
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376195/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/COADREAD-TP/2909317/1.GDAC_mergedClustering.Finished/COADREAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=COADREAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"             "-oT=COADREAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=575, common to both=575
[1]  75 575
[1] "Amp Peak  1(1q31.1) mutation analysis"
[1] 3
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          134                           441 
  AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE 
                          134                           441 
[1] "Amp Peak  2(2q33.1) mutation analysis"
[1] 3
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          123                           452 
  AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE 
                          123                           452 
[1] "Amp Peak  3(5p12) mutation analysis"
[1] 3
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        107                         468 
  AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE 
                        107                         468 
[1] "Amp Peak  4(5q22.3) mutation analysis"
[1] 3
  AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE 
                           59                           516 
  AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE 
                           59                           516 
[1] "Amp Peak  5(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          146                           429 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                          146                           429 
[1] "Amp Peak  6(7p21.3) mutation analysis"
[1] 3
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                          337                           238 
  AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE 
                          337                           238 
[1] "Amp Peak  7(8p11.23) mutation analysis"
[1] 3
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                           196                            379 
  AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE 
                           196                            379 
[1] "Amp Peak  8(8p11.21) mutation analysis"
[1] 3
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                           238                            337 
  AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE 
                           238                            337 
[1] "Amp Peak  9(8q12.1) mutation analysis"
[1] 3
  AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE 
                          309                           266 
  AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE 
                          309                           266 
[1] "Amp Peak 10(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                           345                            230 
  AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE 
                           345                            230 
[1] "Amp Peak 11(10q22.3) mutation analysis"
[1] 3
  AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE 
                            35                            540 
  AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE 
                            35                            540 
[1] "Amp Peak 12(11p15.5) mutation analysis"
[1] 3
  AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE 
                           129                            446 
  AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE 
                           129                            446 
[1] "Amp Peak 13(12p13.32) mutation analysis"
[1] 3
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                            144                             431 
  AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE 
                            144                             431 
[1] "Amp Peak 14(13q12.13) mutation analysis"
[1] 3
  AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE 
                            371                             204 
  AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE 
                            371                             204 
[1] "Amp Peak 15(13q12.2) mutation analysis"
[1] 3
  AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE 
                           366                            209 
  AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE 
                           366                            209 
[1] "Amp Peak 16(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE 
                           371                            204 
  AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE 
                           371                            204 
[1] "Amp Peak 17(15q26.1) mutation analysis"
[1] 3
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            43                            532 
  AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE 
                            43                            532 
[1] "Amp Peak 18(16p11.2) mutation analysis"
[1] 3
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                           161                            414 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                           161                            414 
[1] "Amp Peak 19(17q12) mutation analysis"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                         144                          431 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                         144                          431 
[1] "Amp Peak 20(17q24.1) mutation analysis"
[1] 3
  AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE 
                           128                            447 
  AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE 
                           128                            447 
[1] "Amp Peak 21(19p13.2) mutation analysis"
[1] 3
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            97                            478 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                            97                            478 
[1] "Amp Peak 22(19q12) mutation analysis"
[1] 3
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                         122                          453 
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                         122                          453 
[1] "Amp Peak 23(20p11.23) mutation analysis"
[1] 3
  AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE 
                            301                             274 
  AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE 
                            301                             274 
[1] "Amp Peak 24(20p11.21) mutation analysis"
[1] 3
  AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE 
                            339                             236 
  AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE 
                            339                             236 
[1] "Amp Peak 25(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE 
                            439                             136 
  AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE 
                            439                             136 
[1] "Amp Peak 26(20q12) mutation analysis"
[1] 3
  AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE 
                         441                          134 
  AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE 
                         441                          134 
[1] "Amp Peak 27(20q13.32) mutation analysis"
[1] 3
  AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE 
                            444                             131 
  AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE 
                            444                             131 
[1] "Amp Peak 28(Xq28) mutation analysis"
[1] 3
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                        121                         454 
  AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE 
                        121                         454 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           222                            353 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                           222                            353 
[1] "Del Peak  2(1p33) mutation analysis"
[1] 3
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        156                         419 
  DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE 
                        156                         419 
[1] "Del Peak  3(1p13.2) mutation analysis"
[1] 3
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          157                           418 
  DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE 
                          157                           418 
[1] "Del Peak  4(2p12) mutation analysis"
[1] 3
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         20                         555 
  DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE 
                         20                         555 
[1] "Del Peak  5(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           33                           542 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           33                           542 
[1] "Del Peak  6(2q37.2) mutation analysis"
[1] 3
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           30                           545 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           30                           545 
[1] "Del Peak  7(3p26.3) mutation analysis"
[1] 3
  DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE 
                           84                           491 
  DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE 
                           84                           491 
[1] "Del Peak  8(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          104                           471 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          104                           471 
[1] "Del Peak  9(3q26.31) mutation analysis"
[1] 3
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            56                            519 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            56                            519 
[1] "Del Peak 10(4p16.1) mutation analysis"
[1] 3
  DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE 
                          182                           393 
  DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE 
                          182                           393 
[1] "Del Peak 11(4q22.1) mutation analysis"
[1] 3
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          198                           377 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                          198                           377 
[1] "Del Peak 12(4q35.1) mutation analysis"
[1] 3
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          211                           364 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                          211                           364 
[1] "Del Peak 13(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          140                           435 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                          140                           435 
[1] "Del Peak 14(5q22.2) mutation analysis"
[1] 3
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          172                           403 
  DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE 
                          172                           403 
[1] "Del Peak 15(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           78                           497 
  DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE 
                           78                           497 
[1] "Del Peak 16(6q26) mutation analysis"
[1] 3
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         90                         485 
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                         90                         485 
[1] "Del Peak 17(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           15                           560 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           15                           560 
[1] "Del Peak 18(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          272                           303 
  DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE 
                          272                           303 
[1] "Del Peak 19(8p22) mutation analysis"
[1] 3
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        285                         290 
  DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE 
                        285                         290 
[1] "Del Peak 20(8p11.21) mutation analysis"
[1] 3
  DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE 
                           124                            451 
  DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE 
                           124                            451 
[1] "Del Peak 21(8q11.1) mutation analysis"
[1] 3
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           44                           531 
  DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE 
                           44                           531 
[1] "Del Peak 22(9p24.2) mutation analysis"
[1] 3
  DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE 
                           78                           497 
  DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE 
                           78                           497 
[1] "Del Peak 23(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                           102                            473 
  DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE 
                           102                            473 
[1] "Del Peak 24(10q21.1) mutation analysis"
[1] 3
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                           118                            457 
  DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE 
                           118                            457 
[1] "Del Peak 25(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            145                             430 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                            145                             430 
[1] "Del Peak 26(10q25.2) mutation analysis"
[1] 3
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           140                            435 
  DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE 
                           140                            435 
[1] "Del Peak 27(11q22.3) mutation analysis"
[1] 3
  DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE 
                           104                            471 
  DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE 
                           104                            471 
[1] "Del Peak 28(12p13.1) mutation analysis"
[1] 3
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                            77                            498 
  DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE 
                            77                            498 
[1] "Del Peak 29(12q21.2) mutation analysis"
[1] 3
  DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE 
                            80                            495 
  DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE 
                            80                            495 
[1] "Del Peak 30(14q22.1) mutation analysis"
[1] 3
  DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE 
                           185                            390 
  DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE 
                           185                            390 
[1] "Del Peak 31(15q11.2) mutation analysis"
[1] 3
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                           233                            342 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                           233                            342 
[1] "Del Peak 32(15q21.1) mutation analysis"
[1] 3
  DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE 
                           227                            348 
  DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE 
                           227                            348 
[1] "Del Peak 33(15q22.33) mutation analysis"
[1] 3
  DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE 
                            217                             358 
  DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE 
                            217                             358 
[1] "Del Peak 34(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            58                            517 
  DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE 
                            58                            517 
[1] "Del Peak 35(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                            72                            503 
  DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE 
                            72                            503 
[1] "Del Peak 36(17p12) mutation analysis"
[1] 3
  DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE 
                         343                          232 
  DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE 
                         343                          232 
[1] "Del Peak 37(17q24.3) mutation analysis"
[1] 3
  DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE 
                            84                            491 
  DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE 
                            84                            491 
[1] "Del Peak 38(18p11.31) mutation analysis"
[1] 3
  DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE 
                            341                             234 
  DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE 
                            341                             234 
[1] "Del Peak 39(18q12.2) mutation analysis"
[1] 3
  DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE 
                           386                            189 
  DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE 
                           386                            189 
[1] "Del Peak 40(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE 
                           403                            172 
  DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE 
                           403                            172 
[1] "Del Peak 41(18q22.1) mutation analysis"
[1] 3
  DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE 
                           398                            177 
  DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE 
                           398                            177 
[1] "Del Peak 42(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE 
                            92                            483 
  DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE 
                            92                            483 
[1] "Del Peak 43(19q13.43) mutation analysis"
[1] 3
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                             68                             507 
  DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE 
                             68                             507 
[1] "Del Peak 44(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE 
                           179                            396 
  DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE 
                           179                            396 
[1] "Del Peak 45(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                           179                            396 
  DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE 
                           179                            396 
[1] "Del Peak 46(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE 
                           195                            380 
  DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE 
                           195                            380 
[1] "Del Peak 47(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE 
                            204                             371 
  DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE 
                            204                             371 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 575 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 575 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q31.1) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          14                            48
  CLUS_3                          18                            51
  CLUS_4                           5                            34
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          12                            49
  CLUS_2                          24                            90
  CLUS_3                          10                            30
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          59                           141
  CLUS_2                          34                           200
  CLUS_3                          26                            74
  CLUS_4                          15                            26
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          37                           106
  CLUS_2                          25                            88
  CLUS_3                          24                            67
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          20                            80
  CLUS_2                          41                           116
  CLUS_3                          36                            97
D1V6, multiclass
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          10                            28
  CLUS_2                          21                            60
  CLUS_3                          16                            40
  CLUS_4                           8                            58
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          25                            70
  CLUS_2                          11                            56
  CLUS_3                          19                            60
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          52                           184
  CLUS_2                          53                           168
  CLUS_3                          21                            61
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q31.1) MUTATED AMP PEAK  1(1Q31.1) WILD-TYPE
  CLUS_1                          52                           175
  CLUS_2                           8                            24
  CLUS_3                          66                           214

