED     9   1   0
  HCN1 WILD-TYPE 180  30   1
D114V8, multiclass
     clus
vv    HCN1 MUTATED HCN1 WILD-TYPE
  M0             9            180
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  HCN1 MUTATED    2  6   1  1
  HCN1 WILD-TYPE 46 76  59 28
D114V9, multiclass
     clus
vv    HCN1 MUTATED HCN1 WILD-TYPE
  I              2             46
  II             6             76
  III            1             59
  IV             1             28
                vv
clus              R0  R1  R2  RX
  HCN1 MUTATED     9   0   1   0
  HCN1 WILD-TYPE 179   2  26   1
D114V10, multiclass
    clus
vv   HCN1 MUTATED HCN1 WILD-TYPE
  R0            9            179
  R1            0              2
  R2            1             26
  RX            0              1
D114V11, continuous

Clustering(115) Variable = CHRM2 MUTATION ANALYSIS
D115V1, survival
                 sevent
clus2               0   1
  CHRM2 MUTATED     4   1
  CHRM2 WILD-TYPE 102  13
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              5             115 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              1              13 
$`CHRM2 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 
        1.02         0.99         4.01        20.98        20.94 

$`CHRM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CHRM2 MUTATED CHRM2 WILD-TYPE 
           0.99            0.92 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
          20.98           72.07 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
           4.01           10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
[1] "hr=" "2.2"
D115V2, continuous
D115V3, binary
                 cls
clus                0   1
  CHRM2 MUTATED     8   2
  CHRM2 WILD-TYPE 146  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      8    2
  CHRM2 WILD-TYPE  146   66
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D115V4, binary
                 cls
clus                0   1
  CHRM2 MUTATED     6   4
  CHRM2 WILD-TYPE 101 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      6    4
  CHRM2 WILD-TYPE  101  113
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  FEMALE             6             101
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CHRM2 MUTATED                      6                             2
  CHRM2 WILD-TYPE                  122                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CHRM2 MUTATED                       2                              0
  CHRM2 WILD-TYPE                    55                              8
D115V5, multiclass
                                clus
vv                               CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CHRM2 MUTATED     0   1   5   4
  CHRM2 WILD-TYPE   9  46 145  13
D115V6, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             5             145
  T4             4              13
                 vv
clus               N0  N1  N2
  CHRM2 MUTATED     7   1   2
  CHRM2 WILD-TYPE 127  43  44
D115V7, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
                 vv
clus               M0  M1 M1A
  CHRM2 MUTATED     7   3   0
  CHRM2 WILD-TYPE 182  28   1
D115V8, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  M0              7             182
  M1              3              28
  M1A             0               1
                 vv
clus               I II III IV
  CHRM2 MUTATED    1  6   0  3
  CHRM2 WILD-TYPE 47 76  60 26
D115V9, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  I               1              47
  II              6              76
  III             0              60
  IV              3              26
                 vv
clus               R0  R1  R2  RX
  CHRM2 MUTATED     7   0   3   0
  CHRM2 WILD-TYPE 181   2  24   1
D115V10, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             3              24
  RX             0               1
D115V11, continuous

Clustering(116) Variable = CSMD3 MUTATION ANALYSIS
D116V1, survival
                 sevent
clus2              0  1
  CSMD3 MUTATED   17  1
  CSMD3 WILD-TYPE 89 13
  CSMD3 MUTATED CSMD3 WILD-TYPE 
             18             102 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
              1              13 
$`CSMD3 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E 
       14.70         0.99         0.99         1.02         1.02        30.02 
TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01Z TCGA-AG-3892 
       18.02         4.01        20.98         1.02        20.98         1.02 
TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A011 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A02N 
        1.02        20.94        17.03        12.00        70.03        61.94 

$`CSMD3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01Y TCGA-AG-A020 
       23.01        15.91        13.02         1.02        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  CSMD3 MUTATED CSMD3 WILD-TYPE 
           0.99            0.92 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          70.03           72.07 
  CSMD3 MUTATED CSMD3 WILD-TYPE 
          13.35           10.77 
[1] "1.0 - 70.0 (13.3)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CSMD3 WILD-TYPE"   "CSMD3 MUTATED"   "CSMD3 MUTATED" "CSMD3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "CSMD3 MUTATED" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" "CSMD3 WILD-TYPE" 
[1] "hr=" "2.6"
D116V2, continuous
D116V3, binary
                 cls
clus                0   1
  CSMD3 MUTATED    19   9
  CSMD3 WILD-TYPE 135  59
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     19    9
  CSMD3 WILD-TYPE  135   59
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON             19             135
  RECTUM             9              59
D116V4, binary
                 cls
clus                0   1
  CSMD3 MUTATED    14  14
  CSMD3 WILD-TYPE  93 103
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD3 MUTATED     14   14
  CSMD3 WILD-TYPE   93  103
        clus
vv       CSMD3 MUTATED CSMD3 WILD-TYPE
  FEMALE            14              93
  MALE              14             103
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CSMD3 MUTATED                     11                             8
  CSMD3 WILD-TYPE                  117                            16
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CSMD3 MUTATED                       9                              0
  CSMD3 WILD-TYPE                    48                              8
D116V5, multiclass
                                clus
vv                               CSMD3 MUTATED CSMD3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              8              16
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CSMD3 MUTATED     1   3  17   6
  CSMD3 WILD-TYPE   8  44 133  11
D116V6, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  T1             1               8
  T2             3              44
  T3            17             133
  T4             6              11
                 vv
clus               N0  N1  N2
  CSMD3 MUTATED    21   4   3
  CSMD3 WILD-TYPE 113  40  43
D116V7, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  N0            21             113
  N1             4              40
  N2             3              43
                 vv
clus               M0  M1 M1A
  CSMD3 MUTATED    24   3   0
  CSMD3 WILD-TYPE 165  28   1
D116V8, multiclass
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  M0             24             165
  M1              3              28
  M1A             0               1
                 vv
clus               I II III IV
  CSMD3 MUTATED    3 17   4  3
  CSMD3 WILD-TYPE 45 65  56 26
D116V9, multiclass
     clus
vv    CSMD3 MUTATED CSMD3 WILD-TYPE
  I               3              45
  II             17              65
  III             4              56
  IV              3              26
                 vv
clus               R0  R1  R2  RX
  CSMD3 MUTATED    22   0   3   0
  CSMD3 WILD-TYPE 166   2  24   1
D116V10, multiclass
    clus
vv   CSMD3 MUTATED CSMD3 WILD-TYPE
  R0            22             166
  R1             0               2
  R2             3              24
  RX             0               1
D116V11, continuous

Clustering(117) Variable = DCAF4L2 MUTATION ANALYSIS
D117V1, survival
                   sevent
clus2                 0   1
  DCAF4L2 MUTATED     6   1
  DCAF4L2 WILD-TYPE 100  13
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                7               113 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                1                13 
$`DCAF4L2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W TCGA-AG-3892 
        1.02         1.02         4.01        35.01        40.96         1.02 
TCGA-AG-A002 
       20.94 

$`DCAF4L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             1.02              0.92 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
            40.96             72.07 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             4.01             10.98 
[1] "1.0 - 41.0 (4.0)"  "0.9 - 72.1 (11.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
[1] "hr=" "1.1"
D117V2, continuous
D117V3, binary
                   cls
clus                  0   1
  DCAF4L2 MUTATED     9   2
  DCAF4L2 WILD-TYPE 145  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      9    2
  DCAF4L2 WILD-TYPE  145   66
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON                9               145
  RECTUM               2                66
D117V4, binary
                   cls
clus                  0   1
  DCAF4L2 MUTATED     5   6
  DCAF4L2 WILD-TYPE 102 111
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      5    6
  DCAF4L2 WILD-TYPE  102  111
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  FEMALE               5               102
  MALE                 6               111
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DCAF4L2 MUTATED                      4                             4
  DCAF4L2 WILD-TYPE                  124                            20
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DCAF4L2 MUTATED                       2                              0
  DCAF4L2 WILD-TYPE                    55                              8
D117V5, multiclass
                                clus
vv                               DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON ADENOCARCINOMA                         4               124
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  DCAF4L2 MUTATED     1   5   3   2
  DCAF4L2 WILD-TYPE   8  42 147  15
D117V6, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  T1               1                 8
  T2               5                42
  T3               3               147
  T4               2                15
                   vv
clus                 N0  N1  N2
  DCAF4L2 MUTATED     8   2   1
  DCAF4L2 WILD-TYPE 126  42  45
D117V7, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  N0               8               126
  N1               2                42
  N2               1                45
                   vv
clus                 M0  M1 M1A
  DCAF4L2 MUTATED    10   0   0
  DCAF4L2 WILD-TYPE 179  31   1
D117V8, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  M0               10               179
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  DCAF4L2 MUTATED    4  3   3  0
  DCAF4L2 WILD-TYPE 44 79  57 29
D117V9, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  I                 4                44
  II                3                79
  III               3                57
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  DCAF4L2 MUTATED    10   0   0   0
  DCAF4L2 WILD-TYPE 178   2  27   1
D117V10, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  R0              10               178
  R1               0                 2
  R2               0                27
  RX               0                 1
D117V11, continuous

Clustering(118) Variable = DACH2 MUTATION ANALYSIS
D118V1, survival
                 sevent
clus2              0  1
  DACH2 MUTATED    7  0
  DACH2 WILD-TYPE 99 14
  DACH2 MUTATED DACH2 WILD-TYPE 
              7             113 
  DACH2 MUTATED DACH2 WILD-TYPE 
              0              14 
$`DACH2 MUTATED`
TCGA-AA-3518 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00R TCGA-AA-A010 TCGA-AG-A002 
        1.02         1.02        18.02         0.99        20.98        20.94 
TCGA-AG-A032 
       38.01 

$`DACH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A036 
        1.94        38.93        61.94        40.96        72.07 

  DACH2 MUTATED DACH2 WILD-TYPE 
           0.99            0.92 
  DACH2 MUTATED DACH2 WILD-TYPE 
          38.01           72.07 
  DACH2 MUTATED DACH2 WILD-TYPE 
          18.02           10.92 
[1] "1.0 - 38.0 (18.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D118V2, continuous
D118V3, binary
                 cls
clus                0   1
  DACH2 MUTATED     8   4
  DACH2 WILD-TYPE 146  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      8    4
  DACH2 WILD-TYPE  146   64
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  COLON              8             146
  RECTUM             4              64
D118V4, binary
                 cls
clus                0   1
  DACH2 MUTATED     7   5
  DACH2 WILD-TYPE 100 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      7    5
  DACH2 WILD-TYPE  100  112
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DACH2 MUTATED                      7                             1
  DACH2 WILD-TYPE                  121                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DACH2 MUTATED                       4                              0
  DACH2 WILD-TYPE                    53                              8
D118V5, multiclass
                                clus
vv                               DACH2 MUTATED DACH2 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  DACH2 MUTATED     0   4   5   3
  DACH2 WILD-TYPE   9  43 145  14
D118V6, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             5             145
  T4             3              14
                 vv
clus               N0  N1  N2
  DACH2 MUTATED     9   3   0
  DACH2 WILD-TYPE 125  41  46
D118V7, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  N0             9             125
  N1             3              41
  N2             0              46
                 vv
clus               M0  M1 M1A
  DACH2 MUTATED    10   1   0
  DACH2 WILD-TYPE 179  30   1
D118V8, multiclass
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  DACH2 MUTATED    3  5   2  1
  DACH2 WILD-TYPE 45 77  58 28
D118V9, multiclass
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  I               3              45
  II              5              77
  III             2              58
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  DACH2 MUTATED    10   0   1   0
  DACH2 WILD-TYPE 178   2  26   1
D118V10, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             1              26
  RX             0               1
D118V11, continuous

Clustering(119) Variable = DOCK2 MUTATION ANALYSIS
D119V1, survival
                 sevent
clus2              0  1
  DOCK2 MUTATED   12  1
  DOCK2 WILD-TYPE 94 13
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             13             107 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
              1              13 
$`DOCK2 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        19.00        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01V TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A020 
        4.01        20.98        35.01         1.02        20.94        10.98 
TCGA-AG-A02N 
       61.94 

$`DOCK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        18.02        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 
       13.02         1.02        12.00        70.03        63.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  DOCK2 MUTATED DOCK2 WILD-TYPE 
           0.99            0.92 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
          61.94           72.07 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
          10.98           10.92 
[1] "1.0 - 61.9 (11.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
[1] "hr=" "1.7"
D119V2, continuous
D119V3, binary
                 cls
clus                0   1
  DOCK2 MUTATED    16   5
  DOCK2 WILD-TYPE 138  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     16    5
  DOCK2 WILD-TYPE  138   63
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON             16             138
  RECTUM             5              63
D119V4, binary
                 cls
clus                0   1
  DOCK2 MUTATED    10  11
  DOCK2 WILD-TYPE  97 106
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     10   11
  DOCK2 WILD-TYPE   97  106
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  FEMALE            10              97
  MALE              11             106
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DOCK2 MUTATED                     11                             4
  DOCK2 WILD-TYPE                  117                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DOCK2 MUTATED                       4                              1
  DOCK2 WILD-TYPE                    53                              7
D119V5, multiclass
                                clus
vv                               DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  DOCK2 MUTATED     1   4  12   4
  DOCK2 WILD-TYPE   8  43 138  13
D119V6, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  T1             1               8
  T2             4              43
  T3            12             138
  T4             4              13
                 vv
clus               N0  N1  N2
  DOCK2 MUTATED    16   2   3
  DOCK2 WILD-TYPE 118  42  43
D119V7, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  N0            16             118
  N1             2              42
  N2             3              43
                 vv
clus               M0  M1 M1A
  DOCK2 MUTATED    20   0   0
  DOCK2 WILD-TYPE 169  31   1
D119V8, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  M0             20             169
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  DOCK2 MUTATED    4 11   5  0
  DOCK2 WILD-TYPE 44 71  55 29
D119V9, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  I               4              44
  II             11              71
  III             5              55
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  DOCK2 MUTATED    19   0   0   0
  DOCK2 WILD-TYPE 169   2  27   1
D119V10, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  R0            19             169
  R1             0               2
  R2             0              27
  RX             0               1
D119V11, continuous

Clustering(120) Variable = PCDH11X MUTATION ANALYSIS
D120V1, survival
                   sevent
clus2                0  1
  PCDH11X MUTATED    7  4
  PCDH11X WILD-TYPE 99 10
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               109 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                4                10 
$`PCDH11X MUTATED`
TCGA-A6-3810 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3952 TCGA-AA-3977 
        8.09         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F TCGA-AG-3892 TCGA-AG-A026 
        4.01        20.98        18.02         1.02         1.94 

$`PCDH11X WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  PCDH11X MUTATED PCDH11X WILD-TYPE 
             0.99              0.92 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
            20.98             72.07 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
[1] "hr=" "8.4"
D120V2, continuous
D120V3, binary
                   cls
clus                  0   1
  PCDH11X MUTATED    11   3
  PCDH11X WILD-TYPE 143  65
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     11    3
  PCDH11X WILD-TYPE  143   65
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON               11               143
  RECTUM               3                65
D120V4, binary
                   cls
clus                  0   1
  PCDH11X MUTATED     6   8
  PCDH11X WILD-TYPE 101 109
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      6    8
  PCDH11X WILD-TYPE  101  109
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  FEMALE               6               101
  MALE                 8               109
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PCDH11X MUTATED                      8                             3
  PCDH11X WILD-TYPE                  120                            21
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PCDH11X MUTATED                       3                              0
  PCDH11X WILD-TYPE                    54                              8
D120V5, multiclass
                                clus
vv                               PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON ADENOCARCINOMA                         8               120
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  PCDH11X MUTATED     2   2   7   3
  PCDH11X WILD-TYPE   7  45 143  14
D120V6, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  T1               2                 7
  T2               2                45
  T3               7               143
  T4               3                14
                   vv
clus                 N0  N1  N2
  PCDH11X MUTATED    12   0   2
  PCDH11X WILD-TYPE 122  44  44
D120V7, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  N0              12               122
  N1               0                44
  N2               2                44
                   vv
clus                 M0  M1 M1A
  PCDH11X MUTATED    13   0   0
  PCDH11X WILD-TYPE 176  31   1
D120V8, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  M0               13               176
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  PCDH11X MUTATED    3  8   2  0
  PCDH11X WILD-TYPE 45 74  58 29
D120V9, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  I                 3                45
  II                8                74
  III               2                58
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  PCDH11X MUTATED    12   1   0   0
  PCDH11X WILD-TYPE 176   1  27   1
D120V10, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  R0              12               176
  R1               1                 1
  R2               0                27
  RX               0                 1
D120V11, continuous

Clustering(121) Variable = KCNA4 MUTATION ANALYSIS
D121V1, survival
                 sevent
clus2              0  1
  KCNA4 MUTATED    7  1
  KCNA4 WILD-TYPE 99 13
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              8             112 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              1              13 
$`KCNA4 MUTATED`
TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W 
        0.99         0.99         1.02         4.01        35.01        40.96 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`KCNA4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  KCNA4 MUTATED KCNA4 WILD-TYPE 
           0.99            0.92 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          40.96           72.07 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 41.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
[1] "hr=" "1.1"
D121V2, continuous
D121V3, binary
                 cls
clus                0   1
  KCNA4 MUTATED    10   2
  KCNA4 WILD-TYPE 144  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED     10    2
  KCNA4 WILD-TYPE  144   66
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D121V4, binary
                 cls
clus                0   1
  KCNA4 MUTATED     7   5
  KCNA4 WILD-TYPE 100 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      7    5
  KCNA4 WILD-TYPE  100  112
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  FEMALE             7             100
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  KCNA4 MUTATED                      6                             4
  KCNA4 WILD-TYPE                  122                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  KCNA4 MUTATED                       2                              0
  KCNA4 WILD-TYPE                    55                              8
D121V5, multiclass
                                clus
vv                               KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  KCNA4 MUTATED     1   2   8   1
  KCNA4 WILD-TYPE   8  45 142  16
D121V6, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             8             142
  T4             1              16
                 vv
clus               N0  N1  N2
  KCNA4 MUTATED     9   2   1
  KCNA4 WILD-TYPE 125  42  45
D121V7, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  KCNA4 MUTATED    12   0   0
  KCNA4 WILD-TYPE 177  31   1
D121V8, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  KCNA4 MUTATED    3  6   3  0
  KCNA4 WILD-TYPE 45 76  57 29
D121V9, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  I               3              45
  II              6              76
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  KCNA4 MUTATED    11   0   0   0
  KCNA4 WILD-TYPE 177   2  27   1
D121V10, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  R0            11             177
  R1             0               2
  R2             0              27
  RX             0               1
D121V11, continuous

Clustering(122) Variable = DPP10 MUTATION ANALYSIS
D122V1, survival
                 sevent
clus2              0  1
  DPP10 MUTATED    7  1
  DPP10 WILD-TYPE 99 13
  DPP10 MUTATED DPP10 WILD-TYPE 
              8             112 
  DPP10 MUTATED DPP10 WILD-TYPE 
              1              13 
$`DPP10 MUTATED`
TCGA-AA-3848 TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01R TCGA-AG-3892 
        0.99         4.01        27.02        20.98        35.01         1.02 
TCGA-AG-A002 TCGA-AG-A01W 
       20.94        70.03 

$`DPP10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  DPP10 MUTATED DPP10 WILD-TYPE 
           0.99            0.92 
  DPP10 MUTATED DPP10 WILD-TYPE 
          70.03           72.07 
  DPP10 MUTATED DPP10 WILD-TYPE 
          20.96           10.77 
[1] "1.0 - 70.0 (21.0)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
[1] "hr=" "1.2"
D122V2, continuous
D122V3, binary
                 cls
clus                0   1
  DPP10 MUTATED     9   4
  DPP10 WILD-TYPE 145  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      9    4
  DPP10 WILD-TYPE  145   64
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D122V4, binary
                 cls
clus                0   1
  DPP10 MUTATED     7   6
  DPP10 WILD-TYPE 100 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      7    6
  DPP10 WILD-TYPE  100  111
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DPP10 MUTATED                      6                             3
  DPP10 WILD-TYPE                  122                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DPP10 MUTATED                       4                              0
  DPP10 WILD-TYPE                    53                              8
D122V5, multiclass
                                clus
vv                               DPP10 MUTATED DPP10 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  DPP10 MUTATED     1   3   7   2
  DPP10 WILD-TYPE   8  44 143  15
D122V6, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             7             143
  T4             2              15
                 vv
clus               N0  N1  N2
  DPP10 MUTATED     8   1   4
  DPP10 WILD-TYPE 126  43  42
D122V7, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  N0             8             126
  N1             1              43
  N2             4              42
                 vv
clus               M0  M1 M1A
  DPP10 MUTATED    13   0   0
  DPP10 WILD-TYPE 176  31   1
D122V8, multiclass
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  M0             13             176
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  DPP10 MUTATED    3  5   5  0
  DPP10 WILD-TYPE 45 77  55 29
D122V9, multiclass
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  I               3              45
  II              5              77
  III             5              55
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  DPP10 MUTATED    13   0   0   0
  DPP10 WILD-TYPE 175   2  27   1
D122V10, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  R0            13             175
  R1             0               2
  R2             0              27
  RX             0               1
D122V11, continuous

Clustering(123) Variable = EVC2 MUTATION ANALYSIS
D123V1, survival
                sevent
clus2             0  1
  EVC2 MUTATED    8  2
  EVC2 WILD-TYPE 98 12
  EVC2 MUTATED EVC2 WILD-TYPE 
            10            110 
  EVC2 MUTATED EVC2 WILD-TYPE 
             2             12 
$`EVC2 MUTATED`
TCGA-A6-2683 TCGA-AA-3555 TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3977 TCGA-AA-A00A 
       15.52         0.99         0.99         0.92         1.02        18.02 
TCGA-AA-A00N TCGA-AA-A01Q TCGA-AA-A024 TCGA-AG-A002 
        4.01         1.02        39.06        20.94 

$`EVC2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99         0.99        13.94        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
       13.02        12.00        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 
        1.02        33.04        35.01        26.01        20.98        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  EVC2 MUTATED EVC2 WILD-TYPE 
          0.92           0.92 
  EVC2 MUTATED EVC2 WILD-TYPE 
         39.06          72.07 
  EVC2 MUTATED EVC2 WILD-TYPE 
         2.515         11.490 
[1] "0.9 - 39.1 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
[1] "hr=" "2.1"
D123V2, continuous
D123V3, binary
                cls
clus               0   1
  EVC2 MUTATED    13   4
  EVC2 WILD-TYPE 141  64
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     13    4
  EVC2 WILD-TYPE  141   64
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  COLON            13            141
  RECTUM            4             64
D123V4, binary
                cls
clus               0   1
  EVC2 MUTATED     8   9
  EVC2 WILD-TYPE  99 108
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED      8    9
  EVC2 WILD-TYPE   99  108
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  FEMALE            8             99
  MALE              9            108
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  EVC2 MUTATED                     10                             3
  EVC2 WILD-TYPE                  118                            21
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  EVC2 MUTATED                       3                              1
  EVC2 WILD-TYPE                    54                              7
D123V5, multiclass
                                clus
vv                               EVC2 MUTATED EVC2 WILD-TYPE
  COLON ADENOCARCINOMA                     10            118
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  EVC2 MUTATED     0   2  13   2
  EVC2 WILD-TYPE   9  45 137  15
D123V6, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  T1            0              9
  T2            2             45
  T3           13            137
  T4            2             15
                vv
clus              N0  N1  N2
  EVC2 MUTATED    12   2   3
  EVC2 WILD-TYPE 122  42  43
D123V7, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  N0           12            122
  N1            2             42
  N2            3             43
                vv
clus              M0  M1 M1A
  EVC2 MUTATED    15   1   0
  EVC2 WILD-TYPE 174  30   1
D123V8, multiclass
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  M0            15            174
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  EVC2 MUTATED    1  9   5  1
  EVC2 WILD-TYPE 47 73  55 28
D123V9, multiclass
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  I              1             47
  II             9             73
  III            5             55
  IV             1             28
                vv
clus              R0  R1  R2  RX
  EVC2 MUTATED    16   0   0   0
  EVC2 WILD-TYPE 172   2  27   1
D123V10, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  R0           16            172
  R1            0              2
  R2            0             27
  RX            0              1
D123V11, continuous

Clustering(124) Variable = C15ORF2 MUTATION ANALYSIS
D124V1, survival
                   sevent
clus2                0  1
  C15ORF2 MUTATED   10  1
  C15ORF2 WILD-TYPE 96 13
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
               11               109 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
                1                13 
$`C15ORF2 MUTATED`
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A01Z 
        1.02         1.02        30.02         4.01        35.01        20.98 
TCGA-AA-A02Y TCGA-AG-A002 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A01Y 
       39.95        20.94        15.91        13.02        63.98 

$`C15ORF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       26.01        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        0.92        40.96        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 
       23.01        17.03         1.02        12.00        70.03        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
             1.02              0.92 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
            63.98             72.07 
  C15ORF2 MUTATED C15ORF2 WILD-TYPE 
            20.94             10.39 
[1] "1.0 - 64.0 (20.9)" "0.9 - 72.1 (10.4)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "C15ORF2 MUTATED" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED"   "C15ORF2 MUTATED" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE"   "C15ORF2 MUTATED" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" "C15ORF2 WILD-TYPE" 
[1] "hr=" "2"  
D124V2, continuous
D124V3, binary
                   cls
clus                  0   1
  C15ORF2 MUTATED     8   4
  C15ORF2 WILD-TYPE 146  64
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED      8    4
  C15ORF2 WILD-TYPE  146   64
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  COLON                8               146
  RECTUM               4                64
D124V4, binary
                   cls
clus                  0   1
  C15ORF2 MUTATED     4   8
  C15ORF2 WILD-TYPE 103 109
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C15ORF2 MUTATED      4    8
  C15ORF2 WILD-TYPE  103  109
        clus
vv       C15ORF2 MUTATED C15ORF2 WILD-TYPE
  FEMALE               4               103
  MALE                 8               109
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  C15ORF2 MUTATED                      5                             3
  C15ORF2 WILD-TYPE                  123                            21
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  C15ORF2 MUTATED                       4                              0
  C15ORF2 WILD-TYPE                    53                              8
D124V5, multiclass
                                clus
vv                               C15ORF2 MUTATED C15ORF2 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        4                53
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  C15ORF2 MUTATED     1   4   6   1
  C15ORF2 WILD-TYPE   8  43 144  16
D124V6, multiclass
    clus
vv   C15ORF2 MUTATED C15ORF2 WILD-TYPE
  T1               1                 8
  T2               4                43
  T3               6               144
  T4               1                16
                   vv
clus                 N0  N1  N2
  C15ORF2 MUTATED    11   0   1
  C15ORF2 WILD-TYPE 123  44  45
D124V7, multiclass
    clus
vv   C15ORF2 MUTATED C15ORF2 WILD-TYPE
  N0              11               123
  N1               0                44
  N2               1                45
                   vv
clus                 M0  M1 M1A
  C15ORF2 MUTATED    11   0   0
  C15ORF2 WILD-TYPE 178  31   1
D124V8, multiclass
     clus
vv    C15ORF2 MUTATED C15ORF2 WILD-TYPE
  M0               11               178
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  C15ORF2 MUTATED    4  6   1  0
  C15ORF2 WILD-TYPE 44 76  59 29
D124V9, multiclass
     clus
vv    C15ORF2 MUTATED C15ORF2 WILD-TYPE
  I                 4                44
  II                6                76
  III               1                59
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  C15ORF2 MUTATED    10   0   0   0
  C15ORF2 WILD-TYPE 178   2  27   1
D124V10, multiclass
    clus
vv   C15ORF2 MUTATED C15ORF2 WILD-TYPE
  R0              10               178
  R1               0                 2
  R2               0                27
  RX               0                 1
D124V11, continuous

Clustering(125) Variable = NLRP5 MUTATION ANALYSIS
D125V1, survival
                 sevent
clus2               0   1
  NLRP5 MUTATED     5   1
  NLRP5 WILD-TYPE 101  13
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              6             114 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              1              13 
$`NLRP5 MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01R TCGA-AA-A02O TCGA-AG-A002 
        4.01        20.98        12.00        35.01         0.92        20.94 

$`NLRP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  NLRP5 MUTATED NLRP5 WILD-TYPE 
           0.92            0.92 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          35.01           72.07 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          16.47           10.77 
[1] "0.9 - 35.0 (16.5)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
[1] "hr=" "1.5"
D125V2, continuous
D125V3, binary
                 cls
clus                0   1
  NLRP5 MUTATED    10   2
  NLRP5 WILD-TYPE 144  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED     10    2
  NLRP5 WILD-TYPE  144   66
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  COLON             10             144
  RECTUM             2              66
D125V4, binary
                 cls
clus                0   1
  NLRP5 MUTATED     4   8
  NLRP5 WILD-TYPE 103 109
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED      4    8
  NLRP5 WILD-TYPE  103  109
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  FEMALE             4             103
  MALE               8             109
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NLRP5 MUTATED                      7                             2
  NLRP5 WILD-TYPE                  121                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NLRP5 MUTATED                       2                              0
  NLRP5 WILD-TYPE                    55                              8
D125V5, multiclass
                                clus
vv                               NLRP5 MUTATED NLRP5 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  NLRP5 MUTATED     0   3   7   2
  NLRP5 WILD-TYPE   9  44 143  15
D125V6, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             7             143
  T4             2              15
                 vv
clus               N0  N1  N2
  NLRP5 MUTATED     9   0   3
  NLRP5 WILD-TYPE 125  44  43
D125V7, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  N0             9             125
  N1             0              44
  N2             3              43
                 vv
clus               M0  M1 M1A
  NLRP5 MUTATED    10   2   0
  NLRP5 WILD-TYPE 179  29   1
D125V8, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  M0             10             179
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  NLRP5 MUTATED    3  6   1  2
  NLRP5 WILD-TYPE 45 76  59 27
D125V9, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  I               3              45
  II              6              76
  III             1              59
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  NLRP5 MUTATED    12   0   0   0
  NLRP5 WILD-TYPE 176   2  27   1
D125V10, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             0              27
  RX             0               1
D125V11, continuous

Clustering(126) Variable = BTNL8 MUTATION ANALYSIS
D126V1, survival
                 sevent
clus2               0   1
  BTNL8 MUTATED     1   0
  BTNL8 WILD-TYPE 105  14
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              1             119 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              0              14 
$`BTNL8 MUTATED`
TCGA-AA-3710 
        1.02 

$`BTNL8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  BTNL8 MUTATED BTNL8 WILD-TYPE 
           1.02            0.92 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
           1.02           72.07 
  BTNL8 MUTATED BTNL8 WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"BTNL8 WILD-TYPE"   "BTNL8 MUTATED" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
[1] "Remove cluster labels:" "BTNL8 MUTATED"         
clus
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              1             119 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
D126V2, continuous
D126V3, binary
                 cls
clus                0   1
  BTNL8 MUTATED     3   0
  BTNL8 WILD-TYPE 151  68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      3    0
  BTNL8 WILD-TYPE  151   68
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  COLON              3             151
  RECTUM             0              68
D126V4, binary
                 cls
clus                0   1
  BTNL8 MUTATED     2   1
  BTNL8 WILD-TYPE 105 116
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BTNL8 MUTATED      2    1
  BTNL8 WILD-TYPE  105  116
        clus
vv       BTNL8 MUTATED BTNL8 WILD-TYPE
  FEMALE             2             105
  MALE               1             116
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  BTNL8 MUTATED                      2                             0
  BTNL8 WILD-TYPE                  126                            24
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  BTNL8 MUTATED                       0                              0
  BTNL8 WILD-TYPE                    57                              8
D126V5, multiclass
[1] "Remove cluster labels:" "BTNL8 MUTATED"         
clus
  BTNL8 MUTATED BTNL8 WILD-TYPE 
              2             215 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3514      TCGA-AA-3516 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3517      TCGA-AA-3518      TCGA-AA-3519      TCGA-AA-3520 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3521      TCGA-AA-3522      TCGA-AA-3524      TCGA-AA-3525 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3526      TCGA-AA-3527      TCGA-AA-3529      TCGA-AA-3531 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3532      TCGA-AA-3534      TCGA-AA-3538      TCGA-AA-3542 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3543      TCGA-AA-3544      TCGA-AA-3548      TCGA-AA-3549 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3552      TCGA-AA-3553      TCGA-AA-3554      TCGA-AA-3555 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3558      TCGA-AA-3560      TCGA-AA-3561      TCGA-AA-3562 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3664      TCGA-AA-3666      TCGA-AA-3667      TCGA-AA-3672 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3673      TCGA-AA-3678      TCGA-AA-3679      TCGA-AA-3680 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3681      TCGA-AA-3684      TCGA-AA-3685      TCGA-AA-3688 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3692      TCGA-AA-3693      TCGA-AA-3695      TCGA-AA-3696 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3812      TCGA-AA-3814 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3819      TCGA-AA-3821      TCGA-AA-3831 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3833      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3850      TCGA-AA-3851 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3852      TCGA-AA-3854      TCGA-AA-3855      TCGA-AA-3856 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3858      TCGA-AA-3860      TCGA-AA-3864      TCGA-AA-3866 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3867      TCGA-AA-3869      TCGA-AA-3870      TCGA-AA-3872 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3875      TCGA-AA-3877      TCGA-AA-3930      TCGA-AA-3939 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3955      TCGA-AA-3956      TCGA-AA-3966      TCGA-AA-3971 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3972      TCGA-AA-3973      TCGA-AA-3975      TCGA-AA-3976 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3977      TCGA-AA-3979      TCGA-AA-3980      TCGA-AA-3982 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-3984      TCGA-AA-3986      TCGA-AA-3989      TCGA-AA-3994 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A022      TCGA-AA-A024 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AF-2689      TCGA-AF-2691 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3574      TCGA-AG-3575 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3578      TCGA-AG-3580      TCGA-AG-3581      TCGA-AG-3582 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3584      TCGA-AG-3587      TCGA-AG-3593 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3594      TCGA-AG-3598      TCGA-AG-3600      TCGA-AG-3601 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3602      TCGA-AG-3605      TCGA-AG-3608      TCGA-AG-3609 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3611      TCGA-AG-3612      TCGA-AG-3726      TCGA-AG-3727 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3878      TCGA-AG-3882      TCGA-AG-3883      TCGA-AG-3887 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3890      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3896      TCGA-AG-3898      TCGA-AG-3901      TCGA-AG-3902 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-3909      TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4005 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-4015      TCGA-AG-A002 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
     TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" "BTNL8 WILD-TYPE" 
                 vv
clus               T1  T2  T3  T4
  BTNL8 MUTATED     0   1   2   0
  BTNL8 WILD-TYPE   9  46 148  17
D126V6, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             2             148
  T4             0              17
                 vv
clus               N0  N1  N2
  BTNL8 MUTATED     3   0   0
  BTNL8 WILD-TYPE 131  44  46
D126V7, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  N0             3             131
  N1             0              44
  N2             0              46
                 vv
clus               M0  M1 M1A
  BTNL8 MUTATED     3   0   0
  BTNL8 WILD-TYPE 186  31   1
D126V8, multiclass
     clus
vv    BTNL8 MUTATED BTNL8 WILD-TYPE
  M0              3             186
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  BTNL8 MUTATED    1  2   0  0
  BTNL8 WILD-TYPE 47 80  60 29
D126V9, multiclass
     clus
vv    BTNL8 MUTATED BTNL8 WILD-TYPE
  I               1              47
  II              2              80
  III             0              60
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  BTNL8 MUTATED     3   0   0   0
  BTNL8 WILD-TYPE 185   2  27   1
D126V10, multiclass
    clus
vv   BTNL8 MUTATED BTNL8 WILD-TYPE
  R0             3             185
  R1             0               2
  R2             0              27
  RX             0               1
D126V11, continuous

Clustering(127) Variable = KLK2 MUTATION ANALYSIS
D127V1, survival
                sevent
clus2              0   1
  KLK2 MUTATED     2   0
  KLK2 WILD-TYPE 104  14
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            118 
  KLK2 MUTATED KLK2 WILD-TYPE 
             0             14 
$`KLK2 MUTATED`
TCGA-AA-3555 TCGA-AA-A00A 
        0.99        18.02 