Clustering(2) Variable = Amp Peak  2(2q33.1) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                          15                            47
  CLUS_3                          16                            53
  CLUS_4                           2                            37
D2V2, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           6                            55
  CLUS_2                          23                            91
  CLUS_3                          11                            29
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          59                           141
  CLUS_2                          27                           207
  CLUS_3                          21                            79
  CLUS_4                          16                            25
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          45                            98
  CLUS_2                          17                            96
  CLUS_3                          17                            74
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          27                            73
  CLUS_2                          37                           120
  CLUS_3                          25                           108
D2V6, multiclass
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                           6                            32
  CLUS_2                          30                            51
  CLUS_3                          13                            43
  CLUS_4                           5                            61
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          21                            74
  CLUS_2                           5                            62
  CLUS_3                          28                            51
D2V9, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          43                           193
  CLUS_2                          56                           165
  CLUS_3                          17                            65
D2V10, multiclass
        clus
vv       AMP PEAK  2(2Q33.1) MUTATED AMP PEAK  2(2Q33.1) WILD-TYPE
  CLUS_1                          41                           186
  CLUS_2                           1                            31
  CLUS_3                          74                           206

Clustering(3) Variable = Amp Peak  3(5p12) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         7                          38
  CLUS_2                        20                          42
  CLUS_3                        12                          57
  CLUS_4                         6                          33
D3V2, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        12                          49
  CLUS_2                        25                          89
  CLUS_3                         8                          32
D3V3, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        51                         149
  CLUS_2                        21                         213
  CLUS_3                        24                          76
  CLUS_4                        11                          30
D3V4, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        27                         116
  CLUS_2                        21                          92
  CLUS_3                        14                          77
D3V5, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        15                          85
  CLUS_2                        33                         124
  CLUS_3                        23                         110
D3V6, multiclass
D3V7, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                         3                          35
  CLUS_2                        21                          60
  CLUS_3                        10                          46
  CLUS_4                        10                          56
D3V8, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        21                          74
  CLUS_2                         5                          62
  CLUS_3                        18                          61
D3V9, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        45                         191
  CLUS_2                        39                         182
  CLUS_3                        16                          66
D3V10, multiclass
        clus
vv       AMP PEAK  3(5P12) MUTATED AMP PEAK  3(5P12) WILD-TYPE
  CLUS_1                        46                         181
  CLUS_2                         3                          29
  CLUS_3                        51                         229

Clustering(4) Variable = Amp Peak  4(5q22.3) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           3                            42
  CLUS_2                           7                            55
  CLUS_3                           6                            63
  CLUS_4                           3                            36
D4V2, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           5                            56
  CLUS_2                          11                           103
  CLUS_3                           3                            37
D4V3, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          32                           168
  CLUS_2                          13                           221
  CLUS_3                           9                            91
  CLUS_4                           5                            36
D4V4, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          20                           123
  CLUS_2                           9                           104
  CLUS_3                          10                            81
D4V5, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          11                            89
  CLUS_2                          15                           142
  CLUS_3                          17                           116
D4V6, multiclass
D4V7, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           3                            35
  CLUS_2                          14                            67
  CLUS_3                           4                            52
  CLUS_4                           6                            60
D4V8, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                           9                            86
  CLUS_2                           3                            64
  CLUS_3                          15                            64
D4V9, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          21                           215
  CLUS_2                          27                           194
  CLUS_3                           7                            75
D4V10, multiclass
        clus
vv       AMP PEAK  4(5Q22.3) MUTATED AMP PEAK  4(5Q22.3) WILD-TYPE
  CLUS_1                          24                           203
  CLUS_2                           2                            30
  CLUS_3                          29                           251

Clustering(5) Variable = Amp Peak  5(6p21.1) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           8                            37
  CLUS_2                          18                            44
  CLUS_3                          23                            46
  CLUS_4                           4                            35
D5V2, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                           9                            52
  CLUS_2                          26                            88
  CLUS_3                          18                            22
D5V3, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          83                           117
  CLUS_2                          22                           212
  CLUS_3                          27                            73
  CLUS_4                          14                            27
D5V4, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          45                            98
  CLUS_2                          24                            89
  CLUS_3                          22                            69
D5V5, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          28                            72
  CLUS_2                          49                           108
  CLUS_3                          29                           104
D5V6, multiclass
D5V7, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          12                            26
  CLUS_2                          24                            57
  CLUS_3                          18                            38
  CLUS_4                           5                            61
D5V8, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          28                            67
  CLUS_2                           8                            59
  CLUS_3                          23                            56
D5V9, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          58                           178
  CLUS_2                          64                           157
  CLUS_3                          20                            62
D5V10, multiclass
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  CLUS_1                          56                           171
  CLUS_2                           2                            30
  CLUS_3                          84                           196

Clustering(6) Variable = Amp Peak  6(7p21.3) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          16                            29
  CLUS_2                          41                            21
  CLUS_3                          39                            30
  CLUS_4                          12                            27
D6V2, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          21                            40
  CLUS_2                          61                            53
  CLUS_3                          26                            14
D6V3, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         157                            43
  CLUS_2                          81                           153
  CLUS_3                          66                            34
  CLUS_4                          33                             8
D6V4, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         112                            31
  CLUS_2                          58                            55
  CLUS_3                          51                            40
D6V5, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          63                            37
  CLUS_2                          98                            59
  CLUS_3                          74                            59
D6V6, multiclass
D6V7, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          27                            11
  CLUS_2                          67                            14
  CLUS_3                          38                            18
  CLUS_4                          20                            46
D6V8, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                          64                            31
  CLUS_2                          26                            41
  CLUS_3                          62                            17
D6V9, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         125                           111
  CLUS_2                         145                            76
  CLUS_3                          50                            32
D6V10, multiclass
        clus
vv       AMP PEAK  6(7P21.3) MUTATED AMP PEAK  6(7P21.3) WILD-TYPE
  CLUS_1                         121                           106
  CLUS_2                          14                            18
  CLUS_3                         185                            95

Clustering(7) Variable = Amp Peak  7(8p11.23) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                           20                             42
  CLUS_3                           20                             49
  CLUS_4                           11                             28
D7V2, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           13                             48
  CLUS_2                           35                             79
  CLUS_3                           12                             28
D7V3, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           56                            144
  CLUS_2                           44                            190
  CLUS_3                           76                             24
  CLUS_4                           20                             21
D7V4, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           61                             82
  CLUS_2                           39                             74
  CLUS_3                           31                             60
D7V5, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           37                             63
  CLUS_2                           56                            101
  CLUS_3                           45                             88
D7V6, multiclass
D7V7, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           11                             27
  CLUS_2                           38                             43
  CLUS_3                           19                             37
  CLUS_4                           25                             41
D7V8, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           35                             60
  CLUS_2                           25                             42
  CLUS_3                           33                             46
D7V9, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           71                            165
  CLUS_2                           92                            129
  CLUS_3                           23                             59
D7V10, multiclass
        clus
vv       AMP PEAK  7(8P11.23) MUTATED AMP PEAK  7(8P11.23) WILD-TYPE
  CLUS_1                           66                            161
  CLUS_2                           12                             20
  CLUS_3                          108                            172

Clustering(8) Variable = Amp Peak  8(8p11.21) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           13                             32
  CLUS_2                           28                             34
  CLUS_3                           26                             43
  CLUS_4                           12                             27
D8V2, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           17                             44
  CLUS_2                           46                             68
  CLUS_3                           16                             24
D8V3, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           75                            125
  CLUS_2                           51                            183
  CLUS_3                           89                             11
  CLUS_4                           23                             18
D8V4, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           71                             72
  CLUS_2                           44                             69
  CLUS_3                           40                             51
D8V5, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           49                             51
  CLUS_2                           66                             91
  CLUS_3                           56                             77
D8V6, multiclass
D8V7, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           15                             23
  CLUS_2                           42                             39
  CLUS_3                           24                             32
  CLUS_4                           26                             40
D8V8, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           43                             52
  CLUS_2                           27                             40
  CLUS_3                           37                             42
D8V9, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           89                            147
  CLUS_2                          104                            117
  CLUS_3                           30                             52
D8V10, multiclass
        clus
vv       AMP PEAK  8(8P11.21) MUTATED AMP PEAK  8(8P11.21) WILD-TYPE
  CLUS_1                           84                            143
  CLUS_2                           15                             17
  CLUS_3                          124                            156

Clustering(9) Variable = Amp Peak  9(8q12.1) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          20                            25
  CLUS_2                          38                            24
  CLUS_3                          34                            35
  CLUS_4                          14                            25
D9V2, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          24                            37
  CLUS_2                          58                            56
  CLUS_3                          24                            16
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                         109                            91
  CLUS_2                          69                           165
  CLUS_3                          97                             3
  CLUS_4                          34                             7
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          94                            49
  CLUS_2                          54                            59
  CLUS_3                          52                            39
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          65                            35
  CLUS_2                          82                            75
  CLUS_3                          71                            62
D9V6, multiclass
D9V7, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          17                            21
  CLUS_2                          59                            22
  CLUS_3                          31                            25
  CLUS_4                          27                            39
D9V8, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                          55                            40
  CLUS_2                          27                            40
  CLUS_3                          52                            27
D9V9, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                         119                           117
  CLUS_2                         131                            90
  CLUS_3                          40                            42
D9V10, multiclass
        clus
vv       AMP PEAK  9(8Q12.1) MUTATED AMP PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                         111                           116
  CLUS_2                          18                            14
  CLUS_3                         161                           119

Clustering(10) Variable = Amp Peak 10(8q24.21) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           24                             21
  CLUS_2                           41                             21
  CLUS_3                           39                             30
  CLUS_4                           18                             21
D10V2, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           30                             31
  CLUS_2                           65                             49
  CLUS_3                           27                             13
D10V3, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          129                             71
  CLUS_2                           82                            152
  CLUS_3                           99                              1
  CLUS_4                           35                              6
D10V4, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          104                             39
  CLUS_2                           60                             53
  CLUS_3                           55                             36
D10V5, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           68                             32
  CLUS_2                           93                             64
  CLUS_3                           81                             52
D10V6, multiclass
D10V7, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           20                             18
  CLUS_2                           65                             16
  CLUS_3                           31                             25
  CLUS_4                           33                             33
D10V8, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                           58                             37
  CLUS_2                           33                             34
  CLUS_3                           58                             21
D10V9, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          136                            100
  CLUS_2                          142                             79
  CLUS_3                           46                             36
D10V10, multiclass
        clus
vv       AMP PEAK 10(8Q24.21) MUTATED AMP PEAK 10(8Q24.21) WILD-TYPE
  CLUS_1                          126                            101
  CLUS_2                           21                             11
  CLUS_3                          177                            103

Clustering(11) Variable = Amp Peak 11(10q22.3) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            3                             59
  CLUS_3                            4                             65
  CLUS_4                            1                             38
D11V2, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            5                             56
  CLUS_2                            3                            111
  CLUS_3                            3                             37
D11V3, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           14                            186
  CLUS_2                           11                            223
  CLUS_3                            7                             93
  CLUS_4                            3                             38
D11V4, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            8                            135
  CLUS_2                           10                            103
  CLUS_3                            5                             86
D11V5, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            5                             95
  CLUS_2                            6                            151
  CLUS_3                           10                            123
D11V6, multiclass
D11V7, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            2                             36
  CLUS_2                            6                             75
  CLUS_3                            1                             55
  CLUS_4                            3                             63
D11V8, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                            3                             92
  CLUS_2                            2                             65
  CLUS_3                            7                             72
D11V9, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           13                            223
  CLUS_2                           17                            204
  CLUS_3                            4                             78
D11V10, multiclass
        clus
vv       AMP PEAK 11(10Q22.3) MUTATED AMP PEAK 11(10Q22.3) WILD-TYPE
  CLUS_1                           13                            214
  CLUS_2                            0                             32
  CLUS_3                           21                            259

Clustering(12) Variable = Amp Peak 12(11p15.5) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                           21                             41
  CLUS_3                           24                             45
  CLUS_4                            3                             36
D12V2, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                            5                             56
  CLUS_2                           36                             78
  CLUS_3                           10                             30
D12V3, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           58                            142
  CLUS_2                           31                            203
  CLUS_3                           21                             79
  CLUS_4                           19                             22
D12V4, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           42                            101
  CLUS_2                           14                             99
  CLUS_3                           17                             74
D12V5, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           23                             77
  CLUS_2                           47                            110
  CLUS_3                           20                            113
D12V6, multiclass
D12V7, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                            6                             32
  CLUS_2                           28                             53
  CLUS_3                           11                             45
  CLUS_4                            3                             63
D12V8, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           17                             78
  CLUS_2                            3                             64
  CLUS_3                           28                             51
D12V9, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           59                            177
  CLUS_2                           51                            170
  CLUS_3                           14                             68
D12V10, multiclass
        clus
vv       AMP PEAK 12(11P15.5) MUTATED AMP PEAK 12(11P15.5) WILD-TYPE
  CLUS_1                           57                            170
  CLUS_2                            1                             31
  CLUS_3                           66                            214

Clustering(13) Variable = Amp Peak 13(12p13.32) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            15                              30
  CLUS_2                            10                              52
  CLUS_3                            15                              54
  CLUS_4                            11                              28
D13V2, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            16                              45
  CLUS_2                            27                              87
  CLUS_3                             8                              32
D13V3, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            43                             157
  CLUS_2                            60                             174
  CLUS_3                            32                              68
  CLUS_4                             9                              32
D13V4, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            28                             115
  CLUS_2                            34                              79
  CLUS_3                            24                              67
D13V5, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            24                              76
  CLUS_2                            37                             120
  CLUS_3                            32                             101
D13V6, multiclass
D13V7, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                             8                              30
  CLUS_2                            28                              53
  CLUS_3                            11                              45
  CLUS_4                            16                              50
D13V8, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            24                              71
  CLUS_2                            14                              53
  CLUS_3                            25                              54
D13V9, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            60                             176
  CLUS_2                            60                             161
  CLUS_3                            18                              64
D13V10, multiclass
        clus
vv       AMP PEAK 13(12P13.32) MUTATED AMP PEAK 13(12P13.32) WILD-TYPE
  CLUS_1                            59                             168
  CLUS_2                             9                              23
  CLUS_3                            70                             210

Clustering(14) Variable = Amp Peak 14(13q12.13) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            20                              25
  CLUS_2                            49                              13
  CLUS_3                            57                              12
  CLUS_4                            14                              25
D14V2, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            24                              37
  CLUS_2                            82                              32
  CLUS_3                            34                               6
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           194                               6
  CLUS_2                            86                             148
  CLUS_3                            66                              34
  CLUS_4                            25                              16
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           122                              21
  CLUS_2                            55                              58
  CLUS_3                            50                              41
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            67                              33
  CLUS_2                           113                              44
  CLUS_3                            79                              54
D14V6, multiclass
D14V7, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            29                               9
  CLUS_2                            67                              14
  CLUS_3                            37                              19
  CLUS_4                            19                              47
D14V8, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                            64                              31
  CLUS_2                            25                              42
  CLUS_3                            63                              16
D14V9, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           147                              89
  CLUS_2                           158                              63
  CLUS_3                            45                              37
D14V10, multiclass
        clus
vv       AMP PEAK 14(13Q12.13) MUTATED AMP PEAK 14(13Q12.13) WILD-TYPE
  CLUS_1                           140                              87
  CLUS_2                            19                              13
  CLUS_3                           191                              89

Clustering(15) Variable = Amp Peak 15(13q12.2) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           20                             25
  CLUS_2                           48                             14
  CLUS_3                           55                             14
  CLUS_4                           15                             24
D15V2, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           80                             34
  CLUS_3                           33                              7
D15V3, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          194                              6
  CLUS_2                           83                            151
  CLUS_3                           64                             36
  CLUS_4                           25                             16
D15V4, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          122                             21
  CLUS_2                           53                             60
  CLUS_3                           50                             41
D15V5, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           66                             34
  CLUS_2                          110                             47
  CLUS_3                           80                             53
D15V6, multiclass
D15V7, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           29                              9
  CLUS_2                           66                             15
  CLUS_3                           37                             19
  CLUS_4                           19                             47
D15V8, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                           64                             31
  CLUS_2                           25                             42
  CLUS_3                           62                             17
D15V9, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          145                             91
  CLUS_2                          155                             66
  CLUS_3                           45                             37
D15V10, multiclass
        clus
vv       AMP PEAK 15(13Q12.2) MUTATED AMP PEAK 15(13Q12.2) WILD-TYPE
  CLUS_1                          138                             89
  CLUS_2                           19                             13
  CLUS_3                          188                             92

Clustering(16) Variable = Amp Peak 16(13q22.1) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           21                             24
  CLUS_2                           47                             15
  CLUS_3                           54                             15
  CLUS_4                           15                             24
D16V2, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           25                             36
  CLUS_2                           81                             33
  CLUS_3                           31                              9
D16V3, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          193                              7
  CLUS_2                           88                            146
  CLUS_3                           66                             34
  CLUS_4                           24                             17
D16V4, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          121                             22
  CLUS_2                           58                             55
  CLUS_3                           51                             40
D16V5, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           65                             35
  CLUS_2                          110                             47
  CLUS_3                           79                             54
D16V6, multiclass
D16V7, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           30                              8
  CLUS_2                           69                             12
  CLUS_3                           35                             21
  CLUS_4                           23                             43
D16V8, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                           65                             30
  CLUS_2                           27                             40
  CLUS_3                           65                             14
D16V9, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          145                             91
  CLUS_2                          158                             63
  CLUS_3                           48                             34
D16V10, multiclass
        clus
vv       AMP PEAK 16(13Q22.1) MUTATED AMP PEAK 16(13Q22.1) WILD-TYPE
  CLUS_1                          139                             88
  CLUS_2                           17                             15
  CLUS_3                          195                             85

Clustering(17) Variable = Amp Peak 17(15q26.1) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            7                             55
  CLUS_3                            3                             66
  CLUS_4                            3                             36
D17V2, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            6                             55
  CLUS_2                            6                            108
  CLUS_3                            4                             36
D17V3, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           15                            185
  CLUS_2                           13                            221
  CLUS_3                           12                             88
  CLUS_4                            3                             38
D17V4, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           12                            131
  CLUS_2                            7                            106
  CLUS_3                            7                             84
D17V5, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           11                             89
  CLUS_2                           14                            143
  CLUS_3                           10                            123
D17V6, multiclass
D17V7, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            0                             38
  CLUS_2                            7                             74
  CLUS_3                            6                             50
  CLUS_4                            4                             62
D17V8, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                            2                             65
  CLUS_3                            8                             71
D17V9, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           19                            217
  CLUS_2                           16                            205
  CLUS_3                            5                             77
D17V10, multiclass
        clus
vv       AMP PEAK 17(15Q26.1) MUTATED AMP PEAK 17(15Q26.1) WILD-TYPE
  CLUS_1                           17                            210
  CLUS_2                            2                             30
  CLUS_3                           21                            259

Clustering(18) Variable = Amp Peak 18(16p11.2) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                           24                             38
  CLUS_3                           25                             44
  CLUS_4                            5                             34
D18V2, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           10                             51
  CLUS_2                           36                             78
  CLUS_3                           18                             22
D18V3, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                          101                             99
  CLUS_2                           22                            212
  CLUS_3                           25                             75
  CLUS_4                           13                             28
D18V4, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           54                             89
  CLUS_2                           22                             91
  CLUS_3                           19                             72
D18V5, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           31                             69
  CLUS_2                           54                            103
  CLUS_3                           28                            105
D18V6, multiclass
D18V7, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                           34                             47
  CLUS_3                           16                             40
  CLUS_4                            5                             61
D18V8, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           32                             63
  CLUS_2                            8                             59
  CLUS_3                           24                             55
D18V9, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           65                            171
  CLUS_2                           66                            155
  CLUS_3                           22                             60
D18V10, multiclass
        clus
vv       AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE
  CLUS_1                           66                            161
  CLUS_2                            4                             28
  CLUS_3                           83                            197

Clustering(19) Variable = Amp Peak 19(17q12) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          7                           38
  CLUS_2                         23                           39
  CLUS_3                         20                           49
  CLUS_4                          5                           34
D19V2, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         11                           50
  CLUS_2                         29                           85
  CLUS_3                         15                           25
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         69                          131
  CLUS_2                         27                          207
  CLUS_3                         36                           64
  CLUS_4                         12                           29
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         48                           95
  CLUS_2                         22                           91
  CLUS_3                         16                           75
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         25                           75
  CLUS_2                         45                          112
  CLUS_3                         30                          103
D19V6, multiclass
D19V7, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                          8                           30
  CLUS_2                         33                           48
  CLUS_3                         10                           46
  CLUS_4                          8                           58
D19V8, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         22                           73
  CLUS_2                          8                           59
  CLUS_3                         29                           50
D19V9, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         61                          175
  CLUS_2                         63                          158
  CLUS_3                         12                           70
D19V10, multiclass
        clus
vv       AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE
  CLUS_1                         58                          169
  CLUS_2                          4                           28
  CLUS_3                         74                          206

Clustering(20) Variable = Amp Peak 20(17q24.1) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                           19                             43
  CLUS_3                           20                             49
  CLUS_4                            5                             34
D20V2, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                            8                             53
  CLUS_2                           24                             90
  CLUS_3                           16                             24
D20V3, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           67                            133
  CLUS_2                           24                            210
  CLUS_3                           29                             71
  CLUS_4                            8                             33
D20V4, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           47                             96
  CLUS_2                           20                             93
  CLUS_3                           11                             80
D20V5, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           21                             79
  CLUS_2                           46                            111
  CLUS_3                           25                            108
D20V6, multiclass
D20V7, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                           32                             49
  CLUS_3                            7                             49
  CLUS_4                            8                             58
D20V8, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           20                             75
  CLUS_2                            8                             59
  CLUS_3                           28                             51
D20V9, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           52                            184
  CLUS_2                           60                            161
  CLUS_3                            7                             75
D20V10, multiclass
        clus
vv       AMP PEAK 20(17Q24.1) MUTATED AMP PEAK 20(17Q24.1) WILD-TYPE
  CLUS_1                           48                            179
  CLUS_2                            2                             30
  CLUS_3                           69                            211