$`KLK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  KLK2 MUTATED KLK2 WILD-TYPE 
          0.99           0.92 
  KLK2 MUTATED KLK2 WILD-TYPE 
         18.02          72.07 
  KLK2 MUTATED KLK2 WILD-TYPE 
         9.505         10.950 
[1] "1.0 - 18.0 (9.5)"  "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KLK2 MUTATED" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE"   "KLK2 MUTATED" "KLK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
[1] "Remove cluster labels:" "KLK2 MUTATED"          
clus
  KLK2 MUTATED KLK2 WILD-TYPE 
             2            118 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679     TCGA-AA-3685 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811     TCGA-AA-3818 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581     TCGA-AG-3582 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599     TCGA-AG-3726 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887     TCGA-AG-3892 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999     TCGA-AG-4001 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002     TCGA-AG-A008 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"KLK2 WILD-TYPE" "KLK2 WILD-TYPE" 
D127V2, continuous
D127V3, binary
                cls
clus               0   1
  KLK2 MUTATED     3   0
  KLK2 WILD-TYPE 151  68
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      3    0
  KLK2 WILD-TYPE  151   68
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  COLON             3            151
  RECTUM            0             68
D127V4, binary
                cls
clus               0   1
  KLK2 MUTATED     1   2
  KLK2 WILD-TYPE 106 115
[1] "tbl2"
                cls
clus             [,1] [,2]
  KLK2 MUTATED      1    2
  KLK2 WILD-TYPE  106  115
        clus
vv       KLK2 MUTATED KLK2 WILD-TYPE
  FEMALE            1            106
  MALE              2            115
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  KLK2 MUTATED                      2                             1
  KLK2 WILD-TYPE                  126                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  KLK2 MUTATED                       0                              0
  KLK2 WILD-TYPE                    57                              8
D127V5, multiclass
                                clus
vv                               KLK2 MUTATED KLK2 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  KLK2 MUTATED     0   0   3   0
  KLK2 WILD-TYPE   9  47 147  17
D127V6, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            3            147
  T4            0             17
                vv
clus              N0  N1  N2
  KLK2 MUTATED     2   0   1
  KLK2 WILD-TYPE 132  44  45
D127V7, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  N0            2            132
  N1            0             44
  N2            1             45
                vv
clus              M0  M1 M1A
  KLK2 MUTATED     3   0   0
  KLK2 WILD-TYPE 186  31   1
D127V8, multiclass
     clus
vv    KLK2 MUTATED KLK2 WILD-TYPE
  M0             3            186
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  KLK2 MUTATED    0  2   1  0
  KLK2 WILD-TYPE 48 80  59 29
D127V9, multiclass
     clus
vv    KLK2 MUTATED KLK2 WILD-TYPE
  I              0             48
  II             2             80
  III            1             59
  IV             0             29
                vv
clus              R0  R1  R2  RX
  KLK2 MUTATED     3   0   0   0
  KLK2 WILD-TYPE 185   2  27   1
D127V10, multiclass
    clus
vv   KLK2 MUTATED KLK2 WILD-TYPE
  R0            3            185
  R1            0              2
  R2            0             27
  RX            0              1
D127V11, continuous

Clustering(128) Variable = LUZP2 MUTATION ANALYSIS
D128V1, survival
                 sevent
clus2               0   1
  LUZP2 MUTATED     1   1
  LUZP2 WILD-TYPE 105  13
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              2             118 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              1              13 
$`LUZP2 MUTATED`
TCGA-AA-A00N TCGA-AG-A002 
        4.01        20.94 

$`LUZP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  LUZP2 MUTATED LUZP2 WILD-TYPE 
           4.01            0.92 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
          20.94           72.07 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
         12.475          10.950 
[1] "4.0 - 20.9 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
[1] "Remove cluster labels:" "LUZP2 MUTATED"         
clus
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A008 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
D128V2, continuous
D128V3, binary
                 cls
clus                0   1
  LUZP2 MUTATED     4   2
  LUZP2 WILD-TYPE 150  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      4    2
  LUZP2 WILD-TYPE  150   66
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON              4             150
  RECTUM             2              66
D128V4, binary
                 cls
clus                0   1
  LUZP2 MUTATED     1   5
  LUZP2 WILD-TYPE 106 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      1    5
  LUZP2 WILD-TYPE  106  112
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  FEMALE             1             106
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LUZP2 MUTATED                      3                             1
  LUZP2 WILD-TYPE                  125                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LUZP2 MUTATED                       1                              1
  LUZP2 WILD-TYPE                    56                              7
D128V5, multiclass
                                clus
vv                               LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  LUZP2 MUTATED     0   1   4   1
  LUZP2 WILD-TYPE   9  46 146  16
D128V6, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
                 vv
clus               N0  N1  N2
  LUZP2 MUTATED     4   2   0
  LUZP2 WILD-TYPE 130  42  46
D128V7, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  N0             4             130
  N1             2              42
  N2             0              46
                 vv
clus               M0  M1 M1A
  LUZP2 MUTATED     6   0   0
  LUZP2 WILD-TYPE 183  31   1
D128V8, multiclass
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  LUZP2 MUTATED    1  3   2  0
  LUZP2 WILD-TYPE 47 79  58 29
D128V9, multiclass
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  I               1              47
  II              3              79
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  LUZP2 MUTATED     5   0   0   0
  LUZP2 WILD-TYPE 183   2  27   1
D128V10, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  R0             5             183
  R1             0               2
  R2             0              27
  RX             0               1
D128V11, continuous

Clustering(129) Variable = NXF5 MUTATION ANALYSIS
D129V1, survival
                sevent
clus2              0   1
  NXF5 MUTATED     4   0
  NXF5 WILD-TYPE 102  14
  NXF5 MUTATED NXF5 WILD-TYPE 
             4            116 
  NXF5 MUTATED NXF5 WILD-TYPE 
             0             14 
$`NXF5 MUTATED`
TCGA-AA-A010 TCGA-AG-A00Y TCGA-AG-A025 TCGA-AG-A02N 
       20.98        23.01        49.94        61.94 

$`NXF5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       25.94        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       70.03        63.98        10.98         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  NXF5 MUTATED NXF5 WILD-TYPE 
         20.98           0.92 
  NXF5 MUTATED NXF5 WILD-TYPE 
         61.94          72.07 
  NXF5 MUTATED NXF5 WILD-TYPE 
        36.475         10.505 
[1] "21.0 - 61.9 (36.5)" "0.9 - 72.1 (10.5)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"NXF5 WILD-TYPE"   "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
  "NXF5 MUTATED" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" "NXF5 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D129V2, continuous
D129V3, binary
                cls
clus               0   1
  NXF5 MUTATED     4   3
  NXF5 WILD-TYPE 150  65
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      4    3
  NXF5 WILD-TYPE  150   65
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  COLON             4            150
  RECTUM            3             65
D129V4, binary
                cls
clus               0   1
  NXF5 MUTATED     5   2
  NXF5 WILD-TYPE 102 115
[1] "tbl2"
                cls
clus             [,1] [,2]
  NXF5 MUTATED      5    2
  NXF5 WILD-TYPE  102  115
        clus
vv       NXF5 MUTATED NXF5 WILD-TYPE
  FEMALE            5            102
  MALE              2            115
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NXF5 MUTATED                      3                             0
  NXF5 WILD-TYPE                  125                            24
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NXF5 MUTATED                       3                              0
  NXF5 WILD-TYPE                    54                              8
D129V5, multiclass
                                clus
vv                               NXF5 MUTATED NXF5 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  NXF5 MUTATED     1   1   4   1
  NXF5 WILD-TYPE   8  46 146  16
D129V6, multiclass
    clus
vv   NXF5 MUTATED NXF5 WILD-TYPE
  T1            1              8
  T2            1             46
  T3            4            146
  T4            1             16
                vv
clus              N0  N1  N2
  NXF5 MUTATED     7   0   0
  NXF5 WILD-TYPE 127  44  46
D129V7, multiclass
    clus
vv   NXF5 MUTATED NXF5 WILD-TYPE
  N0            7            127
  N1            0             44
  N2            0             46
                vv
clus              M0  M1 M1A
  NXF5 MUTATED     7   0   0
  NXF5 WILD-TYPE 182  31   1
D129V8, multiclass
     clus
vv    NXF5 MUTATED NXF5 WILD-TYPE
  M0             7            182
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  NXF5 MUTATED    2  5   0  0
  NXF5 WILD-TYPE 46 77  60 29
D129V9, multiclass
     clus
vv    NXF5 MUTATED NXF5 WILD-TYPE
  I              2             46
  II             5             77
  III            0             60
  IV             0             29
                vv
clus              R0  R1  R2  RX
  NXF5 MUTATED     7   0   0   0
  NXF5 WILD-TYPE 181   2  27   1
D129V10, multiclass
    clus
vv   NXF5 MUTATED NXF5 WILD-TYPE
  R0            7            181
  R1            0              2
  R2            0             27
  RX            0              1
D129V11, continuous

Clustering(130) Variable = PCDHB5 MUTATION ANALYSIS
D130V1, survival
                  sevent
clus2                0   1
  PCDHB5 MUTATED     5   2
  PCDHB5 WILD-TYPE 101  12
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               7              113 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               2               12 
$`PCDHB5 MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3582 
        0.99         0.99        18.02         4.01        20.98         1.02 
TCGA-AG-A002 
       20.94 

$`PCDHB5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
       10.39         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            0.99             0.92 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
           20.98            72.07 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
[1] "hr=" "3.5"
D130V2, continuous
D130V3, binary
                  cls
clus                 0   1
  PCDHB5 MUTATED    12   2
  PCDHB5 WILD-TYPE 142  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     12    2
  PCDHB5 WILD-TYPE  142   66
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON              12              142
  RECTUM              2               66
D130V4, binary
                  cls
clus                 0   1
  PCDHB5 MUTATED     9   5
  PCDHB5 WILD-TYPE  98 112
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED      9    5
  PCDHB5 WILD-TYPE   98  112
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  FEMALE              9               98
  MALE                5              112
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PCDHB5 MUTATED                     10                             2
  PCDHB5 WILD-TYPE                  118                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PCDHB5 MUTATED                       2                              0
  PCDHB5 WILD-TYPE                    55                              8
D130V5, multiclass
                                clus
vv                               PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  PCDHB5 MUTATED     0   2   9   3
  PCDHB5 WILD-TYPE   9  45 141  14
D130V6, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              9              141
  T4              3               14
                  vv
clus                N0  N1  N2
  PCDHB5 MUTATED    10   3   1
  PCDHB5 WILD-TYPE 124  41  45
D130V7, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  N0             10              124
  N1              3               41
  N2              1               45
                  vv
clus                M0  M1 M1A
  PCDHB5 MUTATED    12   2   0
  PCDHB5 WILD-TYPE 177  29   1
D130V8, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  M0              12              177
  M1               2               29
  M1A              0                1
                  vv
clus                I II III IV
  PCDHB5 MUTATED    1  9   2  2
  PCDHB5 WILD-TYPE 47 73  58 27
D130V9, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  I                1               47
  II               9               73
  III              2               58
  IV               2               27
                  vv
clus                R0  R1  R2  RX
  PCDHB5 MUTATED    13   0   1   0
  PCDHB5 WILD-TYPE 175   2  26   1
D130V10, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  R0             13              175
  R1              0                2
  R2              1               26
  RX              0                1
D130V11, continuous

Clustering(131) Variable = LOXL2 MUTATION ANALYSIS
D131V1, survival
                 sevent
clus2               0   1
  LOXL2 MUTATED     6   0
  LOXL2 WILD-TYPE 100  14
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              6             114 
  LOXL2 MUTATED LOXL2 WILD-TYPE 
              0              14 
$`LOXL2 MUTATED`
TCGA-AA-3811 TCGA-AA-3977 TCGA-AA-3986 TCGA-AG-3893 TCGA-AG-A002 TCGA-AG-A02N 
        0.99         1.02         0.99         0.99        20.94        61.94 

$`LOXL2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  LOXL2 MUTATED LOXL2 WILD-TYPE 
           0.99            0.92 
  LOXL2 MUTATED LOXL2 WILD-TYPE 
          61.94           72.07 
  LOXL2 MUTATED LOXL2 WILD-TYPE 
          1.005          11.490 
[1] "1.0 - 61.9 (1.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" "LOXL2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" "LOXL2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE"   "LOXL2 MUTATED" "LOXL2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "LOXL2 MUTATED" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" "LOXL2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D131V2, continuous
D131V3, binary
                 cls
clus                0   1
  LOXL2 MUTATED     6   3
  LOXL2 WILD-TYPE 148  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LOXL2 MUTATED      6    3
  LOXL2 WILD-TYPE  148   65
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D131V4, binary
                 cls
clus                0   1
  LOXL2 MUTATED     2   7
  LOXL2 WILD-TYPE 105 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LOXL2 MUTATED      2    7
  LOXL2 WILD-TYPE  105  110
        clus
vv       LOXL2 MUTATED LOXL2 WILD-TYPE
  FEMALE             2             105
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LOXL2 MUTATED                      5                             1
  LOXL2 WILD-TYPE                  123                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LOXL2 MUTATED                       3                              0
  LOXL2 WILD-TYPE                    54                              8
D131V5, multiclass
                                clus
vv                               LOXL2 MUTATED LOXL2 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  LOXL2 MUTATED     0   3   6   0
  LOXL2 WILD-TYPE   9  44 144  17
D131V6, multiclass
    clus
vv   LOXL2 MUTATED LOXL2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             0              17
                 vv
clus               N0  N1  N2
  LOXL2 MUTATED     6   1   2
  LOXL2 WILD-TYPE 128  43  44
D131V7, multiclass
    clus
vv   LOXL2 MUTATED LOXL2 WILD-TYPE
  N0             6             128
  N1             1              43
  N2             2              44
                 vv
clus               M0  M1 M1A
  LOXL2 MUTATED     8   0   0
  LOXL2 WILD-TYPE 181  31   1
D131V8, multiclass
     clus
vv    LOXL2 MUTATED LOXL2 WILD-TYPE
  M0              8             181
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  LOXL2 MUTATED    2  3   3  0
  LOXL2 WILD-TYPE 46 79  57 29
D131V9, multiclass
     clus
vv    LOXL2 MUTATED LOXL2 WILD-TYPE
  I               2              46
  II              3              79
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  LOXL2 MUTATED     7   0   0   0
  LOXL2 WILD-TYPE 181   2  27   1
D131V10, multiclass
    clus
vv   LOXL2 MUTATED LOXL2 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             0              27
  RX             0               1
D131V11, continuous

Clustering(132) Variable = UBQLNL MUTATION ANALYSIS
D132V1, survival
                  sevent
clus2                0   1
  UBQLNL MUTATED     2   0
  UBQLNL WILD-TYPE 104  14
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               2              118 
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               0               14 
$`UBQLNL MUTATED`
TCGA-AA-3977 TCGA-AG-3581 
        1.02         1.02 

$`UBQLNL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3582 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  UBQLNL MUTATED UBQLNL WILD-TYPE 
            1.02             0.92 
  UBQLNL MUTATED UBQLNL WILD-TYPE 
            1.02            72.07 
  UBQLNL MUTATED UBQLNL WILD-TYPE 
            1.02            11.49 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE"   "UBQLNL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
  "UBQLNL MUTATED" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE"   "UBQLNL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
  "UBQLNL MUTATED" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE"   "UBQLNL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
  "UBQLNL MUTATED" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
[1] "Remove cluster labels:" "UBQLNL MUTATED"        
clus
  UBQLNL MUTATED UBQLNL WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3582 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599       TCGA-AG-3726 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887       TCGA-AG-3892 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999       TCGA-AG-4001 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002       TCGA-AG-A008 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y       TCGA-AG-A011 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"UBQLNL WILD-TYPE" "UBQLNL WILD-TYPE" 
D132V2, continuous
D132V3, binary
                  cls
clus                 0   1
  UBQLNL MUTATED     3   2
  UBQLNL WILD-TYPE 151  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBQLNL MUTATED      3    2
  UBQLNL WILD-TYPE  151   66
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  COLON               3              151
  RECTUM              2               66
D132V4, binary
                  cls
clus                 0   1
  UBQLNL MUTATED     1   4
  UBQLNL WILD-TYPE 106 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBQLNL MUTATED      1    4
  UBQLNL WILD-TYPE  106  113
        clus
vv       UBQLNL MUTATED UBQLNL WILD-TYPE
  FEMALE              1              106
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  UBQLNL MUTATED                      2                             1
  UBQLNL WILD-TYPE                  126                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  UBQLNL MUTATED                       2                              0
  UBQLNL WILD-TYPE                    55                              8
D132V5, multiclass
                                clus
vv                               UBQLNL MUTATED UBQLNL WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  UBQLNL MUTATED     0   2   3   0
  UBQLNL WILD-TYPE   9  45 147  17
D132V6, multiclass
    clus
vv   UBQLNL MUTATED UBQLNL WILD-TYPE
  T1              0                9
  T2              2               45
  T3              3              147
  T4              0               17
                  vv
clus                N0  N1  N2
  UBQLNL MUTATED     3   0   2
  UBQLNL WILD-TYPE 131  44  44
D132V7, multiclass
    clus
vv   UBQLNL MUTATED UBQLNL WILD-TYPE
  N0              3              131
  N1              0               44
  N2              2               44
                  vv
clus                M0  M1 M1A
  UBQLNL MUTATED     4   0   0
  UBQLNL WILD-TYPE 185  31   1
D132V8, multiclass
     clus
vv    UBQLNL MUTATED UBQLNL WILD-TYPE
  M0               4              185
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  UBQLNL MUTATED    1  1   2  0
  UBQLNL WILD-TYPE 47 81  58 29
D132V9, multiclass
     clus
vv    UBQLNL MUTATED UBQLNL WILD-TYPE
  I                1               47
  II               1               81
  III              2               58
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  UBQLNL MUTATED     3   0   0   0
  UBQLNL WILD-TYPE 185   2  27   1
D132V10, multiclass
    clus
vv   UBQLNL MUTATED UBQLNL WILD-TYPE
  R0              3              185
  R1              0                2
  R2              0               27
  RX              0                1
D132V11, continuous

Clustering(133) Variable = MYO1B MUTATION ANALYSIS
D133V1, survival
                 sevent
clus2              0  1
  MYO1B MUTATED    7  0
  MYO1B WILD-TYPE 99 14
  MYO1B MUTATED MYO1B WILD-TYPE 
              7             113 
  MYO1B MUTATED MYO1B WILD-TYPE 
              0              14 
$`MYO1B MUTATED`
TCGA-AA-3685 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00A TCGA-AG-3892 TCGA-AG-A002 
        0.99         0.99         1.02        18.02         1.02        20.94 
TCGA-AG-A02N 
       61.94 

$`MYO1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         1.02         0.99         0.99        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        40.96        38.01        72.07 

  MYO1B MUTATED MYO1B WILD-TYPE 
           0.99            0.92 
  MYO1B MUTATED MYO1B WILD-TYPE 
          61.94           72.07 
  MYO1B MUTATED MYO1B WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 61.9 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MYO1B WILD-TYPE"   "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "MYO1B MUTATED" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" "MYO1B WILD-TYPE" 
[1] "hr="     "7.3e+07"
D133V2, continuous
D133V3, binary
                 cls
clus                0   1
  MYO1B MUTATED     9   4
  MYO1B WILD-TYPE 145  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED      9    4
  MYO1B WILD-TYPE  145   64
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D133V4, binary
                 cls
clus                0   1
  MYO1B MUTATED     7   6
  MYO1B WILD-TYPE 100 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO1B MUTATED      7    6
  MYO1B WILD-TYPE  100  111
        clus
vv       MYO1B MUTATED MYO1B WILD-TYPE
  FEMALE             7             100
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  MYO1B MUTATED                      6                             3
  MYO1B WILD-TYPE                  122                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  MYO1B MUTATED                       4                              0
  MYO1B WILD-TYPE                    53                              8
D133V5, multiclass
                                clus
vv                               MYO1B MUTATED MYO1B WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  MYO1B MUTATED     1   3   8   1
  MYO1B WILD-TYPE   8  44 142  16
D133V6, multiclass
    clus
vv   MYO1B MUTATED MYO1B WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             1              16
                 vv
clus               N0  N1  N2
  MYO1B MUTATED    10   1   2
  MYO1B WILD-TYPE 124  43  44
D133V7, multiclass
    clus
vv   MYO1B MUTATED MYO1B WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
                 vv
clus               M0  M1 M1A
  MYO1B MUTATED    12   0   0
  MYO1B WILD-TYPE 177  31   1
D133V8, multiclass
     clus
vv    MYO1B MUTATED MYO1B WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  MYO1B MUTATED    3  6   3  0
  MYO1B WILD-TYPE 45 76  57 29
D133V9, multiclass
     clus
vv    MYO1B MUTATED MYO1B WILD-TYPE
  I               3              45
  II              6              76
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  MYO1B MUTATED    11   0   0   0
  MYO1B WILD-TYPE 177   2  27   1
D133V10, multiclass
    clus
vv   MYO1B MUTATED MYO1B WILD-TYPE
  R0            11             177
  R1             0               2
  R2             0              27
  RX             0               1
D133V11, continuous

Clustering(134) Variable = SPATA17 MUTATION ANALYSIS
D134V1, survival
                   sevent
clus2                 0   1
  SPATA17 MUTATED     4   1
  SPATA17 WILD-TYPE 102  13
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                5               115 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                1                13 
$`SPATA17 MUTATED`
TCGA-A6-2676 TCGA-AA-3947 TCGA-AA-A00J TCGA-AA-A00N TCGA-AG-A002 
       14.70         0.99        18.02         4.01        20.94 

$`SPATA17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SPATA17 MUTATED SPATA17 WILD-TYPE 
             0.99              0.92 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
            20.94             72.07 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
            14.70             10.92 
[1] "1.0 - 20.9 (14.7)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
[1] "hr=" "1.9"
D134V2, continuous
D134V3, binary
                   cls
clus                  0   1
  SPATA17 MUTATED     7   2
  SPATA17 WILD-TYPE 147  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      7    2
  SPATA17 WILD-TYPE  147   66
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  COLON                7               147
  RECTUM               2                66
D134V4, binary
                   cls
clus                  0   1
  SPATA17 MUTATED     5   4
  SPATA17 WILD-TYPE 102 113
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      5    4
  SPATA17 WILD-TYPE  102  113
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SPATA17 MUTATED                      3                             4
  SPATA17 WILD-TYPE                  125                            20
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SPATA17 MUTATED                       2                              0
  SPATA17 WILD-TYPE                    55                              8
D134V5, multiclass
                                clus
vv                               SPATA17 MUTATED SPATA17 WILD-TYPE
  COLON ADENOCARCINOMA                         3               125
  COLON MUCINOUS ADENOCARCINOMA                4                20
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  SPATA17 MUTATED     0   3   2   3
  SPATA17 WILD-TYPE   9  44 148  14
D134V6, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               2               148
  T4               3                14
                   vv
clus                 N0  N1  N2
  SPATA17 MUTATED     8   1   0
  SPATA17 WILD-TYPE 126  43  46
D134V7, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  N0               8               126
  N1               1                43
  N2               0                46
                   vv
clus                 M0  M1 M1A
  SPATA17 MUTATED     9   0   0
  SPATA17 WILD-TYPE 180  31   1
D134V8, multiclass
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  SPATA17 MUTATED    3  5   1  0
  SPATA17 WILD-TYPE 45 77  59 29
D134V9, multiclass
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  I                 3                45
  II                5                77
  III               1                59
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  SPATA17 MUTATED     9   0   0   0
  SPATA17 WILD-TYPE 179   2  27   1
D134V10, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  R0               9               179
  R1               0                 2
  R2               0                27
  RX               0                 1
D134V11, continuous

Clustering(135) Variable = RIMS1 MUTATION ANALYSIS
D135V1, survival
                 sevent
clus2              0  1
  RIMS1 MUTATED    8  1
  RIMS1 WILD-TYPE 98 13
  RIMS1 MUTATED RIMS1 WILD-TYPE 
              9             111 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
              1              13 
$`RIMS1 MUTATED`
TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01R 
        0.99         1.02         1.02        20.98        38.07        35.01 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A02N 
        1.02        20.94        61.94 

$`RIMS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       13.02         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  RIMS1 MUTATED RIMS1 WILD-TYPE 
           0.99            0.92 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
          61.94           72.07 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
          20.94           10.92 
[1] "1.0 - 61.9 (20.9)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
[1] "hr=" "1.3"
D135V2, continuous
D135V3, binary
                 cls
clus                0   1
  RIMS1 MUTATED    12   3
  RIMS1 WILD-TYPE 142  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED     12    3
  RIMS1 WILD-TYPE  142   65
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  COLON             12             142
  RECTUM             3              65
D135V4, binary
                 cls
clus                0   1
  RIMS1 MUTATED     6   9
  RIMS1 WILD-TYPE 101 108
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED      6    9
  RIMS1 WILD-TYPE  101  108
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  FEMALE             6             101
  MALE               9             108
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  RIMS1 MUTATED                      9                             3
  RIMS1 WILD-TYPE                  119                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  RIMS1 MUTATED                       3                              0
  RIMS1 WILD-TYPE                    54                              8
D135V5, multiclass
                                clus
vv                               RIMS1 MUTATED RIMS1 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  RIMS1 MUTATED     0   4   9   2
  RIMS1 WILD-TYPE   9  43 141  15
D135V6, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             9             141
  T4             2              15
                 vv
clus               N0  N1  N2
  RIMS1 MUTATED    13   1   1
  RIMS1 WILD-TYPE 121  43  45
D135V7, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  N0            13             121
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  RIMS1 MUTATED    14   0   0
  RIMS1 WILD-TYPE 175  31   1
D135V8, multiclass
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  M0             14             175
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  RIMS1 MUTATED    3  9   2  0
  RIMS1 WILD-TYPE 45 73  58 29
D135V9, multiclass
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  I               3              45
  II              9              73
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  RIMS1 MUTATED    13   0   0   0
  RIMS1 WILD-TYPE 175   2  27   1
D135V10, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  R0            13             175
  R1             0               2
  R2             0              27
  RX             0               1
D135V11, continuous

Clustering(136) Variable = COL12A1 MUTATION ANALYSIS
D136V1, survival
                   sevent
clus2                0  1
  COL12A1 MUTATED   12  2
  COL12A1 WILD-TYPE 94 12
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               14               106 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
                2                12 
$`COL12A1 MUTATED`
TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01I TCGA-AA-A02O TCGA-AA-A03F TCGA-AG-3726 TCGA-AG-3892 TCGA-AG-3999 
       12.00         0.92        18.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A00H 
       20.94        25.94 

$`COL12A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         5.03        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        1.02         0.99         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  COL12A1 MUTATED COL12A1 WILD-TYPE 
             0.92              0.92 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
            25.94             72.07 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
             1.02             12.00 
[1] "0.9 - 25.9 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"COL12A1 WILD-TYPE"   "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "COL12A1 MUTATED" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE"   "COL12A1 MUTATED" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" "COL12A1 WILD-TYPE" 
[1] "hr=" "2.1"
D136V2, continuous
D136V3, binary
                   cls
clus                  0   1
  COL12A1 MUTATED    15   6
  COL12A1 WILD-TYPE 139  62
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     15    6
  COL12A1 WILD-TYPE  139   62
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  COLON               15               139
  RECTUM               6                62
D136V4, binary
                   cls
clus                  0   1
  COL12A1 MUTATED    10  11
  COL12A1 WILD-TYPE  97 106
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL12A1 MUTATED     10   11
  COL12A1 WILD-TYPE   97  106
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  FEMALE              10                97
  MALE                11               106
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  COL12A1 MUTATED                      9                             5
  COL12A1 WILD-TYPE                  119                            19
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  COL12A1 MUTATED                       6                              0
  COL12A1 WILD-TYPE                    51                              8
D136V5, multiclass
                                clus
vv                               COL12A1 MUTATED COL12A1 WILD-TYPE
  COLON ADENOCARCINOMA                         9               119
  COLON MUCINOUS ADENOCARCINOMA                5                19
  RECTAL ADENOCARCINOMA                        6                51
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  COL12A1 MUTATED     1   6  11   3
  COL12A1 WILD-TYPE   8  41 139  14
D136V6, multiclass
    clus
vv   COL12A1 MUTATED COL12A1 WILD-TYPE
  T1               1                 8
  T2               6                41
  T3              11               139
  T4               3                14
                   vv
clus                 N0  N1  N2
  COL12A1 MUTATED    17   1   3
  COL12A1 WILD-TYPE 117  43  43
D136V7, multiclass
    clus
vv   COL12A1 MUTATED COL12A1 WILD-TYPE
  N0              17               117
  N1               1                43
  N2               3                43
                   vv
clus                 M0  M1 M1A
  COL12A1 MUTATED    20   0   0
  COL12A1 WILD-TYPE 169  31   1
D136V8, multiclass
     clus
vv    COL12A1 MUTATED COL12A1 WILD-TYPE
  M0               20               169
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  COL12A1 MUTATED    6 10   4  0
  COL12A1 WILD-TYPE 42 72  56 29
D136V9, multiclass
     clus
vv    COL12A1 MUTATED COL12A1 WILD-TYPE
  I                 6                42
  II               10                72
  III               4                56
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  COL12A1 MUTATED    20   0   0   0
  COL12A1 WILD-TYPE 168   2  27   1
D136V10, multiclass
    clus
vv   COL12A1 MUTATED COL12A1 WILD-TYPE
  R0              20               168
  R1               0                 2
  R2               0                27
  RX               0                 1
D136V11, continuous

Clustering(137) Variable = JAKMIP2 MUTATION ANALYSIS
D137V1, survival
                   sevent
clus2                0  1
  JAKMIP2 MUTATED    9  0
  JAKMIP2 WILD-TYPE 97 14
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
                9               111 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
                0                14 
$`JAKMIP2 MUTATED`
TCGA-A6-2672 TCGA-A6-3808 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A02Y 
       16.54         9.14         0.99         1.02        20.98        39.95 
TCGA-AG-3726 TCGA-AG-A002 TCGA-AG-A014 
        1.02        20.94        15.91 

$`JAKMIP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         0.99         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
             0.99              0.92 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
            39.95             72.07 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
            15.91             10.92 
[1] "1.0 - 40.0 (15.9)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D137V2, continuous
D137V3, binary
                   cls
clus                  0   1
  JAKMIP2 MUTATED    10   3
  JAKMIP2 WILD-TYPE 144  65
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED     10    3
  JAKMIP2 WILD-TYPE  144   65
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  COLON               10               144
  RECTUM               3                65
D137V4, binary
                   cls
clus                  0   1
  JAKMIP2 MUTATED     8   5
  JAKMIP2 WILD-TYPE  99 112
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED      8    5
  JAKMIP2 WILD-TYPE   99  112
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  FEMALE               8                99
  MALE                 5               112
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  JAKMIP2 MUTATED                      7                             3
  JAKMIP2 WILD-TYPE                  121                            21
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  JAKMIP2 MUTATED                       3                              0
  JAKMIP2 WILD-TYPE                    54                              8
D137V5, multiclass
                                clus
vv                               JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  COLON ADENOCARCINOMA                         7               121
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  JAKMIP2 MUTATED     0   5   6   2
  JAKMIP2 WILD-TYPE   9  42 144  15
D137V6, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  T1               0                 9
  T2               5                42
  T3               6               144
  T4               2                15
                   vv
clus                 N0  N1  N2
  JAKMIP2 MUTATED    11   1   1
  JAKMIP2 WILD-TYPE 123  43  45
D137V7, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  N0              11               123
  N1               1                43
  N2               1                45
                   vv
clus                 M0  M1 M1A
  JAKMIP2 MUTATED    13   0   0
  JAKMIP2 WILD-TYPE 176  31   1
D137V8, multiclass
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  M0               13               176
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  JAKMIP2 MUTATED    4  7   2  0
  JAKMIP2 WILD-TYPE 44 75  58 29
D137V9, multiclass
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  I                 4                44
  II                7                75
  III               2                58
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  JAKMIP2 MUTATED    12   0   0   0
  JAKMIP2 WILD-TYPE 176   2  27   1
D137V10, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  R0              12               176
  R1               0                 2
  R2               0                27
  RX               0                 1
D137V11, continuous

Clustering(138) Variable = CDH10 MUTATION ANALYSIS
D138V1, survival
                 sevent
clus2              0  1
  CDH10 MUTATED    7  1
  CDH10 WILD-TYPE 99 13
  CDH10 MUTATED CDH10 WILD-TYPE 
              8             112 
  CDH10 MUTATED CDH10 WILD-TYPE 
              1              13 
$`CDH10 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         1.02         1.02         4.01        20.98        12.00 
TCGA-AA-A01Z TCGA-AG-A002 
       20.98        20.94 

$`CDH10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  CDH10 MUTATED CDH10 WILD-TYPE 
           0.99            0.92 
  CDH10 MUTATED CDH10 WILD-TYPE 
          20.98           72.07 
  CDH10 MUTATED CDH10 WILD-TYPE 
          8.005          10.950 
[1] "1.0 - 21.0 (8.0)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
[1] "hr=" "1.3"
D138V2, continuous
D138V3, binary
                 cls
clus                0   1
  CDH10 MUTATED    12   2
  CDH10 WILD-TYPE 142  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED     12    2
  CDH10 WILD-TYPE  142   66
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  COLON             12             142
  RECTUM             2              66
D138V4, binary
                 cls
clus                0   1
  CDH10 MUTATED     5   9
  CDH10 WILD-TYPE 102 108
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      5    9
  CDH10 WILD-TYPE  102  108
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE             5             102
  MALE               9             108
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CDH10 MUTATED                      9                             3
  CDH10 WILD-TYPE                  119                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CDH10 MUTATED                       2                              0
  CDH10 WILD-TYPE                    55                              8
D138V5, multiclass
                                clus
vv                               CDH10 MUTATED CDH10 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CDH10 MUTATED     0   4   8   2
  CDH10 WILD-TYPE   9  43 142  15
D138V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             2              15
                 vv
clus               N0  N1  N2
  CDH10 MUTATED    11   2   1
  CDH10 WILD-TYPE 123  42  45
D138V7, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  N0            11             123
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  CDH10 MUTATED    12   1   0
  CDH10 WILD-TYPE 177  30   1
D138V8, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  M0             12             177
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  CDH10 MUTATED    3  7   2  1
  CDH10 WILD-TYPE 45 75  58 28
D138V9, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  I               3              45
  II              7              75
  III             2              58
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  CDH10 MUTATED    12   0   1   0
  CDH10 WILD-TYPE 176   2  26   1
D138V10, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             1              26
  RX             0               1
D138V11, continuous

Clustering(139) Variable = EPHA5 MUTATION ANALYSIS
D139V1, survival
                 sevent
clus2               0   1
  EPHA5 MUTATED     6   1
  EPHA5 WILD-TYPE 100  13
  EPHA5 MUTATED EPHA5 WILD-TYPE 
              7             113 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
              1              13 
$`EPHA5 MUTATED`
TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00Z TCGA-AA-A010 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02        21.99        20.98        20.94        13.91 
TCGA-AG-A02X 
       40.96 

$`EPHA5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        38.01        72.07 

  EPHA5 MUTATED EPHA5 WILD-TYPE 
           1.02            0.92 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
          40.96           72.07 
  EPHA5 MUTATED EPHA5 WILD-TYPE 
          20.94           10.62 
[1] "1.0 - 41.0 (20.9)" "0.9 - 72.1 (10.6)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE"   "EPHA5 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "EPHA5 MUTATED"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"EPHA5 WILD-TYPE"   "EPHA5 MUTATED" "EPHA5 WILD-TYPE" "EPHA5 WILD-TYPE" 
[1] "hr=" "1.1"
D139V2, continuous
D139V3, binary
                 cls
clus                0   1
  EPHA5 MUTATED     9   4
  EPHA5 WILD-TYPE 145  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      9    4
  EPHA5 WILD-TYPE  145   64
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D139V4, binary
                 cls
clus                0   1
  EPHA5 MUTATED     6   7
  EPHA5 WILD-TYPE 101 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA5 MUTATED      6    7
  EPHA5 WILD-TYPE  101  110
        clus
vv       EPHA5 MUTATED EPHA5 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  EPHA5 MUTATED                      7                             1
  EPHA5 WILD-TYPE                  121                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  EPHA5 MUTATED                       3                              1
  EPHA5 WILD-TYPE                    54                              7
D139V5, multiclass
                                clus
vv                               EPHA5 MUTATED EPHA5 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  EPHA5 MUTATED     0   4   8   1
  EPHA5 WILD-TYPE   9  43 142  16
D139V6, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  T1             0               9
  T2             4              43
  T3             8             142
  T4             1              16
                 vv
clus               N0  N1  N2
  EPHA5 MUTATED     9   2   2
  EPHA5 WILD-TYPE 125  42  44
D139V7, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  EPHA5 MUTATED    12   0   0
  EPHA5 WILD-TYPE 177  31   1
D139V8, multiclass
     clus
vv    EPHA5 MUTATED EPHA5 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  EPHA5 MUTATED    3  5   4  0
  EPHA5 WILD-TYPE 45 77  56 29
D139V9, multiclass
     clus
vv    EPHA5 MUTATED EPHA5 WILD-TYPE
  I               3              45
  II              5              77
  III             4              56
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  EPHA5 MUTATED    11   0   0   0
  EPHA5 WILD-TYPE 177   2  27   1
D139V10, multiclass
    clus
vv   EPHA5 MUTATED EPHA5 WILD-TYPE
  R0            11             177
  R1             0               2
  R2             0              27
  RX             0               1
D139V11, continuous

Clustering(140) Variable = ODZ1 MUTATION ANALYSIS
D140V1, survival
                sevent
clus2             0  1
  ODZ1 MUTATED    9  4
  ODZ1 WILD-TYPE 97 10
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            13            107 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
             4             10 
$`ODZ1 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3947 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-A00Q TCGA-AA-A01P TCGA-AA-A03F TCGA-AY-4071 TCGA-AF-2689 TCGA-AG-A002 
       27.02        38.07        18.02         0.95        15.85        20.94 
TCGA-AG-A020 
       10.98 

$`ODZ1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3842 
        1.02         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00R 
       18.02        18.02        17.00         4.01        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       39.95        40.93        16.31        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        70.03        63.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ODZ1 MUTATED ODZ1 WILD-TYPE 
          0.95           0.92 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
         38.07          72.07 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
          1.02          12.00 
[1] "0.9 - 38.1 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
[1] "hr=" "5"  
D140V2, continuous
D140V3, binary
                cls
clus               0   1
  ODZ1 MUTATED    16   5
  ODZ1 WILD-TYPE 138  63
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     16    5
  ODZ1 WILD-TYPE  138   63
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON            16            138
  RECTUM            5             63
D140V4, binary
                cls
clus               0   1
  ODZ1 MUTATED    19   3
  ODZ1 WILD-TYPE  88 114
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     19    3
  ODZ1 WILD-TYPE   88  114
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  FEMALE           19             88
  MALE              3            114
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ODZ1 MUTATED                      9                             6
  ODZ1 WILD-TYPE                  119                            18
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ODZ1 MUTATED                       3                              1
  ODZ1 WILD-TYPE                    54                              7
D140V5, multiclass
                                clus
vv                               ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             6             18
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  ODZ1 MUTATED     1   4  15   2
  ODZ1 WILD-TYPE   8  43 135  15
D140V6, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  T1            1              8
  T2            4             43
  T3           15            135
  T4            2             15
                vv
clus              N0  N1  N2
  ODZ1 MUTATED    13   4   5
  ODZ1 WILD-TYPE 121  40  41
D140V7, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  N0           13            121
  N1            4             40
  N2            5             41
                vv
clus              M0  M1 M1A
  ODZ1 MUTATED    19   2   0
  ODZ1 WILD-TYPE 170  29   1
D140V8, multiclass
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  M0            19            170
  M1             2             29
  M1A            0              1
                vv
clus              I II III IV
  ODZ1 MUTATED    5  8   7  1
  ODZ1 WILD-TYPE 43 74  53 28
D140V9, multiclass
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  I              5             43
  II             8             74
  III            7             53
  IV             1             28
                vv
clus              R0  R1  R2  RX
  ODZ1 MUTATED    18   0   1   0
  ODZ1 WILD-TYPE 170   2  26   1
D140V10, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  R0           18            170
  R1            0              2
  R2            1             26
  RX            0              1
D140V11, continuous

Clustering(141) Variable = POSTN MUTATION ANALYSIS
D141V1, survival
                 sevent
clus2               0   1
  POSTN MUTATED     4   2
  POSTN WILD-TYPE 102  12
  POSTN MUTATED POSTN WILD-TYPE 
              6             114 
  POSTN MUTATED POSTN WILD-TYPE 
              2              12 
$`POSTN MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01G TCGA-AA-A01R 
        1.02         1.02         1.02         4.01        12.00        35.01 

$`POSTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  POSTN MUTATED POSTN WILD-TYPE 
           1.02            0.92 
  POSTN MUTATED POSTN WILD-TYPE 
          35.01           72.07 
  POSTN MUTATED POSTN WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
[1] "hr=" "5"  
D141V2, continuous
D141V3, binary
                 cls
clus                0   1
  POSTN MUTATED    11   0
  POSTN WILD-TYPE 143  68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED     11    0
  POSTN WILD-TYPE  143   68
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  COLON             11             143
  RECTUM             0              68
D141V4, binary
                 cls
clus                0   1
  POSTN MUTATED     5   6
  POSTN WILD-TYPE 102 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED      5    6
  POSTN WILD-TYPE  102  111
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  FEMALE             5             102
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  POSTN MUTATED                      7                             4
  POSTN WILD-TYPE                  121                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  POSTN MUTATED                       0                              0
  POSTN WILD-TYPE                    57                              8
D141V5, multiclass
                                clus
vv                               POSTN MUTATED POSTN WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  POSTN MUTATED     0   2   8   1
  POSTN WILD-TYPE   9  45 142  16
D141V6, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  T1             0               9
  T2             2              45
  T3             8             142
  T4             1              16
                 vv
clus               N0  N1  N2
  POSTN MUTATED     9   0   2
  POSTN WILD-TYPE 125  44  44
D141V7, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  N0             9             125
  N1             0              44
  N2             2              44
                 vv
clus               M0  M1 M1A
  POSTN MUTATED    10   0   0
  POSTN WILD-TYPE 179  31   1
D141V8, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  POSTN MUTATED    1  7   2  0
  POSTN WILD-TYPE 47 75  58 29
D141V9, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  I               1              47
  II              7              75
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  POSTN MUTATED     9   0   0   0
  POSTN WILD-TYPE 179   2  27   1
D141V10, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  R0             9             179
  R1             0               2
  R2             0              27
  RX             0               1
D141V11, continuous

Clustering(142) Variable = SYNE1 MUTATION ANALYSIS
D142V1, survival
                 sevent
clus2              0  1
  SYNE1 MUTATED   26  2
  SYNE1 WILD-TYPE 80 12
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             28              92 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
              2              12 
$`SYNE1 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3518 
       16.54        14.70        17.79        15.52         9.14         1.02 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3854 
        0.99         1.02         1.02         1.02         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 
        0.99         1.02        30.02         4.01        17.00        20.98 
TCGA-AA-A01Q TCGA-AA-A02W TCGA-AF-2691 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        1.02        40.96        10.62         1.02         0.99        20.94 
TCGA-AG-A015 TCGA-AG-A025 TCGA-AG-A02N TCGA-AG-A036 
       13.02        49.94        61.94        72.07 

$`SYNE1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3526 
       13.91        17.19        14.37        10.92         8.09         0.99 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02         0.99        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A016 
        6.02        25.94        23.01        17.03        15.91         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        70.03        63.98        10.98         1.94        38.93 
TCGA-AG-A02X TCGA-AG-A032 
       40.96        38.01 

  SYNE1 MUTATED SYNE1 WILD-TYPE 
           0.99            0.92 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
          72.07           70.03 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
           9.88           11.49 
[1] "1.0 - 72.1 (9.9)"  "0.9 - 70.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
[1] "hr=" "2"  
D142V2, continuous
D142V3, binary
                 cls
clus                0   1
  SYNE1 MUTATED    37  10
  SYNE1 WILD-TYPE 117  58
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     37   10
  SYNE1 WILD-TYPE  117   58
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON             37             117
  RECTUM            10              58
D142V4, binary
                 cls
clus               0  1
  SYNE1 MUTATED   24 23
  SYNE1 WILD-TYPE 83 94
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     24   23
  SYNE1 WILD-TYPE   83   94
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  FEMALE            24              83
  MALE              23              94
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SYNE1 MUTATED                     26                            10
  SYNE1 WILD-TYPE                  102                            14
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SYNE1 MUTATED                       9                              1
  SYNE1 WILD-TYPE                    48                              7
D142V5, multiclass
                                clus
vv                               SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON ADENOCARCINOMA                      26             102
  COLON MUCINOUS ADENOCARCINOMA             10              14
  RECTAL ADENOCARCINOMA                      9              48
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  SYNE1 MUTATED     5   6  30   5
  SYNE1 WILD-TYPE   4  41 120  12
D142V6, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  T1             5               4
  T2             6              41
  T3            30             120
  T4             5              12
                 vv
clus               N0  N1  N2
  SYNE1 MUTATED    32  10   5
  SYNE1 WILD-TYPE 102  34  41
D142V7, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  N0            32             102
  N1            10              34
  N2             5              41
                 vv
clus               M0  M1 M1A
  SYNE1 MUTATED    42   3   0
  SYNE1 WILD-TYPE 147  28   1
D142V8, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  M0             42             147
  M1              3              28
  M1A             0               1
                 vv
clus               I II III IV
  SYNE1 MUTATED    9 20  13  3
  SYNE1 WILD-TYPE 39 62  47 26
D142V9, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  I               9              39
  II             20              62
  III            13              47
  IV              3              26
                 vv
clus               R0  R1  R2  RX
  SYNE1 MUTATED    40   0   4   0
  SYNE1 WILD-TYPE 148   2  23   1
D142V10, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  R0            40             148
  R1             0               2
  R2             4              23
  RX             0               1
D142V11, continuous

Clustering(143) Variable = ZCWPW2 MUTATION ANALYSIS
D143V1, survival
                  sevent
clus2                0   1
  ZCWPW2 MUTATED     6   0
  ZCWPW2 WILD-TYPE 100  14
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               6              114 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
               0               14 
$`ZCWPW2 MUTATED`
TCGA-A6-2683 TCGA-AA-3966 TCGA-AA-A010 TCGA-AG-3587 TCGA-AG-4001 TCGA-AG-A002 
       15.52         1.02        20.98         1.02         1.02        20.94 

$`ZCWPW2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
            1.02             0.92 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
           20.98            72.07 
  ZCWPW2 MUTATED ZCWPW2 WILD-TYPE 
            8.27            10.95 
[1] "1.0 - 21.0 (8.3)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZCWPW2 WILD-TYPE"   "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZCWPW2 MUTATED" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" "ZCWPW2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D143V2, continuous
D143V3, binary
                  cls
clus                 0   1
  ZCWPW2 MUTATED     4   3
  ZCWPW2 WILD-TYPE 150  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      4    3
  ZCWPW2 WILD-TYPE  150   65
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON               4              150
  RECTUM              3               65
D143V4, binary
                  cls
clus                 0   1
  ZCWPW2 MUTATED     4   3
  ZCWPW2 WILD-TYPE 103 114
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZCWPW2 MUTATED      4    3
  ZCWPW2 WILD-TYPE  103  114
        clus
vv       ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  FEMALE              4              103
  MALE                3              114
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZCWPW2 MUTATED                      3                             1
  ZCWPW2 WILD-TYPE                  125                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZCWPW2 MUTATED                       3                              0
  ZCWPW2 WILD-TYPE                    54                              8
D143V5, multiclass
                                clus
vv                               ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ZCWPW2 MUTATED     0   3   2   2
  ZCWPW2 WILD-TYPE   9  44 148  15
D143V6, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              2              148
  T4              2               15
                  vv
clus                N0  N1  N2
  ZCWPW2 MUTATED     7   0   0
  ZCWPW2 WILD-TYPE 127  44  46
D143V7, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  N0              7              127
  N1              0               44
  N2              0               46
                  vv
clus                M0  M1 M1A
  ZCWPW2 MUTATED     5   1   0
  ZCWPW2 WILD-TYPE 184  30   1
D143V8, multiclass
     clus
vv    ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  M0               5              184
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  ZCWPW2 MUTATED    2  3   0  1
  ZCWPW2 WILD-TYPE 46 79  60 28
D143V9, multiclass
     clus
vv    ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  I                2               46
  II               3               79
  III              0               60
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  ZCWPW2 MUTATED     5   0   1   0
  ZCWPW2 WILD-TYPE 183   2  26   1
D143V10, multiclass
    clus
vv   ZCWPW2 MUTATED ZCWPW2 WILD-TYPE
  R0              5              183
  R1              0                2
  R2              1               26
  RX              0                1
D143V11, continuous

Clustering(144) Variable = ZEB2 MUTATION ANALYSIS
D144V1, survival
                sevent
clus2             0  1
  ZEB2 MUTATED    7  2
  ZEB2 WILD-TYPE 99 12
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             9            111 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             2             12 
$`ZEB2 MUTATED`
TCGA-A6-3810 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A010 
        8.09         1.02         0.99        34.03         4.01        20.98 
TCGA-AA-A01P TCGA-AG-A002 TCGA-AG-A014 
       38.07        20.94        15.91 

$`ZEB2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ZEB2 MUTATED ZEB2 WILD-TYPE 
          0.99           0.92 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
         38.07          72.07 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
         15.91          10.92 
[1] "1.0 - 38.1 (15.9)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
[1] "hr=" "2"  
D144V2, continuous
D144V3, binary
                cls
clus               0   1
  ZEB2 MUTATED    11   4
  ZEB2 WILD-TYPE 143  64
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED     11    4
  ZEB2 WILD-TYPE  143   64
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  COLON            11            143
  RECTUM            4             64
D144V4, binary
                cls
clus               0   1
  ZEB2 MUTATED     6   9
  ZEB2 WILD-TYPE 101 108
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED      6    9
  ZEB2 WILD-TYPE  101  108
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  FEMALE            6            101
  MALE              9            108
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZEB2 MUTATED                      9                             2
  ZEB2 WILD-TYPE                  119                            22
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZEB2 MUTATED                       4                              0
  ZEB2 WILD-TYPE                    53                              8
D144V5, multiclass
                                clus
vv                               ZEB2 MUTATED ZEB2 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  ZEB2 MUTATED     1   4   8   2
  ZEB2 WILD-TYPE   8  43 142  15
D144V6, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            8            142
  T4            2             15
                vv
clus              N0  N1  N2
  ZEB2 MUTATED    11   1   3
  ZEB2 WILD-TYPE 123  43  43
D144V7, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  N0           11            123
  N1            1             43
  N2            3             43
                vv
clus              M0  M1 M1A
  ZEB2 MUTATED    14   1   0
  ZEB2 WILD-TYPE 175  30   1
D144V8, multiclass
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  M0            14            175
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  ZEB2 MUTATED    5  6   3  1
  ZEB2 WILD-TYPE 43 76  57 28
D144V9, multiclass
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  I              5             43
  II             6             76
  III            3             57
  IV             1             28
                vv
clus              R0  R1  R2  RX
  ZEB2 MUTATED    14   0   1   0
  ZEB2 WILD-TYPE 174   2  26   1
D144V10, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  R0           14            174
  R1            0              2
  R2            1             26
  RX            0              1
D144V11, continuous

Clustering(145) Variable = TUSC3 MUTATION ANALYSIS
D145V1, survival
                 sevent
clus2               0   1
  TUSC3 MUTATED     6   0
  TUSC3 WILD-TYPE 100  14
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              6             114 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
              0              14 
$`TUSC3 MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-A00D TCGA-AA-A010 TCGA-AA-A02O TCGA-AG-A002 
       14.70         1.02        19.00        20.98         0.92        20.94 

$`TUSC3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  TUSC3 MUTATED TUSC3 WILD-TYPE 
           0.92            0.92 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          20.98           72.07 
  TUSC3 MUTATED TUSC3 WILD-TYPE 
          16.85           10.77 
[1] "0.9 - 21.0 (16.9)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" "TUSC3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE"   "TUSC3 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TUSC3 MUTATED" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" "TUSC3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D145V2, continuous
D145V3, binary
                 cls
clus                0   1
  TUSC3 MUTATED     5   2
  TUSC3 WILD-TYPE 149  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      5    2
  TUSC3 WILD-TYPE  149   66
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D145V4, binary
                 cls
clus                0   1
  TUSC3 MUTATED     3   4
  TUSC3 WILD-TYPE 104 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TUSC3 MUTATED      3    4
  TUSC3 WILD-TYPE  104  113
        clus
vv       TUSC3 MUTATED TUSC3 WILD-TYPE
  FEMALE             3             104
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TUSC3 MUTATED                      4                             1
  TUSC3 WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TUSC3 MUTATED                       2                              0
  TUSC3 WILD-TYPE                    55                              8
D145V5, multiclass
                                clus
vv                               TUSC3 MUTATED TUSC3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  TUSC3 MUTATED     0   2   3   1
  TUSC3 WILD-TYPE   9  45 147  16
D145V6, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             3             147
  T4             1              16
                 vv
clus               N0  N1  N2
  TUSC3 MUTATED     6   0   1
  TUSC3 WILD-TYPE 128  44  45
D145V7, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  N0             6             128
  N1             0              44
  N2             1              45
                 vv
clus               M0  M1 M1A
  TUSC3 MUTATED     7   0   0
  TUSC3 WILD-TYPE 182  31   1
D145V8, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  TUSC3 MUTATED    2  4   1  0
  TUSC3 WILD-TYPE 46 78  59 29
D145V9, multiclass
     clus
vv    TUSC3 MUTATED TUSC3 WILD-TYPE
  I               2              46
  II              4              78
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  TUSC3 MUTATED     7   0   0   0
  TUSC3 WILD-TYPE 181   2  27   1
D145V10, multiclass
    clus
vv   TUSC3 MUTATED TUSC3 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             0              27
  RX             0               1
D145V11, continuous

Clustering(146) Variable = CACNG7 MUTATION ANALYSIS
D146V1, survival
                  sevent
clus2                0   1
  CACNG7 MUTATED     4   0
  CACNG7 WILD-TYPE 102  14
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               4              116 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
               0               14 
$`CACNG7 MUTATED`
TCGA-AA-3949 TCGA-AG-4008 TCGA-AG-A01W TCGA-AG-A01Y 
        0.99         1.02        70.03        63.98 

$`CACNG7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CACNG7 MUTATED CACNG7 WILD-TYPE 
            0.99             0.92 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
           70.03            72.07 
  CACNG7 MUTATED CACNG7 WILD-TYPE 
           32.50            10.95 
[1] "1.0 - 70.0 (32.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE"   "CACNG7 MUTATED"   "CACNG7 MUTATED" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" "CACNG7 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D146V2, continuous
D146V3, binary
                  cls
clus                 0   1
  CACNG7 MUTATED     3   3
  CACNG7 WILD-TYPE 151  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      3    3
  CACNG7 WILD-TYPE  151   65
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  COLON               3              151
  RECTUM              3               65
D146V4, binary
                  cls
clus                 0   1
  CACNG7 MUTATED     4   2
  CACNG7 WILD-TYPE 103 115
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG7 MUTATED      4    2
  CACNG7 WILD-TYPE  103  115
        clus
vv       CACNG7 MUTATED CACNG7 WILD-TYPE
  FEMALE              4              103
  MALE                2              115
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CACNG7 MUTATED                      2                             1
  CACNG7 WILD-TYPE                  126                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CACNG7 MUTATED                       3                              0
  CACNG7 WILD-TYPE                    54                              8
D146V5, multiclass
                                clus
vv                               CACNG7 MUTATED CACNG7 WILD-TYPE
  COLON ADENOCARCINOMA                        2              126
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  CACNG7 MUTATED     0   1   5   0
  CACNG7 WILD-TYPE   9  46 145  17
D146V6, multiclass
    clus
vv   CACNG7 MUTATED CACNG7 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              0               17
                  vv
clus                N0  N1  N2
  CACNG7 MUTATED     5   1   0
  CACNG7 WILD-TYPE 129  43  46
D146V7, multiclass
    clus
vv   CACNG7 MUTATED CACNG7 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              0               46
                  vv
clus                M0  M1 M1A
  CACNG7 MUTATED     6   0   0
  CACNG7 WILD-TYPE 183  31   1
D146V8, multiclass
     clus
vv    CACNG7 MUTATED CACNG7 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  CACNG7 MUTATED    1  4   1  0
  CACNG7 WILD-TYPE 47 78  59 29
D146V9, multiclass
     clus
vv    CACNG7 MUTATED CACNG7 WILD-TYPE
  I                1               47
  II               4               78
  III              1               59
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  CACNG7 MUTATED     6   0   0   0
  CACNG7 WILD-TYPE 182   2  27   1
D146V10, multiclass
    clus
vv   CACNG7 MUTATED CACNG7 WILD-TYPE
  R0              6              182
  R1              0                2
  R2              0               27
  RX              0                1
D146V11, continuous

Clustering(147) Variable = RWDD2B MUTATION ANALYSIS
D147V1, survival
                  sevent
clus2                0   1
  RWDD2B MUTATED     6   1
  RWDD2B WILD-TYPE 100  13
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               7              113 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
               1               13 
$`RWDD2B MUTATED`
TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-3892 
        0.99         1.02        18.02        20.98         1.02         1.02 
TCGA-AG-A02G 
       38.93 

$`RWDD2B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        0.99         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        61.94        40.96        38.01        72.07 

  RWDD2B MUTATED RWDD2B WILD-TYPE 
            0.99             0.92 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
           38.93            72.07 
  RWDD2B MUTATED RWDD2B WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 38.9 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"RWDD2B WILD-TYPE"   "RWDD2B MUTATED" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE"   "RWDD2B MUTATED" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" "RWDD2B WILD-TYPE" 
[1] "hr=" "1.3"
D147V2, continuous
D147V3, binary
                  cls
clus                 0   1
  RWDD2B MUTATED     5   3
  RWDD2B WILD-TYPE 149  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      5    3
  RWDD2B WILD-TYPE  149   65
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D147V4, binary
                  cls
clus                 0   1
  RWDD2B MUTATED     4   4
  RWDD2B WILD-TYPE 103 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RWDD2B MUTATED      4    4
  RWDD2B WILD-TYPE  103  113
        clus
vv       RWDD2B MUTATED RWDD2B WILD-TYPE
  FEMALE              4              103
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  RWDD2B MUTATED                      5                             0
  RWDD2B WILD-TYPE                  123                            24
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  RWDD2B MUTATED                       3                              0
  RWDD2B WILD-TYPE                    54                              8
D147V5, multiclass
                                clus
vv                               RWDD2B MUTATED RWDD2B WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  RWDD2B MUTATED     1   3   3   1
  RWDD2B WILD-TYPE   8  44 147  16
D147V6, multiclass
    clus
vv   RWDD2B MUTATED RWDD2B WILD-TYPE
  T1              1                8
  T2              3               44
  T3              3              147
  T4              1               16
                  vv
clus                N0  N1  N2
  RWDD2B MUTATED     7   1   0
  RWDD2B WILD-TYPE 127  43  46
D147V7, multiclass
    clus
vv   RWDD2B MUTATED RWDD2B WILD-TYPE
  N0              7              127
  N1              1               43
  N2              0               46
                  vv
clus                M0  M1 M1A
  RWDD2B MUTATED     6   1   0
  RWDD2B WILD-TYPE 183  30   1
D147V8, multiclass
     clus
vv    RWDD2B MUTATED RWDD2B WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  RWDD2B MUTATED    2  4   0  1
  RWDD2B WILD-TYPE 46 78  60 28
D147V9, multiclass
     clus
vv    RWDD2B MUTATED RWDD2B WILD-TYPE
  I                2               46
  II               4               78
  III              0               60
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  RWDD2B MUTATED     6   0   1   0
  RWDD2B WILD-TYPE 182   2  26   1
D147V10, multiclass
    clus
vv   RWDD2B MUTATED RWDD2B WILD-TYPE
  R0              6              182
  R1              0                2
  R2              1               26
  RX              0                1
D147V11, continuous

Clustering(148) Variable = SLC25A13 MUTATION ANALYSIS
D148V1, survival
                    sevent
clus2                  0   1
  SLC25A13 MUTATED     4   1
  SLC25A13 WILD-TYPE 102  13
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 5                115 
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
                 1                 13 
$`SLC25A13 MUTATED`
TCGA-A6-3810 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 TCGA-AG-A011 
        8.09         4.01        20.98        20.94        17.03 

$`SLC25A13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        1.02        13.91         6.02        25.94        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
              4.01               0.92 
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
             20.98              72.07 
  SLC25A13 MUTATED SLC25A13 WILD-TYPE 
             17.03              10.92 
[1] "4.0 - 21.0 (17.0)" "0.9 - 72.1 (10.9)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"SLC25A13 WILD-TYPE"   "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
  "SLC25A13 MUTATED" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" "SLC25A13 WILD-TYPE" 
[1] "hr=" "1.6"
D148V2, continuous
D148V3, binary
                    cls
clus                   0   1
  SLC25A13 MUTATED     5   2
  SLC25A13 WILD-TYPE 149  66
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC25A13 MUTATED      5    2
  SLC25A13 WILD-TYPE  149   66
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  COLON                 5                149
  RECTUM                2                 66
D148V4, binary
                    cls
clus                   0   1
  SLC25A13 MUTATED     1   6
  SLC25A13 WILD-TYPE 106 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  SLC25A13 MUTATED      1    6
  SLC25A13 WILD-TYPE  106  111
        clus
vv       SLC25A13 MUTATED SLC25A13 WILD-TYPE
  FEMALE                1                106
  MALE                  6                111
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SLC25A13 MUTATED                      4                             1
  SLC25A13 WILD-TYPE                  124                            23
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SLC25A13 MUTATED                       2                              0
  SLC25A13 WILD-TYPE                    55                              8
D148V5, multiclass
                                clus
vv                               SLC25A13 MUTATED SLC25A13 WILD-TYPE
  COLON ADENOCARCINOMA                          4                124
  COLON MUCINOUS ADENOCARCINOMA                 1                 23
  RECTAL ADENOCARCINOMA                         2                 55
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  SLC25A13 MUTATED     0   3   2   2
  SLC25A13 WILD-TYPE   9  44 148  15
D148V6, multiclass
    clus
vv   SLC25A13 MUTATED SLC25A13 WILD-TYPE
  T1                0                  9
  T2                3                 44
  T3                2                148
  T4                2                 15
                    vv
clus                  N0  N1  N2
  SLC25A13 MUTATED     6   0   1
  SLC25A13 WILD-TYPE 128  44  45
D148V7, multiclass
    clus
vv   SLC25A13 MUTATED SLC25A13 WILD-TYPE
  N0                6                128
  N1                0                 44
  N2                1                 45
                    vv
clus                  M0  M1 M1A
  SLC25A13 MUTATED     7   0   0
  SLC25A13 WILD-TYPE 182  31   1
D148V8, multiclass
     clus
vv    SLC25A13 MUTATED SLC25A13 WILD-TYPE
  M0                 7                182
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  SLC25A13 MUTATED    2  4   1  0
  SLC25A13 WILD-TYPE 46 78  59 29
D148V9, multiclass
     clus
vv    SLC25A13 MUTATED SLC25A13 WILD-TYPE
  I                  2                 46
  II                 4                 78
  III                1                 59
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  SLC25A13 MUTATED     7   0   0   0
  SLC25A13 WILD-TYPE 181   2  27   1
D148V10, multiclass
    clus
vv   SLC25A13 MUTATED SLC25A13 WILD-TYPE
  R0                7                181
  R1                0                  2
  R2                0                 27
  RX                0                  1
D148V11, continuous

Clustering(149) Variable = DPF2 MUTATION ANALYSIS
D149V1, survival
                sevent
clus2              0   1
  DPF2 MUTATED     1   0
  DPF2 WILD-TYPE 105  14
  DPF2 MUTATED DPF2 WILD-TYPE 
             1            119 
  DPF2 MUTATED DPF2 WILD-TYPE 
             0             14 
$`DPF2 MUTATED`
TCGA-AG-A01Y 
       63.98 

$`DPF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
        1.02        12.00        70.03        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  DPF2 MUTATED DPF2 WILD-TYPE 
         63.98           0.92 
  DPF2 MUTATED DPF2 WILD-TYPE 
         63.98          72.07 
  DPF2 MUTATED DPF2 WILD-TYPE 
         63.98          10.92 
[1] "64.0 - 64.0 (64.0)" "0.9 - 72.1 (10.9)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE"   "DPF2 MUTATED" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
[1] "Remove cluster labels:" "DPF2 MUTATED"          
clus
  DPF2 MUTATED DPF2 WILD-TYPE 
             1            119 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A020 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
    TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DPF2 WILD-TYPE" "DPF2 WILD-TYPE" "DPF2 WILD-TYPE" 
D149V2, continuous
D149V3, binary
                cls
clus               0   1
  DPF2 MUTATED     2   2
  DPF2 WILD-TYPE 152  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      2    2
  DPF2 WILD-TYPE  152   66
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  COLON             2            152
  RECTUM            2             66
D149V4, binary
                cls
clus               0   1
  DPF2 MUTATED     3   1
  DPF2 WILD-TYPE 104 116
[1] "tbl2"
                cls
clus             [,1] [,2]
  DPF2 MUTATED      3    1
  DPF2 WILD-TYPE  104  116
        clus
vv       DPF2 MUTATED DPF2 WILD-TYPE
  FEMALE            3            104
  MALE              1            116
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DPF2 MUTATED                      1                             1
  DPF2 WILD-TYPE                  127                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DPF2 MUTATED                       2                              0
  DPF2 WILD-TYPE                    55                              8
D149V5, multiclass
                                clus
vv                               DPF2 MUTATED DPF2 WILD-TYPE
  COLON ADENOCARCINOMA                      1            127
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  DPF2 MUTATED     0   0   4   0
  DPF2 WILD-TYPE   9  47 146  17
D149V6, multiclass
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  T1            0              9
  T2            0             47
  T3            4            146
  T4            0             17
                vv
clus              N0  N1  N2
  DPF2 MUTATED     3   0   1
  DPF2 WILD-TYPE 131  44  45
D149V7, multiclass
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  N0            3            131
  N1            0             44
  N2            1             45
                vv
clus              M0  M1 M1A
  DPF2 MUTATED     4   0   0
  DPF2 WILD-TYPE 185  31   1
D149V8, multiclass
     clus
vv    DPF2 MUTATED DPF2 WILD-TYPE
  M0             4            185
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  DPF2 MUTATED    0  3   1  0
  DPF2 WILD-TYPE 48 79  59 29
D149V9, multiclass
     clus
vv    DPF2 MUTATED DPF2 WILD-TYPE
  I              0             48
  II             3             79
  III            1             59
  IV             0             29
                vv
clus              R0  R1  R2  RX
  DPF2 MUTATED     3   0   0   0
  DPF2 WILD-TYPE 185   2  27   1
D149V10, multiclass
    clus
vv   DPF2 MUTATED DPF2 WILD-TYPE
  R0            3            185
  R1            0              2
  R2            0             27
  RX            0              1
D149V11, continuous

Clustering(150) Variable = PCDH10 MUTATION ANALYSIS
D150V1, survival
                  sevent
clus2               0  1
  PCDH10 MUTATED   14  0
  PCDH10 WILD-TYPE 92 14
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              106 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
               0               14 
$`PCDH10 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-3949 
       16.54        14.70         1.02         0.99         0.99         0.99 
TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01K TCGA-AA-A01V TCGA-AG-3892 
       18.02        20.98        15.02        13.02        35.01         1.02 
TCGA-AG-A002 TCGA-AG-A01L 
       20.94        12.00 

$`PCDH10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  PCDH10 MUTATED PCDH10 WILD-TYPE 
            0.99             0.92 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
           35.01            72.07 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
          13.860           10.505 
[1] "1.0 - 35.0 (13.9)" "0.9 - 72.1 (10.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
[1] "hr="     "8.1e+07"
D150V2, continuous
D150V3, binary
                  cls
clus                 0   1
  PCDH10 MUTATED    14   3
  PCDH10 WILD-TYPE 140  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     14    3
  PCDH10 WILD-TYPE  140   65
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON              14              140
  RECTUM              3               65
D150V4, binary
                  cls
clus                 0   1
  PCDH10 MUTATED    11   6
  PCDH10 WILD-TYPE  96 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     11    6
  PCDH10 WILD-TYPE   96  111
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  FEMALE             11               96
  MALE                6              111
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PCDH10 MUTATED                     10                             4
  PCDH10 WILD-TYPE                  118                            20
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PCDH10 MUTATED                       3                              0
  PCDH10 WILD-TYPE                    54                              8
D150V5, multiclass
                                clus
vv                               PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  PCDH10 MUTATED     1   2  11   2
  PCDH10 WILD-TYPE   8  45 139  15
D150V6, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  T1              1                8
  T2              2               45
  T3             11              139
  T4              2               15
                  vv
clus                N0  N1  N2
  PCDH10 MUTATED     9   5   3
  PCDH10 WILD-TYPE 125  39  43
D150V7, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  N0              9              125
  N1              5               39
  N2              3               43
                  vv
clus                M0  M1 M1A
  PCDH10 MUTATED    16   1   0
  PCDH10 WILD-TYPE 173  30   1
D150V8, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  M0              16              173
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  PCDH10 MUTATED    3  6   7  1
  PCDH10 WILD-TYPE 45 76  53 28
D150V9, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  I                3               45
  II               6               76
  III              7               53
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  PCDH10 MUTATED    15   0   1   0
  PCDH10 WILD-TYPE 173   2  26   1
D150V10, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  R0             15              173
  R1              0                2
  R2              1               26
  RX              0                1
D150V11, continuous

Clustering(151) Variable = CDH12 MUTATION ANALYSIS
D151V1, survival
                 sevent
clus2              0  1
  CDH12 MUTATED    9  0
  CDH12 WILD-TYPE 97 14
  CDH12 MUTATED CDH12 WILD-TYPE 
              9             111 
  CDH12 MUTATED CDH12 WILD-TYPE 
              0              14 
$`CDH12 MUTATED`
TCGA-AA-3555 TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A00R TCGA-AA-A010 
        0.99         1.02         1.02        19.00         0.99        20.98 
TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        1.02         0.99        20.94 

$`CDH12 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 
        0.95         0.99         0.92         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  CDH12 MUTATED CDH12 WILD-TYPE 
           0.99            0.92 
  CDH12 MUTATED CDH12 WILD-TYPE 
          20.98           72.07 
  CDH12 MUTATED CDH12 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"CDH12 WILD-TYPE"   "CDH12 MUTATED" "CDH12 WILD-TYPE"   "CDH12 MUTATED" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "CDH12 MUTATED" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" "CDH12 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D151V2, continuous
D151V3, binary
                 cls
clus                0   1
  CDH12 MUTATED     8   5
  CDH12 WILD-TYPE 146  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      8    5
  CDH12 WILD-TYPE  146   63
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  COLON              8             146
  RECTUM             5              63
D151V4, binary
                 cls
clus                0   1
  CDH12 MUTATED     7   6
  CDH12 WILD-TYPE 100 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH12 MUTATED      7    6
  CDH12 WILD-TYPE  100  111
        clus
vv       CDH12 MUTATED CDH12 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CDH12 MUTATED                      7                             1
  CDH12 WILD-TYPE                  121                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CDH12 MUTATED                       5                              0
  CDH12 WILD-TYPE                    52                              8
D151V5, multiclass
                                clus
vv                               CDH12 MUTATED CDH12 WILD-TYPE
  COLON ADENOCARCINOMA                       7             121
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  CDH12 MUTATED     1   5   6   1
  CDH12 WILD-TYPE   8  42 144  16
D151V6, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  T1             1               8
  T2             5              42
  T3             6             144
  T4             1              16
                 vv
clus               N0  N1  N2
  CDH12 MUTATED    12   1   0
  CDH12 WILD-TYPE 122  43  46
D151V7, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  N0            12             122
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  CDH12 MUTATED    12   0   0
  CDH12 WILD-TYPE 177  31   1
D151V8, multiclass
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  CDH12 MUTATED    4  7   1  0
  CDH12 WILD-TYPE 44 75  59 29
D151V9, multiclass
     clus
vv    CDH12 MUTATED CDH12 WILD-TYPE
  I               4              44
  II              7              75
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  CDH12 MUTATED    12   0   0   0
  CDH12 WILD-TYPE 176   2  27   1
D151V10, multiclass
    clus
vv   CDH12 MUTATED CDH12 WILD-TYPE
  R0            12             176
  R1             0               2
  R2             0              27
  RX             0               1
D151V11, continuous

Clustering(152) Variable = MCF2 MUTATION ANALYSIS
D152V1, survival
                sevent
clus2              0   1
  MCF2 MUTATED     5   1
  MCF2 WILD-TYPE 101  13
  MCF2 MUTATED MCF2 WILD-TYPE 
             6            114 
  MCF2 MUTATED MCF2 WILD-TYPE 
             1             13 
$`MCF2 MUTATED`
TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 
        0.99         1.02        18.02         4.01        20.98         1.02 

$`MCF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  MCF2 MUTATED MCF2 WILD-TYPE 
          0.99           0.92 
  MCF2 MUTATED MCF2 WILD-TYPE 
         20.98          72.07 
  MCF2 MUTATED MCF2 WILD-TYPE 
         2.515         11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"MCF2 WILD-TYPE"   "MCF2 MUTATED" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" "MCF2 WILD-TYPE" 
[1] "hr=" "2.1"
D152V2, continuous
D152V3, binary
                cls
clus               0   1
  MCF2 MUTATED     8   4
  MCF2 WILD-TYPE 146  64
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      8    4
  MCF2 WILD-TYPE  146   64
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  COLON             8            146
  RECTUM            4             64
D152V4, binary
                cls
clus               0   1
  MCF2 MUTATED     7   5
  MCF2 WILD-TYPE 100 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  MCF2 MUTATED      7    5
  MCF2 WILD-TYPE  100  112
        clus
vv       MCF2 MUTATED MCF2 WILD-TYPE
  FEMALE            7            100
  MALE              5            112
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  MCF2 MUTATED                      5                             3
  MCF2 WILD-TYPE                  123                            21
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  MCF2 MUTATED                       4                              0
  MCF2 WILD-TYPE                    53                              8
D152V5, multiclass
                                clus
vv                               MCF2 MUTATED MCF2 WILD-TYPE
  COLON ADENOCARCINOMA                      5            123
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  MCF2 MUTATED     1   4   4   3
  MCF2 WILD-TYPE   8  43 146  14
D152V6, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  T1            1              8
  T2            4             43
  T3            4            146
  T4            3             14
                vv
clus              N0  N1  N2
  MCF2 MUTATED     8   3   1
  MCF2 WILD-TYPE 126  41  45
D152V7, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  N0            8            126
  N1            3             41
  N2            1             45
                vv
clus              M0  M1 M1A
  MCF2 MUTATED    10   1   0
  MCF2 WILD-TYPE 179  30   1
D152V8, multiclass
     clus
vv    MCF2 MUTATED MCF2 WILD-TYPE
  M0            10            179
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  MCF2 MUTATED    4  3   3  1
  MCF2 WILD-TYPE 44 79  57 28
D152V9, multiclass
     clus
vv    MCF2 MUTATED MCF2 WILD-TYPE
  I              4             44
  II             3             79
  III            3             57
  IV             1             28
                vv
clus              R0  R1  R2  RX
  MCF2 MUTATED    10   0   1   0
  MCF2 WILD-TYPE 178   2  26   1
D152V10, multiclass
    clus
vv   MCF2 MUTATED MCF2 WILD-TYPE
  R0           10            178
  R1            0              2
  R2            1             26
  RX            0              1
D152V11, continuous