Clustering(21) Variable = Amp Peak 21(19p13.2) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                           16                             46
  CLUS_3                           10                             59
  CLUS_4                            4                             35
D21V2, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            6                             55
  CLUS_2                           20                             94
  CLUS_3                            7                             33
D21V3, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           54                            146
  CLUS_2                           16                            218
  CLUS_3                           17                             83
  CLUS_4                           10                             31
D21V4, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           35                            108
  CLUS_2                           19                             94
  CLUS_3                           10                             81
D21V5, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           19                             81
  CLUS_2                           30                            127
  CLUS_3                           20                            113
D21V6, multiclass
D21V7, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                           18                             63
  CLUS_3                            7                             49
  CLUS_4                            8                             58
D21V8, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           16                             79
  CLUS_2                            8                             59
  CLUS_3                           16                             63
D21V9, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           33                            203
  CLUS_2                           42                            179
  CLUS_3                           16                             66
D21V10, multiclass
        clus
vv       AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE
  CLUS_1                           35                            192
  CLUS_2                            2                             30
  CLUS_3                           54                            226

Clustering(22) Variable = Amp Peak 22(19q12) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          6                           39
  CLUS_2                         21                           41
  CLUS_3                         13                           56
  CLUS_4                          5                           34
D22V2, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          5                           56
  CLUS_2                         30                           84
  CLUS_3                         10                           30
D22V3, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         68                          132
  CLUS_2                         25                          209
  CLUS_3                         19                           81
  CLUS_4                         10                           31
D22V4, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         37                          106
  CLUS_2                         24                           89
  CLUS_3                         15                           76
D22V5, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         20                           80
  CLUS_2                         41                          116
  CLUS_3                         25                          108
D22V6, multiclass
D22V7, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                          7                           31
  CLUS_2                         24                           57
  CLUS_3                         11                           45
  CLUS_4                          8                           58
D22V8, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         21                           74
  CLUS_2                          8                           59
  CLUS_3                         21                           58
D22V9, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         46                          190
  CLUS_2                         50                          171
  CLUS_3                         17                           65
D22V10, multiclass
        clus
vv       AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE
  CLUS_1                         47                          180
  CLUS_2                          4                           28
  CLUS_3                         62                          218

Clustering(23) Variable = Amp Peak 23(20p11.23) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                            16                              29
  CLUS_2                            35                              27
  CLUS_3                            43                              26
  CLUS_4                            15                              24
D23V2, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                            18                              43
  CLUS_2                            66                              48
  CLUS_3                            25                              15
D23V3, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                           120                              80
  CLUS_2                            85                             149
  CLUS_3                            55                              45
  CLUS_4                            41                               0
D23V4, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                            89                              54
  CLUS_2                            51                              62
  CLUS_3                            44                              47
D23V5, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                            53                              47
  CLUS_2                            85                              72
  CLUS_3                            55                              78
D23V6, multiclass
D23V7, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                            21                              17
  CLUS_2                            54                              27
  CLUS_3                            26                              30
  CLUS_4                            17                              49
D23V8, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                            49                              46
  CLUS_2                            18                              49
  CLUS_3                            51                              28
D23V9, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                           116                             120
  CLUS_2                           123                              98
  CLUS_3                            41                              41
D23V10, multiclass
        clus
vv       AMP PEAK 23(20P11.23) MUTATED AMP PEAK 23(20P11.23) WILD-TYPE
  CLUS_1                           111                             116
  CLUS_2                            16                              16
  CLUS_3                           153                             127

Clustering(24) Variable = Amp Peak 24(20p11.21) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            17                              28
  CLUS_2                            42                              20
  CLUS_3                            49                              20
  CLUS_4                            16                              23
D24V2, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            19                              42
  CLUS_2                            74                              40
  CLUS_3                            31                               9
D24V3, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           150                              50
  CLUS_2                            88                             146
  CLUS_3                            60                              40
  CLUS_4                            41                               0
D24V4, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           107                              36
  CLUS_2                            55                              58
  CLUS_3                            45                              46
D24V5, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            63                              37
  CLUS_2                            95                              62
  CLUS_3                            68                              65
D24V6, multiclass
D24V7, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            22                              16
  CLUS_2                            63                              18
  CLUS_3                            33                              23
  CLUS_4                            17                              49
D24V8, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                            56                              39
  CLUS_2                            18                              49
  CLUS_3                            61                              18
D24V9, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           130                             106
  CLUS_2                           141                              80
  CLUS_3                            44                              38
D24V10, multiclass
        clus
vv       AMP PEAK 24(20P11.21) MUTATED AMP PEAK 24(20P11.21) WILD-TYPE
  CLUS_1                           124                             103
  CLUS_2                            17                              15
  CLUS_3                           174                             106

Clustering(25) Variable = Amp Peak 25(20q11.21) mutation analysis
D25V1, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            19                              26
  CLUS_2                            61                               1
  CLUS_3                            63                               6
  CLUS_4                            21                              18
D25V2, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            24                              37
  CLUS_2                           103                              11
  CLUS_3                            37                               3
D25V3, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           199                               1
  CLUS_2                           116                             118
  CLUS_3                            83                              17
  CLUS_4                            41                               0
D25V4, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           139                               4
  CLUS_2                            65                              48
  CLUS_3                            62                              29
D25V5, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            78                              22
  CLUS_2                           127                              30
  CLUS_3                            94                              39
D25V6, multiclass
D25V7, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            31                               7
  CLUS_2                            80                               1
  CLUS_3                            45                              11
  CLUS_4                            22                              44
D25V8, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                            75                              20
  CLUS_2                            25                              42
  CLUS_3                            78                               1
D25V9, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           172                              64
  CLUS_2                           178                              43
  CLUS_3                            60                              22
D25V10, multiclass
        clus
vv       AMP PEAK 25(20Q11.21) MUTATED AMP PEAK 25(20Q11.21) WILD-TYPE
  CLUS_1                           167                              60
  CLUS_2                            19                              13
  CLUS_3                           224                              56

Clustering(26) Variable = Amp Peak 26(20q12) mutation analysis
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         18                           27
  CLUS_2                         61                            1
  CLUS_3                         63                            6
  CLUS_4                         20                           19
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         22                           39
  CLUS_2                        103                           11
  CLUS_3                         37                            3
D26V3, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        199                            1
  CLUS_2                        116                          118
  CLUS_3                         85                           15
  CLUS_4                         41                            0
D26V4, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        139                            4
  CLUS_2                         68                           45
  CLUS_3                         63                           28
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         80                           20
  CLUS_2                        128                           29
  CLUS_3                         93                           40
D26V6, multiclass
D26V7, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         31                            7
  CLUS_2                         80                            1
  CLUS_3                         46                           10
  CLUS_4                         23                           43
D26V8, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                         76                           19
  CLUS_2                         26                           41
  CLUS_3                         78                            1
D26V9, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        171                           65
  CLUS_2                        180                           41
  CLUS_3                         61                           21
D26V10, multiclass
        clus
vv       AMP PEAK 26(20Q12) MUTATED AMP PEAK 26(20Q12) WILD-TYPE
  CLUS_1                        166                           61
  CLUS_2                         19                           13
  CLUS_3                        227                           53

Clustering(27) Variable = Amp Peak 27(20q13.32) mutation analysis
D27V1, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                            19                              26
  CLUS_2                            61                               1
  CLUS_3                            64                               5
  CLUS_4                            22                              17
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                            25                              36
  CLUS_2                           104                              10
  CLUS_3                            37                               3
D27V3, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                           199                               1
  CLUS_2                           117                             117
  CLUS_3                            87                              13
  CLUS_4                            41                               0
D27V4, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                           138                               5
  CLUS_2                            68                              45
  CLUS_3                            63                              28
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                            80                              20
  CLUS_2                           128                              29
  CLUS_3                            94                              39
D27V6, multiclass
D27V7, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                            31                               7
  CLUS_2                            80                               1
  CLUS_3                            46                              10
  CLUS_4                            23                              43
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                            76                              19
  CLUS_2                            26                              41
  CLUS_3                            78                               1
D27V9, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                           174                              62
  CLUS_2                           180                              41
  CLUS_3                            61                              21
D27V10, multiclass
        clus
vv       AMP PEAK 27(20Q13.32) MUTATED AMP PEAK 27(20Q13.32) WILD-TYPE
  CLUS_1                           169                              58
  CLUS_2                            20                              12
  CLUS_3                           226                              54

Clustering(28) Variable = Amp Peak 28(Xq28) mutation analysis
D28V1, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                         7                          38
  CLUS_2                        17                          45
  CLUS_3                        12                          57
  CLUS_4                        10                          29
D28V2, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        13                          48
  CLUS_2                        27                          87
  CLUS_3                         6                          34
D28V3, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        51                         149
  CLUS_2                        25                         209
  CLUS_3                        32                          68
  CLUS_4                        13                          28
D28V4, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        35                         108
  CLUS_2                        24                          89
  CLUS_3                        12                          79
D28V5, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        25                          75
  CLUS_2                        47                         110
  CLUS_3                        16                         117
D28V6, multiclass
D28V7, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                         7                          31
  CLUS_2                        23                          58
  CLUS_3                        13                          43
  CLUS_4                         9                          57
D28V8, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        18                          77
  CLUS_2                         9                          58
  CLUS_3                        25                          54
D28V9, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        50                         186
  CLUS_2                        48                         173
  CLUS_3                        17                          65
D28V10, multiclass
        clus
vv       AMP PEAK 28(XQ28) MUTATED AMP PEAK 28(XQ28) WILD-TYPE
  CLUS_1                        46                         181
  CLUS_2                         8                          24
  CLUS_3                        61                         219

Clustering(29) Variable = Del Peak  1(1p36.11) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                           36                             26
  CLUS_3                           34                             35
  CLUS_4                            6                             33
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                           59                             55
  CLUS_3                           17                             23
D29V3, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                          110                             90
  CLUS_2                           52                            182
  CLUS_3                           34                             66
  CLUS_4                           26                             15
D29V4, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           72                             71
  CLUS_2                           26                             87
  CLUS_3                           29                             62
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           32                             68
  CLUS_2                           73                             84
  CLUS_3                           46                             87
D29V6, multiclass
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           15                             23
  CLUS_2                           40                             41
  CLUS_3                           27                             29
  CLUS_4                            9                             57
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           43                             52
  CLUS_2                           11                             56
  CLUS_3                           37                             42
D29V9, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           97                            139
  CLUS_2                           87                            134
  CLUS_3                           24                             58
D29V10, multiclass
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  CLUS_1                           91                            136
  CLUS_2                            5                             27
  CLUS_3                          112                            168