Clustering(153) Variable = NCKAP5 MUTATION ANALYSIS
D153V1, survival
                  sevent
clus2               0  1
  NCKAP5 MUTATED    9  1
  NCKAP5 WILD-TYPE 97 13
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              10              110 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
               1               13 
$`NCKAP5 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02F TCGA-AG-A002 
       35.01        35.01        39.95        20.94 

$`NCKAP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
            0.99             0.92 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
           39.95            72.07 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
          12.475           10.950 
[1] "1.0 - 40.0 (12.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
[1] "hr=" "1.3"
D153V2, continuous
D153V3, binary
                  cls
clus                 0   1
  NCKAP5 MUTATED    13   2
  NCKAP5 WILD-TYPE 141  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     13    2
  NCKAP5 WILD-TYPE  141   66
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON              13              141
  RECTUM              2               66
D153V4, binary
                  cls
clus                 0   1
  NCKAP5 MUTATED     7   8
  NCKAP5 WILD-TYPE 100 109
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED      7    8
  NCKAP5 WILD-TYPE  100  109
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  FEMALE              7              100
  MALE                8              109
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NCKAP5 MUTATED                     10                             3
  NCKAP5 WILD-TYPE                  118                            21
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NCKAP5 MUTATED                       2                              0
  NCKAP5 WILD-TYPE                    55                              8
D153V5, multiclass
                                clus
vv                               NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON ADENOCARCINOMA                       10              118
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  NCKAP5 MUTATED     0   4   8   3
  NCKAP5 WILD-TYPE   9  43 142  14
D153V6, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              8              142
  T4              3               14
                  vv
clus                N0  N1  N2
  NCKAP5 MUTATED     8   4   3
  NCKAP5 WILD-TYPE 126  40  43
D153V7, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  N0              8              126
  N1              4               40
  N2              3               43
                  vv
clus                M0  M1 M1A
  NCKAP5 MUTATED    11   3   0
  NCKAP5 WILD-TYPE 178  28   1
D153V8, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  M0              11              178
  M1               3               28
  M1A              0                1
                  vv
clus                I II III IV
  NCKAP5 MUTATED    2  5   4  3
  NCKAP5 WILD-TYPE 46 77  56 26
D153V9, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  I                2               46
  II               5               77
  III              4               56
  IV               3               26
                  vv
clus                R0  R1  R2  RX
  NCKAP5 MUTATED    11   0   2   0
  NCKAP5 WILD-TYPE 177   2  25   1
D153V10, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  R0             11              177
  R1              0                2
  R2              2               25
  RX              0                1
D153V11, continuous

Clustering(154) Variable = RIMS2 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2               0   1
  RIMS2 MUTATED     4   2
  RIMS2 WILD-TYPE 102  12
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              6             114 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              2              12 
$`RIMS2 MUTATED`
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A024 TCGA-AG-A002 
        0.99         1.02         4.01        20.98        39.06        20.94 

$`RIMS2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.99            0.92 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          39.06           72.07 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
         12.475          10.950 
[1] "1.0 - 39.1 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
[1] "hr=" "2.5"
D154V2, continuous
D154V3, binary
                 cls
clus                0   1
  RIMS2 MUTATED    12   1
  RIMS2 WILD-TYPE 142  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED     12    1
  RIMS2 WILD-TYPE  142   67
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON             12             142
  RECTUM             1              67
D154V4, binary
                 cls
clus                0   1
  RIMS2 MUTATED     7   6
  RIMS2 WILD-TYPE 100 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      7    6
  RIMS2 WILD-TYPE  100  111
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE             7             100
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  RIMS2 MUTATED                      8                             4
  RIMS2 WILD-TYPE                  120                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  RIMS2 MUTATED                       1                              0
  RIMS2 WILD-TYPE                    56                              8
D154V5, multiclass
                                clus
vv                               RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  RIMS2 MUTATED     0   3   7   3
  RIMS2 WILD-TYPE   9  44 143  14
D154V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             7             143
  T4             3              14
                 vv
clus               N0  N1  N2
  RIMS2 MUTATED     9   2   2
  RIMS2 WILD-TYPE 125  42  44
D154V7, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  RIMS2 MUTATED    10   2   0
  RIMS2 WILD-TYPE 179  29   1
D154V8, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  M0             10             179
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  RIMS2 MUTATED    2  6   2  2
  RIMS2 WILD-TYPE 46 76  58 27
D154V9, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  I               2              46
  II              6              76
  III             2              58
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  RIMS2 MUTATED    10   0   2   0
  RIMS2 WILD-TYPE 178   2  25   1
D154V10, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             2              25
  RX             0               1
D154V11, continuous

Clustering(155) Variable = ATP7A MUTATION ANALYSIS
D155V1, survival
                 sevent
clus2               0   1
  ATP7A MUTATED     1   1
  ATP7A WILD-TYPE 105  13
  ATP7A MUTATED ATP7A WILD-TYPE 
              2             118 
  ATP7A MUTATED ATP7A WILD-TYPE 
              1              13 
$`ATP7A MUTATED`
TCGA-A6-2683 TCGA-AA-A03F 
       15.52        18.02 

$`ATP7A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       40.96        39.95        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  ATP7A MUTATED ATP7A WILD-TYPE 
          15.52            0.92 
  ATP7A MUTATED ATP7A WILD-TYPE 
          18.02           72.07 
  ATP7A MUTATED ATP7A WILD-TYPE 
          16.77           10.77 
[1] "15.5 - 18.0 (16.8)" "0.9 - 72.1 (10.8)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
[1] "Remove cluster labels:" "ATP7A MUTATED"         
clus
  ATP7A MUTATED ATP7A WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-3807      TCGA-A6-3808 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03J      TCGA-AY-4070 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AY-4071      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
D155V2, continuous
D155V3, binary
                 cls
clus                0   1
  ATP7A MUTATED     5   1
  ATP7A WILD-TYPE 149  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      5    1
  ATP7A WILD-TYPE  149   67
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D155V4, binary
                 cls
clus                0   1
  ATP7A MUTATED     4   2
  ATP7A WILD-TYPE 103 115
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      4    2
  ATP7A WILD-TYPE  103  115
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  FEMALE             4             103
  MALE               2             115
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ATP7A MUTATED                      4                             1
  ATP7A WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ATP7A MUTATED                       0                              0
  ATP7A WILD-TYPE                    57                              8
D155V5, multiclass
                                clus
vv                               ATP7A MUTATED ATP7A WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ATP7A MUTATED     0   0   3   3
  ATP7A WILD-TYPE   9  47 147  14
D155V6, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  T1             0               9
  T2             0              47
  T3             3             147
  T4             3              14
                 vv
clus               N0  N1  N2
  ATP7A MUTATED     2   2   2
  ATP7A WILD-TYPE 132  42  44
D155V7, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  N0             2             132
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  ATP7A MUTATED     4   2   0
  ATP7A WILD-TYPE 185  29   1
D155V8, multiclass
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  M0              4             185
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  ATP7A MUTATED    0  1   3  2
  ATP7A WILD-TYPE 48 81  57 27
D155V9, multiclass
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  I               0              48
  II              1              81
  III             3              57
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  ATP7A MUTATED     5   0   1   0
  ATP7A WILD-TYPE 183   2  26   1
D155V10, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  R0             5             183
  R1             0               2
  R2             1              26
  RX             0               1
D155V11, continuous

Clustering(156) Variable = TPTE MUTATION ANALYSIS
D156V1, survival
                sevent
clus2             0  1
  TPTE MUTATED    7  1
  TPTE WILD-TYPE 99 13
  TPTE MUTATED TPTE WILD-TYPE 
             8            112 
  TPTE MUTATED TPTE WILD-TYPE 
             1             13 
$`TPTE MUTATED`
TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.92         0.99         1.02         4.01        20.98 
TCGA-AA-A01R TCGA-AG-A002 
       35.01        20.94 

$`TPTE WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  TPTE MUTATED TPTE WILD-TYPE 
          0.92           0.92 
  TPTE MUTATED TPTE WILD-TYPE 
         35.01          72.07 
  TPTE MUTATED TPTE WILD-TYPE 
         2.515         11.490 
[1] "0.9 - 35.0 (2.5)"  "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1.6"
D156V2, continuous
D156V3, binary
                cls
clus               0   1
  TPTE MUTATED    11   1
  TPTE WILD-TYPE 143  67
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED     11    1
  TPTE WILD-TYPE  143   67
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  COLON            11            143
  RECTUM            1             67
D156V4, binary
                cls
clus               0   1
  TPTE MUTATED     7   5
  TPTE WILD-TYPE 100 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    5
  TPTE WILD-TYPE  100  112
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            7            100
  MALE              5            112
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TPTE MUTATED                      7                             4
  TPTE WILD-TYPE                  121                            20
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TPTE MUTATED                       1                              0
  TPTE WILD-TYPE                    56                              8
D156V5, multiclass
                                clus
vv                               TPTE MUTATED TPTE WILD-TYPE
  COLON ADENOCARCINOMA                      7            121
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  TPTE MUTATED     0   3   7   2
  TPTE WILD-TYPE   9  44 143  15
D156V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              9
  T2            3             44
  T3            7            143
  T4            2             15
                vv
clus              N0  N1  N2
  TPTE MUTATED     7   1   4
  TPTE WILD-TYPE 127  43  42
D156V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            7            127
  N1            1             43
  N2            4             42
                vv
clus              M0  M1 M1A
  TPTE MUTATED    10   1   0
  TPTE WILD-TYPE 179  30   1
D156V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  M0            10            179
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  TPTE MUTATED    2  4   4  1
  TPTE WILD-TYPE 46 78  56 28
D156V9, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  I              2             46
  II             4             78
  III            4             56
  IV             1             28
                vv
clus              R0  R1  R2  RX
  TPTE MUTATED    10   0   1   0
  TPTE WILD-TYPE 178   2  26   1
D156V10, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  R0           10            178
  R1            0              2
  R2            1             26
  RX            0              1
D156V11, continuous

Clustering(157) Variable = OR8B4 MUTATION ANALYSIS
D157V1, survival
                 sevent
clus2               0   1
  OR8B4 MUTATED     3   1
  OR8B4 WILD-TYPE 103  13
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              4             116 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
              1              13 
$`OR8B4 MUTATED`
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A024 TCGA-AF-2692 
        0.99        20.98        39.06        13.55 

$`OR8B4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 
        1.02        33.04        35.01        26.01        20.98        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  OR8B4 MUTATED OR8B4 WILD-TYPE 
           0.99            0.92 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
          39.06           72.07 
  OR8B4 MUTATED OR8B4 WILD-TYPE 
         17.265          10.770 
[1] "1.0 - 39.1 (17.3)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE"   "OR8B4 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR8B4 WILD-TYPE"   "OR8B4 MUTATED" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" "OR8B4 WILD-TYPE" 
[1] "hr=" "1.5"
D157V2, continuous
D157V3, binary
                 cls
clus                0   1
  OR8B4 MUTATED     5   0
  OR8B4 WILD-TYPE 149  68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      5    0
  OR8B4 WILD-TYPE  149   68
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D157V4, binary
                 cls
clus                0   1
  OR8B4 MUTATED     4   2
  OR8B4 WILD-TYPE 103 115
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8B4 MUTATED      4    2
  OR8B4 WILD-TYPE  103  115
        clus
vv       OR8B4 MUTATED OR8B4 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR8B4 MUTATED                      4                             1
  OR8B4 WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR8B4 MUTATED                       0                              0
  OR8B4 WILD-TYPE                    57                              8
D157V5, multiclass
                                clus
vv                               OR8B4 MUTATED OR8B4 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  OR8B4 MUTATED     0   1   4   1
  OR8B4 WILD-TYPE   9  46 146  16
D157V6, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             4             146
  T4             1              16
                 vv
clus               N0  N1  N2
  OR8B4 MUTATED     5   1   0
  OR8B4 WILD-TYPE 129  43  46
D157V7, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  OR8B4 MUTATED     6   0   0
  OR8B4 WILD-TYPE 183  31   1
D157V8, multiclass
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  OR8B4 MUTATED    1  4   1  0
  OR8B4 WILD-TYPE 47 78  59 29
D157V9, multiclass
     clus
vv    OR8B4 MUTATED OR8B4 WILD-TYPE
  I               1              47
  II              4              78
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  OR8B4 MUTATED     6   0   0   0
  OR8B4 WILD-TYPE 182   2  27   1
D157V10, multiclass
    clus
vv   OR8B4 MUTATED OR8B4 WILD-TYPE
  R0             6             182
  R1             0               2
  R2             0              27
  RX             0               1
D157V11, continuous

Clustering(158) Variable = SFMBT2 MUTATION ANALYSIS
D158V1, survival
                  sevent
clus2               0  1
  SFMBT2 MUTATED    8  0
  SFMBT2 WILD-TYPE 98 14
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               8              112 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               0               14 
$`SFMBT2 MUTATED`
TCGA-A6-2676 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         1.02        20.98 
TCGA-AA-A01R TCGA-AG-A01L 
       35.01        12.00 

$`SFMBT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            0.99             0.92 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
           35.01            72.07 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            6.51            10.95 
[1] "1.0 - 35.0 (6.5)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D158V2, continuous
D158V3, binary
                  cls
clus                 0   1
  SFMBT2 MUTATED    12   1
  SFMBT2 WILD-TYPE 142  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED     12    1
  SFMBT2 WILD-TYPE  142   67
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON              12              142
  RECTUM              1               67
D158V4, binary
                  cls
clus                 0   1
  SFMBT2 MUTATED     5   8
  SFMBT2 WILD-TYPE 102 109
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED      5    8
  SFMBT2 WILD-TYPE  102  109
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  FEMALE              5              102
  MALE                8              109
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SFMBT2 MUTATED                      9                             3
  SFMBT2 WILD-TYPE                  119                            21
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SFMBT2 MUTATED                       1                              0
  SFMBT2 WILD-TYPE                    56                              8
D158V5, multiclass
                                clus
vv                               SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON ADENOCARCINOMA                        9              119
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  SFMBT2 MUTATED     0   4   6   2
  SFMBT2 WILD-TYPE   9  43 144  15
D158V6, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  T1              0                9
  T2              4               43
  T3              6              144
  T4              2               15
                  vv
clus                N0  N1  N2
  SFMBT2 MUTATED     7   4   2
  SFMBT2 WILD-TYPE 127  40  44
D158V7, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  N0              7              127
  N1              4               40
  N2              2               44
                  vv
clus                M0  M1 M1A
  SFMBT2 MUTATED    10   2   0
  SFMBT2 WILD-TYPE 179  29   1
D158V8, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  M0              10              179
  M1               2               29
  M1A              0                1
                  vv
clus                I II III IV
  SFMBT2 MUTATED    2  4   4  2
  SFMBT2 WILD-TYPE 46 78  56 27
D158V9, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  I                2               46
  II               4               78
  III              4               56
  IV               2               27
                  vv
clus                R0  R1  R2  RX
  SFMBT2 MUTATED    10   0   2   0
  SFMBT2 WILD-TYPE 178   2  25   1
D158V10, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  R0             10              178
  R1              0                2
  R2              2               25
  RX              0                1
D158V11, continuous

Clustering(159) Variable = FLRT2 MUTATION ANALYSIS
D159V1, survival
                 sevent
clus2               0   1
  FLRT2 MUTATED     5   1
  FLRT2 WILD-TYPE 101  13
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              6             114 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              1              13 
$`FLRT2 MUTATED`
TCGA-A6-2676 TCGA-AA-A00N TCGA-AA-A00Z TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
       14.70         4.01        21.99        20.98         1.02        20.94 

$`FLRT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  FLRT2 MUTATED FLRT2 WILD-TYPE 
           1.02            0.92 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          21.99           72.07 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          17.82           10.77 
[1] "1.0 - 22.0 (17.8)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
[1] "hr=" "1.4"
D159V2, continuous
D159V3, binary
                 cls
clus                0   1
  FLRT2 MUTATED    11   2
  FLRT2 WILD-TYPE 143  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED     11    2
  FLRT2 WILD-TYPE  143   66
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON             11             143
  RECTUM             2              66
D159V4, binary
                 cls
clus                0   1
  FLRT2 MUTATED     8   5
  FLRT2 WILD-TYPE  99 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      8    5
  FLRT2 WILD-TYPE   99  112
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  FEMALE             8              99
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FLRT2 MUTATED                      8                             2
  FLRT2 WILD-TYPE                  120                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FLRT2 MUTATED                       2                              0
  FLRT2 WILD-TYPE                    55                              8
D159V5, multiclass
                                clus
vv                               FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON ADENOCARCINOMA                       8             120
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  FLRT2 MUTATED     2   1   7   2
  FLRT2 WILD-TYPE   7  46 143  15
D159V6, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  T1             2               7
  T2             1              46
  T3             7             143
  T4             2              15
                 vv
clus               N0  N1  N2
  FLRT2 MUTATED    10   1   2
  FLRT2 WILD-TYPE 124  43  44
D159V7, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  N0            10             124
  N1             1              43
  N2             2              44
                 vv
clus               M0  M1 M1A
  FLRT2 MUTATED    13   0   0
  FLRT2 WILD-TYPE 176  31   1
D159V8, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  M0             13             176
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  FLRT2 MUTATED    3  7   3  0
  FLRT2 WILD-TYPE 45 75  57 29
D159V9, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  I               3              45
  II              7              75
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  FLRT2 MUTATED    13   0   0   0
  FLRT2 WILD-TYPE 175   2  27   1
D159V10, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  R0            13             175
  R1             0               2
  R2             0              27
  RX             0               1
D159V11, continuous

Clustering(160) Variable = BCHE MUTATION ANALYSIS
D160V1, survival
                sevent
clus2              0   1
  BCHE MUTATED     6   0
  BCHE WILD-TYPE 100  14
  BCHE MUTATED BCHE WILD-TYPE 
             6            114 
  BCHE MUTATED BCHE WILD-TYPE 
             0             14 
$`BCHE MUTATED`
TCGA-AA-3811 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A01V TCGA-AG-4007 TCGA-AG-A002 
        0.99         1.02        30.02        35.01         1.02        20.94 

$`BCHE WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A008 
        0.99         0.99         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  BCHE MUTATED BCHE WILD-TYPE 
          0.99           0.92 
  BCHE MUTATED BCHE WILD-TYPE 
         35.01          72.07 
  BCHE MUTATED BCHE WILD-TYPE 
         10.98          10.95 
[1] "1.0 - 35.0 (11.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" "BCHE WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
[1] "hr="     "2.7e+07"
D160V2, continuous
D160V3, binary
                cls
clus               0   1
  BCHE MUTATED     7   2
  BCHE WILD-TYPE 147  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      7    2
  BCHE WILD-TYPE  147   66
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  COLON             7            147
  RECTUM            2             66
D160V4, binary
                cls
clus               0   1
  BCHE MUTATED     2   7
  BCHE WILD-TYPE 105 110
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      2    7
  BCHE WILD-TYPE  105  110
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            2            105
  MALE              7            110
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  BCHE MUTATED                      6                             1
  BCHE WILD-TYPE                  122                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  BCHE MUTATED                       2                              0
  BCHE WILD-TYPE                    55                              8
D160V5, multiclass
                                clus
vv                               BCHE MUTATED BCHE WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  BCHE MUTATED     0   4   4   1
  BCHE WILD-TYPE   9  43 146  16
D160V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            0              9
  T2            4             43
  T3            4            146
  T4            1             16
                vv
clus              N0  N1  N2
  BCHE MUTATED     6   0   3
  BCHE WILD-TYPE 128  44  43
D160V7, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  N0            6            128
  N1            0             44
  N2            3             43
                vv
clus              M0  M1 M1A
  BCHE MUTATED     7   1   0
  BCHE WILD-TYPE 182  30   1
D160V8, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  M0             7            182
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  BCHE MUTATED    3  2   2  1
  BCHE WILD-TYPE 45 80  58 28
D160V9, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  I              3             45
  II             2             80
  III            2             58
  IV             1             28
                vv
clus              R0  R1  R2  RX
  BCHE MUTATED     6   0   1   0
  BCHE WILD-TYPE 182   2  26   1
D160V10, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  R0            6            182
  R1            0              2
  R2            1             26
  RX            0              1
D160V11, continuous

Clustering(161) Variable = C8B MUTATION ANALYSIS
D161V1, survival
               sevent
clus2            0  1
  C8B MUTATED    8  2
  C8B WILD-TYPE 98 12
  C8B MUTATED C8B WILD-TYPE 
           10           110 
  C8B MUTATED C8B WILD-TYPE 
            2            12 
$`C8B MUTATED`
TCGA-A6-2677 TCGA-A6-2683 TCGA-AA-3666 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A01D 
       17.79        15.52         1.02         0.99         1.02         0.99 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A02J TCGA-AG-A002 
       33.04        35.01         5.03        20.94 

$`C8B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-3807 
       13.91        16.54        17.19        14.70        14.37        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        35.01         1.02        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  C8B MUTATED C8B WILD-TYPE 
         0.99          0.92 
  C8B MUTATED C8B WILD-TYPE 
        35.01         72.07 
  C8B MUTATED C8B WILD-TYPE 
       10.275        10.950 
[1] "1.0 - 35.0 (10.3)" "0.9 - 72.1 (10.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
[1] "hr=" "2.3"
D161V2, continuous
D161V3, binary
               cls
clus              0   1
  C8B MUTATED     9   1
  C8B WILD-TYPE 145  67
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      9    1
  C8B WILD-TYPE  145   67
        clus
vv       C8B MUTATED C8B WILD-TYPE
  COLON            9           145
  RECTUM           1            67
D161V4, binary
               cls
clus              0   1
  C8B MUTATED     7   3
  C8B WILD-TYPE 100 114
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      7    3
  C8B WILD-TYPE  100  114
        clus
vv       C8B MUTATED C8B WILD-TYPE
  FEMALE           7           100
  MALE             3           114
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  C8B MUTATED                      6                             3
  C8B WILD-TYPE                  122                            21
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  C8B MUTATED                       1                              0
  C8B WILD-TYPE                    56                              8
D161V5, multiclass
                                clus
vv                               C8B MUTATED C8B WILD-TYPE
  COLON ADENOCARCINOMA                     6           122
  COLON MUCINOUS ADENOCARCINOMA            3            21
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
               vv
clus             T1  T2  T3  T4
  C8B MUTATED     0   2   6   2
  C8B WILD-TYPE   9  45 144  15
D161V6, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  T1           0             9
  T2           2            45
  T3           6           144
  T4           2            15
               vv
clus             N0  N1  N2
  C8B MUTATED     6   2   2
  C8B WILD-TYPE 128  42  44
D161V7, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  N0           6           128
  N1           2            42
  N2           2            44
               vv
clus             M0  M1 M1A
  C8B MUTATED     8   2   0
  C8B WILD-TYPE 181  29   1
D161V8, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  M0            8           181
  M1            2            29
  M1A           0             1
               vv
clus             I II III IV
  C8B MUTATED    2  2   4  2
  C8B WILD-TYPE 46 80  56 27
D161V9, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  I             2            46
  II            2            80
  III           4            56
  IV            2            27
               vv
clus             R0  R1  R2  RX
  C8B MUTATED     8   0   1   0
  C8B WILD-TYPE 180   2  26   1
D161V10, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  R0           8           180
  R1           0             2
  R2           1            26
  RX           0             1
D161V11, continuous

Clustering(162) Variable = FREM2 MUTATION ANALYSIS
D162V1, survival
                 sevent
clus2              0  1
  FREM2 MUTATED   14  2
  FREM2 WILD-TYPE 92 12
  FREM2 MUTATED FREM2 WILD-TYPE 
             16             104 
  FREM2 MUTATED FREM2 WILD-TYPE 
              2              12 
$`FREM2 MUTATED`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3947 
       13.91        16.54        10.92         1.02         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01T 
        1.02        18.02        17.00        20.98        15.02        33.04 
TCGA-AA-A02O TCGA-AY-4071 TCGA-AG-3892 TCGA-AG-A002 
        0.92         0.95         1.02        20.94 

$`FREM2 WILD-TYPE`
TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 
       17.19        14.70        17.79        14.37        15.52         9.14 
TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
        8.09         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        1.02         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       21.99         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02        35.01         1.02        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 
       40.96        39.95        18.02        40.93        16.31        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  FREM2 MUTATED FREM2 WILD-TYPE 
           0.92            0.92 
  FREM2 MUTATED FREM2 WILD-TYPE 
          33.04           72.07 
  FREM2 MUTATED FREM2 WILD-TYPE 
         12.415          10.800 
[1] "0.9 - 33.0 (12.4)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FREM2 MUTATED"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FREM2 WILD-TYPE"   "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FREM2 MUTATED" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" "FREM2 WILD-TYPE" 
[1] "hr=" "1.5"
D162V2, continuous
D162V3, binary
                 cls
clus                0   1
  FREM2 MUTATED    17   5
  FREM2 WILD-TYPE 137  63
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     17    5
  FREM2 WILD-TYPE  137   63
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  COLON             17             137
  RECTUM             5              63
D162V4, binary
                 cls
clus                0   1
  FREM2 MUTATED    17   6
  FREM2 WILD-TYPE  90 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FREM2 MUTATED     17    6
  FREM2 WILD-TYPE   90  111
        clus
vv       FREM2 MUTATED FREM2 WILD-TYPE
  FEMALE            17              90
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FREM2 MUTATED                     14                             3
  FREM2 WILD-TYPE                  114                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FREM2 MUTATED                       4                              0
  FREM2 WILD-TYPE                    53                              8
D162V5, multiclass
                                clus
vv                               FREM2 MUTATED FREM2 WILD-TYPE
  COLON ADENOCARCINOMA                      14             114
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  FREM2 MUTATED     2   3  14   4
  FREM2 WILD-TYPE   7  44 136  13
D162V6, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  T1             2               7
  T2             3              44
  T3            14             136
  T4             4              13
                 vv
clus               N0  N1  N2
  FREM2 MUTATED    15   5   3
  FREM2 WILD-TYPE 119  39  43
D162V7, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  N0            15             119
  N1             5              39
  N2             3              43
                 vv
clus               M0  M1 M1A
  FREM2 MUTATED    20   1   0
  FREM2 WILD-TYPE 169  30   1
D162V8, multiclass
     clus
vv    FREM2 MUTATED FREM2 WILD-TYPE
  M0             20             169
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  FREM2 MUTATED    4 10   7  1
  FREM2 WILD-TYPE 44 72  53 28
D162V9, multiclass
     clus
vv    FREM2 MUTATED FREM2 WILD-TYPE
  I               4              44
  II             10              72
  III             7              53
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  FREM2 MUTATED    21   0   1   0
  FREM2 WILD-TYPE 167   2  26   1
D162V10, multiclass
    clus
vv   FREM2 MUTATED FREM2 WILD-TYPE
  R0            21             167
  R1             0               2
  R2             1              26
  RX             0               1
D162V11, continuous

Clustering(163) Variable = ZNF167 MUTATION ANALYSIS
D163V1, survival
                  sevent
clus2                0   1
  ZNF167 MUTATED     3   1
  ZNF167 WILD-TYPE 103  13
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               4              116 
  ZNF167 MUTATED ZNF167 WILD-TYPE 
               1               13 
$`ZNF167 MUTATED`
TCGA-AA-3715 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 
        0.99         4.01        20.98        20.94 

$`ZNF167 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ZNF167 MUTATED ZNF167 WILD-TYPE 
            0.99             0.92 
  ZNF167 MUTATED ZNF167 WILD-TYPE 
           20.98            72.07 
  ZNF167 MUTATED ZNF167 WILD-TYPE 
          12.475           10.950 
[1] "1.0 - 21.0 (12.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF167 WILD-TYPE"   "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "ZNF167 MUTATED" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" "ZNF167 WILD-TYPE" 
[1] "hr=" "2.5"
D163V2, continuous
D163V3, binary
                  cls
clus                 0   1
  ZNF167 MUTATED     6   1
  ZNF167 WILD-TYPE 148  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF167 MUTATED      6    1
  ZNF167 WILD-TYPE  148   67
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  COLON               6              148
  RECTUM              1               67
D163V4, binary
                  cls
clus                 0   1
  ZNF167 MUTATED     3   4
  ZNF167 WILD-TYPE 104 113
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF167 MUTATED      3    4
  ZNF167 WILD-TYPE  104  113
        clus
vv       ZNF167 MUTATED ZNF167 WILD-TYPE
  FEMALE              3              104
  MALE                4              113
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZNF167 MUTATED                      5                             1
  ZNF167 WILD-TYPE                  123                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZNF167 MUTATED                       1                              0
  ZNF167 WILD-TYPE                    56                              8
D163V5, multiclass
                                clus
vv                               ZNF167 MUTATED ZNF167 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  ZNF167 MUTATED     0   1   4   2
  ZNF167 WILD-TYPE   9  46 146  15
D163V6, multiclass
    clus
vv   ZNF167 MUTATED ZNF167 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              4              146
  T4              2               15
                  vv
clus                N0  N1  N2
  ZNF167 MUTATED     6   1   0
  ZNF167 WILD-TYPE 128  43  46
D163V7, multiclass
    clus
vv   ZNF167 MUTATED ZNF167 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              0               46
                  vv
clus                M0  M1 M1A
  ZNF167 MUTATED     6   1   0
  ZNF167 WILD-TYPE 183  30   1
D163V8, multiclass
     clus
vv    ZNF167 MUTATED ZNF167 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  ZNF167 MUTATED    1  5   0  1
  ZNF167 WILD-TYPE 47 77  60 28
D163V9, multiclass
     clus
vv    ZNF167 MUTATED ZNF167 WILD-TYPE
  I                1               47
  II               5               77
  III              0               60
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  ZNF167 MUTATED     6   0   1   0
  ZNF167 WILD-TYPE 182   2  26   1
D163V10, multiclass
    clus
vv   ZNF167 MUTATED ZNF167 WILD-TYPE
  R0              6              182
  R1              0                2
  R2              1               26
  RX              0                1
D163V11, continuous

Clustering(164) Variable = GABRG1 MUTATION ANALYSIS
D164V1, survival
                  sevent
clus2                0   1
  GABRG1 MUTATED     5   0
  GABRG1 WILD-TYPE 101  14
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               5              115 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
               0               14 
$`GABRG1 MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A010 TCGA-AG-A00C 
       10.92         0.99         0.99        20.98         6.02 

$`GABRG1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       20.94        13.91        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  GABRG1 MUTATED GABRG1 WILD-TYPE 
            0.99             0.92 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
           20.98            72.07 
  GABRG1 MUTATED GABRG1 WILD-TYPE 
            6.02            12.00 
[1] "1.0 - 21.0 (6.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRG1 MUTATED" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE"   "GABRG1 MUTATED" "GABRG1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" "GABRG1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D164V2, continuous
D164V3, binary
                  cls
clus                 0   1
  GABRG1 MUTATED     6   2
  GABRG1 WILD-TYPE 148  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      6    2
  GABRG1 WILD-TYPE  148   66
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  COLON               6              148
  RECTUM              2               66
D164V4, binary
                  cls
clus                 0   1
  GABRG1 MUTATED     7   1
  GABRG1 WILD-TYPE 100 116
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG1 MUTATED      7    1
  GABRG1 WILD-TYPE  100  116
        clus
vv       GABRG1 MUTATED GABRG1 WILD-TYPE
  FEMALE              7              100
  MALE                1              116
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GABRG1 MUTATED                      4                             2
  GABRG1 WILD-TYPE                  124                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GABRG1 MUTATED                       2                              0
  GABRG1 WILD-TYPE                    55                              8
D164V5, multiclass
                                clus
vv                               GABRG1 MUTATED GABRG1 WILD-TYPE
  COLON ADENOCARCINOMA                        4              124
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  GABRG1 MUTATED     0   1   5   2
  GABRG1 WILD-TYPE   9  46 145  15
D164V6, multiclass
    clus
vv   GABRG1 MUTATED GABRG1 WILD-TYPE
  T1              0                9
  T2              1               46
  T3              5              145
  T4              2               15
                  vv
clus                N0  N1  N2
  GABRG1 MUTATED     5   1   2
  GABRG1 WILD-TYPE 129  43  44
D164V7, multiclass
    clus
vv   GABRG1 MUTATED GABRG1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              2               44
                  vv
clus                M0  M1 M1A
  GABRG1 MUTATED     8   0   0
  GABRG1 WILD-TYPE 181  31   1
D164V8, multiclass
     clus
vv    GABRG1 MUTATED GABRG1 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  GABRG1 MUTATED    1  4   3  0
  GABRG1 WILD-TYPE 47 78  57 29
D164V9, multiclass
     clus
vv    GABRG1 MUTATED GABRG1 WILD-TYPE
  I                1               47
  II               4               78
  III              3               57
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  GABRG1 MUTATED     8   0   0   0
  GABRG1 WILD-TYPE 180   2  27   1
D164V10, multiclass
    clus
vv   GABRG1 MUTATED GABRG1 WILD-TYPE
  R0              8              180
  R1              0                2
  R2              0               27
  RX              0                1
D164V11, continuous

Clustering(165) Variable = SAT1 MUTATION ANALYSIS
D165V1, survival
                sevent
clus2              0   1
  SAT1 MUTATED     2   0
  SAT1 WILD-TYPE 104  14
  SAT1 MUTATED SAT1 WILD-TYPE 
             2            118 
  SAT1 MUTATED SAT1 WILD-TYPE 
             0             14 
$`SAT1 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 
        0.99         0.99 

$`SAT1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99           0.92 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          72.07 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          11.49 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
[1] "Remove cluster labels:" "SAT1 MUTATED"          
clus
  SAT1 MUTATED SAT1 WILD-TYPE 
             2            118 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3818 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3952     TCGA-AA-3966 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986     TCGA-AA-A004 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AY-4071     TCGA-AF-2689     TCGA-AF-2691     TCGA-AF-2692 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AF-3400     TCGA-AF-3913     TCGA-AG-3581     TCGA-AG-3582 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3583     TCGA-AG-3587     TCGA-AG-3599     TCGA-AG-3726 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3727     TCGA-AG-3878     TCGA-AG-3887     TCGA-AG-3892 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-3893     TCGA-AG-3894     TCGA-AG-3999     TCGA-AG-4001 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-4007     TCGA-AG-4008     TCGA-AG-A002     TCGA-AG-A008 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A00C     TCGA-AG-A00H     TCGA-AG-A00Y     TCGA-AG-A011 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A014     TCGA-AG-A015     TCGA-AG-A016     TCGA-AG-A01L 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A01W     TCGA-AG-A01Y     TCGA-AG-A020     TCGA-AG-A025 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A026     TCGA-AG-A02G     TCGA-AG-A02N     TCGA-AG-A02X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AG-A032     TCGA-AG-A036 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
D165V2, continuous
D165V3, binary
                cls
clus               0   1
  SAT1 MUTATED     4   0
  SAT1 WILD-TYPE 150  68
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  150   68
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  COLON             4            150
  RECTUM            0             68
D165V4, binary
                cls
clus               0   1
  SAT1 MUTATED     4   0
  SAT1 WILD-TYPE 103 117
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE  103  117
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  FEMALE            4            103
  MALE              0            117
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SAT1 MUTATED                      3                             1
  SAT1 WILD-TYPE                  125                            23
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SAT1 MUTATED                       0                              0
  SAT1 WILD-TYPE                    57                              8
D165V5, multiclass
                                clus
vv                               SAT1 MUTATED SAT1 WILD-TYPE
  COLON ADENOCARCINOMA                      3            125
  COLON MUCINOUS ADENOCARCINOMA             1             23
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  SAT1 MUTATED     0   1   3   0
  SAT1 WILD-TYPE   9  46 147  17
D165V6, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            3            147
  T4            0             17
                vv
clus              N0  N1  N2
  SAT1 MUTATED     2   1   1
  SAT1 WILD-TYPE 132  43  45
D165V7, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  N0            2            132
  N1            1             43
  N2            1             45
                vv
clus              M0  M1 M1A
  SAT1 MUTATED     4   0   0
  SAT1 WILD-TYPE 185  31   1
D165V8, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  M0             4            185
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  SAT1 MUTATED    1  1   2  0
  SAT1 WILD-TYPE 47 81  58 29
D165V9, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  I              1             47
  II             1             81
  III            2             58
  IV             0             29
                vv
clus              R0  R1  R2  RX
  SAT1 MUTATED     4   0   0   0
  SAT1 WILD-TYPE 184   2  27   1
D165V10, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  R0            4            184
  R1            0              2
  R2            0             27
  RX            0              1
D165V11, continuous

Clustering(166) Variable = CHD4 MUTATION ANALYSIS
D166V1, survival
                sevent
clus2             0  1
  CHD4 MUTATED    9  1
  CHD4 WILD-TYPE 97 13
  CHD4 MUTATED CHD4 WILD-TYPE 
            10            110 
  CHD4 MUTATED CHD4 WILD-TYPE 
             1             13 
$`CHD4 MUTATED`
TCGA-AA-3518 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A03F 
        1.02         0.99         0.99         1.02        20.98        18.02 
TCGA-AG-3599 TCGA-AG-3892 TCGA-AG-4007 TCGA-AG-A002 
        0.99         1.02         1.02        20.94 

$`CHD4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        39.95        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  CHD4 MUTATED CHD4 WILD-TYPE 
          0.99           0.92 
  CHD4 MUTATED CHD4 WILD-TYPE 
         20.98          72.07 
  CHD4 MUTATED CHD4 WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED"   "CHD4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED"   "CHD4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED"   "CHD4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE"   "CHD4 MUTATED" "CHD4 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "CHD4 MUTATED" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" "CHD4 WILD-TYPE" 
[1] "hr=" "1.5"
D166V2, continuous
D166V3, binary
                cls
clus               0   1
  CHD4 MUTATED    12   5
  CHD4 WILD-TYPE 142  63
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED     12    5
  CHD4 WILD-TYPE  142   63
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  COLON            12            142
  RECTUM            5             63
D166V4, binary
                cls
clus               0   1
  CHD4 MUTATED     8   9
  CHD4 WILD-TYPE  99 108
[1] "tbl2"
                cls
clus             [,1] [,2]
  CHD4 MUTATED      8    9
  CHD4 WILD-TYPE   99  108
        clus
vv       CHD4 MUTATED CHD4 WILD-TYPE
  FEMALE            8             99
  MALE              9            108
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CHD4 MUTATED                      9                             3
  CHD4 WILD-TYPE                  119                            21
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CHD4 MUTATED                       3                              1
  CHD4 WILD-TYPE                    54                              7
D166V5, multiclass
                                clus
vv                               CHD4 MUTATED CHD4 WILD-TYPE
  COLON ADENOCARCINOMA                      9            119
  COLON MUCINOUS ADENOCARCINOMA             3             21
  RECTAL ADENOCARCINOMA                     3             54
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  CHD4 MUTATED     1   5   9   2
  CHD4 WILD-TYPE   8  42 141  15
D166V6, multiclass
    clus
vv   CHD4 MUTATED CHD4 WILD-TYPE
  T1            1              8
  T2            5             42
  T3            9            141
  T4            2             15
                vv
clus              N0  N1  N2
  CHD4 MUTATED    14   0   3
  CHD4 WILD-TYPE 120  44  43
D166V7, multiclass
    clus
vv   CHD4 MUTATED CHD4 WILD-TYPE
  N0           14            120
  N1            0             44
  N2            3             43
                vv
clus              M0  M1 M1A
  CHD4 MUTATED    15   1   0
  CHD4 WILD-TYPE 174  30   1
D166V8, multiclass
     clus
vv    CHD4 MUTATED CHD4 WILD-TYPE
  M0            15            174
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  CHD4 MUTATED    5  8   2  1
  CHD4 WILD-TYPE 43 74  58 28
D166V9, multiclass
     clus
vv    CHD4 MUTATED CHD4 WILD-TYPE
  I              5             43
  II             8             74
  III            2             58
  IV             1             28
                vv
clus              R0  R1  R2  RX
  CHD4 MUTATED    15   0   1   0
  CHD4 WILD-TYPE 173   2  26   1
D166V10, multiclass
    clus
vv   CHD4 MUTATED CHD4 WILD-TYPE
  R0           15            173
  R1            0              2
  R2            1             26
  RX            0              1
D166V11, continuous

Clustering(167) Variable = PCDHB2 MUTATION ANALYSIS
D167V1, survival
                  sevent
clus2               0  1
  PCDHB2 MUTATED   10  0
  PCDHB2 WILD-TYPE 96 14
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              10              110 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               0               14 
$`PCDHB2 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3977 
       16.54        17.19         0.99         0.99         0.99         1.02 
TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01Q TCGA-AG-A002 
       30.02        20.98         1.02        20.94 

$`PCDHB2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            0.99             0.92 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
           30.02            72.07 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            8.78            10.95 
[1] "1.0 - 30.0 (8.8)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D167V2, continuous
D167V3, binary
                  cls
clus                 0   1
  PCDHB2 MUTATED    13   1
  PCDHB2 WILD-TYPE 141  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     13    1
  PCDHB2 WILD-TYPE  141   67
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON              13              141
  RECTUM              1               67
D167V4, binary
                  cls
clus                 0   1
  PCDHB2 MUTATED     8   6
  PCDHB2 WILD-TYPE  99 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED      8    6
  PCDHB2 WILD-TYPE   99  111
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  FEMALE              8               99
  MALE                6              111
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PCDHB2 MUTATED                     11                             2
  PCDHB2 WILD-TYPE                  117                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PCDHB2 MUTATED                       1                              0
  PCDHB2 WILD-TYPE                    56                              8
D167V5, multiclass
                                clus
vv                               PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  PCDHB2 MUTATED     0   3   9   2
  PCDHB2 WILD-TYPE   9  44 141  15
D167V6, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  T1              0                9
  T2              3               44
  T3              9              141
  T4              2               15
                  vv
clus                N0  N1  N2
  PCDHB2 MUTATED     8   4   2
  PCDHB2 WILD-TYPE 126  40  44
D167V7, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  N0              8              126
  N1              4               40
  N2              2               44
                  vv
clus                M0  M1 M1A
  PCDHB2 MUTATED    11   2   0
  PCDHB2 WILD-TYPE 178  29   1
D167V8, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  M0              11              178
  M1               2               29
  M1A              0                1
                  vv
clus                I II III IV
  PCDHB2 MUTATED    2  5   4  1
  PCDHB2 WILD-TYPE 46 77  56 28
D167V9, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  I                2               46
  II               5               77
  III              4               56
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  PCDHB2 MUTATED    12   0   1   0
  PCDHB2 WILD-TYPE 176   2  26   1
D167V10, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  R0             12              176
  R1              0                2
  R2              1               26
  RX              0                1
D167V11, continuous

Clustering(168) Variable = TMTC1 MUTATION ANALYSIS
D168V1, survival
                 sevent
clus2              0  1
  TMTC1 MUTATED   10  1
  TMTC1 WILD-TYPE 96 13
  TMTC1 MUTATED TMTC1 WILD-TYPE 
             11             109 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
              1              13 
$`TMTC1 MUTATED`
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00R 
        0.99         0.99         1.02         1.02        18.02         0.99 
TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-3999 TCGA-AG-A002 TCGA-AG-A011 
       35.01         1.02         1.02        20.94        17.03 

$`TMTC1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       30.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
       27.02        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-4001 TCGA-AG-4007 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 
        1.02        13.91         6.02        25.94        23.01        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  TMTC1 MUTATED TMTC1 WILD-TYPE 
           0.99            0.92 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
          35.01           72.07 
  TMTC1 MUTATED TMTC1 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"TMTC1 WILD-TYPE"   "TMTC1 MUTATED" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" "TMTC1 WILD-TYPE" 
[1] "hr=" "1.2"
D168V2, continuous
D168V3, binary
                 cls
clus                0   1
  TMTC1 MUTATED     9   4
  TMTC1 WILD-TYPE 145  64
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      9    4
  TMTC1 WILD-TYPE  145   64
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  COLON              9             145
  RECTUM             4              64
D168V4, binary
                 cls
clus                0   1
  TMTC1 MUTATED     6   7
  TMTC1 WILD-TYPE 101 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TMTC1 MUTATED      6    7
  TMTC1 WILD-TYPE  101  110
        clus
vv       TMTC1 MUTATED TMTC1 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TMTC1 MUTATED                      6                             3
  TMTC1 WILD-TYPE                  122                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TMTC1 MUTATED                       4                              0
  TMTC1 WILD-TYPE                    53                              8
D168V5, multiclass
                                clus
vv                               TMTC1 MUTATED TMTC1 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      4              53
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  TMTC1 MUTATED     1   3   8   1
  TMTC1 WILD-TYPE   8  44 142  16
D168V6, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             8             142
  T4             1              16
                 vv
clus               N0  N1  N2
  TMTC1 MUTATED     9   2   2
  TMTC1 WILD-TYPE 125  42  44
D168V7, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  TMTC1 MUTATED    12   0   0
  TMTC1 WILD-TYPE 177  31   1
D168V8, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  M0             12             177
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  TMTC1 MUTATED    3  5   4  0
  TMTC1 WILD-TYPE 45 77  56 29
D168V9, multiclass
     clus
vv    TMTC1 MUTATED TMTC1 WILD-TYPE
  I               3              45
  II              5              77
  III             4              56
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  TMTC1 MUTATED    10   0   0   0
  TMTC1 WILD-TYPE 178   2  27   1
D168V10, multiclass
    clus
vv   TMTC1 MUTATED TMTC1 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             0              27
  RX             0               1
D168V11, continuous

Clustering(169) Variable = SH3GL3 MUTATION ANALYSIS
D169V1, survival
                  sevent
clus2                0   1
  SH3GL3 MUTATED     5   1
  SH3GL3 WILD-TYPE 101  13
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               6              114 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
               1               13 
$`SH3GL3 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01S TCGA-AG-4001 TCGA-AG-A002 TCGA-AG-A026 
        1.02        20.98         1.02         1.02        20.94         1.94 

$`SH3GL3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94        38.93        61.94        40.96        38.01        72.07 

  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
            1.02             0.92 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
           20.98            72.07 
  SH3GL3 MUTATED SH3GL3 WILD-TYPE 
            1.48            11.49 
[1] "1.0 - 21.0 (1.5)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE"   "SH3GL3 MUTATED" "SH3GL3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" "SH3GL3 WILD-TYPE" 
[1] "hr=" "2.1"
D169V2, continuous
D169V3, binary
                  cls
clus                 0   1
  SH3GL3 MUTATED     5   3
  SH3GL3 WILD-TYPE 149  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      5    3
  SH3GL3 WILD-TYPE  149   65
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D169V4, binary
                  cls
clus                 0   1
  SH3GL3 MUTATED     5   3
  SH3GL3 WILD-TYPE 102 114
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SH3GL3 MUTATED      5    3
  SH3GL3 WILD-TYPE  102  114
        clus
vv       SH3GL3 MUTATED SH3GL3 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SH3GL3 MUTATED                      5                             0
  SH3GL3 WILD-TYPE                  123                            24
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SH3GL3 MUTATED                       3                              0
  SH3GL3 WILD-TYPE                    54                              8
D169V5, multiclass
                                clus
vv                               SH3GL3 MUTATED SH3GL3 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  SH3GL3 MUTATED     0   2   4   2
  SH3GL3 WILD-TYPE   9  45 146  15
D169V6, multiclass
    clus
vv   SH3GL3 MUTATED SH3GL3 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              2               15
                  vv
clus                N0  N1  N2
  SH3GL3 MUTATED     6   2   0
  SH3GL3 WILD-TYPE 128  42  46
D169V7, multiclass
    clus
vv   SH3GL3 MUTATED SH3GL3 WILD-TYPE
  N0              6              128
  N1              2               42
  N2              0               46
                  vv
clus                M0  M1 M1A
  SH3GL3 MUTATED     7   0   0
  SH3GL3 WILD-TYPE 182  31   1
D169V8, multiclass
     clus
vv    SH3GL3 MUTATED SH3GL3 WILD-TYPE
  M0               7              182
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  SH3GL3 MUTATED    1  4   2  0
  SH3GL3 WILD-TYPE 47 78  58 29
D169V9, multiclass
     clus
vv    SH3GL3 MUTATED SH3GL3 WILD-TYPE
  I                1               47
  II               4               78
  III              2               58
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  SH3GL3 MUTATED     6   1   0   0
  SH3GL3 WILD-TYPE 182   1  27   1
D169V10, multiclass
    clus
vv   SH3GL3 MUTATED SH3GL3 WILD-TYPE
  R0              6              182
  R1              1                1
  R2              0               27
  RX              0                1
D169V11, continuous

Clustering(170) Variable = ZFPM2 MUTATION ANALYSIS
D170V1, survival
                 sevent
clus2               0   1
  ZFPM2 MUTATED     3   1
  ZFPM2 WILD-TYPE 103  13
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              4             116 
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
              1              13 
$`ZFPM2 MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3893 TCGA-AG-A002 
        4.01        20.98         0.99        20.94 

$`ZFPM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         1.02         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
           0.99            0.92 
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
          20.98           72.07 
  ZFPM2 MUTATED ZFPM2 WILD-TYPE 
         12.475          10.950 
[1] "1.0 - 21.0 (12.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE"   "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZFPM2 MUTATED" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" "ZFPM2 WILD-TYPE" 
[1] "hr=" "2.5"
D170V2, continuous
D170V3, binary
                 cls
clus                0   1
  ZFPM2 MUTATED     3   3
  ZFPM2 WILD-TYPE 151  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFPM2 MUTATED      3    3
  ZFPM2 WILD-TYPE  151   65
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  COLON              3             151
  RECTUM             3              65
D170V4, binary
                 cls
clus                0   1
  ZFPM2 MUTATED     1   5
  ZFPM2 WILD-TYPE 106 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFPM2 MUTATED      1    5
  ZFPM2 WILD-TYPE  106  112
        clus
vv       ZFPM2 MUTATED ZFPM2 WILD-TYPE
  FEMALE             1             106
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZFPM2 MUTATED                      2                             1
  ZFPM2 WILD-TYPE                  126                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZFPM2 MUTATED                       3                              0
  ZFPM2 WILD-TYPE                    54                              8
D170V5, multiclass
                                clus
vv                               ZFPM2 MUTATED ZFPM2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ZFPM2 MUTATED     0   1   3   2
  ZFPM2 WILD-TYPE   9  46 147  15
D170V6, multiclass
    clus
vv   ZFPM2 MUTATED ZFPM2 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             3             147
  T4             2              15
                 vv
clus               N0  N1  N2
  ZFPM2 MUTATED     5   1   0
  ZFPM2 WILD-TYPE 129  43  46
D170V7, multiclass
    clus
vv   ZFPM2 MUTATED ZFPM2 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  ZFPM2 MUTATED     6   0   0
  ZFPM2 WILD-TYPE 183  31   1
D170V8, multiclass
     clus
vv    ZFPM2 MUTATED ZFPM2 WILD-TYPE
  M0              6             183
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  ZFPM2 MUTATED    1  4   1  0
  ZFPM2 WILD-TYPE 47 78  59 29
D170V9, multiclass
     clus
vv    ZFPM2 MUTATED ZFPM2 WILD-TYPE
  I               1              47
  II              4              78
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  ZFPM2 MUTATED     6   0   0   0
  ZFPM2 WILD-TYPE 182   2  27   1
D170V10, multiclass
    clus
vv   ZFPM2 MUTATED ZFPM2 WILD-TYPE
  R0             6             182
  R1             0               2
  R2             0              27
  RX             0               1
D170V11, continuous

Clustering(171) Variable = CACNG3 MUTATION ANALYSIS
D171V1, survival
                  sevent
clus2                0   1
  CACNG3 MUTATED     6   0
  CACNG3 WILD-TYPE 100  14
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               6              114 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
               0               14 
$`CACNG3 MUTATED`
TCGA-A6-3808 TCGA-AA-A010 TCGA-AA-A01D TCGA-AG-3892 TCGA-AG-3894 TCGA-AG-A002 
        9.14        20.98         0.99         1.02         0.99        20.94 

$`CACNG3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99        15.02        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3893 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  CACNG3 MUTATED CACNG3 WILD-TYPE 
            0.99             0.92 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
           20.98            72.07 
  CACNG3 MUTATED CACNG3 WILD-TYPE 
            5.08            11.49 
[1] "1.0 - 21.0 (5.1)"  "0.9 - 72.1 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CACNG3 WILD-TYPE"   "CACNG3 MUTATED" "CACNG3 WILD-TYPE"   "CACNG3 MUTATED" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "CACNG3 MUTATED" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" "CACNG3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D171V2, continuous
D171V3, binary
                  cls
clus                 0   1
  CACNG3 MUTATED     5   3
  CACNG3 WILD-TYPE 149  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      5    3
  CACNG3 WILD-TYPE  149   65
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  COLON               5              149
  RECTUM              3               65
D171V4, binary
                  cls
clus                 0   1
  CACNG3 MUTATED     5   3
  CACNG3 WILD-TYPE 102 114
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CACNG3 MUTATED      5    3
  CACNG3 WILD-TYPE  102  114
        clus
vv       CACNG3 MUTATED CACNG3 WILD-TYPE
  FEMALE              5              102
  MALE                3              114
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CACNG3 MUTATED                      3                             2
  CACNG3 WILD-TYPE                  125                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CACNG3 MUTATED                       3                              0
  CACNG3 WILD-TYPE                    54                              8
D171V5, multiclass
                                clus
vv                               CACNG3 MUTATED CACNG3 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  CACNG3 MUTATED     1   1   5   1
  CACNG3 WILD-TYPE   8  46 145  16
D171V6, multiclass
    clus
vv   CACNG3 MUTATED CACNG3 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              5              145
  T4              1               16
                  vv
clus                N0  N1  N2
  CACNG3 MUTATED     6   1   1
  CACNG3 WILD-TYPE 128  43  45
D171V7, multiclass
    clus
vv   CACNG3 MUTATED CACNG3 WILD-TYPE
  N0              6              128
  N1              1               43
  N2              1               45
                  vv
clus                M0  M1 M1A
  CACNG3 MUTATED     8   0   0
  CACNG3 WILD-TYPE 181  31   1
D171V8, multiclass
     clus
vv    CACNG3 MUTATED CACNG3 WILD-TYPE
  M0               8              181
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  CACNG3 MUTATED    2  4   2  0
  CACNG3 WILD-TYPE 46 78  58 29
D171V9, multiclass
     clus
vv    CACNG3 MUTATED CACNG3 WILD-TYPE
  I                2               46
  II               4               78
  III              2               58
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  CACNG3 MUTATED     8   0   0   0
  CACNG3 WILD-TYPE 180   2  27   1
D171V10, multiclass
    clus
vv   CACNG3 MUTATED CACNG3 WILD-TYPE
  R0              8              180
  R1              0                2
  R2              0               27
  RX              0                1
D171V11, continuous

Clustering(172) Variable = POTEB MUTATION ANALYSIS
D172V1, survival
                 sevent
clus2               0   1
  POTEB MUTATED     4   0
  POTEB WILD-TYPE 102  14
  POTEB MUTATED POTEB WILD-TYPE 
              4             116 
  POTEB MUTATED POTEB WILD-TYPE 
              0              14 
$`POTEB MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AG-3887 TCGA-AG-A002 
        0.99         1.02         0.92        20.94 

$`POTEB WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  POTEB MUTATED POTEB WILD-TYPE 
           0.92            0.92 
  POTEB MUTATED POTEB WILD-TYPE 
          20.94           72.07 
  POTEB MUTATED POTEB WILD-TYPE 
          1.005          11.490 
[1] "0.9 - 20.9 (1.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" "POTEB WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE"   "POTEB MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "POTEB MUTATED" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" "POTEB WILD-TYPE" 
[1] "hr="     "9200000"
D172V2, continuous
D172V3, binary
                 cls
clus                0   1
  POTEB MUTATED     5   3
  POTEB WILD-TYPE 149  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      5    3
  POTEB WILD-TYPE  149   65
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  COLON              5             149
  RECTUM             3              65
D172V4, binary
                 cls
clus                0   1
  POTEB MUTATED     4   4
  POTEB WILD-TYPE 103 113
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEB MUTATED      4    4
  POTEB WILD-TYPE  103  113
        clus
vv       POTEB MUTATED POTEB WILD-TYPE
  FEMALE             4             103
  MALE               4             113
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  POTEB MUTATED                      4                             1
  POTEB WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  POTEB MUTATED                       2                              1
  POTEB WILD-TYPE                    55                              7
D172V5, multiclass
                                clus
vv                               POTEB MUTATED POTEB WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             1               7
                 vv
clus               T1  T2  T3  T4
  POTEB MUTATED     0   2   4   2
  POTEB WILD-TYPE   9  45 146  15
D172V6, multiclass
    clus
vv   POTEB MUTATED POTEB WILD-TYPE
  T1             0               9
  T2             2              45
  T3             4             146
  T4             2              15
                 vv
clus               N0  N1  N2
  POTEB MUTATED     7   1   0
  POTEB WILD-TYPE 127  43  46
D172V7, multiclass
    clus
vv   POTEB MUTATED POTEB WILD-TYPE
  N0             7             127
  N1             1              43
  N2             0              46
                 vv
clus               M0  M1 M1A
  POTEB MUTATED     7   0   0
  POTEB WILD-TYPE 182  31   1
D172V8, multiclass
     clus
vv    POTEB MUTATED POTEB WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  POTEB MUTATED    1  5   1  0
  POTEB WILD-TYPE 47 77  59 29
D172V9, multiclass
     clus
vv    POTEB MUTATED POTEB WILD-TYPE
  I               1              47
  II              5              77
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  POTEB MUTATED     7   0   0   0
  POTEB WILD-TYPE 181   2  27   1
D172V10, multiclass
    clus
vv   POTEB MUTATED POTEB WILD-TYPE
  R0             7             181
  R1             0               2
  R2             0              27
  RX             0               1
D172V11, continuous

Clustering(173) Variable = GRIN2A MUTATION ANALYSIS
D173V1, survival
                  sevent
clus2               0  1
  GRIN2A MUTATED    9  2
  GRIN2A WILD-TYPE 97 12
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              11              109 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
               2               12 
$`GRIN2A MUTATED`
TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A010 
        0.99         1.02        30.02        17.00         4.01        20.98 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AG-3727 TCGA-AG-A002 
       38.07         1.02        35.01         0.95        20.94 

$`GRIN2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00O 
       18.02        19.00        34.03        18.02        18.02        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01S 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        1.02         0.99         1.02         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  GRIN2A MUTATED GRIN2A WILD-TYPE 
            0.95             0.92 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
           38.07            72.07 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
           17.00            10.92 
[1] "0.9 - 38.1 (17.0)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
[1] "hr=" "1.8"
D173V2, continuous
D173V3, binary
                  cls
clus                 0   1
  GRIN2A MUTATED    15   4
  GRIN2A WILD-TYPE 139  64
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED     15    4
  GRIN2A WILD-TYPE  139   64
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  COLON              15              139
  RECTUM              4               64
D173V4, binary
                  cls
clus                 0   1
  GRIN2A MUTATED     7  12
  GRIN2A WILD-TYPE 100 105
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED      7   12
  GRIN2A WILD-TYPE  100  105
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  FEMALE              7              100
  MALE               12              105
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GRIN2A MUTATED                     13                             2
  GRIN2A WILD-TYPE                  115                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GRIN2A MUTATED                       4                              0
  GRIN2A WILD-TYPE                    53                              8
D173V5, multiclass
                                clus
vv                               GRIN2A MUTATED GRIN2A WILD-TYPE
  COLON ADENOCARCINOMA                       13              115
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       4               53
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  GRIN2A MUTATED     0   3  13   3
  GRIN2A WILD-TYPE   9  44 137  14
D173V6, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  T1              0                9
  T2              3               44
  T3             13              137
  T4              3               14
                  vv
clus                N0  N1  N2
  GRIN2A MUTATED    11   7   1
  GRIN2A WILD-TYPE 123  37  45
D173V7, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  N0             11              123
  N1              7               37
  N2              1               45
                  vv
clus                M0  M1 M1A
  GRIN2A MUTATED    16   2   0
  GRIN2A WILD-TYPE 173  29   1
D173V8, multiclass
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  M0              16              173
  M1               2               29
  M1A              0                1
                  vv
clus                I II III IV
  GRIN2A MUTATED    2  8   6  2
  GRIN2A WILD-TYPE 46 74  54 27
D173V9, multiclass
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  I                2               46
  II               8               74
  III              6               54
  IV               2               27
                  vv
clus                R0  R1  R2  RX
  GRIN2A MUTATED    15   0   2   0
  GRIN2A WILD-TYPE 173   2  25   1
D173V10, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  R0             15              173
  R1              0                2
  R2              2               25
  RX              0                1
D173V11, continuous

Clustering(174) Variable = NRXN3 MUTATION ANALYSIS
D174V1, survival
                 sevent
clus2              0  1
  NRXN3 MUTATED    7  1
  NRXN3 WILD-TYPE 99 13
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              8             112 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              1              13 
$`NRXN3 MUTATED`
TCGA-A6-2672 TCGA-A6-2678 TCGA-AA-3949 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 
       16.54        14.37         0.99        18.02         4.01        20.98 
TCGA-AG-3599 TCGA-AG-A002 
        0.99        20.94 

$`NRXN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  NRXN3 MUTATED NRXN3 WILD-TYPE 
           0.99            0.92 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
          20.98           72.07 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
         15.455          10.770 
[1] "1.0 - 21.0 (15.5)" "0.9 - 72.1 (10.8)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
[1] "hr=" "1.2"
D174V2, continuous
D174V3, binary
                 cls
clus                0   1
  NRXN3 MUTATED    15   2
  NRXN3 WILD-TYPE 139  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     15    2
  NRXN3 WILD-TYPE  139   66
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON             15             139
  RECTUM             2              66
D174V4, binary
                 cls
clus                0   1
  NRXN3 MUTATED     7  10
  NRXN3 WILD-TYPE 100 107
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED      7   10
  NRXN3 WILD-TYPE  100  107
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  FEMALE             7             100
  MALE              10             107
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  NRXN3 MUTATED                     11                             4
  NRXN3 WILD-TYPE                  117                            20
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  NRXN3 MUTATED                       1                              0
  NRXN3 WILD-TYPE                    56                              8
D174V5, multiclass
                                clus
vv                               NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              4              20
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  NRXN3 MUTATED     0   5  10   2
  NRXN3 WILD-TYPE   9  42 140  15
D174V6, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  T1             0               9
  T2             5              42
  T3            10             140
  T4             2              15
                 vv
clus               N0  N1  N2
  NRXN3 MUTATED    12   4   1
  NRXN3 WILD-TYPE 122  40  45
D174V7, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  N0            12             122
  N1             4              40
  N2             1              45
                 vv
clus               M0  M1 M1A
  NRXN3 MUTATED    16   0   0
  NRXN3 WILD-TYPE 173  31   1
D174V8, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  M0             16             173
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  NRXN3 MUTATED    4  7   5  0
  NRXN3 WILD-TYPE 44 75  55 29
D174V9, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  I               4              44
  II              7              75
  III             5              55
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  NRXN3 MUTATED    15   0   1   0
  NRXN3 WILD-TYPE 173   2  26   1
D174V10, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  R0            15             173
  R1             0               2
  R2             1              26
  RX             0               1
D174V11, continuous

Clustering(175) Variable = OR7C1 MUTATION ANALYSIS
D175V1, survival
                 sevent
clus2               0   1
  OR7C1 MUTATED     1   1
  OR7C1 WILD-TYPE 105  13
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             118 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              1              13 
$`OR7C1 MUTATED`
TCGA-AA-3518 TCGA-AY-4071 
        1.02         0.95 

$`OR7C1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 
       40.96        39.95        18.02        40.93        16.31        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  OR7C1 MUTATED OR7C1 WILD-TYPE 
           0.95            0.92 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
           1.02           72.07 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
          0.985          11.490 
[1] "0.9 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2             118 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3526      TCGA-AA-3555 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AF-2689      TCGA-AF-2691      TCGA-AF-2692 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AF-3400      TCGA-AF-3913      TCGA-AG-3581      TCGA-AG-3582 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3583      TCGA-AG-3587      TCGA-AG-3599      TCGA-AG-3726 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3727      TCGA-AG-3878      TCGA-AG-3887      TCGA-AG-3892 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-3893      TCGA-AG-3894      TCGA-AG-3999      TCGA-AG-4001 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-4007      TCGA-AG-4008      TCGA-AG-A002      TCGA-AG-A008 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A00C      TCGA-AG-A00H      TCGA-AG-A00Y      TCGA-AG-A011 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A014      TCGA-AG-A015      TCGA-AG-A016      TCGA-AG-A01L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A01W      TCGA-AG-A01Y      TCGA-AG-A020      TCGA-AG-A025 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A026      TCGA-AG-A02G      TCGA-AG-A02N      TCGA-AG-A02X 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AG-A032      TCGA-AG-A036 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
D175V2, continuous
D175V3, binary
                 cls
clus                0   1
  OR7C1 MUTATED     5   0
  OR7C1 WILD-TYPE 149  68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      5    0
  OR7C1 WILD-TYPE  149   68
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D175V4, binary
                 cls
clus                0   1
  OR7C1 MUTATED     4   2
  OR7C1 WILD-TYPE 103 115
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      4    2
  OR7C1 WILD-TYPE  103  115
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR7C1 MUTATED                      3                             2
  OR7C1 WILD-TYPE                  125                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR7C1 MUTATED                       0                              0
  OR7C1 WILD-TYPE                    57                              8
D175V5, multiclass
                                clus
vv                               OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON ADENOCARCINOMA                       3             125
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  OR7C1 MUTATED     1   1   4   0
  OR7C1 WILD-TYPE   8  46 146  17
D175V6, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             4             146
  T4             0              17
                 vv
clus               N0  N1  N2
  OR7C1 MUTATED     4   1   1
  OR7C1 WILD-TYPE 130  43  45
D175V7, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  OR7C1 MUTATED     5   0   0
  OR7C1 WILD-TYPE 184  31   1
D175V8, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  M0              5             184
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  OR7C1 MUTATED    2  2   2  0
  OR7C1 WILD-TYPE 46 80  58 29
D175V9, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  I               2              46
  II              2              80
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  OR7C1 MUTATED     4   0   0   0
  OR7C1 WILD-TYPE 184   2  27   1
D175V10, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  R0             4             184
  R1             0               2
  R2             0              27
  RX             0               1
D175V11, continuous

Clustering(176) Variable = SPATA8 MUTATION ANALYSIS
D176V1, survival
                  sevent
clus2                0   1
  SPATA8 MUTATED     2   0
  SPATA8 WILD-TYPE 104  14
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              118 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               0               14 
$`SPATA8 MUTATED`
TCGA-AG-4001 TCGA-AG-A01W 
        1.02        70.03 

$`SPATA8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SPATA8 MUTATED SPATA8 WILD-TYPE 
            1.02             0.92 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
           70.03            72.07 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
          35.525           10.950 
[1] "1.0 - 70.0 (35.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" "SPATA8 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H       TCGA-AG-A00Y 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A01L       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D176V2, continuous
D176V3, binary
                  cls
clus                 0   1
  SPATA8 MUTATED     0   3
  SPATA8 WILD-TYPE 154  65
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      0    3
  SPATA8 WILD-TYPE  154   65
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON               0              154
  RECTUM              3               65
D176V4, binary
                  cls
clus                 0   1
  SPATA8 MUTATED     3   0
  SPATA8 WILD-TYPE 104 117
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      3    0
  SPATA8 WILD-TYPE  104  117
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  FEMALE              3              104
  MALE                0              117
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SPATA8 MUTATED                      0                             0
  SPATA8 WILD-TYPE                  128                            24
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SPATA8 MUTATED                       3                              0
  SPATA8 WILD-TYPE                    54                              8
D176V5, multiclass
                                clus
vv                               SPATA8 MUTATED SPATA8 WILD-TYPE
  COLON ADENOCARCINOMA                        0              128
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  SPATA8 MUTATED     0   0   3   0
  SPATA8 WILD-TYPE   9  47 147  17
D176V6, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              3              147
  T4              0               17
                  vv
clus                N0  N1  N2
  SPATA8 MUTATED     2   1   0
  SPATA8 WILD-TYPE 132  43  46
D176V7, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  N0              2              132
  N1              1               43
  N2              0               46
                  vv
clus                M0  M1 M1A
  SPATA8 MUTATED     3   0   0
  SPATA8 WILD-TYPE 186  31   1
D176V8, multiclass
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  M0               3              186
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  SPATA8 MUTATED    0  2   1  0
  SPATA8 WILD-TYPE 48 80  59 29
D176V9, multiclass
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  I                0               48
  II               2               80
  III              1               59
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  SPATA8 MUTATED     3   0   0   0
  SPATA8 WILD-TYPE 185   2  27   1
D176V10, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  R0              3              185
  R1              0                2
  R2              0               27
  RX              0                1
D176V11, continuous

Clustering(177) Variable = OR2M2 MUTATION ANALYSIS
D177V1, survival
                 sevent
clus2               0   1
  OR2M2 MUTATED     3   2
  OR2M2 WILD-TYPE 103  12
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              5             115 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              2              12 
$`OR2M2 MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02F TCGA-AY-4071 
        1.02         4.01        20.98        39.95         0.95 

$`OR2M2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       40.93        16.31        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR2M2 MUTATED OR2M2 WILD-TYPE 
           0.95            0.92 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
          39.95           72.07 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
           4.01           10.98 
[1] "0.9 - 40.0 (4.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
[1] "hr=" "3.2"
D177V2, continuous
D177V3, binary
                 cls
clus                0   1
  OR2M2 MUTATED     5   0
  OR2M2 WILD-TYPE 149  68
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    0
  OR2M2 WILD-TYPE  149   68
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON              5             149
  RECTUM             0              68
D177V4, binary
                 cls
clus                0   1
  OR2M2 MUTATED     5   1
  OR2M2 WILD-TYPE 102 116
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    1
  OR2M2 WILD-TYPE  102  116
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  FEMALE             5             102
  MALE               1             116
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR2M2 MUTATED                      2                             3
  OR2M2 WILD-TYPE                  126                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR2M2 MUTATED                       0                              0
  OR2M2 WILD-TYPE                    57                              8
D177V5, multiclass
                                clus
vv                               OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      0              57
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  OR2M2 MUTATED     1   0   3   2
  OR2M2 WILD-TYPE   8  47 147  15
D177V6, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  T1             1               8
  T2             0              47
  T3             3             147
  T4             2              15
                 vv
clus               N0  N1  N2
  OR2M2 MUTATED     4   1   1
  OR2M2 WILD-TYPE 130  43  45
D177V7, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  OR2M2 MUTATED     3   2   0
  OR2M2 WILD-TYPE 186  29   1
D177V8, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  M0              3             186
  M1              2              29
  M1A             0               1
                 vv
clus               I II III IV
  OR2M2 MUTATED    1  3   0  2
  OR2M2 WILD-TYPE 47 79  60 27
D177V9, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  I               1              47
  II              3              79
  III             0              60
  IV              2              27
                 vv
clus               R0  R1  R2  RX
  OR2M2 MUTATED     3   0   2   0
  OR2M2 WILD-TYPE 185   2  25   1
D177V10, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  R0             3             185
  R1             0               2
  R2             2              25
  RX             0               1
D177V11, continuous

Clustering(178) Variable = SORCS1 MUTATION ANALYSIS
D178V1, survival
                  sevent
clus2                0   1
  SORCS1 MUTATED     6   2
  SORCS1 WILD-TYPE 100  12
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               8              112 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               2               12 
$`SORCS1 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02J 
        1.02         0.99         1.02         4.01        20.98         5.03 
TCGA-AG-3599 TCGA-AG-4007 
        0.99         1.02 

$`SORCS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 
        1.02         1.02         2.01         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  SORCS1 MUTATED SORCS1 WILD-TYPE 
            0.99             0.92 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
           20.98            72.07 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
  "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
[1] "hr=" "4.8"
D178V2, continuous
D178V3, binary
                  cls
clus                 0   1
  SORCS1 MUTATED    11   4
  SORCS1 WILD-TYPE 143  64
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED     11    4
  SORCS1 WILD-TYPE  143   64
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON              11              143
  RECTUM              4               64
D178V4, binary
                  cls
clus                 0   1
  SORCS1 MUTATED     7   8
  SORCS1 WILD-TYPE 100 109
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      7    8
  SORCS1 WILD-TYPE  100  109
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  FEMALE              7              100
  MALE                8              109
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SORCS1 MUTATED                      9                             2
  SORCS1 WILD-TYPE                  119                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SORCS1 MUTATED                       3                              0
  SORCS1 WILD-TYPE                    54                              8
D178V5, multiclass
                                clus
vv                               SORCS1 MUTATED SORCS1 WILD-TYPE
  COLON ADENOCARCINOMA                        9              119
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       3               54
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  SORCS1 MUTATED     0   2   8   5
  SORCS1 WILD-TYPE   9  45 142  12
D178V6, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              8              142
  T4              5               12
                  vv
clus                N0  N1  N2
  SORCS1 MUTATED    11   3   1
  SORCS1 WILD-TYPE 123  41  45
D178V7, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  N0             11              123
  N1              3               41
  N2              1               45
                  vv
clus                M0  M1 M1A
  SORCS1 MUTATED    12   2   0
  SORCS1 WILD-TYPE 177  29   1
D178V8, multiclass
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  M0              12              177
  M1               2               29
  M1A              0                1
                  vv
clus                I II III IV
  SORCS1 MUTATED    1  8   3  2
  SORCS1 WILD-TYPE 47 74  57 27
D178V9, multiclass
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  I                1               47
  II               8               74
  III              3               57
  IV               2               27
                  vv
clus                R0  R1  R2  RX
  SORCS1 MUTATED    11   0   3   0
  SORCS1 WILD-TYPE 177   2  24   1
D178V10, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  R0             11              177
  R1              0                2
  R2              3               24
  RX              0                1
D178V11, continuous

Clustering(179) Variable = IL18R1 MUTATION ANALYSIS
D179V1, survival
                  sevent
clus2                0   1
  IL18R1 MUTATED     6   0
  IL18R1 WILD-TYPE 100  14
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               6              114 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               0               14 
$`IL18R1 MUTATED`
TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A02O TCGA-AG-3892 TCGA-AG-A002 
        0.99        18.02        20.98         0.92         1.02        20.94 