Clustering(30) Variable = Del Peak  2(1p33) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        12                          33
  CLUS_2                        22                          40
  CLUS_3                        21                          48
  CLUS_4                         3                          36
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        10                          51
  CLUS_2                        37                          77
  CLUS_3                        11                          29
D30V3, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        83                         117
  CLUS_2                        37                         197
  CLUS_3                        14                          86
  CLUS_4                        22                          19
D30V4, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        53                          90
  CLUS_2                        17                          96
  CLUS_3                        25                          66
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        22                          78
  CLUS_2                        50                         107
  CLUS_3                        35                          98
D30V6, multiclass
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        11                          27
  CLUS_2                        32                          49
  CLUS_3                        19                          37
  CLUS_4                         8                          58
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        31                          64
  CLUS_2                         9                          58
  CLUS_3                        30                          49
D30V9, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        62                         174
  CLUS_2                        65                         156
  CLUS_3                        19                          63
D30V10, multiclass
        clus
vv       DEL PEAK  2(1P33) MUTATED DEL PEAK  2(1P33) WILD-TYPE
  CLUS_1                        56                         171
  CLUS_2                         3                          29
  CLUS_3                        87                         193

Clustering(31) Variable = Del Peak  3(1p13.2) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          19                            43
  CLUS_3                          19                            50
  CLUS_4                           5                            34
D31V2, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            51
  CLUS_2                          36                            78
  CLUS_3                          10                            30
D31V3, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          82                           118
  CLUS_2                          39                           195
  CLUS_3                          18                            82
  CLUS_4                          18                            23
D31V4, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          51                            92
  CLUS_2                          22                            91
  CLUS_3                          24                            67
D31V5, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          27                            73
  CLUS_2                          46                           111
  CLUS_3                          36                            97
D31V6, multiclass
D31V7, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          10                            28
  CLUS_2                          31                            50
  CLUS_3                          19                            37
  CLUS_4                          10                            56
D31V8, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          32                            63
  CLUS_2                           8                            59
  CLUS_3                          30                            49
D31V9, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          62                           174
  CLUS_2                          63                           158
  CLUS_3                          20                            62
D31V10, multiclass
        clus
vv       DEL PEAK  3(1P13.2) MUTATED DEL PEAK  3(1P13.2) WILD-TYPE
  CLUS_1                          57                           170
  CLUS_2                           6                            26
  CLUS_3                          82                           198

Clustering(32) Variable = Del Peak  4(2p12) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         3                          42
  CLUS_2                         4                          58
  CLUS_3                         4                          65
  CLUS_4                         2                          37
D32V2, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         5                          56
  CLUS_2                         5                         109
  CLUS_3                         3                          37
D32V3, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                        12                         188
  CLUS_2                         1                         233
  CLUS_3                         5                          95
  CLUS_4                         2                          39
D32V4, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         6                         137
  CLUS_2                         0                         113
  CLUS_3                         0                          91
D32V5, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         5                          95
  CLUS_2                         7                         150
  CLUS_3                         3                         130
D32V6, multiclass
D32V7, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         2                          36
  CLUS_2                         1                          80
  CLUS_3                         2                          54
  CLUS_4                         0                          66
D32V8, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                         3                          92
  CLUS_2                         1                          66
  CLUS_3                         1                          78
D32V9, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                        14                         222
  CLUS_2                         5                         216
  CLUS_3                         0                          82
D32V10, multiclass
        clus
vv       DEL PEAK  4(2P12) MUTATED DEL PEAK  4(2P12) WILD-TYPE
  CLUS_1                        14                         213
  CLUS_2                         0                          32
  CLUS_3                         5                         275

Clustering(33) Variable = Del Peak  5(2q22.1) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           6                            56
  CLUS_3                           5                            64
  CLUS_4                           4                            35
D33V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           6                            55
  CLUS_2                           9                           105
  CLUS_3                           4                            36
D33V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          17                           183
  CLUS_2                           8                           226
  CLUS_3                           6                            94
  CLUS_4                           2                            39
D33V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                           136
  CLUS_2                           4                           109
  CLUS_3                           3                            88
D33V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           8                            92
  CLUS_2                           8                           149
  CLUS_3                           5                           128
D33V6, multiclass
D33V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           4                            77
  CLUS_3                           3                            53
  CLUS_4                           3                            63
D33V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           5                            90
  CLUS_2                           2                            65
  CLUS_3                           4                            75
D33V9, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          17                           219
  CLUS_2                           9                           212
  CLUS_3                           4                            78
D33V10, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          17                           210
  CLUS_2                           1                            31
  CLUS_3                          12                           268

Clustering(34) Variable = Del Peak  6(2q37.2) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           5                            57
  CLUS_3                           4                            65
  CLUS_4                           3                            36
D34V2, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           6                            55
  CLUS_2                           8                           106
  CLUS_3                           2                            38
D34V3, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          15                           185
  CLUS_2                           8                           226
  CLUS_3                           5                            95
  CLUS_4                           2                            39
D34V4, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           7                           136
  CLUS_2                           4                           109
  CLUS_3                           3                            88
D34V5, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           6                            94
  CLUS_2                          10                           147
  CLUS_3                           3                           130
D34V6, multiclass
D34V7, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           3                            78
  CLUS_3                           5                            51
  CLUS_4                           3                            63
D34V8, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                           8                            87
  CLUS_2                           3                            64
  CLUS_3                           1                            78
D34V9, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          17                           219
  CLUS_2                           8                           213
  CLUS_3                           4                            78
D34V10, multiclass
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  CLUS_1                          16                           211
  CLUS_2                           1                            31
  CLUS_3                          12                           268

Clustering(35) Variable = Del Peak  7(3p26.3) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          11                            34
  CLUS_2                           9                            53
  CLUS_3                          11                            58
  CLUS_4                           2                            37
D35V2, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                           8                            53
  CLUS_2                          18                            96
  CLUS_3                           7                            33
D35V3, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          35                           165
  CLUS_2                          29                           205
  CLUS_3                          11                            89
  CLUS_4                           9                            32
D35V4, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          17                           126
  CLUS_2                          17                            96
  CLUS_3                          17                            74
D35V5, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          15                            85
  CLUS_2                          25                           132
  CLUS_3                          20                           113
D35V6, multiclass
D35V7, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                          10                            71
  CLUS_3                          10                            46
  CLUS_4                           6                            60
D35V8, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          19                            76
  CLUS_2                           4                            63
  CLUS_3                          11                            68
D35V9, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          36                           200
  CLUS_2                          38                           183
  CLUS_3                           8                            74
D35V10, multiclass
        clus
vv       DEL PEAK  7(3P26.3) MUTATED DEL PEAK  7(3P26.3) WILD-TYPE
  CLUS_1                          35                           192
  CLUS_2                           3                            29
  CLUS_3                          44                           236

Clustering(36) Variable = Del Peak  8(3p14.2) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          13                            49
  CLUS_3                          13                            56
  CLUS_4                           6                            33
D36V2, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          14                            47
  CLUS_2                          23                            91
  CLUS_3                           8                            32
D36V3, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          39                           161
  CLUS_2                          40                           194
  CLUS_3                          18                            82
  CLUS_4                           7                            34
D36V4, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          21                           122
  CLUS_2                          22                            91
  CLUS_3                          16                            75
D36V5, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          16                            84
  CLUS_2                          28                           129
  CLUS_3                          24                           109
D36V6, multiclass
D36V7, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                          16                            65
  CLUS_3                           9                            47
  CLUS_4                           8                            58
D36V8, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          15                            80
  CLUS_2                          10                            57
  CLUS_3                          16                            63
D36V9, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          45                           191
  CLUS_2                          47                           174
  CLUS_3                           8                            74
D36V10, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          44                           183
  CLUS_2                           5                            27
  CLUS_3                          51                           229

Clustering(37) Variable = Del Peak  9(3q26.31) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            8                             54
  CLUS_3                            9                             60
  CLUS_4                            1                             38
D37V2, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            5                             56
  CLUS_2                           15                             99
  CLUS_3                            3                             37
D37V3, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           25                            175
  CLUS_2                           21                            213
  CLUS_3                            7                             93
  CLUS_4                            3                             38
D37V4, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           11                            132
  CLUS_2                           10                            103
  CLUS_3                           12                             79
D37V5, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            5                             95
  CLUS_2                           15                            142
  CLUS_3                           17                            116
D37V6, multiclass
D37V7, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            4                             34
  CLUS_2                           10                             71
  CLUS_3                            2                             54
  CLUS_4                            5                             61
D37V8, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                            6                             89
  CLUS_2                            3                             64
  CLUS_3                           12                             67
D37V9, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           27                            209
  CLUS_2                           24                            197
  CLUS_3                            3                             79
D37V10, multiclass
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  CLUS_1                           25                            202
  CLUS_2                            0                             32
  CLUS_3                           29                            251

Clustering(38) Variable = Del Peak 10(4p16.1) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          13                            32
  CLUS_2                          26                            36
  CLUS_3                          27                            42
  CLUS_4                           7                            32
D38V2, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          17                            44
  CLUS_2                          40                            74
  CLUS_3                          16                            24
D38V3, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          92                           108
  CLUS_2                          40                           194
  CLUS_3                          26                            74
  CLUS_4                          24                            17
D38V4, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          55                            88
  CLUS_2                          21                            92
  CLUS_3                          29                            62
D38V5, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          29                            71
  CLUS_2                          48                           109
  CLUS_3                          37                            96
D38V6, multiclass
D38V7, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          15                            23
  CLUS_2                          28                            53
  CLUS_3                          27                            29
  CLUS_4                           5                            61
D38V8, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          38                            57
  CLUS_2                           8                            59
  CLUS_3                          29                            50
D38V9, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          80                           156
  CLUS_2                          69                           152
  CLUS_3                          23                            59
D38V10, multiclass
        clus
vv       DEL PEAK 10(4P16.1) MUTATED DEL PEAK 10(4P16.1) WILD-TYPE
  CLUS_1                          76                           151
  CLUS_2                           5                            27
  CLUS_3                          91                           189

Clustering(39) Variable = Del Peak 11(4q22.1) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          16                            29
  CLUS_2                          26                            36
  CLUS_3                          29                            40
  CLUS_4                           6                            33
D39V2, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          15                            46
  CLUS_2                          43                            71
  CLUS_3                          19                            21
D39V3, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                         101                            99
  CLUS_2                          43                           191
  CLUS_3                          28                            72
  CLUS_4                          26                            15
D39V4, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          64                            79
  CLUS_2                          22                            91
  CLUS_3                          34                            57
D39V5, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          33                            67
  CLUS_2                          53                           104
  CLUS_3                          47                            86
D39V6, multiclass
D39V7, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          16                            22
  CLUS_2                          33                            48
  CLUS_3                          27                            29
  CLUS_4                           7                            59
D39V8, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          42                            53
  CLUS_2                          10                            57
  CLUS_3                          31                            48
D39V9, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          86                           150
  CLUS_2                          82                           139
  CLUS_3                          21                            61
D39V10, multiclass
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  CLUS_1                          78                           149
  CLUS_2                           8                            24
  CLUS_3                         103                           177