$`IL18R1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  IL18R1 MUTATED IL18R1 WILD-TYPE 
            0.92             0.92 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
           20.98            72.07 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
            9.52            10.95 
[1] "0.9 - 21.0 (9.5)"  "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D179V2, continuous
D179V3, binary
                  cls
clus                 0   1
  IL18R1 MUTATED     8   2
  IL18R1 WILD-TYPE 146  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      8    2
  IL18R1 WILD-TYPE  146   66
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON               8              146
  RECTUM              2               66
D179V4, binary
                  cls
clus                 0   1
  IL18R1 MUTATED     5   5
  IL18R1 WILD-TYPE 102 112
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      5    5
  IL18R1 WILD-TYPE  102  112
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  FEMALE              5              102
  MALE                5              112
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  IL18R1 MUTATED                      5                             3
  IL18R1 WILD-TYPE                  123                            21
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  IL18R1 MUTATED                       2                              0
  IL18R1 WILD-TYPE                    55                              8
D179V5, multiclass
                                clus
vv                               IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON ADENOCARCINOMA                        5              123
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  IL18R1 MUTATED     2   2   4   2
  IL18R1 WILD-TYPE   7  45 146  15
D179V6, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  T1              2                7
  T2              2               45
  T3              4              146
  T4              2               15
                  vv
clus                N0  N1  N2
  IL18R1 MUTATED     5   3   2
  IL18R1 WILD-TYPE 129  41  44
D179V7, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  N0              5              129
  N1              3               41
  N2              2               44
                  vv
clus                M0  M1 M1A
  IL18R1 MUTATED    10   0   0
  IL18R1 WILD-TYPE 179  31   1
D179V8, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  M0              10              179
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  IL18R1 MUTATED    3  2   5  0
  IL18R1 WILD-TYPE 45 80  55 29
D179V9, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  I                3               45
  II               2               80
  III              5               55
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  IL18R1 MUTATED     9   0   0   0
  IL18R1 WILD-TYPE 179   2  27   1
D179V10, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  R0              9              179
  R1              0                2
  R2              0               27
  RX              0                1
D179V11, continuous

Clustering(180) Variable = DPY19L1 MUTATION ANALYSIS
D180V1, survival
                   sevent
clus2                 0   1
  DPY19L1 MUTATED     3   1
  DPY19L1 WILD-TYPE 103  13
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                4               116 
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
                1                13 
$`DPY19L1 MUTATED`
TCGA-AA-3710 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A002 
        1.02         4.01        20.98        20.94 

$`DPY19L1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
        1.02        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
             1.02              0.92 
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
            20.98             72.07 
  DPY19L1 MUTATED DPY19L1 WILD-TYPE 
           12.475            10.950 
[1] "1.0 - 21.0 (12.5)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DPY19L1 WILD-TYPE"   "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "DPY19L1 MUTATED" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" "DPY19L1 WILD-TYPE" 
[1] "hr=" "2.3"
D180V2, continuous
D180V3, binary
                   cls
clus                  0   1
  DPY19L1 MUTATED     3   2
  DPY19L1 WILD-TYPE 151  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DPY19L1 MUTATED      3    2
  DPY19L1 WILD-TYPE  151   66
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  COLON                3               151
  RECTUM               2                66
D180V4, binary
                   cls
clus                  0   1
  DPY19L1 MUTATED     3   2
  DPY19L1 WILD-TYPE 104 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DPY19L1 MUTATED      3    2
  DPY19L1 WILD-TYPE  104  115
        clus
vv       DPY19L1 MUTATED DPY19L1 WILD-TYPE
  FEMALE               3               104
  MALE                 2               115
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DPY19L1 MUTATED                      2                             1
  DPY19L1 WILD-TYPE                  126                            23
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DPY19L1 MUTATED                       1                              0
  DPY19L1 WILD-TYPE                    56                              8
D180V5, multiclass
                                clus
vv                               DPY19L1 MUTATED DPY19L1 WILD-TYPE
  COLON ADENOCARCINOMA                         2               126
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  DPY19L1 MUTATED     0   1   2   2
  DPY19L1 WILD-TYPE   9  46 148  15
D180V6, multiclass
    clus
vv   DPY19L1 MUTATED DPY19L1 WILD-TYPE
  T1               0                 9
  T2               1                46
  T3               2               148
  T4               2                15
                   vv
clus                 N0  N1  N2
  DPY19L1 MUTATED     5   0   0
  DPY19L1 WILD-TYPE 129  44  46
D180V7, multiclass
    clus
vv   DPY19L1 MUTATED DPY19L1 WILD-TYPE
  N0               5               129
  N1               0                44
  N2               0                46
                   vv
clus                 M0  M1 M1A
  DPY19L1 MUTATED     5   0   0
  DPY19L1 WILD-TYPE 184  31   1
D180V8, multiclass
     clus
vv    DPY19L1 MUTATED DPY19L1 WILD-TYPE
  M0                5               184
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  DPY19L1 MUTATED    1  4   0  0
  DPY19L1 WILD-TYPE 47 78  60 29
D180V9, multiclass
     clus
vv    DPY19L1 MUTATED DPY19L1 WILD-TYPE
  I                 1                47
  II                4                78
  III               0                60
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  DPY19L1 MUTATED     4   0   0   0
  DPY19L1 WILD-TYPE 184   2  27   1
D180V10, multiclass
    clus
vv   DPY19L1 MUTATED DPY19L1 WILD-TYPE
  R0               4               184
  R1               0                 2
  R2               0                27
  RX               0                 1
D180V11, continuous

Clustering(181) Variable = C16ORF45 MUTATION ANALYSIS
D181V1, survival
                    sevent
clus2                  0   1
  C16ORF45 MUTATED     2   0
  C16ORF45 WILD-TYPE 104  14
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                118 
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 0                 14 
$`C16ORF45 MUTATED`
TCGA-AA-3941 TCGA-AG-A002 
        1.02        20.94 

$`C16ORF45 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
              1.02               0.92 
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
             20.94              72.07 
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
             10.98              10.95 
[1] "1.0 - 20.9 (11.0)" "0.9 - 72.1 (10.9)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"C16ORF45 WILD-TYPE"   "C16ORF45 MUTATED" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
[1] "Remove cluster labels:" "C16ORF45 MUTATED"      
clus
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3947 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3892 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3894         TCGA-AG-3999 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4007         TCGA-AG-4008 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A036 
"C16ORF45 WILD-TYPE" 
D181V2, continuous
D181V3, binary
                    cls
clus                   0   1
  C16ORF45 MUTATED     2   1
  C16ORF45 WILD-TYPE 152  67
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C16ORF45 MUTATED      2    1
  C16ORF45 WILD-TYPE  152   67
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  COLON                 2                152
  RECTUM                1                 67
D181V4, binary
                    cls
clus                   0   1
  C16ORF45 MUTATED     1   2
  C16ORF45 WILD-TYPE 106 115
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C16ORF45 MUTATED      1    2
  C16ORF45 WILD-TYPE  106  115
        clus
vv       C16ORF45 MUTATED C16ORF45 WILD-TYPE
  FEMALE                1                106
  MALE                  2                115
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  C16ORF45 MUTATED                      2                             0
  C16ORF45 WILD-TYPE                  126                            24
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  C16ORF45 MUTATED                       1                              0
  C16ORF45 WILD-TYPE                    56                              8
D181V5, multiclass
                                clus
vv                               C16ORF45 MUTATED C16ORF45 WILD-TYPE
  COLON ADENOCARCINOMA                          2                126
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  C16ORF45 MUTATED     0   1   1   1
  C16ORF45 WILD-TYPE   9  46 149  16
D181V6, multiclass
    clus
vv   C16ORF45 MUTATED C16ORF45 WILD-TYPE
  T1                0                  9
  T2                1                 46
  T3                1                149
  T4                1                 16
                    vv
clus                  N0  N1  N2
  C16ORF45 MUTATED     1   2   0
  C16ORF45 WILD-TYPE 133  42  46
D181V7, multiclass
    clus
vv   C16ORF45 MUTATED C16ORF45 WILD-TYPE
  N0                1                133
  N1                2                 42
  N2                0                 46
                    vv
clus                  M0  M1 M1A
  C16ORF45 MUTATED     2   0   1
  C16ORF45 WILD-TYPE 187  31   0
D181V8, multiclass
     clus
vv    C16ORF45 MUTATED C16ORF45 WILD-TYPE
  M0                 2                187
  M1                 0                 31
  M1A                1                  0
                    vv
clus                  I II III IV
  C16ORF45 MUTATED    1  0   1  1
  C16ORF45 WILD-TYPE 47 82  59 28
D181V9, multiclass
     clus
vv    C16ORF45 MUTATED C16ORF45 WILD-TYPE
  I                  1                 47
  II                 0                 82
  III                1                 59
  IV                 1                 28
                    vv
clus                  R0  R1  R2  RX
  C16ORF45 MUTATED     2   0   0   0
  C16ORF45 WILD-TYPE 186   2  27   1
D181V10, multiclass
[1] "Remove cluster labels:" "C16ORF45 MUTATED"      
clus
  C16ORF45 MUTATED C16ORF45 WILD-TYPE 
                 2                216 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3514         TCGA-AA-3517 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3518         TCGA-AA-3519         TCGA-AA-3520 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3521         TCGA-AA-3522         TCGA-AA-3524 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3525         TCGA-AA-3526         TCGA-AA-3527 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3529         TCGA-AA-3530         TCGA-AA-3531 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3532         TCGA-AA-3534         TCGA-AA-3538 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3542         TCGA-AA-3543         TCGA-AA-3544 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3548         TCGA-AA-3549         TCGA-AA-3552 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3553         TCGA-AA-3554         TCGA-AA-3555 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3556         TCGA-AA-3558         TCGA-AA-3560 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3561         TCGA-AA-3562         TCGA-AA-3664 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3666         TCGA-AA-3667         TCGA-AA-3672 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3673         TCGA-AA-3678         TCGA-AA-3679 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3680         TCGA-AA-3681         TCGA-AA-3684 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3685         TCGA-AA-3688         TCGA-AA-3692 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3693         TCGA-AA-3695         TCGA-AA-3696 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3710         TCGA-AA-3715         TCGA-AA-3811 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3812         TCGA-AA-3814         TCGA-AA-3818 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3819         TCGA-AA-3821         TCGA-AA-3831 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3833         TCGA-AA-3837         TCGA-AA-3842 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3844         TCGA-AA-3845         TCGA-AA-3846 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3850         TCGA-AA-3851 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3852         TCGA-AA-3854         TCGA-AA-3855 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3856         TCGA-AA-3858         TCGA-AA-3860 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3864         TCGA-AA-3866         TCGA-AA-3867 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3869         TCGA-AA-3870         TCGA-AA-3872 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3875         TCGA-AA-3877         TCGA-AA-3930 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3947         TCGA-AA-3949 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3952         TCGA-AA-3955         TCGA-AA-3956 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3971         TCGA-AA-3972         TCGA-AA-3973 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3976         TCGA-AA-3979 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3984         TCGA-AA-3986         TCGA-AA-3989 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-3994         TCGA-AA-A004         TCGA-AA-A00A 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A022         TCGA-AA-A024 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A029         TCGA-AA-A02F         TCGA-AA-A02H 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02J         TCGA-AA-A02O         TCGA-AA-A02W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AA-A02Y         TCGA-AA-A03F         TCGA-AA-A03J 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AY-4070         TCGA-AY-4071         TCGA-AF-2689 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-3400 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AF-3913         TCGA-AG-3574         TCGA-AG-3575 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3593 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3882 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3887         TCGA-AG-3890 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3896         TCGA-AG-3898         TCGA-AG-3901 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-3902         TCGA-AG-3909         TCGA-AG-3999 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4005         TCGA-AG-4007 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-4015         TCGA-AG-A008 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" "C16ORF45 WILD-TYPE" 
D181V11, continuous

Clustering(182) Variable = INHBA MUTATION ANALYSIS
D182V1, survival
                 sevent
clus2              0  1
  INHBA MUTATED    7  1
  INHBA WILD-TYPE 99 13
  INHBA MUTATED INHBA WILD-TYPE 
              8             112 
  INHBA MUTATED INHBA WILD-TYPE 
              1              13 
$`INHBA MUTATED`
TCGA-A6-3808 TCGA-AA-3949 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R 
        9.14         0.99        34.03         4.01        20.98        35.01 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`INHBA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  INHBA MUTATED INHBA WILD-TYPE 
           0.99            0.92 
  INHBA MUTATED INHBA WILD-TYPE 
          35.01           72.07 
  INHBA MUTATED INHBA WILD-TYPE 
          15.04           10.95 
[1] "1.0 - 35.0 (15.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
[1] "hr=" "1.1"
D182V2, continuous
D182V3, binary
                 cls
clus                0   1
  INHBA MUTATED     7   2
  INHBA WILD-TYPE 147  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      7    2
  INHBA WILD-TYPE  147   66
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  COLON              7             147
  RECTUM             2              66
D182V4, binary
                 cls
clus                0   1
  INHBA MUTATED     3   6
  INHBA WILD-TYPE 104 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      3    6
  INHBA WILD-TYPE  104  111
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             3             104
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  INHBA MUTATED                      2                             5
  INHBA WILD-TYPE                  126                            19
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  INHBA MUTATED                       2                              0
  INHBA WILD-TYPE                    55                              8
D182V5, multiclass
                                clus
vv                               INHBA MUTATED INHBA WILD-TYPE
  COLON ADENOCARCINOMA                       2             126
  COLON MUCINOUS ADENOCARCINOMA              5              19
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  INHBA MUTATED     1   1   5   2
  INHBA WILD-TYPE   8  46 145  15
D182V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             1               8
  T2             1              46
  T3             5             145
  T4             2              15
                 vv
clus               N0  N1  N2
  INHBA MUTATED     5   2   2
  INHBA WILD-TYPE 129  42  44
D182V7, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  N0             5             129
  N1             2              42
  N2             2              44
                 vv
clus               M0  M1 M1A
  INHBA MUTATED     9   0   0
  INHBA WILD-TYPE 180  31   1
D182V8, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  M0              9             180
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  INHBA MUTATED    2  3   4  0
  INHBA WILD-TYPE 46 79  56 29
D182V9, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  I               2              46
  II              3              79
  III             4              56
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  INHBA MUTATED     9   0   0   0
  INHBA WILD-TYPE 179   2  27   1
D182V10, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  R0             9             179
  R1             0               2
  R2             0              27
  RX             0               1
D182V11, continuous

Clustering(183) Variable = MIER3 MUTATION ANALYSIS
D183V1, survival
                 sevent
clus2              0  1
  MIER3 MUTATED    7  0
  MIER3 WILD-TYPE 99 14
  MIER3 MUTATED MIER3 WILD-TYPE 
              7             113 
  MIER3 MUTATED MIER3 WILD-TYPE 
              0              14 
$`MIER3 MUTATED`
TCGA-A6-2672 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A010 
       16.54         0.99         0.99         0.99         1.02        20.98 
TCGA-AG-A002 
       20.94 

$`MIER3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         8.09         1.02         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 
        0.95         0.99         0.92         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  MIER3 MUTATED MIER3 WILD-TYPE 
           0.99            0.92 
  MIER3 MUTATED MIER3 WILD-TYPE 
          20.98           72.07 
  MIER3 MUTATED MIER3 WILD-TYPE 
           1.02           10.98 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (11.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D183V2, continuous
D183V3, binary
                 cls
clus                0   1
  MIER3 MUTATED    10   1
  MIER3 WILD-TYPE 144  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED     10    1
  MIER3 WILD-TYPE  144   67
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  COLON             10             144
  RECTUM             1              67
D183V4, binary
                 cls
clus                0   1
  MIER3 MUTATED     6   5
  MIER3 WILD-TYPE 101 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED      6    5
  MIER3 WILD-TYPE  101  112
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  FEMALE             6             101
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  MIER3 MUTATED                      9                             1
  MIER3 WILD-TYPE                  119                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  MIER3 MUTATED                       1                              0
  MIER3 WILD-TYPE                    56                              8
D183V5, multiclass
                                clus
vv                               MIER3 MUTATED MIER3 WILD-TYPE
  COLON ADENOCARCINOMA                       9             119
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  MIER3 MUTATED     0   3   6   2
  MIER3 WILD-TYPE   9  44 144  15
D183V6, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             6             144
  T4             2              15
                 vv
clus               N0  N1  N2
  MIER3 MUTATED     9   2   0
  MIER3 WILD-TYPE 125  42  46
D183V7, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  N0             9             125
  N1             2              42
  N2             0              46
                 vv
clus               M0  M1 M1A
  MIER3 MUTATED    10   0   0
  MIER3 WILD-TYPE 179  31   1
D183V8, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  MIER3 MUTATED    2  6   2  0
  MIER3 WILD-TYPE 46 76  58 29
D183V9, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  I               2              46
  II              6              76
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  MIER3 MUTATED    10   0   0   0
  MIER3 WILD-TYPE 178   2  27   1
D183V10, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             0              27
  RX             0               1
D183V11, continuous

Clustering(184) Variable = ZNF585A MUTATION ANALYSIS
D184V1, survival
                   sevent
clus2                 0   1
  ZNF585A MUTATED     5   1
  ZNF585A WILD-TYPE 101  13
  ZNF585A MUTATED ZNF585A WILD-TYPE 
                6               114 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
                1                13 
$`ZNF585A MUTATED`
TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A002 
        0.99         1.02         4.01        20.98         1.02        20.94 

$`ZNF585A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  ZNF585A MUTATED ZNF585A WILD-TYPE 
             0.99              0.92 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
            20.98             72.07 
  ZNF585A MUTATED ZNF585A WILD-TYPE 
            2.515            11.490 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE"   "ZNF585A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"ZNF585A WILD-TYPE"   "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "ZNF585A MUTATED" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" "ZNF585A WILD-TYPE" 
[1] "hr=" "2.1"
D184V2, continuous
D184V3, binary
                   cls
clus                  0   1
  ZNF585A MUTATED     7   3
  ZNF585A WILD-TYPE 147  65
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED      7    3
  ZNF585A WILD-TYPE  147   65
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  COLON                7               147
  RECTUM               3                65
D184V4, binary
                   cls
clus                  0   1
  ZNF585A MUTATED     5   5
  ZNF585A WILD-TYPE 102 112
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZNF585A MUTATED      5    5
  ZNF585A WILD-TYPE  102  112
        clus
vv       ZNF585A MUTATED ZNF585A WILD-TYPE
  FEMALE               5               102
  MALE                 5               112
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZNF585A MUTATED                      5                             2
  ZNF585A WILD-TYPE                  123                            22
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZNF585A MUTATED                       2                              1
  ZNF585A WILD-TYPE                    55                              7
D184V5, multiclass
                                clus
vv                               ZNF585A MUTATED ZNF585A WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                2                22
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               1                 7
                   vv
clus                 T1  T2  T3  T4
  ZNF585A MUTATED     1   2   5   2
  ZNF585A WILD-TYPE   8  45 145  15
D184V6, multiclass
    clus
vv   ZNF585A MUTATED ZNF585A WILD-TYPE
  T1               1                 8
  T2               2                45
  T3               5               145
  T4               2                15
                   vv
clus                 N0  N1  N2
  ZNF585A MUTATED     8   1   1
  ZNF585A WILD-TYPE 126  43  45
D184V7, multiclass
    clus
vv   ZNF585A MUTATED ZNF585A WILD-TYPE
  N0               8               126
  N1               1                43
  N2               1                45
                   vv
clus                 M0  M1 M1A
  ZNF585A MUTATED     9   0   0
  ZNF585A WILD-TYPE 180  31   1
D184V8, multiclass
     clus
vv    ZNF585A MUTATED ZNF585A WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  ZNF585A MUTATED    2  5   2  0
  ZNF585A WILD-TYPE 46 77  58 29
D184V9, multiclass
     clus
vv    ZNF585A MUTATED ZNF585A WILD-TYPE
  I                 2                46
  II                5                77
  III               2                58
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  ZNF585A MUTATED     8   0   0   0
  ZNF585A WILD-TYPE 180   2  27   1
D184V10, multiclass
    clus
vv   ZNF585A MUTATED ZNF585A WILD-TYPE
  R0               8               180
  R1               0                 2
  R2               0                27
  RX               0                 1
D184V11, continuous

Clustering(185) Variable = TMPRSS13 MUTATION ANALYSIS
D185V1, survival
                    sevent
clus2                  0   1
  TMPRSS13 MUTATED     2   0
  TMPRSS13 WILD-TYPE 104  14
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 2                118 
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 0                 14 
$`TMPRSS13 MUTATED`
TCGA-AA-3715 TCGA-AG-3892 
        0.99         1.02 

$`TMPRSS13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
              0.99               0.92 
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
              1.02              72.07 
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
             1.005             11.490 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AY-4071         TCGA-AF-2689         TCGA-AF-2691 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2692         TCGA-AF-3400         TCGA-AF-3913 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3587         TCGA-AG-3599         TCGA-AG-3726 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3878         TCGA-AG-3887 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
  "TMPRSS13 MUTATED" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4007 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-A002         TCGA-AG-A008 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00C         TCGA-AG-A00H         TCGA-AG-A00Y 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A011         TCGA-AG-A014         TCGA-AG-A015 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A016         TCGA-AG-A01L         TCGA-AG-A01W 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01Y         TCGA-AG-A020         TCGA-AG-A025 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A026         TCGA-AG-A02G         TCGA-AG-A02N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02X         TCGA-AG-A032         TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
[1] "Remove cluster labels:" "TMPRSS13 MUTATED"      
clus
  TMPRSS13 MUTATED TMPRSS13 WILD-TYPE 
                 2                118 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3811         TCGA-AA-3818         TCGA-AA-3837 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3842         TCGA-AA-3844         TCGA-AA-3846 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3848         TCGA-AA-3854         TCGA-AA-3877 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3581 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3587 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3726         TCGA-AG-3727 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3887         TCGA-AG-3893 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3999         TCGA-AG-4001 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-A002 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A01W         TCGA-AG-A01Y         TCGA-AG-A020 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AG-A032 
"TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" "TMPRSS13 WILD-TYPE" 
        TCGA-AG-A036 
"TMPRSS13 WILD-TYPE" 
D185V2, continuous
D185V3, binary
                    cls
clus                   0   1
  TMPRSS13 MUTATED     3   1
  TMPRSS13 WILD-TYPE 151  67
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMPRSS13 MUTATED      3    1
  TMPRSS13 WILD-TYPE  151   67
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  COLON                 3                151
  RECTUM                1                 67
D185V4, binary
                    cls
clus                   0   1
  TMPRSS13 MUTATED     3   1
  TMPRSS13 WILD-TYPE 104 116
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMPRSS13 MUTATED      3    1
  TMPRSS13 WILD-TYPE  104  116
        clus
vv       TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  FEMALE                3                104
  MALE                  1                116
                    vv
clus                 COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TMPRSS13 MUTATED                      3                             0
  TMPRSS13 WILD-TYPE                  125                            24
                    vv
clus                 RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TMPRSS13 MUTATED                       1                              0
  TMPRSS13 WILD-TYPE                    56                              8
D185V5, multiclass
                                clus
vv                               TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  COLON ADENOCARCINOMA                          3                125
  COLON MUCINOUS ADENOCARCINOMA                 0                 24
  RECTAL ADENOCARCINOMA                         1                 56
  RECTAL MUCINOUS ADENOCARCINOMA                0                  8
                    vv
clus                  T1  T2  T3  T4
  TMPRSS13 MUTATED     1   0   3   0
  TMPRSS13 WILD-TYPE   8  47 147  17
D185V6, multiclass
    clus
vv   TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  T1                1                  8
  T2                0                 47
  T3                3                147
  T4                0                 17
                    vv
clus                  N0  N1  N2
  TMPRSS13 MUTATED     4   0   0
  TMPRSS13 WILD-TYPE 130  44  46
D185V7, multiclass
    clus
vv   TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  N0                4                130
  N1                0                 44
  N2                0                 46
                    vv
clus                  M0  M1 M1A
  TMPRSS13 MUTATED     4   0   0
  TMPRSS13 WILD-TYPE 185  31   1
D185V8, multiclass
     clus
vv    TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  M0                 4                185
  M1                 0                 31
  M1A                0                  1
                    vv
clus                  I II III IV
  TMPRSS13 MUTATED    1  3   0  0
  TMPRSS13 WILD-TYPE 47 79  60 29
D185V9, multiclass
     clus
vv    TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  I                  1                 47
  II                 3                 79
  III                0                 60
  IV                 0                 29
                    vv
clus                  R0  R1  R2  RX
  TMPRSS13 MUTATED     4   0   0   0
  TMPRSS13 WILD-TYPE 184   2  27   1
D185V10, multiclass
    clus
vv   TMPRSS13 MUTATED TMPRSS13 WILD-TYPE
  R0                4                184
  R1                0                  2
  R2                0                 27
  RX                0                  1
D185V11, continuous

Clustering(186) Variable = FSTL5 MUTATION ANALYSIS
D186V1, survival
                 sevent
clus2              0  1
  FSTL5 MUTATED    7  0
  FSTL5 WILD-TYPE 99 14
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              7             113 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
              0              14 
$`FSTL5 MUTATED`
TCGA-A6-2672 TCGA-AA-3846 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A010 TCGA-AG-4001 
       16.54         0.99         0.99        30.02        20.98         1.02 
TCGA-AG-A002 
       20.94 

$`FSTL5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        1.02         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        0.99         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 
       12.00        70.03        63.98        10.98        49.94         1.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  FSTL5 MUTATED FSTL5 WILD-TYPE 
           0.99            0.92 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          30.02           72.07 
  FSTL5 MUTATED FSTL5 WILD-TYPE 
          16.54           10.92 
[1] "1.0 - 30.0 (16.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"FSTL5 WILD-TYPE"   "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "FSTL5 MUTATED" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" "FSTL5 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D186V2, continuous
D186V3, binary
                 cls
clus                0   1
  FSTL5 MUTATED     8   3
  FSTL5 WILD-TYPE 146  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      8    3
  FSTL5 WILD-TYPE  146   65
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D186V4, binary
                 cls
clus                0   1
  FSTL5 MUTATED     8   3
  FSTL5 WILD-TYPE  99 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FSTL5 MUTATED      8    3
  FSTL5 WILD-TYPE   99  114
        clus
vv       FSTL5 MUTATED FSTL5 WILD-TYPE
  FEMALE             8              99
  MALE               3             114
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FSTL5 MUTATED                      6                             2
  FSTL5 WILD-TYPE                  122                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FSTL5 MUTATED                       3                              0
  FSTL5 WILD-TYPE                    54                              8
D186V5, multiclass
                                clus
vv                               FSTL5 MUTATED FSTL5 WILD-TYPE
  COLON ADENOCARCINOMA                       6             122
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  FSTL5 MUTATED     1   1   6   3
  FSTL5 WILD-TYPE   8  46 144  14
D186V6, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  T1             1               8
  T2             1              46
  T3             6             144
  T4             3              14
                 vv
clus               N0  N1  N2
  FSTL5 MUTATED     8   2   1
  FSTL5 WILD-TYPE 126  42  45
D186V7, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  FSTL5 MUTATED    10   1   0
  FSTL5 WILD-TYPE 179  30   1
D186V8, multiclass
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  M0             10             179
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  FSTL5 MUTATED    2  6   2  1
  FSTL5 WILD-TYPE 46 76  58 28
D186V9, multiclass
     clus
vv    FSTL5 MUTATED FSTL5 WILD-TYPE
  I               2              46
  II              6              76
  III             2              58
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  FSTL5 MUTATED    10   0   1   0
  FSTL5 WILD-TYPE 178   2  26   1
D186V10, multiclass
    clus
vv   FSTL5 MUTATED FSTL5 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             1              26
  RX             0               1
D186V11, continuous

Clustering(187) Variable = DOK5 MUTATION ANALYSIS
D187V1, survival
                sevent
clus2              0   1
  DOK5 MUTATED     4   0
  DOK5 WILD-TYPE 102  14
  DOK5 MUTATED DOK5 WILD-TYPE 
             4            116 
  DOK5 MUTATED DOK5 WILD-TYPE 
             0             14 
$`DOK5 MUTATED`
TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3966 TCGA-AG-3583 
        0.99         0.99         1.02         2.01 

$`DOK5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3587 
       13.55        12.72        10.39         1.02         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  DOK5 MUTATED DOK5 WILD-TYPE 
          0.99           0.92 
  DOK5 MUTATED DOK5 WILD-TYPE 
          2.01          72.07 
  DOK5 MUTATED DOK5 WILD-TYPE 
         1.005         12.000 
[1] "1.0 - 2.0 (1.0)"   "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE"   "DOK5 MUTATED" "DOK5 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" "DOK5 WILD-TYPE" 
[1] "hr="     "9300000"
D187V2, continuous
D187V3, binary
                cls
clus               0   1
  DOK5 MUTATED     4   2
  DOK5 WILD-TYPE 150  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      4    2
  DOK5 WILD-TYPE  150   66
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  COLON             4            150
  RECTUM            2             66
D187V4, binary
                cls
clus               0   1
  DOK5 MUTATED     5   1
  DOK5 WILD-TYPE 102 116
[1] "tbl2"
                cls
clus             [,1] [,2]
  DOK5 MUTATED      5    1
  DOK5 WILD-TYPE  102  116
        clus
vv       DOK5 MUTATED DOK5 WILD-TYPE
  FEMALE            5            102
  MALE              1            116
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DOK5 MUTATED                      2                             2
  DOK5 WILD-TYPE                  126                            22
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DOK5 MUTATED                       1                              1
  DOK5 WILD-TYPE                    56                              7
D187V5, multiclass
                                clus
vv                               DOK5 MUTATED DOK5 WILD-TYPE
  COLON ADENOCARCINOMA                      2            126
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     1             56
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  DOK5 MUTATED     0   1   5   0
  DOK5 WILD-TYPE   9  46 145  17
D187V6, multiclass
    clus
vv   DOK5 MUTATED DOK5 WILD-TYPE
  T1            0              9
  T2            1             46
  T3            5            145
  T4            0             17
                vv
clus              N0  N1  N2
  DOK5 MUTATED     4   0   2
  DOK5 WILD-TYPE 130  44  44
D187V7, multiclass
    clus
vv   DOK5 MUTATED DOK5 WILD-TYPE
  N0            4            130
  N1            0             44
  N2            2             44
                vv
clus              M0  M1 M1A
  DOK5 MUTATED     5   1   0
  DOK5 WILD-TYPE 184  30   1
D187V8, multiclass
     clus
vv    DOK5 MUTATED DOK5 WILD-TYPE
  M0             5            184
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  DOK5 MUTATED    1  3   1  1
  DOK5 WILD-TYPE 47 79  59 28
D187V9, multiclass
     clus
vv    DOK5 MUTATED DOK5 WILD-TYPE
  I              1             47
  II             3             79
  III            1             59
  IV             1             28
                vv
clus              R0  R1  R2  RX
  DOK5 MUTATED     4   0   1   0
  DOK5 WILD-TYPE 184   2  26   1
D187V10, multiclass
    clus
vv   DOK5 MUTATED DOK5 WILD-TYPE
  R0            4            184
  R1            0              2
  R2            1             26
  RX            0              1
D187V11, continuous

Clustering(188) Variable = ZNF99 MUTATION ANALYSIS
D188V1, survival
                 sevent
clus2              0  1
  ZNF99 MUTATED    7  2
  ZNF99 WILD-TYPE 99 12
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              9             111 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
              2              12 
$`ZNF99 MUTATED`
TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F 
        0.99         0.99         1.02         4.01        20.98        18.02 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-A002 
        1.02         0.99        20.94 

$`ZNF99 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        39.95        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.95         0.99         0.92         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02         1.02        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  ZNF99 MUTATED ZNF99 WILD-TYPE 
           0.99            0.92 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
          20.98           72.07 
  ZNF99 MUTATED ZNF99 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE"   "ZNF99 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ZNF99 WILD-TYPE"   "ZNF99 MUTATED"   "ZNF99 MUTATED" "ZNF99 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "ZNF99 MUTATED" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" "ZNF99 WILD-TYPE" 
[1] "hr=" "3.2"
D188V2, continuous
D188V3, binary
                 cls
clus                0   1
  ZNF99 MUTATED     8   3
  ZNF99 WILD-TYPE 146  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED      8    3
  ZNF99 WILD-TYPE  146   65
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  COLON              8             146
  RECTUM             3              65
D188V4, binary
                 cls
clus                0   1
  ZNF99 MUTATED     5   6
  ZNF99 WILD-TYPE 102 111
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF99 MUTATED      5    6
  ZNF99 WILD-TYPE  102  111
        clus
vv       ZNF99 MUTATED ZNF99 WILD-TYPE
  FEMALE             5             102
  MALE               6             111
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZNF99 MUTATED                      5                             3
  ZNF99 WILD-TYPE                  123                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZNF99 MUTATED                       3                              0
  ZNF99 WILD-TYPE                    54                              8
D188V5, multiclass
                                clus
vv                               ZNF99 MUTATED ZNF99 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ZNF99 MUTATED     1   2   6   2
  ZNF99 WILD-TYPE   8  45 144  15
D188V6, multiclass
    clus
vv   ZNF99 MUTATED ZNF99 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             6             144
  T4             2              15
                 vv
clus               N0  N1  N2
  ZNF99 MUTATED     8   2   1
  ZNF99 WILD-TYPE 126  42  45
D188V7, multiclass
    clus
vv   ZNF99 MUTATED ZNF99 WILD-TYPE
  N0             8             126
  N1             2              42
  N2             1              45
                 vv
clus               M0  M1 M1A
  ZNF99 MUTATED    10   0   0
  ZNF99 WILD-TYPE 179  31   1
D188V8, multiclass
     clus
vv    ZNF99 MUTATED ZNF99 WILD-TYPE
  M0             10             179
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  ZNF99 MUTATED    2  5   3  0
  ZNF99 WILD-TYPE 46 77  57 29
D188V9, multiclass
     clus
vv    ZNF99 MUTATED ZNF99 WILD-TYPE
  I               2              46
  II              5              77
  III             3              57
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  ZNF99 MUTATED    10   0   0   0
  ZNF99 WILD-TYPE 178   2  27   1
D188V10, multiclass
    clus
vv   ZNF99 MUTATED ZNF99 WILD-TYPE
  R0            10             178
  R1             0               2
  R2             0              27
  RX             0               1
D188V11, continuous

Clustering(189) Variable = GML MUTATION ANALYSIS
D189V1, survival
               sevent
clus2             0   1
  GML MUTATED     4   1
  GML WILD-TYPE 102  13
  GML MUTATED GML WILD-TYPE 
            5           115 
  GML MUTATED GML WILD-TYPE 
            1            13 
$`GML MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AG-A002 
        1.02         0.99         0.99         1.02        20.94 

$`GML WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  GML MUTATED GML WILD-TYPE 
         0.99          0.92 
  GML MUTATED GML WILD-TYPE 
        20.94         72.07 
  GML MUTATED GML WILD-TYPE 
         1.02         12.00 
[1] "1.0 - 20.9 (1.0)"  "0.9 - 72.1 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
[1] "hr=" "4"  
D189V2, continuous
D189V3, binary
               cls
clus              0   1
  GML MUTATED     5   1
  GML WILD-TYPE 149  67
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      5    1
  GML WILD-TYPE  149   67
        clus
vv       GML MUTATED GML WILD-TYPE
  COLON            5           149
  RECTUM           1            67
D189V4, binary
               cls
clus              0   1
  GML MUTATED     1   5
  GML WILD-TYPE 106 112
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      1    5
  GML WILD-TYPE  106  112
        clus
vv       GML MUTATED GML WILD-TYPE
  FEMALE           1           106
  MALE             5           112
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  GML MUTATED                      4                             1
  GML WILD-TYPE                  124                            23
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  GML MUTATED                       1                              0
  GML WILD-TYPE                    56                              8
D189V5, multiclass
                                clus
vv                               GML MUTATED GML WILD-TYPE
  COLON ADENOCARCINOMA                     4           124
  COLON MUCINOUS ADENOCARCINOMA            1            23
  RECTAL ADENOCARCINOMA                    1            56
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
               vv
clus             T1  T2  T3  T4
  GML MUTATED     0   2   4   0
  GML WILD-TYPE   9  45 146  17
D189V6, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  T1           0             9
  T2           2            45
  T3           4           146
  T4           0            17
               vv
clus             N0  N1  N2
  GML MUTATED     3   2   1
  GML WILD-TYPE 131  42  45
D189V7, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  N0           3           131
  N1           2            42
  N2           1            45
               vv
clus             M0  M1 M1A
  GML MUTATED     4   1   0
  GML WILD-TYPE 185  30   1
D189V8, multiclass
     clus
vv    GML MUTATED GML WILD-TYPE
  M0            4           185
  M1            1            30
  M1A           0             1
               vv
clus             I II III IV
  GML MUTATED    1  1   2  1
  GML WILD-TYPE 47 81  58 28
D189V9, multiclass
     clus
vv    GML MUTATED GML WILD-TYPE
  I             1            47
  II            1            81
  III           2            58
  IV            1            28
               vv
clus             R0  R1  R2  RX
  GML MUTATED     4   0   1   0
  GML WILD-TYPE 184   2  26   1
D189V10, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  R0           4           184
  R1           0             2
  R2           1            26
  RX           0             1
D189V11, continuous

Clustering(190) Variable = B2M MUTATION ANALYSIS
D190V1, survival
               sevent
clus2             0   1
  B2M MUTATED     4   0
  B2M WILD-TYPE 102  14
  B2M MUTATED B2M WILD-TYPE 
            4           116 
  B2M MUTATED B2M WILD-TYPE 
            0            14 
$`B2M MUTATED`
TCGA-A6-2672 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-A02N 
       16.54        20.98         1.02        61.94 

$`B2M WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        0.92         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        38.93        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  B2M MUTATED B2M WILD-TYPE 
         1.02          0.92 
  B2M MUTATED B2M WILD-TYPE 
        61.94         72.07 
  B2M MUTATED B2M WILD-TYPE 
        18.76         10.77 
[1] "1.0 - 61.9 (18.8)" "0.9 - 72.1 (10.8)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071    TCGA-AF-2689 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AF-2691    TCGA-AF-2692    TCGA-AF-3400    TCGA-AF-3913    TCGA-AG-3581 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3582    TCGA-AG-3583    TCGA-AG-3587    TCGA-AG-3599    TCGA-AG-3726 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-3727    TCGA-AG-3878    TCGA-AG-3887    TCGA-AG-3892    TCGA-AG-3893 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" 
   TCGA-AG-3894    TCGA-AG-3999    TCGA-AG-4001    TCGA-AG-4007    TCGA-AG-4008 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A002    TCGA-AG-A008    TCGA-AG-A00C    TCGA-AG-A00H    TCGA-AG-A00Y 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A011    TCGA-AG-A014    TCGA-AG-A015    TCGA-AG-A016    TCGA-AG-A01L 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A01W    TCGA-AG-A01Y    TCGA-AG-A020    TCGA-AG-A025    TCGA-AG-A026 
"B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
   TCGA-AG-A02G    TCGA-AG-A02N    TCGA-AG-A02X    TCGA-AG-A032    TCGA-AG-A036 
"B2M WILD-TYPE"   "B2M MUTATED" "B2M WILD-TYPE" "B2M WILD-TYPE" "B2M WILD-TYPE" 
[1] "hr="     "2.7e+07"
D190V2, continuous
D190V3, binary
               cls
clus              0   1
  B2M MUTATED     3   2
  B2M WILD-TYPE 151  66
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      3    2
  B2M WILD-TYPE  151   66
        clus
vv       B2M MUTATED B2M WILD-TYPE
  COLON            3           151
  RECTUM           2            66
D190V4, binary
               cls
clus              0   1
  B2M MUTATED     4   1
  B2M WILD-TYPE 103 116
[1] "tbl2"
               cls
clus            [,1] [,2]
  B2M MUTATED      4    1
  B2M WILD-TYPE  103  116
        clus
vv       B2M MUTATED B2M WILD-TYPE
  FEMALE           4           103
  MALE             1           116
               vv
clus            COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  B2M MUTATED                      2                             0
  B2M WILD-TYPE                  126                            24
               vv
clus            RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  B2M MUTATED                       2                              0
  B2M WILD-TYPE                    55                              8
D190V5, multiclass
                                clus
vv                               B2M MUTATED B2M WILD-TYPE
  COLON ADENOCARCINOMA                     2           126
  COLON MUCINOUS ADENOCARCINOMA            0            24
  RECTAL ADENOCARCINOMA                    2            55
  RECTAL MUCINOUS ADENOCARCINOMA           0             8
               vv
clus             T1  T2  T3  T4
  B2M MUTATED     1   0   3   1
  B2M WILD-TYPE   8  47 147  16
D190V6, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  T1           1             8
  T2           0            47
  T3           3           147
  T4           1            16
               vv
clus             N0  N1  N2
  B2M MUTATED     4   1   0
  B2M WILD-TYPE 130  43  46
D190V7, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  N0           4           130
  N1           1            43
  N2           0            46
               vv
clus             M0  M1 M1A
  B2M MUTATED     5   0   0
  B2M WILD-TYPE 184  31   1
D190V8, multiclass
     clus
vv    B2M MUTATED B2M WILD-TYPE
  M0            5           184
  M1            0            31
  M1A           0             1
               vv
clus             I II III IV
  B2M MUTATED    1  3   1  0
  B2M WILD-TYPE 47 79  59 29
D190V9, multiclass
     clus
vv    B2M MUTATED B2M WILD-TYPE
  I             1            47
  II            3            79
  III           1            59
  IV            0            29
               vv
clus             R0  R1  R2  RX
  B2M MUTATED     5   0   0   0
  B2M WILD-TYPE 183   2  27   1
D190V10, multiclass
    clus
vv   B2M MUTATED B2M WILD-TYPE
  R0           5           183
  R1           0             2
  R2           0            27
  RX           0             1
D190V11, continuous

Clustering(191) Variable = PPP2R2B MUTATION ANALYSIS
D191V1, survival
                   sevent
clus2                 0   1
  PPP2R2B MUTATED     2   0
  PPP2R2B WILD-TYPE 104  14
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                2               118 
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                0                14 
$`PPP2R2B MUTATED`
TCGA-AA-3877 TCGA-AG-3892 
        0.99         1.02 

$`PPP2R2B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 
        0.99         0.92         0.99         0.99         1.02         1.02 
TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02        20.94        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
             0.99              0.92 
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
             1.02             72.07 
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
            1.005            11.490 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 72.1 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"PPP2R2B WILD-TYPE"   "PPP2R2B MUTATED" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
[1] "Remove cluster labels:" "PPP2R2B MUTATED"       
clus
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                2               118 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3939 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3952 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977        TCGA-AA-3986 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689        TCGA-AF-2691 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3581 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587        TCGA-AG-3599 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3887 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3893        TCGA-AG-3894        TCGA-AG-3999        TCGA-AG-4001 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-A002        TCGA-AG-A008 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01L 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A025 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02N        TCGA-AG-A02X 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
D191V2, continuous
D191V3, binary
                   cls
clus                  0   1
  PPP2R2B MUTATED     1   2
  PPP2R2B WILD-TYPE 153  66
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP2R2B MUTATED      1    2
  PPP2R2B WILD-TYPE  153   66
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  COLON                1               153
  RECTUM               2                66
D191V4, binary
                   cls
clus                  0   1
  PPP2R2B MUTATED     3   0
  PPP2R2B WILD-TYPE 104 117
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PPP2R2B MUTATED      3    0
  PPP2R2B WILD-TYPE  104  117
        clus
vv       PPP2R2B MUTATED PPP2R2B WILD-TYPE
  FEMALE               3               104
  MALE                 0               117
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PPP2R2B MUTATED                      0                             1
  PPP2R2B WILD-TYPE                  128                            23
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PPP2R2B MUTATED                       2                              0
  PPP2R2B WILD-TYPE                    55                              8
D191V5, multiclass
                                clus
vv                               PPP2R2B MUTATED PPP2R2B WILD-TYPE
  COLON ADENOCARCINOMA                         0               128
  COLON MUCINOUS ADENOCARCINOMA                1                23
  RECTAL ADENOCARCINOMA                        2                55
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  PPP2R2B MUTATED     2   0   1   0
  PPP2R2B WILD-TYPE   7  47 149  17
D191V6, multiclass
    clus
vv   PPP2R2B MUTATED PPP2R2B WILD-TYPE
  T1               2                 7
  T2               0                47
  T3               1               149
  T4               0                17
                   vv
clus                 N0  N1  N2
  PPP2R2B MUTATED     3   0   0
  PPP2R2B WILD-TYPE 131  44  46
D191V7, multiclass
    clus
vv   PPP2R2B MUTATED PPP2R2B WILD-TYPE
  N0               3               131
  N1               0                44
  N2               0                46
                   vv
clus                 M0  M1 M1A
  PPP2R2B MUTATED     3   0   0
  PPP2R2B WILD-TYPE 186  31   1
D191V8, multiclass
     clus
vv    PPP2R2B MUTATED PPP2R2B WILD-TYPE
  M0                3               186
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  PPP2R2B MUTATED    2  1   0  0
  PPP2R2B WILD-TYPE 46 81  60 29
D191V9, multiclass
     clus
vv    PPP2R2B MUTATED PPP2R2B WILD-TYPE
  I                 2                46
  II                1                81
  III               0                60
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  PPP2R2B MUTATED     3   0   0   0
  PPP2R2B WILD-TYPE 185   2  27   1
D191V10, multiclass
    clus
vv   PPP2R2B MUTATED PPP2R2B WILD-TYPE
  R0               3               185
  R1               0                 2
  R2               0                27
  RX               0                 1
D191V11, continuous
[1] "Remove cluster labels:" "PPP2R2B MUTATED"       
clus
  PPP2R2B MUTATED PPP2R2B WILD-TYPE 
                2               220 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3514        TCGA-AA-3516 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3517        TCGA-AA-3518        TCGA-AA-3519        TCGA-AA-3520 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3521        TCGA-AA-3522        TCGA-AA-3524        TCGA-AA-3525 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3526        TCGA-AA-3527        TCGA-AA-3529        TCGA-AA-3530 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3531        TCGA-AA-3532        TCGA-AA-3534        TCGA-AA-3538 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3542        TCGA-AA-3543        TCGA-AA-3544        TCGA-AA-3548 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3549        TCGA-AA-3552        TCGA-AA-3553        TCGA-AA-3554 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3556        TCGA-AA-3558        TCGA-AA-3560 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3562        TCGA-AA-3664        TCGA-AA-3666        TCGA-AA-3667 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3672        TCGA-AA-3673        TCGA-AA-3678        TCGA-AA-3679 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3680        TCGA-AA-3681        TCGA-AA-3684        TCGA-AA-3685 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3688        TCGA-AA-3692        TCGA-AA-3693        TCGA-AA-3695 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3696        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3812        TCGA-AA-3814        TCGA-AA-3818        TCGA-AA-3819 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3821        TCGA-AA-3831        TCGA-AA-3833        TCGA-AA-3837 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3845        TCGA-AA-3846 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3850        TCGA-AA-3851        TCGA-AA-3852 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3854        TCGA-AA-3855        TCGA-AA-3856        TCGA-AA-3858 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3860        TCGA-AA-3864        TCGA-AA-3866        TCGA-AA-3867 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3869        TCGA-AA-3870        TCGA-AA-3872        TCGA-AA-3875 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3930        TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3949        TCGA-AA-3952        TCGA-AA-3955        TCGA-AA-3956 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3971        TCGA-AA-3972        TCGA-AA-3973 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3975        TCGA-AA-3976        TCGA-AA-3977        TCGA-AA-3979 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3980        TCGA-AA-3982        TCGA-AA-3984        TCGA-AA-3986 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-3989        TCGA-AA-3994        TCGA-AA-A004        TCGA-AA-A00A 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00D        TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00K        TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00Q        TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A00Z        TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01P        TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A022        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O        TCGA-AA-A02W 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AY-4070 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AY-4071        TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AF-3400        TCGA-AF-3913        TCGA-AG-3575        TCGA-AG-3578 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3878        TCGA-AG-3881        TCGA-AG-3882 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3883        TCGA-AG-3887        TCGA-AG-3890        TCGA-AG-3893 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3894        TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-3902        TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-4005        TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" "PPP2R2B WILD-TYPE" 

Clustering(192) Variable = LRTM1 MUTATION ANALYSIS
D192V1, survival
                 sevent
clus2               0   1
  LRTM1 MUTATED     5   1
  LRTM1 WILD-TYPE 101  13
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              6             114 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
              1              13 
$`LRTM1 MUTATED`
TCGA-AA-3811 TCGA-AA-A00A TCGA-AA-A00L TCGA-AA-A00N TCGA-AG-3892 TCGA-AG-A002 
        0.99        18.02        17.00         4.01         1.02        20.94 

$`LRTM1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  LRTM1 MUTATED LRTM1 WILD-TYPE 
           0.99            0.92 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
          20.94           72.07 
  LRTM1 MUTATED LRTM1 WILD-TYPE 
         10.505          10.950 
[1] "1.0 - 20.9 (10.5)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "LRTM1 MUTATED"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LRTM1 WILD-TYPE"   "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LRTM1 MUTATED" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" "LRTM1 WILD-TYPE" 
[1] "hr=" "1.7"
D192V2, continuous
D192V3, binary
                 cls
clus                0   1
  LRTM1 MUTATED     5   2
  LRTM1 WILD-TYPE 149  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      5    2
  LRTM1 WILD-TYPE  149   66
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  COLON              5             149
  RECTUM             2              66
D192V4, binary
                 cls
clus                0   1
  LRTM1 MUTATED     2   5
  LRTM1 WILD-TYPE 105 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRTM1 MUTATED      2    5
  LRTM1 WILD-TYPE  105  112
        clus
vv       LRTM1 MUTATED LRTM1 WILD-TYPE
  FEMALE             2             105
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LRTM1 MUTATED                      4                             1
  LRTM1 WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LRTM1 MUTATED                       2                              0
  LRTM1 WILD-TYPE                    55                              8
D192V5, multiclass
                                clus
vv                               LRTM1 MUTATED LRTM1 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  LRTM1 MUTATED     1   2   3   1
  LRTM1 WILD-TYPE   8  45 147  16
D192V6, multiclass
    clus
vv   LRTM1 MUTATED LRTM1 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             3             147
  T4             1              16
                 vv
clus               N0  N1  N2
  LRTM1 MUTATED     5   1   1
  LRTM1 WILD-TYPE 129  43  45
D192V7, multiclass
    clus
vv   LRTM1 MUTATED LRTM1 WILD-TYPE
  N0             5             129
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  LRTM1 MUTATED     7   0   0
  LRTM1 WILD-TYPE 182  31   1
D192V8, multiclass
     clus
vv    LRTM1 MUTATED LRTM1 WILD-TYPE
  M0              7             182
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  LRTM1 MUTATED    2  3   2  0
  LRTM1 WILD-TYPE 46 79  58 29
D192V9, multiclass
     clus
vv    LRTM1 MUTATED LRTM1 WILD-TYPE
  I               2              46
  II              3              79
  III             2              58
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  LRTM1 MUTATED     7   0   0   0
  LRTM1 WILD-TYPE 181   2  27   1
D192V10, multiclass
    clus
vv   LRTM1 MUTATED LRTM1 WILD-TYPE
  R0             7             181
  R1             0               2
  R2             0              27
  RX             0               1
D192V11, continuous

Clustering(193) Variable = OR10G9 MUTATION ANALYSIS
D193V1, survival
                  sevent
clus2                0   1
  OR10G9 MUTATED     4   1
  OR10G9 WILD-TYPE 102  13
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               5              115 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               1               13 
$`OR10G9 MUTATED`
TCGA-AA-3837 TCGA-AA-3947 TCGA-AA-A017 TCGA-AA-A03F TCGA-AG-3892 
        1.02         0.99        15.02        18.02         1.02 

$`OR10G9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        20.98         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  OR10G9 MUTATED OR10G9 WILD-TYPE 
            0.99             0.92 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
           18.02            72.07 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
            1.02            10.98 
[1] "1.0 - 18.0 (1.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
[1] "hr=" "2.9"
D193V2, continuous
D193V3, binary
                  cls
clus                 0   1
  OR10G9 MUTATED     5   1
  OR10G9 WILD-TYPE 149  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      5    1
  OR10G9 WILD-TYPE  149   67
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  COLON               5              149
  RECTUM              1               67
D193V4, binary
                  cls
clus                 0   1
  OR10G9 MUTATED     5   1
  OR10G9 WILD-TYPE 102 116
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      5    1
  OR10G9 WILD-TYPE  102  116
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  FEMALE              5              102
  MALE                1              116
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  OR10G9 MUTATED                      1                             4
  OR10G9 WILD-TYPE                  127                            20
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  OR10G9 MUTATED                       1                              0
  OR10G9 WILD-TYPE                    56                              8
D193V5, multiclass
                                clus
vv                               OR10G9 MUTATED OR10G9 WILD-TYPE
  COLON ADENOCARCINOMA                        1              127
  COLON MUCINOUS ADENOCARCINOMA               4               20
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  OR10G9 MUTATED     1   1   3   1
  OR10G9 WILD-TYPE   8  46 147  16
D193V6, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  T1              1                8
  T2              1               46
  T3              3              147
  T4              1               16
                  vv
clus                N0  N1  N2
  OR10G9 MUTATED     5   0   1
  OR10G9 WILD-TYPE 129  44  45
D193V7, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  N0              5              129
  N1              0               44
  N2              1               45
                  vv
clus                M0  M1 M1A
  OR10G9 MUTATED     6   0   0
  OR10G9 WILD-TYPE 183  31   1
D193V8, multiclass
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  M0               6              183
  M1               0               31
  M1A              0                1
                  vv
clus                I II III IV
  OR10G9 MUTATED    2  3   1  0
  OR10G9 WILD-TYPE 46 79  59 29
D193V9, multiclass
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  I                2               46
  II               3               79
  III              1               59
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  OR10G9 MUTATED     6   0   0   0
  OR10G9 WILD-TYPE 182   2  27   1
D193V10, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  R0              6              182
  R1              0                2
  R2              0               27
  RX              0                1
D193V11, continuous

Clustering(194) Variable = ERBB3 MUTATION ANALYSIS
D194V1, survival
                 sevent
clus2               0   1
  ERBB3 MUTATED     6   0
  ERBB3 WILD-TYPE 100  14
  ERBB3 MUTATED ERBB3 WILD-TYPE 
              6             114 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
              0              14 
$`ERBB3 MUTATED`
TCGA-AA-3715 TCGA-AA-A00A TCGA-AA-A00R TCGA-AA-A010 TCGA-AG-3726 TCGA-AG-A02N 
        0.99        18.02         0.99        20.98         1.02        61.94 

$`ERBB3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       17.00         4.01        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 
        0.99         0.95         0.99         0.92         1.02         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        0.99         1.02         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       49.94         1.94        38.93        40.96        38.01        72.07 

  ERBB3 MUTATED ERBB3 WILD-TYPE 
           0.99            0.92 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
          61.94           72.07 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
           9.52           10.95 
[1] "1.0 - 61.9 (9.5)"  "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"ERBB3 WILD-TYPE"   "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
  "ERBB3 MUTATED" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" "ERBB3 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D194V2, continuous
D194V3, binary
                 cls
clus                0   1
  ERBB3 MUTATED    11   3
  ERBB3 WILD-TYPE 143  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED     11    3
  ERBB3 WILD-TYPE  143   65
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  COLON             11             143
  RECTUM             3              65
D194V4, binary
                 cls
clus                0   1
  ERBB3 MUTATED     7   7
  ERBB3 WILD-TYPE 100 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB3 MUTATED      7    7
  ERBB3 WILD-TYPE  100  110
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  FEMALE             7             100
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ERBB3 MUTATED                     11                             0
  ERBB3 WILD-TYPE                  117                            24
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ERBB3 MUTATED                       3                              0
  ERBB3 WILD-TYPE                    54                              8
D194V5, multiclass
                                clus
vv                               ERBB3 MUTATED ERBB3 WILD-TYPE
  COLON ADENOCARCINOMA                      11             117
  COLON MUCINOUS ADENOCARCINOMA              0              24
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  ERBB3 MUTATED     0   3   9   2
  ERBB3 WILD-TYPE   9  44 141  15
D194V6, multiclass
    clus
vv   ERBB3 MUTATED ERBB3 WILD-TYPE
  T1             0               9
  T2             3              44
  T3             9             141
  T4             2              15
                 vv
clus               N0  N1  N2
  ERBB3 MUTATED     9   3   2
  ERBB3 WILD-TYPE 125  41  44
D194V7, multiclass
    clus
vv   ERBB3 MUTATED ERBB3 WILD-TYPE
  N0             9             125
  N1             3              41
  N2             2              44
                 vv
clus               M0  M1 M1A
  ERBB3 MUTATED    13   1   0
  ERBB3 WILD-TYPE 176  30   1
D194V8, multiclass
     clus
vv    ERBB3 MUTATED ERBB3 WILD-TYPE
  M0             13             176
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  ERBB3 MUTATED    2  7   4  1
  ERBB3 WILD-TYPE 46 75  56 28
D194V9, multiclass
     clus
vv    ERBB3 MUTATED ERBB3 WILD-TYPE
  I               2              46
  II              7              75
  III             4              56
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  ERBB3 MUTATED    13   0   1   0
  ERBB3 WILD-TYPE 175   2  26   1
D194V10, multiclass
    clus
vv   ERBB3 MUTATED ERBB3 WILD-TYPE
  R0            13             175
  R1             0               2
  R2             1              26
  RX             0               1
D194V11, continuous

Clustering(195) Variable = PSG8 MUTATION ANALYSIS
D195V1, survival
                sevent
clus2              0   1
  PSG8 MUTATED     2   1
  PSG8 WILD-TYPE 104  13
  PSG8 MUTATED PSG8 WILD-TYPE 
             3            117 
  PSG8 MUTATED PSG8 WILD-TYPE 
             1             13 
$`PSG8 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01X 
        1.02         4.01        26.01 

$`PSG8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  PSG8 MUTATED PSG8 WILD-TYPE 
          1.02           0.92 
  PSG8 MUTATED PSG8 WILD-TYPE 
         26.01          72.07 
  PSG8 MUTATED PSG8 WILD-TYPE 
          4.01          10.98 
[1] "1.0 - 26.0 (4.0)"  "0.9 - 72.1 (11.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
[1] "hr=" "3.7"
D195V2, continuous
D195V3, binary
                cls
clus               0   1
  PSG8 MUTATED     8   0
  PSG8 WILD-TYPE 146  68
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      8    0
  PSG8 WILD-TYPE  146   68
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  COLON             8            146
  RECTUM            0             68
D195V4, binary
                cls
clus               0   1
  PSG8 MUTATED     4   4
  PSG8 WILD-TYPE 103 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      4    4
  PSG8 WILD-TYPE  103  113
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  FEMALE            4            103
  MALE              4            113
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  PSG8 MUTATED                      6                             2
  PSG8 WILD-TYPE                  122                            22
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  PSG8 MUTATED                       0                              0
  PSG8 WILD-TYPE                    57                              8
D195V5, multiclass
                                clus
vv                               PSG8 MUTATED PSG8 WILD-TYPE
  COLON ADENOCARCINOMA                      6            122
  COLON MUCINOUS ADENOCARCINOMA             2             22
  RECTAL ADENOCARCINOMA                     0             57
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  PSG8 MUTATED     0   2   4   2
  PSG8 WILD-TYPE   9  45 146  15
D195V6, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  T1            0              9
  T2            2             45
  T3            4            146
  T4            2             15
                vv
clus              N0  N1  N2
  PSG8 MUTATED     5   2   1
  PSG8 WILD-TYPE 129  42  45
D195V7, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  N0            5            129
  N1            2             42
  N2            1             45
                vv
clus              M0  M1 M1A
  PSG8 MUTATED     6   1   0
  PSG8 WILD-TYPE 183  30   1
D195V8, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  M0             6            183
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  PSG8 MUTATED    0  4   2  1
  PSG8 WILD-TYPE 48 78  58 28
D195V9, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  I              0             48
  II             4             78
  III            2             58
  IV             1             28
                vv
clus              R0  R1  R2  RX
  PSG8 MUTATED     5   0   1   1
  PSG8 WILD-TYPE 183   2  26   0
D195V10, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  R0            5            183
  R1            0              2
  R2            1             26
  RX            1              0
D195V11, continuous

Clustering(196) Variable = SYT16 MUTATION ANALYSIS
D196V1, survival
                 sevent
clus2               0   1
  SYT16 MUTATED     6   0
  SYT16 WILD-TYPE 100  14
  SYT16 MUTATED SYT16 WILD-TYPE 
              6             114 
  SYT16 MUTATED SYT16 WILD-TYPE 
              0              14 
$`SYT16 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A01R TCGA-AG-3892 TCGA-AG-A002 
        9.14         1.02         0.99        35.01         1.02        20.94 

$`SYT16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 
        0.99         1.02         0.95         0.99         0.92         0.99 
TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 
        0.99         1.02         1.02         1.02         1.02        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  SYT16 MUTATED SYT16 WILD-TYPE 
           0.99            0.92 
  SYT16 MUTATED SYT16 WILD-TYPE 
          35.01           72.07 
  SYT16 MUTATED SYT16 WILD-TYPE 
           5.08           11.49 
[1] "1.0 - 35.0 (5.1)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYT16 WILD-TYPE"   "SYT16 MUTATED"   "SYT16 MUTATED" "SYT16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"SYT16 WILD-TYPE"   "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "SYT16 MUTATED" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" "SYT16 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D196V2, continuous
D196V3, binary
                 cls
clus                0   1
  SYT16 MUTATED     6   3
  SYT16 WILD-TYPE 148  65
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      6    3
  SYT16 WILD-TYPE  148   65
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  COLON              6             148
  RECTUM             3              65
D196V4, binary
                 cls
clus                0   1
  SYT16 MUTATED     4   5
  SYT16 WILD-TYPE 103 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYT16 MUTATED      4    5
  SYT16 WILD-TYPE  103  112
        clus
vv       SYT16 MUTATED SYT16 WILD-TYPE
  FEMALE             4             103
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SYT16 MUTATED                      4                             2
  SYT16 WILD-TYPE                  124                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SYT16 MUTATED                       3                              0
  SYT16 WILD-TYPE                    54                              8
D196V5, multiclass
                                clus
vv                               SYT16 MUTATED SYT16 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      3              54
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  SYT16 MUTATED     1   3   5   0
  SYT16 WILD-TYPE   8  44 145  17
D196V6, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  T1             1               8
  T2             3              44
  T3             5             145
  T4             0              17
                 vv
clus               N0  N1  N2
  SYT16 MUTATED     8   0   1
  SYT16 WILD-TYPE 126  44  45
D196V7, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  N0             8             126
  N1             0              44
  N2             1              45
                 vv
clus               M0  M1 M1A
  SYT16 MUTATED     9   0   0
  SYT16 WILD-TYPE 180  31   1
D196V8, multiclass
     clus
vv    SYT16 MUTATED SYT16 WILD-TYPE
  M0              9             180
  M1              0              31
  M1A             0               1
                 vv
clus               I II III IV
  SYT16 MUTATED    4  4   1  0
  SYT16 WILD-TYPE 44 78  59 29
D196V9, multiclass
     clus
vv    SYT16 MUTATED SYT16 WILD-TYPE
  I               4              44
  II              4              78
  III             1              59
  IV              0              29
                 vv
clus               R0  R1  R2  RX
  SYT16 MUTATED     9   0   0   0
  SYT16 WILD-TYPE 179   2  27   1
D196V10, multiclass
    clus
vv   SYT16 MUTATED SYT16 WILD-TYPE
  R0             9             179
  R1             0               2
  R2             0              27
  RX             0               1
D196V11, continuous

Clustering(197) Variable = LPHN3 MUTATION ANALYSIS
D197V1, survival
                 sevent
clus2              0  1
  LPHN3 MUTATED    8  2
  LPHN3 WILD-TYPE 98 12
  LPHN3 MUTATED LPHN3 WILD-TYPE 
             10             110 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
              2              12 
$`LPHN3 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 
        0.99         0.99         1.02         4.01        20.98         1.02 
TCGA-AG-A002 TCGA-AG-A01W TCGA-AG-A026 TCGA-AG-A032 
       20.94        70.03         1.94        38.01 

$`LPHN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02         1.02        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
       25.94        23.01        17.03        15.91        13.02         1.02 
TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A02G TCGA-AG-A02N 
       12.00        63.98        10.98        49.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A036 
       40.96        72.07 

  LPHN3 MUTATED LPHN3 WILD-TYPE 
           0.99            0.92 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
          70.03           72.07 
  LPHN3 MUTATED LPHN3 WILD-TYPE 
          2.975          11.490 
[1] "1.0 - 70.0 (3.0)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "LPHN3 MUTATED" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"LPHN3 WILD-TYPE" "LPHN3 WILD-TYPE"   "LPHN3 MUTATED" "LPHN3 WILD-TYPE" 
[1] "hr=" "1.9"
D197V2, continuous
D197V3, binary
                 cls
clus                0   1
  LPHN3 MUTATED     7   6
  LPHN3 WILD-TYPE 147  62
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPHN3 MUTATED      7    6
  LPHN3 WILD-TYPE  147   62
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  COLON              7             147
  RECTUM             6              62
D197V4, binary
                 cls
clus                0   1
  LPHN3 MUTATED     6   7
  LPHN3 WILD-TYPE 101 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPHN3 MUTATED      6    7
  LPHN3 WILD-TYPE  101  110
        clus
vv       LPHN3 MUTATED LPHN3 WILD-TYPE
  FEMALE             6             101
  MALE               7             110
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LPHN3 MUTATED                      5                             2
  LPHN3 WILD-TYPE                  123                            22
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LPHN3 MUTATED                       5                              0
  LPHN3 WILD-TYPE                    52                              8
D197V5, multiclass
                                clus
vv                               LPHN3 MUTATED LPHN3 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              2              22
  RECTAL ADENOCARCINOMA                      5              52
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  LPHN3 MUTATED     1   2   5   5
  LPHN3 WILD-TYPE   8  45 145  12
D197V6, multiclass
    clus
vv   LPHN3 MUTATED LPHN3 WILD-TYPE
  T1             1               8
  T2             2              45
  T3             5             145
  T4             5              12
                 vv
clus               N0  N1  N2
  LPHN3 MUTATED    11   1   1
  LPHN3 WILD-TYPE 123  43  45
D197V7, multiclass
    clus
vv   LPHN3 MUTATED LPHN3 WILD-TYPE
  N0            11             123
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  LPHN3 MUTATED    11   1   0
  LPHN3 WILD-TYPE 178  30   1
D197V8, multiclass
     clus
vv    LPHN3 MUTATED LPHN3 WILD-TYPE
  M0             11             178
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  LPHN3 MUTATED    2  8   1  1
  LPHN3 WILD-TYPE 46 74  59 28
D197V9, multiclass
     clus
vv    LPHN3 MUTATED LPHN3 WILD-TYPE
  I               2              46
  II              8              74
  III             1              59
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  LPHN3 MUTATED     9   1   1   0
  LPHN3 WILD-TYPE 179   1  26   1
D197V10, multiclass
    clus
vv   LPHN3 MUTATED LPHN3 WILD-TYPE
  R0             9             179
  R1             1               1
  R2             1              26
  RX             0               1
D197V11, continuous

Clustering(198) Variable = LRP2 MUTATION ANALYSIS
D198V1, survival
                sevent
clus2             0  1
  LRP2 MUTATED   19  3
  LRP2 WILD-TYPE 87 11
  LRP2 MUTATED LRP2 WILD-TYPE 
            22             98 
  LRP2 MUTATED LRP2 WILD-TYPE 
             3             11 
$`LRP2 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         0.99         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
        1.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A02O 
       20.98        38.07         1.02        35.01        33.04         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A014 TCGA-AG-A02G 
        1.02        20.94        15.91        38.93 

$`LRP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00Q 
       13.94        18.02        19.00        30.02        18.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01S TCGA-AA-A01V 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       23.01        17.03        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X 
       63.98        10.98        49.94         1.94        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  LRP2 MUTATED LRP2 WILD-TYPE 
          0.92           0.92 
  LRP2 MUTATED LRP2 WILD-TYPE 
         38.93          72.07 
  LRP2 MUTATED LRP2 WILD-TYPE 
          9.96          10.95 
[1] "0.9 - 38.9 (10.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
[1] "hr=" "1.4"
D198V2, continuous
D198V3, binary
                cls
clus               0   1
  LRP2 MUTATED    28   7
  LRP2 WILD-TYPE 126  61
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     28    7
  LRP2 WILD-TYPE  126   61
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  COLON            28            126
  RECTUM            7             61
D198V4, binary
                cls
clus               0   1
  LRP2 MUTATED    19  16
  LRP2 WILD-TYPE  88 101
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     19   16
  LRP2 WILD-TYPE   88  101
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  FEMALE           19             88
  MALE             16            101
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  LRP2 MUTATED                     19                             8
  LRP2 WILD-TYPE                  109                            16
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  LRP2 MUTATED                       7                              0
  LRP2 WILD-TYPE                    50                              8
D198V5, multiclass
                                clus
vv                               LRP2 MUTATED LRP2 WILD-TYPE
  COLON ADENOCARCINOMA                     19            109
  COLON MUCINOUS ADENOCARCINOMA             8             16
  RECTAL ADENOCARCINOMA                     7             50
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  LRP2 MUTATED     2   7  21   5
  LRP2 WILD-TYPE   7  40 129  12
D198V6, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  T1            2              7
  T2            7             40
  T3           21            129
  T4            5             12
                vv
clus              N0  N1  N2
  LRP2 MUTATED    22   7   6
  LRP2 WILD-TYPE 112  37  40
D198V7, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  N0           22            112
  N1            7             37
  N2            6             40
                vv
clus              M0  M1 M1A
  LRP2 MUTATED    32   2   0
  LRP2 WILD-TYPE 157  29   1
D198V8, multiclass
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  M0            32            157
  M1             2             29
  M1A            0              1
                vv
clus              I II III IV
  LRP2 MUTATED    7 14  11  2
  LRP2 WILD-TYPE 41 68  49 27
D198V9, multiclass
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  I              7             41
  II            14             68
  III           11             49
  IV             2             27
                vv
clus              R0  R1  R2  RX
  LRP2 MUTATED    31   0   2   0
  LRP2 WILD-TYPE 157   2  25   1
D198V10, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  R0           31            157
  R1            0              2
  R2            2             25
  RX            0              1
D198V11, continuous

Clustering(199) Variable = SOHLH2 MUTATION ANALYSIS
D199V1, survival
                  sevent
clus2                0   1
  SOHLH2 MUTATED     3   2
  SOHLH2 WILD-TYPE 103  12
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               5              115 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               2               12 
$`SOHLH2 MUTATED`
TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A02N 
        1.02         1.02         4.01        20.98        61.94 

$`SOHLH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       10.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
            1.02             0.92 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
           61.94            72.07 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
            4.01            10.98 
[1] "1.0 - 61.9 (4.0)"  "0.9 - 72.1 (11.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
[1] "hr=" "3.1"
D199V2, continuous
D199V3, binary
                  cls
clus                 0   1
  SOHLH2 MUTATED     8   1
  SOHLH2 WILD-TYPE 146  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      8    1
  SOHLH2 WILD-TYPE  146   67
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  COLON               8              146
  RECTUM              1               67
D199V4, binary
                  cls
clus                 0   1
  SOHLH2 MUTATED     4   5
  SOHLH2 WILD-TYPE 103 112
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      4    5
  SOHLH2 WILD-TYPE  103  112
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  FEMALE              4              103
  MALE                5              112
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SOHLH2 MUTATED                      7                             1
  SOHLH2 WILD-TYPE                  121                            23
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SOHLH2 MUTATED                       1                              0
  SOHLH2 WILD-TYPE                    56                              8
D199V5, multiclass
                                clus
vv                               SOHLH2 MUTATED SOHLH2 WILD-TYPE
  COLON ADENOCARCINOMA                        7              121
  COLON MUCINOUS ADENOCARCINOMA               1               23
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  SOHLH2 MUTATED     0   2   4   3
  SOHLH2 WILD-TYPE   9  45 146  14
D199V6, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              4              146
  T4              3               14
                  vv
clus                N0  N1  N2
  SOHLH2 MUTATED     5   3   1
  SOHLH2 WILD-TYPE 129  41  45
D199V7, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  N0              5              129
  N1              3               41
  N2              1               45
                  vv
clus                M0  M1 M1A
  SOHLH2 MUTATED     7   1   0
  SOHLH2 WILD-TYPE 182  30   1
D199V8, multiclass
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  M0               7              182
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  SOHLH2 MUTATED    1  3   3  1
  SOHLH2 WILD-TYPE 47 79  57 28
D199V9, multiclass
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  I                1               47
  II               3               79
  III              3               57
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  SOHLH2 MUTATED     6   0   1   0
  SOHLH2 WILD-TYPE 182   2  26   1
D199V10, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  R0              6              182
  R1              0                2
  R2              1               26
  RX              0                1
D199V11, continuous

Clustering(200) Variable = ZIM3 MUTATION ANALYSIS
D200V1, survival
                sevent
clus2              0   1
  ZIM3 MUTATED     6   1
  ZIM3 WILD-TYPE 100  13
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             7            113 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
             1             13 
$`ZIM3 MUTATED`
TCGA-AA-3977 TCGA-AA-A010 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-A002 TCGA-AG-A020 
        1.02        20.98         1.02         0.99        20.94        10.98 
TCGA-AG-A026 
        1.94 

$`ZIM3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 
       39.95        18.02        40.93        16.31         0.95        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 
       10.62        13.55        12.72        10.39         1.02         1.02 
TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 
        2.01         1.02         0.99         1.02         0.95         0.99 
TCGA-AG-3887 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.92         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A025 
       13.02         1.02        12.00        70.03        63.98        49.94 
TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       38.93        61.94        40.96        38.01        72.07 