Clustering(40) Variable = Del Peak 12(4q35.1) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          14                            31
  CLUS_2                          29                            33
  CLUS_3                          29                            40
  CLUS_4                           7                            32
D40V2, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          18                            43
  CLUS_2                          42                            72
  CLUS_3                          19                            21
D40V3, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                         105                            95
  CLUS_2                          46                           188
  CLUS_3                          35                            65
  CLUS_4                          25                            16
D40V4, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          65                            78
  CLUS_2                          26                            87
  CLUS_3                          36                            55
D40V5, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          38                            62
  CLUS_2                          55                           102
  CLUS_3                          46                            87
D40V6, multiclass
D40V7, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          17                            21
  CLUS_2                          37                            44
  CLUS_3                          28                            28
  CLUS_4                          10                            56
D40V8, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          42                            53
  CLUS_2                          11                            56
  CLUS_3                          39                            40
D40V9, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          88                           148
  CLUS_2                          86                           135
  CLUS_3                          26                            56
D40V10, multiclass
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  CLUS_1                          83                           144
  CLUS_2                          10                            22
  CLUS_3                         107                           173

Clustering(41) Variable = Del Peak 13(5q11.2) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                          19                            43
  CLUS_3                          18                            51
  CLUS_4                           1                            38
D41V2, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          11                            50
  CLUS_2                          28                            86
  CLUS_3                          11                            29
D41V3, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          69                           131
  CLUS_2                          23                           211
  CLUS_3                          27                            73
  CLUS_4                          21                            20
D41V4, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          48                            95
  CLUS_2                          17                            96
  CLUS_3                          24                            67
D41V5, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          26                            74
  CLUS_2                          40                           117
  CLUS_3                          30                           103
D41V6, multiclass
D41V7, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          11                            27
  CLUS_2                          26                            55
  CLUS_3                          16                            40
  CLUS_4                           4                            62
D41V8, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          27                            68
  CLUS_2                           6                            61
  CLUS_3                          24                            55
D41V9, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          58                           178
  CLUS_2                          54                           167
  CLUS_3                          20                            62
D41V10, multiclass
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  CLUS_1                          52                           175
  CLUS_2                           8                            24
  CLUS_3                          72                           208

Clustering(42) Variable = Del Peak 14(5q22.2) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                           9                            36
  CLUS_2                          23                            39
  CLUS_3                          25                            44
  CLUS_4                           3                            36
D42V2, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          10                            51
  CLUS_2                          37                            77
  CLUS_3                          13                            27
D42V3, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          80                           120
  CLUS_2                          38                           196
  CLUS_3                          32                            68
  CLUS_4                          22                            19
D42V4, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          53                            90
  CLUS_2                          28                            85
  CLUS_3                          29                            62
D42V5, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          31                            69
  CLUS_2                          49                           108
  CLUS_3                          38                            95
D42V6, multiclass
D42V7, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          12                            26
  CLUS_2                          30                            51
  CLUS_3                          17                            39
  CLUS_4                           7                            59
D42V8, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          27                            68
  CLUS_2                          13                            54
  CLUS_3                          26                            53
D42V9, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          70                           166
  CLUS_2                          71                           150
  CLUS_3                          23                            59
D42V10, multiclass
        clus
vv       DEL PEAK 14(5Q22.2) MUTATED DEL PEAK 14(5Q22.2) WILD-TYPE
  CLUS_1                          66                           161
  CLUS_2                          10                            22
  CLUS_3                          88                           192

Clustering(43) Variable = Del Peak 15(6p25.3) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           5                            40
  CLUS_2                           8                            54
  CLUS_3                          10                            59
  CLUS_4                           7                            32
D43V2, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          11                            50
  CLUS_2                          14                           100
  CLUS_3                           5                            35
D43V3, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          22                           178
  CLUS_2                          28                           206
  CLUS_3                          19                            81
  CLUS_4                           9                            32
D43V4, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          22                           121
  CLUS_2                          10                           103
  CLUS_3                          13                            78
D43V5, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          12                            88
  CLUS_2                          19                           138
  CLUS_3                          16                           117
D43V6, multiclass
D43V7, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                           4                            34
  CLUS_2                          12                            69
  CLUS_3                           7                            49
  CLUS_4                           9                            57
D43V8, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          11                            84
  CLUS_2                           7                            60
  CLUS_3                          14                            65
D43V9, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          31                           205
  CLUS_2                          29                           192
  CLUS_3                          14                            68
D43V10, multiclass
        clus
vv       DEL PEAK 15(6P25.3) MUTATED DEL PEAK 15(6P25.3) WILD-TYPE
  CLUS_1                          30                           197
  CLUS_2                           4                            28
  CLUS_3                          40                           240

Clustering(44) Variable = Del Peak 16(6q26) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         7                          38
  CLUS_2                        12                          50
  CLUS_3                        15                          54
  CLUS_4                         8                          31
D44V2, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        13                          48
  CLUS_2                        20                          94
  CLUS_3                         9                          31
D44V3, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        32                         168
  CLUS_2                        28                         206
  CLUS_3                        18                          82
  CLUS_4                        12                          29
D44V4, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        21                         122
  CLUS_2                        13                         100
  CLUS_3                        12                          79
D44V5, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        16                          84
  CLUS_2                        29                         128
  CLUS_3                        15                         118
D44V6, multiclass
D44V7, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         5                          33
  CLUS_2                        12                          69
  CLUS_3                        10                          46
  CLUS_4                         9                          57
D44V8, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        15                          80
  CLUS_2                         9                          58
  CLUS_3                        12                          67
D44V9, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        45                         191
  CLUS_2                        29                         192
  CLUS_3                        14                          68
D44V10, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        41                         186
  CLUS_2                         6                          26
  CLUS_3                        41                         239

Clustering(45) Variable = Del Peak 17(7q31.1) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           3                            42
  CLUS_2                           1                            61
  CLUS_3                           0                            69
  CLUS_4                           1                            38
D45V2, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            60
  CLUS_2                           3                           111
  CLUS_3                           1                            39
D45V3, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           5                           195
  CLUS_2                           6                           228
  CLUS_3                           3                            97
  CLUS_4                           1                            40
D45V4, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           4                           139
  CLUS_2                           3                           110
  CLUS_3                           2                            89
D45V5, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           1                            99
  CLUS_2                           4                           153
  CLUS_3                           5                           128
D45V6, multiclass
D45V7, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                            36
  CLUS_2                           3                            78
  CLUS_3                           1                            55
  CLUS_4                           1                            65
D45V8, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                            93
  CLUS_2                           3                            64
  CLUS_3                           2                            77
D45V9, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           7                           229
  CLUS_2                           8                           213
  CLUS_3                           0                            82
D45V10, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           8                           219
  CLUS_2                           1                            31
  CLUS_3                           6                           274

Clustering(46) Variable = Del Peak 18(8p23.2) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          19                            26
  CLUS_2                          41                            21
  CLUS_3                          37                            32
  CLUS_4                          10                            29
D46V2, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          22                            39
  CLUS_2                          61                            53
  CLUS_3                          24                            16
D46V3, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         135                            65
  CLUS_2                          42                           192
  CLUS_3                          77                            23
  CLUS_4                          18                            23
D46V4, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          89                            54
  CLUS_2                          35                            78
  CLUS_3                          38                            53
D46V5, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          53                            47
  CLUS_2                          76                            81
  CLUS_3                          57                            76
D46V6, multiclass
D46V7, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          20                            18
  CLUS_2                          48                            33
  CLUS_3                          30                            26
  CLUS_4                          14                            52
D46V8, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                          53                            42
  CLUS_2                          18                            49
  CLUS_3                          41                            38
D46V9, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         114                           122
  CLUS_2                         106                           115
  CLUS_3                          36                            46
D46V10, multiclass
        clus
vv       DEL PEAK 18(8P23.2) MUTATED DEL PEAK 18(8P23.2) WILD-TYPE
  CLUS_1                         105                           122
  CLUS_2                          12                            20
  CLUS_3                         139                           141

Clustering(47) Variable = Del Peak 19(8p22) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        17                          28
  CLUS_2                        40                          22
  CLUS_3                        41                          28
  CLUS_4                        12                          27
D47V2, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        23                          38
  CLUS_2                        62                          52
  CLUS_3                        25                          15
D47V3, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       142                          58
  CLUS_2                        44                         190
  CLUS_3                        80                          20
  CLUS_4                        19                          22
D47V4, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        94                          49
  CLUS_2                        39                          74
  CLUS_3                        39                          52
D47V5, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        55                          45
  CLUS_2                        82                          75
  CLUS_3                        60                          73
D47V6, multiclass
D47V7, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        22                          16
  CLUS_2                        51                          30
  CLUS_3                        32                          24
  CLUS_4                        14                          52
D47V8, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                        56                          39
  CLUS_2                        19                          48
  CLUS_3                        44                          35
D47V9, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       118                         118
  CLUS_2                       113                         108
  CLUS_3                        38                          44
D47V10, multiclass
        clus
vv       DEL PEAK 19(8P22) MUTATED DEL PEAK 19(8P22) WILD-TYPE
  CLUS_1                       108                         119
  CLUS_2                        16                          16
  CLUS_3                       145                         135

Clustering(48) Variable = Del Peak 20(8p11.21) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           22                             40
  CLUS_3                           20                             49
  CLUS_4                            3                             36
D48V2, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           10                             51
  CLUS_2                           34                             80
  CLUS_3                           12                             28
D48V3, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           68                            132
  CLUS_2                           28                            206
  CLUS_3                           18                             82
  CLUS_4                           10                             31
D48V4, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           32                            111
  CLUS_2                           17                             96
  CLUS_3                           18                             73
D48V5, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           22                             78
  CLUS_2                           38                            119
  CLUS_3                           23                            110
D48V6, multiclass
D48V7, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                            6                             32
  CLUS_2                           21                             60
  CLUS_3                           11                             45
  CLUS_4                            6                             60
D48V8, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           22                             73
  CLUS_2                            6                             61
  CLUS_3                           16                             63
D48V9, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           60                            176
  CLUS_2                           41                            180
  CLUS_3                           15                             67
D48V10, multiclass
        clus
vv       DEL PEAK 20(8P11.21) MUTATED DEL PEAK 20(8P11.21) WILD-TYPE
  CLUS_1                           54                            173
  CLUS_2                            8                             24
  CLUS_3                           54                            226