  ZIM3 MUTATED ZIM3 WILD-TYPE 
          0.99           0.92 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
         20.98          72.07 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
          1.94          12.00 
[1] "1.0 - 21.0 (1.9)"  "0.9 - 72.1 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"ZIM3 WILD-TYPE"   "ZIM3 MUTATED"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
  "ZIM3 MUTATED" "ZIM3 WILD-TYPE"   "ZIM3 MUTATED" "ZIM3 WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" "ZIM3 WILD-TYPE" 
[1] "hr=" "1.8"
D200V2, continuous
D200V3, binary
                cls
clus               0   1
  ZIM3 MUTATED     4   5
  ZIM3 WILD-TYPE 150  63
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      4    5
  ZIM3 WILD-TYPE  150   63
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON             4            150
  RECTUM            5             63
D200V4, binary
                cls
clus               0   1
  ZIM3 MUTATED     5   4
  ZIM3 WILD-TYPE 102 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIM3 MUTATED      5    4
  ZIM3 WILD-TYPE  102  113
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  FEMALE            5            102
  MALE              4            113
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  ZIM3 MUTATED                      4                             0
  ZIM3 WILD-TYPE                  124                            24
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  ZIM3 MUTATED                       4                              1
  ZIM3 WILD-TYPE                    53                              7
D200V5, multiclass
                                clus
vv                               ZIM3 MUTATED ZIM3 WILD-TYPE
  COLON ADENOCARCINOMA                      4            124
  COLON MUCINOUS ADENOCARCINOMA             0             24
  RECTAL ADENOCARCINOMA                     4             53
  RECTAL MUCINOUS ADENOCARCINOMA            1              7
                vv
clus              T1  T2  T3  T4
  ZIM3 MUTATED     1   2   4   2
  ZIM3 WILD-TYPE   8  45 146  15
D200V6, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  T1            1              8
  T2            2             45
  T3            4            146
  T4            2             15
                vv
clus              N0  N1  N2
  ZIM3 MUTATED     6   3   0
  ZIM3 WILD-TYPE 128  41  46
D200V7, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  N0            6            128
  N1            3             41
  N2            0             46
                vv
clus              M0  M1 M1A
  ZIM3 MUTATED     8   0   0
  ZIM3 WILD-TYPE 181  31   1
D200V8, multiclass
     clus
vv    ZIM3 MUTATED ZIM3 WILD-TYPE
  M0             8            181
  M1             0             31
  M1A            0              1
                vv
clus              I II III IV
  ZIM3 MUTATED    2  3   3  0
  ZIM3 WILD-TYPE 46 79  57 29
D200V9, multiclass
     clus
vv    ZIM3 MUTATED ZIM3 WILD-TYPE
  I              2             46
  II             3             79
  III            3             57
  IV             0             29
                vv
clus              R0  R1  R2  RX
  ZIM3 MUTATED     7   1   0   0
  ZIM3 WILD-TYPE 181   1  27   1
D200V10, multiclass
    clus
vv   ZIM3 MUTATED ZIM3 WILD-TYPE
  R0            7            181
  R1            1              1
  R2            0             27
  RX            0              1
D200V11, continuous

Clustering(201) Variable = DSEL MUTATION ANALYSIS
D201V1, survival
                sevent
clus2             0  1
  DSEL MUTATED    8  1
  DSEL WILD-TYPE 98 13
  DSEL MUTATED DSEL WILD-TYPE 
             9            111 
  DSEL MUTATED DSEL WILD-TYPE 
             1             13 
$`DSEL MUTATED`
TCGA-A6-2676 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
       14.70         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01I TCGA-AG-A002 TCGA-AG-A025 
       12.00        20.94        49.94 

$`DSEL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       70.03        63.98        10.98         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  DSEL MUTATED DSEL WILD-TYPE 
          0.99           0.92 
  DSEL MUTATED DSEL WILD-TYPE 
         49.94          72.07 
  DSEL MUTATED DSEL WILD-TYPE 
         12.00          10.92 
[1] "1.0 - 49.9 (12.0)" "0.9 - 72.1 (10.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071     TCGA-AF-2689 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AF-2691     TCGA-AF-2692     TCGA-AF-3400     TCGA-AF-3913 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3581     TCGA-AG-3582     TCGA-AG-3583     TCGA-AG-3587 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3599     TCGA-AG-3726     TCGA-AG-3727     TCGA-AG-3878 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3887     TCGA-AG-3892     TCGA-AG-3893     TCGA-AG-3894 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-3999     TCGA-AG-4001     TCGA-AG-4007     TCGA-AG-4008 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A002     TCGA-AG-A008     TCGA-AG-A00C     TCGA-AG-A00H 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A00Y     TCGA-AG-A011     TCGA-AG-A014     TCGA-AG-A015 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A016     TCGA-AG-A01L     TCGA-AG-A01W     TCGA-AG-A01Y 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A020     TCGA-AG-A025     TCGA-AG-A026     TCGA-AG-A02G 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AG-A02N     TCGA-AG-A02X     TCGA-AG-A032     TCGA-AG-A036 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
[1] "hr=" "1.1"
D201V2, continuous
D201V3, binary
                cls
clus               0   1
  DSEL MUTATED    12   2
  DSEL WILD-TYPE 142  66
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED     12    2
  DSEL WILD-TYPE  142   66
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  COLON            12            142
  RECTUM            2             66
D201V4, binary
                cls
clus               0   1
  DSEL MUTATED     9   5
  DSEL WILD-TYPE  98 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED      9    5
  DSEL WILD-TYPE   98  112
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  FEMALE            9             98
  MALE              5            112
                vv
clus             COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  DSEL MUTATED                      8                             4
  DSEL WILD-TYPE                  120                            20
                vv
clus             RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  DSEL MUTATED                       2                              0
  DSEL WILD-TYPE                    55                              8
D201V5, multiclass
                                clus
vv                               DSEL MUTATED DSEL WILD-TYPE
  COLON ADENOCARCINOMA                      8            120
  COLON MUCINOUS ADENOCARCINOMA             4             20
  RECTAL ADENOCARCINOMA                     2             55
  RECTAL MUCINOUS ADENOCARCINOMA            0              8
                vv
clus              T1  T2  T3  T4
  DSEL MUTATED     1   3   6   3
  DSEL WILD-TYPE   8  44 144  14
D201V6, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  T1            1              8
  T2            3             44
  T3            6            144
  T4            3             14
                vv
clus              N0  N1  N2
  DSEL MUTATED    11   3   0
  DSEL WILD-TYPE 123  41  46
D201V7, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  N0           11            123
  N1            3             41
  N2            0             46
                vv
clus              M0  M1 M1A
  DSEL MUTATED    12   1   0
  DSEL WILD-TYPE 177  30   1
D201V8, multiclass
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  M0            12            177
  M1             1             30
  M1A            0              1
                vv
clus              I II III IV
  DSEL MUTATED    3  7   2  1
  DSEL WILD-TYPE 45 75  58 28
D201V9, multiclass
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  I              3             45
  II             7             75
  III            2             58
  IV             1             28
                vv
clus              R0  R1  R2  RX
  DSEL MUTATED    12   0   1   0
  DSEL WILD-TYPE 176   2  26   1
D201V10, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  R0           12            176
  R1            0              2
  R2            1             26
  RX            0              1
D201V11, continuous

Clustering(202) Variable = RNASE11 MUTATION ANALYSIS
D202V1, survival
                   sevent
clus2                 0   1
  RNASE11 MUTATED     4   0
  RNASE11 WILD-TYPE 102  14
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                4               116 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                0                14 
$`RNASE11 MUTATED`
TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A010 TCGA-AA-A02W 
        1.02        19.00        20.98        40.96 

$`RNASE11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 
       20.94        13.91         6.02        25.94        23.01        17.03 
TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y 
       15.91        13.02         1.02        12.00        70.03        63.98 
TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
       10.98        49.94         1.94        38.93        61.94        40.96 
TCGA-AG-A032 TCGA-AG-A036 
       38.01        72.07 

  RNASE11 MUTATED RNASE11 WILD-TYPE 
             1.02              0.92 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
            40.96             72.07 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
            19.99             10.77 
[1] "1.0 - 41.0 (20.0)" "0.9 - 72.1 (10.8)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D202V2, continuous
D202V3, binary
                   cls
clus                  0   1
  RNASE11 MUTATED     5   0
  RNASE11 WILD-TYPE 149  68
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      5    0
  RNASE11 WILD-TYPE  149   68
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  COLON                5               149
  RECTUM               0                68
D202V4, binary
                   cls
clus                  0   1
  RNASE11 MUTATED     3   2
  RNASE11 WILD-TYPE 104 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      3    2
  RNASE11 WILD-TYPE  104  115
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  FEMALE               3               104
  MALE                 2               115
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  RNASE11 MUTATED                      5                             0
  RNASE11 WILD-TYPE                  123                            24
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  RNASE11 MUTATED                       0                              0
  RNASE11 WILD-TYPE                    57                              8
D202V5, multiclass
                                clus
vv                               RNASE11 MUTATED RNASE11 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                0                24
  RECTAL ADENOCARCINOMA                        0                57
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  RNASE11 MUTATED     0   3   1   1
  RNASE11 WILD-TYPE   9  44 149  16
D202V6, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  T1               0                 9
  T2               3                44
  T3               1               149
  T4               1                16
                   vv
clus                 N0  N1  N2
  RNASE11 MUTATED     5   0   0
  RNASE11 WILD-TYPE 129  44  46
D202V7, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  N0               5               129
  N1               0                44
  N2               0                46
                   vv
clus                 M0  M1 M1A
  RNASE11 MUTATED     4   0   0
  RNASE11 WILD-TYPE 185  31   1
D202V8, multiclass
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  M0                4               185
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  RNASE11 MUTATED    2  2   0  0
  RNASE11 WILD-TYPE 46 80  60 29
D202V9, multiclass
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  I                 2                46
  II                2                80
  III               0                60
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  RNASE11 MUTATED     4   0   0   0
  RNASE11 WILD-TYPE 184   2  27   1
D202V10, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  R0               4               184
  R1               0                 2
  R2               0                27
  RX               0                 1
D202V11, continuous

Clustering(203) Variable = MDGA2 MUTATION ANALYSIS
D203V1, survival
                 sevent
clus2               0   1
  MDGA2 MUTATED     5   1
  MDGA2 WILD-TYPE 101  13
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              6             114 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              1              13 
$`MDGA2 MUTATED`
TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AG-A002 TCGA-AG-A01W 
        0.99         0.99         1.02         4.01        20.94        70.03 

$`MDGA2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 
       40.93        16.31         0.95        15.85        10.62        13.55 
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       12.72        10.39         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
       13.02         1.02        12.00        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  MDGA2 MUTATED MDGA2 WILD-TYPE 
           0.99            0.92 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
          70.03           72.07 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
          2.515          11.490 
[1] "1.0 - 70.0 (2.5)"  "0.9 - 72.1 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
  "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
[1] "hr=" "1.4"
D203V2, continuous
D203V3, binary
                 cls
clus                0   1
  MDGA2 MUTATED     8   2
  MDGA2 WILD-TYPE 146  66
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      8    2
  MDGA2 WILD-TYPE  146   66
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  COLON              8             146
  RECTUM             2              66
D203V4, binary
                 cls
clus                0   1
  MDGA2 MUTATED     5   5
  MDGA2 WILD-TYPE 102 112
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      5    5
  MDGA2 WILD-TYPE  102  112
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  FEMALE             5             102
  MALE               5             112
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  MDGA2 MUTATED                      5                             3
  MDGA2 WILD-TYPE                  123                            21
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  MDGA2 MUTATED                       2                              0
  MDGA2 WILD-TYPE                    55                              8
D203V5, multiclass
                                clus
vv                               MDGA2 MUTATED MDGA2 WILD-TYPE
  COLON ADENOCARCINOMA                       5             123
  COLON MUCINOUS ADENOCARCINOMA              3              21
  RECTAL ADENOCARCINOMA                      2              55
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  MDGA2 MUTATED     0   2   6   2
  MDGA2 WILD-TYPE   9  45 144  15
D203V6, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  T1             0               9
  T2             2              45
  T3             6             144
  T4             2              15
                 vv
clus               N0  N1  N2
  MDGA2 MUTATED     7   1   2
  MDGA2 WILD-TYPE 127  43  44
D203V7, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  N0             7             127
  N1             1              43
  N2             2              44
                 vv
clus               M0  M1 M1A
  MDGA2 MUTATED     8   1   0
  MDGA2 WILD-TYPE 181  30   1
D203V8, multiclass
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  M0              8             181
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  MDGA2 MUTATED    1  5   2  1
  MDGA2 WILD-TYPE 47 77  58 28
D203V9, multiclass
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  I               1              47
  II              5              77
  III             2              58
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  MDGA2 MUTATED     8   0   1   0
  MDGA2 WILD-TYPE 180   2  26   1
D203V10, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  R0             8             180
  R1             0               2
  R2             1              26
  RX             0               1
D203V11, continuous

Clustering(204) Variable = RBMS3 MUTATION ANALYSIS
D204V1, survival
                 sevent
clus2               0   1
  RBMS3 MUTATED     3   0
  RBMS3 WILD-TYPE 103  14
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              3             117 
  RBMS3 MUTATED RBMS3 WILD-TYPE 
              0              14 
$`RBMS3 MUTATED`
TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A03J 
        1.02        20.98        40.93 

$`RBMS3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       39.95        18.02        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N 
       63.98        10.98        49.94         1.94        38.93        61.94 
TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       40.96        38.01        72.07 

  RBMS3 MUTATED RBMS3 WILD-TYPE 
           1.02            0.92 
  RBMS3 MUTATED RBMS3 WILD-TYPE 
          40.93           72.07 
  RBMS3 MUTATED RBMS3 WILD-TYPE 
          20.98           10.92 
[1] "1.0 - 40.9 (21.0)" "0.9 - 72.1 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RBMS3 WILD-TYPE"   "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RBMS3 WILD-TYPE"   "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RBMS3 WILD-TYPE"   "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071      TCGA-AF-2689 
  "RBMS3 MUTATED" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AF-2691      TCGA-AF-2692      TCGA-AF-3400      TCGA-AF-3913 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3581      TCGA-AG-3582      TCGA-AG-3583      TCGA-AG-3587 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3599      TCGA-AG-3726      TCGA-AG-3727      TCGA-AG-3878 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3887      TCGA-AG-3892      TCGA-AG-3893      TCGA-AG-3894 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-3999      TCGA-AG-4001      TCGA-AG-4007      TCGA-AG-4008 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A002      TCGA-AG-A008      TCGA-AG-A00C      TCGA-AG-A00H 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A00Y      TCGA-AG-A011      TCGA-AG-A014      TCGA-AG-A015 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A016      TCGA-AG-A01L      TCGA-AG-A01W      TCGA-AG-A01Y 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A020      TCGA-AG-A025      TCGA-AG-A026      TCGA-AG-A02G 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
     TCGA-AG-A02N      TCGA-AG-A02X      TCGA-AG-A032      TCGA-AG-A036 
"RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" "RBMS3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D204V2, continuous
D204V3, binary
                 cls
clus                0   1
  RBMS3 MUTATED     5   1
  RBMS3 WILD-TYPE 149  67
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBMS3 MUTATED      5    1
  RBMS3 WILD-TYPE  149   67
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  COLON              5             149
  RECTUM             1              67
D204V4, binary
                 cls
clus                0   1
  RBMS3 MUTATED     4   2
  RBMS3 WILD-TYPE 103 115
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RBMS3 MUTATED      4    2
  RBMS3 WILD-TYPE  103  115
        clus
vv       RBMS3 MUTATED RBMS3 WILD-TYPE
  FEMALE             4             103
  MALE               2             115
                 vv
clus              COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  RBMS3 MUTATED                      4                             1
  RBMS3 WILD-TYPE                  124                            23
                 vv
clus              RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  RBMS3 MUTATED                       1                              0
  RBMS3 WILD-TYPE                    56                              8
D204V5, multiclass
                                clus
vv                               RBMS3 MUTATED RBMS3 WILD-TYPE
  COLON ADENOCARCINOMA                       4             124
  COLON MUCINOUS ADENOCARCINOMA              1              23
  RECTAL ADENOCARCINOMA                      1              56
  RECTAL MUCINOUS ADENOCARCINOMA             0               8
                 vv
clus               T1  T2  T3  T4
  RBMS3 MUTATED     0   1   3   2
  RBMS3 WILD-TYPE   9  46 147  15
D204V6, multiclass
    clus
vv   RBMS3 MUTATED RBMS3 WILD-TYPE
  T1             0               9
  T2             1              46
  T3             3             147
  T4             2              15
                 vv
clus               N0  N1  N2
  RBMS3 MUTATED     4   1   1
  RBMS3 WILD-TYPE 130  43  45
D204V7, multiclass
    clus
vv   RBMS3 MUTATED RBMS3 WILD-TYPE
  N0             4             130
  N1             1              43
  N2             1              45
                 vv
clus               M0  M1 M1A
  RBMS3 MUTATED     5   1   0
  RBMS3 WILD-TYPE 184  30   1
D204V8, multiclass
     clus
vv    RBMS3 MUTATED RBMS3 WILD-TYPE
  M0              5             184
  M1              1              30
  M1A             0               1
                 vv
clus               I II III IV
  RBMS3 MUTATED    1  3   1  1
  RBMS3 WILD-TYPE 47 79  59 28
D204V9, multiclass
     clus
vv    RBMS3 MUTATED RBMS3 WILD-TYPE
  I               1              47
  II              3              79
  III             1              59
  IV              1              28
                 vv
clus               R0  R1  R2  RX
  RBMS3 MUTATED     4   0   1   0
  RBMS3 WILD-TYPE 184   2  26   1
D204V10, multiclass
    clus
vv   RBMS3 MUTATED RBMS3 WILD-TYPE
  R0             4             184
  R1             0               2
  R2             1              26
  RX             0               1
D204V11, continuous

Clustering(205) Variable = COL6A6 MUTATION ANALYSIS
D205V1, survival
                  sevent
clus2               0  1
  COL6A6 MUTATED    9  2
  COL6A6 WILD-TYPE 97 12
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              11              109 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
               2               12 
$`COL6A6 MUTATED`
TCGA-A6-3808 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00N 
        9.14         0.99         0.99         1.02         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AA-A02Y TCGA-AF-3913 TCGA-AG-A002 
       20.98        51.95        39.95        10.39        20.94 

$`COL6A6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 
       13.55        12.72         1.02         1.02         2.01         1.02 
TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 
        0.99         1.02         0.95         0.99         0.92         1.02 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 
       13.91         6.02        25.94        23.01        17.03        15.91 
TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
       13.02         1.02        12.00        70.03        63.98        10.98 
TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 
       49.94         1.94        38.93        61.94        40.96        38.01 
TCGA-AG-A036 
       72.07 

  COL6A6 MUTATED COL6A6 WILD-TYPE 
            0.99             0.92 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
           51.95            72.07 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
            9.14            12.00 
[1] "1.0 - 52.0 (9.1)"  "0.9 - 72.1 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
[1] "hr=" "1.4"
D205V2, continuous
D205V3, binary
                  cls
clus                 0   1
  COL6A6 MUTATED    14   2
  COL6A6 WILD-TYPE 140  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED     14    2
  COL6A6 WILD-TYPE  140   66
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  COLON              14              140
  RECTUM              2               66
D205V4, binary
                  cls
clus                 0   1
  COL6A6 MUTATED     5  11
  COL6A6 WILD-TYPE 102 106
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED      5   11
  COL6A6 WILD-TYPE  102  106
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  FEMALE              5              102
  MALE               11              106
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  COL6A6 MUTATED                     11                             3
  COL6A6 WILD-TYPE                  117                            21
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  COL6A6 MUTATED                       2                              0
  COL6A6 WILD-TYPE                    55                              8
D205V5, multiclass
                                clus
vv                               COL6A6 MUTATED COL6A6 WILD-TYPE
  COLON ADENOCARCINOMA                       11              117
  COLON MUCINOUS ADENOCARCINOMA               3               21
  RECTAL ADENOCARCINOMA                       2               55
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  COL6A6 MUTATED     0   5   8   3
  COL6A6 WILD-TYPE   9  42 142  14
D205V6, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  T1              0                9
  T2              5               42
  T3              8              142
  T4              3               14
                  vv
clus                N0  N1  N2
  COL6A6 MUTATED    14   2   0
  COL6A6 WILD-TYPE 120  42  46
D205V7, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  N0             14              120
  N1              2               42
  N2              0               46
                  vv
clus                M0  M1 M1A
  COL6A6 MUTATED    14   1   0
  COL6A6 WILD-TYPE 175  30   1
D205V8, multiclass
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  M0              14              175
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  COL6A6 MUTATED    4  9   1  0
  COL6A6 WILD-TYPE 44 73  59 29
D205V9, multiclass
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  I                4               44
  II               9               73
  III              1               59
  IV               0               29
                  vv
clus                R0  R1  R2  RX
  COL6A6 MUTATED    15   0   0   0
  COL6A6 WILD-TYPE 173   2  27   1
D205V10, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  R0             15              173
  R1              0                2
  R2              0               27
  RX              0                1
D205V11, continuous

Clustering(206) Variable = TMBIM4 MUTATION ANALYSIS
D206V1, survival
                  sevent
clus2                0   1
  TMBIM4 MUTATED     2   0
  TMBIM4 WILD-TYPE 104  14
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              118 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               0               14 
$`TMBIM4 MUTATED`
TCGA-AA-3977 TCGA-AG-A00H 
        1.02        25.94 

$`TMBIM4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 
       15.85        10.62        13.55        12.72        10.39         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 
        1.02         2.01         1.02         0.99         1.02         0.95 
TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.99         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
            1.02             0.92 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
           25.94            72.07 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
           13.48            10.95 
[1] "1.0 - 25.9 (13.5)" "0.9 - 72.1 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              118 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689       TCGA-AF-2691 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913       TCGA-AG-3581 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587       TCGA-AG-3599 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878       TCGA-AG-3887 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894       TCGA-AG-3999 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008       TCGA-AG-A002 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00Y       TCGA-AG-A011 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A014       TCGA-AG-A015       TCGA-AG-A016       TCGA-AG-A01L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A01W       TCGA-AG-A01Y       TCGA-AG-A020       TCGA-AG-A025 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A026       TCGA-AG-A02G       TCGA-AG-A02N       TCGA-AG-A02X 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AG-A032       TCGA-AG-A036 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
D206V2, continuous
D206V3, binary
                  cls
clus                 0   1
  TMBIM4 MUTATED     3   1
  TMBIM4 WILD-TYPE 151  67
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      3    1
  TMBIM4 WILD-TYPE  151   67
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  COLON               3              151
  RECTUM              1               67
D206V4, binary
                  cls
clus                 0   1
  TMBIM4 MUTATED     1   3
  TMBIM4 WILD-TYPE 106 114
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      1    3
  TMBIM4 WILD-TYPE  106  114
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  FEMALE              1              106
  MALE                3              114
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  TMBIM4 MUTATED                      3                             0
  TMBIM4 WILD-TYPE                  125                            24
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  TMBIM4 MUTATED                       1                              0
  TMBIM4 WILD-TYPE                    56                              8
D206V5, multiclass
                                clus
vv                               TMBIM4 MUTATED TMBIM4 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               0               24
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              0                8
                  vv
clus                T1  T2  T3  T4
  TMBIM4 MUTATED     0   2   1   1
  TMBIM4 WILD-TYPE   9  45 149  16
D206V6, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  T1              0                9
  T2              2               45
  T3              1              149
  T4              1               16
                  vv
clus                N0  N1  N2
  TMBIM4 MUTATED     3   1   0
  TMBIM4 WILD-TYPE 131  43  46
D206V7, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  N0              3              131
  N1              1               43
  N2              0               46
                  vv
clus                M0  M1 M1A
  TMBIM4 MUTATED     2   1   0
  TMBIM4 WILD-TYPE 187  30   1
D206V8, multiclass
     clus
vv    TMBIM4 MUTATED TMBIM4 WILD-TYPE
  M0               2              187
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  TMBIM4 MUTATED    1  1   0  1
  TMBIM4 WILD-TYPE 47 81  60 28
D206V9, multiclass
     clus
vv    TMBIM4 MUTATED TMBIM4 WILD-TYPE
  I                1               47
  II               1               81
  III              0               60
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  TMBIM4 MUTATED     2   0   1   0
  TMBIM4 WILD-TYPE 186   2  26   1
D206V10, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  R0              2              186
  R1              0                2
  R2              1               26
  RX              0                1
D206V11, continuous

Clustering(207) Variable = FAM135B MUTATION ANALYSIS
D207V1, survival
                   sevent
clus2                0  1
  FAM135B MUTATED    7  1
  FAM135B WILD-TYPE 99 13
  FAM135B MUTATED FAM135B WILD-TYPE 
                8               112 
  FAM135B MUTATED FAM135B WILD-TYPE 
                1                13 
$`FAM135B MUTATED`
TCGA-A6-3810 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A02Y 
        8.09         0.99         1.02        38.07        35.01        39.95 
TCGA-AG-3892 TCGA-AG-A002 
        1.02        20.94 

$`FAM135B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 
        0.95        15.85        10.62        13.55        12.72        10.39 
TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 
        1.02         1.02         2.01         1.02         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.99         0.92         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H 
        1.02         1.02         1.02        13.91         6.02        25.94 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L 
       23.01        17.03        15.91        13.02         1.02        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
       61.94        40.96        38.01        72.07 

  FAM135B MUTATED FAM135B WILD-TYPE 
             0.99              0.92 
  FAM135B MUTATED FAM135B WILD-TYPE 
            39.95             72.07 
  FAM135B MUTATED FAM135B WILD-TYPE 
           14.515            10.950 
[1] "1.0 - 40.0 (14.5)" "0.9 - 72.1 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
  "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
[1] "hr=" "1.2"
D207V2, continuous
D207V3, binary
                   cls
clus                  0   1
  FAM135B MUTATED    12   3
  FAM135B WILD-TYPE 142  65
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM135B MUTATED     12    3
  FAM135B WILD-TYPE  142   65
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  COLON               12               142
  RECTUM               3                65
D207V4, binary
                   cls
clus                  0   1
  FAM135B MUTATED     7   8
  FAM135B WILD-TYPE 100 109
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM135B MUTATED      7    8
  FAM135B WILD-TYPE  100  109
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  FEMALE               7               100
  MALE                 8               109
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  FAM135B MUTATED                      9                             3
  FAM135B WILD-TYPE                  119                            21
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  FAM135B MUTATED                       3                              0
  FAM135B WILD-TYPE                    54                              8
D207V5, multiclass
                                clus
vv                               FAM135B MUTATED FAM135B WILD-TYPE
  COLON ADENOCARCINOMA                         9               119
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        3                54
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  FAM135B MUTATED     1   4  10   0
  FAM135B WILD-TYPE   8  43 140  17
D207V6, multiclass
    clus
vv   FAM135B MUTATED FAM135B WILD-TYPE
  T1               1                 8
  T2               4                43
  T3              10               140
  T4               0                17
                   vv
clus                 N0  N1  N2
  FAM135B MUTATED     8   4   3
  FAM135B WILD-TYPE 126  40  43
D207V7, multiclass
    clus
vv   FAM135B MUTATED FAM135B WILD-TYPE
  N0               8               126
  N1               4                40
  N2               3                43
                   vv
clus                 M0  M1 M1A
  FAM135B MUTATED    12   2   0
  FAM135B WILD-TYPE 177  29   1
D207V8, multiclass
     clus
vv    FAM135B MUTATED FAM135B WILD-TYPE
  M0               12               177
  M1                2                29
  M1A               0                 1
                   vv
clus                 I II III IV
  FAM135B MUTATED    4  3   5  2
  FAM135B WILD-TYPE 44 79  55 27
D207V9, multiclass
     clus
vv    FAM135B MUTATED FAM135B WILD-TYPE
  I                 4                44
  II                3                79
  III               5                55
  IV                2                27
                   vv
clus                 R0  R1  R2  RX
  FAM135B MUTATED    13   0   1   0
  FAM135B WILD-TYPE 175   2  26   1
D207V10, multiclass
    clus
vv   FAM135B MUTATED FAM135B WILD-TYPE
  R0              13               175
  R1               0                 2
  R2               1                26
  RX               0                 1
D207V11, continuous

Clustering(208) Variable = CYP7B1 MUTATION ANALYSIS
D208V1, survival
                  sevent
clus2                0   1
  CYP7B1 MUTATED     4   1
  CYP7B1 WILD-TYPE 102  13
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               5              115 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
               1               13 
$`CYP7B1 MUTATED`
TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-A020 TCGA-AG-A02N 
       30.02         4.01        20.98        10.98        61.94 

$`CYP7B1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 
       18.02        40.93        16.31         0.95        15.85        10.62 
TCGA-AF-2692 TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 
       13.55        12.72        10.39         1.02         1.02         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 
        1.02         0.99         1.02         0.95         0.99         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y 
        1.02        20.94        13.91         6.02        25.94        23.01 
TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W 
       17.03        15.91        13.02         1.02        12.00        70.03 
TCGA-AG-A01Y TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02X TCGA-AG-A032 
       63.98        49.94         1.94        38.93        40.96        38.01 
TCGA-AG-A036 
       72.07 

  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
            4.01             0.92 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
           61.94            72.07 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
           20.98            10.62 
[1] "4.0 - 61.9 (21.0)" "0.9 - 72.1 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CYP7B1 WILD-TYPE"   "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071       TCGA-AF-2689 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AF-2691       TCGA-AF-2692       TCGA-AF-3400       TCGA-AF-3913 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3581       TCGA-AG-3582       TCGA-AG-3583       TCGA-AG-3587 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3599       TCGA-AG-3726       TCGA-AG-3727       TCGA-AG-3878 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3887       TCGA-AG-3892       TCGA-AG-3893       TCGA-AG-3894 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-3999       TCGA-AG-4001       TCGA-AG-4007       TCGA-AG-4008 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A002       TCGA-AG-A008       TCGA-AG-A00C       TCGA-AG-A00H 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A00Y       TCGA-AG-A011       TCGA-AG-A014       TCGA-AG-A015 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A016       TCGA-AG-A01L       TCGA-AG-A01W       TCGA-AG-A01Y 
"CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A020       TCGA-AG-A025       TCGA-AG-A026       TCGA-AG-A02G 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
      TCGA-AG-A02N       TCGA-AG-A02X       TCGA-AG-A032       TCGA-AG-A036 
  "CYP7B1 MUTATED" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" "CYP7B1 WILD-TYPE" 
[1] "hr=" "1.1"
D208V2, continuous
D208V3, binary
                  cls
clus                 0   1
  CYP7B1 MUTATED     5   2
  CYP7B1 WILD-TYPE 149  66
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      5    2
  CYP7B1 WILD-TYPE  149   66
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  COLON               5              149
  RECTUM              2               66
D208V4, binary
                  cls
clus                 0   1
  CYP7B1 MUTATED     2   5
  CYP7B1 WILD-TYPE 105 112
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CYP7B1 MUTATED      2    5
  CYP7B1 WILD-TYPE  105  112
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  FEMALE              2              105
  MALE                5              112
                  vv
clus               COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  CYP7B1 MUTATED                      3                             2
  CYP7B1 WILD-TYPE                  125                            22
                  vv
clus               RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  CYP7B1 MUTATED                       1                              1
  CYP7B1 WILD-TYPE                    56                              7
D208V5, multiclass
                                clus
vv                               CYP7B1 MUTATED CYP7B1 WILD-TYPE
  COLON ADENOCARCINOMA                        3              125
  COLON MUCINOUS ADENOCARCINOMA               2               22
  RECTAL ADENOCARCINOMA                       1               56
  RECTAL MUCINOUS ADENOCARCINOMA              1                7
                  vv
clus                T1  T2  T3  T4
  CYP7B1 MUTATED     0   0   4   3
  CYP7B1 WILD-TYPE   9  47 146  14
D208V6, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  T1              0                9
  T2              0               47
  T3              4              146
  T4              3               14
                  vv
clus                N0  N1  N2
  CYP7B1 MUTATED     5   1   1
  CYP7B1 WILD-TYPE 129  43  45
D208V7, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  N0              5              129
  N1              1               43
  N2              1               45
                  vv
clus                M0  M1 M1A
  CYP7B1 MUTATED     6   1   0
  CYP7B1 WILD-TYPE 183  30   1
D208V8, multiclass
     clus
vv    CYP7B1 MUTATED CYP7B1 WILD-TYPE
  M0               6              183
  M1               1               30
  M1A              0                1
                  vv
clus                I II III IV
  CYP7B1 MUTATED    0  5   1  1
  CYP7B1 WILD-TYPE 48 77  59 28
D208V9, multiclass
     clus
vv    CYP7B1 MUTATED CYP7B1 WILD-TYPE
  I                0               48
  II               5               77
  III              1               59
  IV               1               28
                  vv
clus                R0  R1  R2  RX
  CYP7B1 MUTATED     6   0   1   0
  CYP7B1 WILD-TYPE 182   2  26   1
D208V10, multiclass
    clus
vv   CYP7B1 MUTATED CYP7B1 WILD-TYPE
  R0              6              182
  R1              0                2
  R2              1               26
  RX              0                1
D208V11, continuous

Clustering(209) Variable = SLC16A7 MUTATION ANALYSIS
D209V1, survival
                   sevent
clus2                 0   1
  SLC16A7 MUTATED     5   1
  SLC16A7 WILD-TYPE 101  13
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                6               114 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                1                13 
$`SLC16A7 MUTATED`
TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A010 TCGA-AG-3892 
        0.99         0.99         0.99         4.01        20.98         1.02 

$`SLC16A7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 
       16.31         0.95        15.85        10.62        13.55        12.72 
TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 
       10.39         1.02         1.02         2.01         1.02         0.99 
TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3887 TCGA-AG-3893 TCGA-AG-3894 
        1.02         0.95         0.99         0.92         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 
        1.02         1.02         1.02         1.02        20.94        13.91 
TCGA-AG-A00C TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 
        6.02        25.94        23.01        17.03        15.91        13.02 
TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
        1.02        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        61.94        40.96        38.01        72.07 

  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
             0.99              0.92 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
            20.98             72.07 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
            1.005            12.000 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 72.1 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071        TCGA-AF-2689 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400        TCGA-AF-3913 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583        TCGA-AG-3587 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3599        TCGA-AG-3726        TCGA-AG-3727        TCGA-AG-3878 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3887        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4007        TCGA-AG-4008 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A002        TCGA-AG-A008        TCGA-AG-A00C        TCGA-AG-A00H 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A00Y        TCGA-AG-A011        TCGA-AG-A014        TCGA-AG-A015 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A016        TCGA-AG-A01L        TCGA-AG-A01W        TCGA-AG-A01Y 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A020        TCGA-AG-A025        TCGA-AG-A026        TCGA-AG-A02G 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AG-A02X        TCGA-AG-A032        TCGA-AG-A036 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
[1] "hr=" "3.2"
D209V2, continuous
D209V3, binary
                   cls
clus                  0   1
  SLC16A7 MUTATED     8   1
  SLC16A7 WILD-TYPE 146  67
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      8    1
  SLC16A7 WILD-TYPE  146   67
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  COLON                8               146
  RECTUM               1                67
D209V4, binary
                   cls
clus                  0   1
  SLC16A7 MUTATED     5   4
  SLC16A7 WILD-TYPE 102 113
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      5    4
  SLC16A7 WILD-TYPE  102  113
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  FEMALE               5               102
  MALE                 4               113
                   vv
clus                COLON ADENOCARCINOMA COLON MUCINOUS ADENOCARCINOMA
  SLC16A7 MUTATED                      5                             3
  SLC16A7 WILD-TYPE                  123                            21
                   vv
clus                RECTAL ADENOCARCINOMA RECTAL MUCINOUS ADENOCARCINOMA
  SLC16A7 MUTATED                       1                              0
  SLC16A7 WILD-TYPE                    56                              8
D209V5, multiclass
                                clus
vv                               SLC16A7 MUTATED SLC16A7 WILD-TYPE
  COLON ADENOCARCINOMA                         5               123
  COLON MUCINOUS ADENOCARCINOMA                3                21
  RECTAL ADENOCARCINOMA                        1                56
  RECTAL MUCINOUS ADENOCARCINOMA               0                 8
                   vv
clus                 T1  T2  T3  T4
  SLC16A7 MUTATED     1   1   5   2
  SLC16A7 WILD-TYPE   8  46 145  15
D209V6, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  T1               1                 8
  T2               1                46
  T3               5               145
  T4               2                15
                   vv
clus                 N0  N1  N2
  SLC16A7 MUTATED     6   2   1
  SLC16A7 WILD-TYPE 128  42  45
D209V7, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  N0               6               128
  N1               2                42
  N2               1                45
                   vv
clus                 M0  M1 M1A
  SLC16A7 MUTATED     9   0   0
  SLC16A7 WILD-TYPE 180  31   1
D209V8, multiclass
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  M0                9               180
  M1                0                31
  M1A               0                 1
                   vv
clus                 I II III IV
  SLC16A7 MUTATED    2  4   3  0
  SLC16A7 WILD-TYPE 46 78  57 29
D209V9, multiclass
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  I                 2                46
  II                4                78
  III               3                57
  IV                0                29
                   vv
clus                 R0  R1  R2  RX
  SLC16A7 MUTATED     9   0   0   0
  SLC16A7 WILD-TYPE 179   2  27   1
D209V10, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  R0               9               179
  R1               0                 2
  R2               0                27
  RX               0                 1
D209V11, continuous
                       V1.D                          V2 
            "Time to Death"                       "AGE" 
                         V3                          V4 
  "PRIMARY.SITE.OF.DISEASE"                    "GENDER" 
                         V5                          V6 
        "HISTOLOGICAL.TYPE"               "PATHOLOGY.T" 
                         V7                          V8 
              "PATHOLOGY.N"       "PATHOLOGICSPREAD(M)" 
                         V9                         V10 
              "TUMOR.STAGE" "COMPLETENESS.OF.RESECTION" 
                        V11 
    "NUMBER.OF.LYMPH.NODES" 
> q(save="no")