Clustering(49) Variable = Del Peak 21(8q11.1) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                          11                            51
  CLUS_3                           8                            61
  CLUS_4                           2                            37
D49V2, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           7                            54
  CLUS_2                          15                            99
  CLUS_3                           3                            37
D49V3, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          26                           174
  CLUS_2                          13                           221
  CLUS_3                           2                            98
  CLUS_4                           3                            38
D49V4, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          10                           133
  CLUS_2                           5                           108
  CLUS_3                           4                            87
D49V5, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           8                            92
  CLUS_2                          13                           144
  CLUS_3                           8                           125
D49V6, multiclass
D49V7, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           1                            37
  CLUS_2                           3                            78
  CLUS_3                           6                            50
  CLUS_4                           3                            63
D49V8, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                           8                            87
  CLUS_2                           2                            65
  CLUS_3                           3                            76
D49V9, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          26                           210
  CLUS_2                          12                           209
  CLUS_3                           5                            77
D49V10, multiclass
        clus
vv       DEL PEAK 21(8Q11.1) MUTATED DEL PEAK 21(8Q11.1) WILD-TYPE
  CLUS_1                          26                           201
  CLUS_2                           0                            32
  CLUS_3                          17                           263

Clustering(50) Variable = Del Peak 22(9p24.2) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           4                            41
  CLUS_2                           9                            53
  CLUS_3                          12                            57
  CLUS_4                           2                            37
D50V2, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           4                            57
  CLUS_2                          19                            95
  CLUS_3                           4                            36
D50V3, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          40                           160
  CLUS_2                          18                           216
  CLUS_3                          13                            87
  CLUS_4                           7                            34
D50V4, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          28                           115
  CLUS_2                          10                           103
  CLUS_3                          13                            78
D50V5, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          12                            88
  CLUS_2                          28                           129
  CLUS_3                          16                           117
D50V6, multiclass
D50V7, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                           8                            30
  CLUS_2                          15                            66
  CLUS_3                           7                            49
  CLUS_4                           3                            63
D50V8, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          14                            81
  CLUS_2                           2                            65
  CLUS_3                          17                            62
D50V9, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          28                           208
  CLUS_2                          37                           184
  CLUS_3                          10                            72
D50V10, multiclass
        clus
vv       DEL PEAK 22(9P24.2) MUTATED DEL PEAK 22(9P24.2) WILD-TYPE
  CLUS_1                          28                           199
  CLUS_2                           2                            30
  CLUS_3                          45                           235

Clustering(51) Variable = Del Peak 23(10p15.3) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                            8                             54
  CLUS_3                           17                             52
  CLUS_4                            5                             34
D51V2, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            7                             54
  CLUS_2                           22                             92
  CLUS_3                            7                             33
D51V3, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           41                            159
  CLUS_2                           21                            213
  CLUS_3                           21                             79
  CLUS_4                           19                             22
D51V4, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           35                            108
  CLUS_2                           13                            100
  CLUS_3                           16                             75
D51V5, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           17                             83
  CLUS_2                           35                            122
  CLUS_3                           22                            111
D51V6, multiclass
D51V7, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                           16                             65
  CLUS_3                           17                             39
  CLUS_4                            5                             61
D51V8, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           24                             71
  CLUS_2                            7                             60
  CLUS_3                           14                             65
D51V9, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           38                            198
  CLUS_2                           42                            179
  CLUS_3                           15                             67
D51V10, multiclass
        clus
vv       DEL PEAK 23(10P15.3) MUTATED DEL PEAK 23(10P15.3) WILD-TYPE
  CLUS_1                           37                            190
  CLUS_2                            3                             29
  CLUS_3                           55                            225

Clustering(52) Variable = Del Peak 24(10q21.1) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            8                             37
  CLUS_2                           11                             51
  CLUS_3                           20                             49
  CLUS_4                            5                             34
D52V2, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            7                             54
  CLUS_2                           28                             86
  CLUS_3                            9                             31
D52V3, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           49                            151
  CLUS_2                           20                            214
  CLUS_3                           27                             73
  CLUS_4                           22                             19
D52V4, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           37                            106
  CLUS_2                           19                             94
  CLUS_3                           16                             75
D52V5, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           19                             81
  CLUS_2                           38                            119
  CLUS_3                           25                            108
D52V6, multiclass
D52V7, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                            9                             29
  CLUS_2                           18                             63
  CLUS_3                           16                             40
  CLUS_4                            7                             59
D52V8, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           24                             71
  CLUS_2                            7                             60
  CLUS_3                           19                             60
D52V9, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           49                            187
  CLUS_2                           48                            173
  CLUS_3                           14                             68
D52V10, multiclass
        clus
vv       DEL PEAK 24(10Q21.1) MUTATED DEL PEAK 24(10Q21.1) WILD-TYPE
  CLUS_1                           47                            180
  CLUS_2                            4                             28
  CLUS_3                           60                            220

Clustering(53) Variable = Del Peak 25(10q23.31) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            10                              35
  CLUS_2                            10                              52
  CLUS_3                            23                              46
  CLUS_4                             8                              31
D53V2, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            12                              49
  CLUS_2                            27                              87
  CLUS_3                            12                              28
D53V3, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            55                             145
  CLUS_2                            35                             199
  CLUS_3                            32                              68
  CLUS_4                            23                              18
D53V4, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            45                              98
  CLUS_2                            25                              88
  CLUS_3                            20                              71
D53V5, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            25                              75
  CLUS_2                            47                             110
  CLUS_3                            30                             103
D53V6, multiclass
D53V7, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            10                              28
  CLUS_2                            26                              55
  CLUS_3                            18                              38
  CLUS_4                             6                              60
D53V8, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            26                              69
  CLUS_2                            10                              57
  CLUS_3                            24                              55
D53V9, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            57                             179
  CLUS_2                            60                             161
  CLUS_3                            20                              62
D53V10, multiclass
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  CLUS_1                            56                             171
  CLUS_2                             5                              27
  CLUS_3                            76                             204

Clustering(54) Variable = Del Peak 26(10q25.2) mutation analysis
D54V1, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            9                             36
  CLUS_2                           13                             49
  CLUS_3                           22                             47
  CLUS_4                            7                             32
D54V2, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                            9                             52
  CLUS_2                           30                             84
  CLUS_3                           12                             28
D54V3, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           56                            144
  CLUS_2                           30                            204
  CLUS_3                           26                             74
  CLUS_4                           28                             13
D54V4, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           43                            100
  CLUS_2                           22                             91
  CLUS_3                           19                             72
D54V5, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           26                             74
  CLUS_2                           43                            114
  CLUS_3                           32                            101
D54V6, multiclass
D54V7, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           11                             27
  CLUS_2                           26                             55
  CLUS_3                           17                             39
  CLUS_4                            4                             62
D54V8, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           28                             67
  CLUS_2                            5                             62
  CLUS_3                           25                             54
D54V9, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           58                            178
  CLUS_2                           55                            166
  CLUS_3                           19                             63
D54V10, multiclass
        clus
vv       DEL PEAK 26(10Q25.2) MUTATED DEL PEAK 26(10Q25.2) WILD-TYPE
  CLUS_1                           57                            170
  CLUS_2                            6                             26
  CLUS_3                           69                            211

Clustering(55) Variable = Del Peak 27(11q22.3) mutation analysis
D55V1, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                            7                             38
  CLUS_2                            9                             53
  CLUS_3                           16                             53
  CLUS_4                            8                             31
D55V2, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           11                             50
  CLUS_2                           24                             90
  CLUS_3                            5                             35
D55V3, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           45                            155
  CLUS_2                           30                            204
  CLUS_3                           22                             78
  CLUS_4                            7                             34
D55V4, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           27                            116
  CLUS_2                           14                             99
  CLUS_3                           21                             70
D55V5, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           14                             86
  CLUS_2                           26                            131
  CLUS_3                           27                            106
D55V6, multiclass
D55V7, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           12                             26
  CLUS_2                           12                             69
  CLUS_3                           13                             43
  CLUS_4                            7                             59
D55V8, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           19                             76
  CLUS_2                            9                             58
  CLUS_3                           16                             63
D55V9, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           48                            188
  CLUS_2                           40                            181
  CLUS_3                           13                             69
D55V10, multiclass
        clus
vv       DEL PEAK 27(11Q22.3) MUTATED DEL PEAK 27(11Q22.3) WILD-TYPE
  CLUS_1                           46                            181
  CLUS_2                            3                             29
  CLUS_3                           52                            228

Clustering(56) Variable = Del Peak 28(12p13.1) mutation analysis
D56V1, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                           13                             49
  CLUS_3                           10                             59
  CLUS_4                            0                             39
D56V2, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            2                             59
  CLUS_2                           20                             94
  CLUS_3                            5                             35
D56V3, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           44                            156
  CLUS_2                           10                            224
  CLUS_3                           13                             87
  CLUS_4                           10                             31
D56V4, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           25                            118
  CLUS_2                           14                             99
  CLUS_3                           11                             80
D56V5, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           12                             88
  CLUS_2                           24                            133
  CLUS_3                           22                            111
D56V6, multiclass
D56V7, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                            8                             30
  CLUS_2                           12                             69
  CLUS_3                            8                             48
  CLUS_4                            3                             63
D56V8, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           12                             83
  CLUS_2                            6                             61
  CLUS_3                           13                             66
D56V9, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           31                            205
  CLUS_2                           36                            185
  CLUS_3                            9                             73
D56V10, multiclass
        clus
vv       DEL PEAK 28(12P13.1) MUTATED DEL PEAK 28(12P13.1) WILD-TYPE
  CLUS_1                           31                            196
  CLUS_2                            5                             27
  CLUS_3                           40                            240

Clustering(57) Variable = Del Peak 29(12q21.2) mutation analysis
D57V1, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                           13                             49
  CLUS_3                           10                             59
  CLUS_4                            2                             37
D57V2, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                            3                             58
  CLUS_2                           21                             93
  CLUS_3                            7                             33
D57V3, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                           45                            155
  CLUS_2                           13                            221
  CLUS_3                           12                             88
  CLUS_4                           10                             31
D57V4, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                           22                            121
  CLUS_2                           11                            102
  CLUS_3                           14                             77
D57V5, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                           13                             87
  CLUS_2                           23                            134
  CLUS_3                           18                            115
D57V6, multiclass
D57V7, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                           15                             66
  CLUS_3                           10                             46
  CLUS_4                            3                             63
D57V8, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                           15                             80
  CLUS_2                            6                             61
  CLUS_3                           14                             65
D57V9, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                           34                            202
  CLUS_2                           33                            188
  CLUS_3                            8                             74
D57V10, multiclass
        clus
vv       DEL PEAK 29(12Q21.2) MUTATED DEL PEAK 29(12Q21.2) WILD-TYPE
  CLUS_1                           31                            196
  CLUS_2                            4                             28
  CLUS_3                           40                            240

Clustering(58) Variable = Del Peak 30(14q22.1) mutation analysis
D58V1, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                           31                             31
  CLUS_3                           30                             39
  CLUS_4                            5                             34
D58V2, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                            9                             52
  CLUS_2                           47                             67
  CLUS_3                           20                             20
D58V3, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                          124                             76
  CLUS_2                           31                            203
  CLUS_3                           17                             83
  CLUS_4                           13                             28
D58V4, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                           63                             80
  CLUS_2                           19                             94
  CLUS_3                           24                             67
D58V5, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                           31                             69
  CLUS_2                           71                             86
  CLUS_3                           29                            104
D58V6, multiclass
D58V7, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                           14                             24
  CLUS_2                           40                             41
  CLUS_3                           16                             40
  CLUS_4                            4                             62
D58V8, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                           34                             61
  CLUS_2                            7                             60
  CLUS_3                           33                             46
D58V9, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                           77                            159
  CLUS_2                           78                            143
  CLUS_3                           19                             63
D58V10, multiclass
        clus
vv       DEL PEAK 30(14Q22.1) MUTATED DEL PEAK 30(14Q22.1) WILD-TYPE
  CLUS_1                           74                            153
  CLUS_2                            7                             25
  CLUS_3                           93                            187

Clustering(59) Variable = Del Peak 31(15q11.2) mutation analysis
D59V1, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           13                             32
  CLUS_2                           33                             29
  CLUS_3                           36                             33
  CLUS_4                            8                             31
D59V2, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           17                             44
  CLUS_2                           51                             63
  CLUS_3                           22                             18
D59V3, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                          122                             78
  CLUS_2                           41                            193
  CLUS_3                           40                             60
  CLUS_4                           30                             11
D59V4, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           70                             73
  CLUS_2                           33                             80
  CLUS_3                           36                             55
D59V5, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           39                             61
  CLUS_2                           64                             93
  CLUS_3                           52                             81
D59V6, multiclass
D59V7, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           16                             22
  CLUS_2                           45                             36
  CLUS_3                           24                             32
  CLUS_4                            9                             57
D59V8, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           42                             53
  CLUS_2                           11                             56
  CLUS_3                           41                             38
D59V9, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           93                            143
  CLUS_2                           95                            126
  CLUS_3                           29                             53
D59V10, multiclass
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  CLUS_1                           88                            139
  CLUS_2                            8                             24
  CLUS_3                          121                            159

Clustering(60) Variable = Del Peak 32(15q21.1) mutation analysis
D60V1, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                           32                             30
  CLUS_3                           36                             33
  CLUS_4                            8                             31
D60V2, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           19                             42
  CLUS_2                           51                             63
  CLUS_3                           21                             19
D60V3, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                          117                             83
  CLUS_2                           41                            193
  CLUS_3                           40                             60
  CLUS_4                           29                             12
D60V4, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           67                             76
  CLUS_2                           30                             83
  CLUS_3                           35                             56
D60V5, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           39                             61
  CLUS_2                           64                             93
  CLUS_3                           48                             85
D60V6, multiclass
D60V7, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           16                             22
  CLUS_2                           44                             37
  CLUS_3                           21                             35
  CLUS_4                            7                             59
D60V8, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           39                             56
  CLUS_2                           10                             57
  CLUS_3                           39                             40
D60V9, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           92                            144
  CLUS_2                           89                            132
  CLUS_3                           29                             53
D60V10, multiclass
        clus
vv       DEL PEAK 32(15Q21.1) MUTATED DEL PEAK 32(15Q21.1) WILD-TYPE
  CLUS_1                           90                            137
  CLUS_2                            9                             23
  CLUS_3                          111                            169

Clustering(61) Variable = Del Peak 33(15q22.33) mutation analysis
D61V1, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            13                              32
  CLUS_2                            30                              32
  CLUS_3                            34                              35
  CLUS_4                             6                              33
D61V2, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            15                              46
  CLUS_2                            46                              68
  CLUS_3                            22                              18
D61V3, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                           113                              87
  CLUS_2                            35                             199
  CLUS_3                            40                              60
  CLUS_4                            29                              12
D61V4, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            68                              75
  CLUS_2                            28                              85
  CLUS_3                            34                              57
D61V5, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            39                              61
  CLUS_2                            59                              98
  CLUS_3                            47                              86
D61V6, multiclass
D61V7, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            15                              23
  CLUS_2                            44                              37
  CLUS_3                            24                              32
  CLUS_4                             5                              61
D61V8, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            40                              55
  CLUS_2                             9                              58
  CLUS_3                            39                              40
D61V9, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            85                             151
  CLUS_2                            85                             136
  CLUS_3                            31                              51
D61V10, multiclass
        clus
vv       DEL PEAK 33(15Q22.33) MUTATED DEL PEAK 33(15Q22.33) WILD-TYPE
  CLUS_1                            82                             145
  CLUS_2                             7                              25
  CLUS_3                           112                             168

Clustering(62) Variable = Del Peak 34(16p13.3) mutation analysis
D62V1, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            8                             37
  CLUS_2                            8                             54
  CLUS_3                            7                             62
  CLUS_4                            1                             38
D62V2, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            6                             55
  CLUS_2                           11                            103
  CLUS_3                            7                             33
D62V3, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           20                            180
  CLUS_2                           18                            216
  CLUS_3                           14                             86
  CLUS_4                            6                             35
D62V4, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           16                            127
  CLUS_2                           10                            103
  CLUS_3                            7                             84
D62V5, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           10                             90
  CLUS_2                           18                            139
  CLUS_3                           12                            121
D62V6, multiclass
D62V7, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            8                             73
  CLUS_3                            7                             49
  CLUS_4                            6                             60
D62V8, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                            8                             87
  CLUS_2                            4                             63
  CLUS_3                           12                             67
D62V9, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           26                            210
  CLUS_2                           19                            202
  CLUS_3                            9                             73
D62V10, multiclass
        clus
vv       DEL PEAK 34(16P13.3) MUTATED DEL PEAK 34(16P13.3) WILD-TYPE
  CLUS_1                           25                            202
  CLUS_2                            4                             28
  CLUS_3                           25                            255

Clustering(63) Variable = Del Peak 35(16q23.1) mutation analysis
D63V1, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           12                             33
  CLUS_2                            7                             55
  CLUS_3                            6                             63
  CLUS_4                            5                             34
D63V2, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           15                             46
  CLUS_2                            7                            107
  CLUS_3                            8                             32
D63V3, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           18                            182
  CLUS_2                           33                            201
  CLUS_3                           17                             83
  CLUS_4                            4                             37
D63V4, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           13                            130
  CLUS_2                           17                             96
  CLUS_3                           11                             80
D63V5, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           11                             89
  CLUS_2                           21                            136
  CLUS_3                           15                            118
D63V6, multiclass
D63V7, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                            3                             35
  CLUS_2                            8                             73
  CLUS_3                            8                             48
  CLUS_4                           13                             53
D63V8, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           11                             84
  CLUS_2                           13                             54
  CLUS_3                            8                             71
D63V9, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           30                            206
  CLUS_2                           27                            194
  CLUS_3                            8                             74
D63V10, multiclass
        clus
vv       DEL PEAK 35(16Q23.1) MUTATED DEL PEAK 35(16Q23.1) WILD-TYPE
  CLUS_1                           31                            196
  CLUS_2                            3                             29
  CLUS_3                           31                            249

Clustering(64) Variable = Del Peak 36(17p12) mutation analysis
D64V1, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         18                           27
  CLUS_2                         50                           12
  CLUS_3                         51                           18
  CLUS_4                         13                           26
D64V2, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         23                           38
  CLUS_2                         78                           36
  CLUS_3                         31                            9
D64V3, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                        169                           31
  CLUS_2                         69                          165
  CLUS_3                         75                           25
  CLUS_4                         30                           11
D64V4, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                        112                           31
  CLUS_2                         50                           63
  CLUS_3                         44                           47
D64V5, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         62                           38
  CLUS_2                         99                           58
  CLUS_3                         74                           59
D64V6, multiclass
D64V7, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         26                           12
  CLUS_2                         60                           21
  CLUS_3                         35                           21
  CLUS_4                         17                           49
D64V8, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                         58                           37
  CLUS_2                         22                           45
  CLUS_3                         58                           21
D64V9, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                        140                           96
  CLUS_2                        142                           79
  CLUS_3                         40                           42
D64V10, multiclass
        clus
vv       DEL PEAK 36(17P12) MUTATED DEL PEAK 36(17P12) WILD-TYPE
  CLUS_1                        132                           95
  CLUS_2                         18                           14
  CLUS_3                        172                          108

Clustering(65) Variable = Del Peak 37(17q24.3) mutation analysis
D65V1, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                           11                             51
  CLUS_3                           11                             58
  CLUS_4                            5                             34
D65V2, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            9                             52
  CLUS_2                           19                             95
  CLUS_3                            5                             35
D65V3, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           37                            163
  CLUS_2                           23                            211
  CLUS_3                           15                             85
  CLUS_4                            9                             32
D65V4, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           19                            124
  CLUS_2                           14                             99
  CLUS_3                           16                             75
D65V5, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           15                             85
  CLUS_2                           16                            141
  CLUS_3                           17                            116
D65V6, multiclass
D65V7, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                            7                             31
  CLUS_2                           14                             67
  CLUS_3                           11                             45
  CLUS_4                            5                             61
D65V8, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           16                             79
  CLUS_2                            5                             62
  CLUS_3                           16                             63
D65V9, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           34                            202
  CLUS_2                           33                            188
  CLUS_3                           13                             69
D65V10, multiclass
        clus
vv       DEL PEAK 37(17Q24.3) MUTATED DEL PEAK 37(17Q24.3) WILD-TYPE
  CLUS_1                           35                            192
  CLUS_2                            2                             30
  CLUS_3                           43                            237

Clustering(66) Variable = Del Peak 38(18p11.31) mutation analysis
D66V1, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            12                              33
  CLUS_2                            52                              10
  CLUS_3                            52                              17
  CLUS_4                            11                              28
D66V2, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            16                              45
  CLUS_2                            79                              35
  CLUS_3                            32                               8
D66V3, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                           176                              24
  CLUS_2                            65                             169
  CLUS_3                            64                              36
  CLUS_4                            36                               5
D66V4, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                           120                              23
  CLUS_2                            40                              73
  CLUS_3                            49                              42
D66V5, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            58                              42
  CLUS_2                            98                              59
  CLUS_3                            76                              57
D66V6, multiclass
D66V7, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            23                              15
  CLUS_2                            71                              10
  CLUS_3                            36                              20
  CLUS_4                             8                              58
D66V8, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                            62                              33
  CLUS_2                            12                              55
  CLUS_3                            64                              15
D66V9, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                           134                             102
  CLUS_2                           145                              76
  CLUS_3                            40                              42
D66V10, multiclass
        clus
vv       DEL PEAK 38(18P11.31) MUTATED DEL PEAK 38(18P11.31) WILD-TYPE
  CLUS_1                           131                              96
  CLUS_2                            16                              16
  CLUS_3                           172                             108

Clustering(67) Variable = Del Peak 39(18q12.2) mutation analysis
D67V1, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           54                              8
  CLUS_3                           56                             13
  CLUS_4                           15                             24
D67V2, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           23                             38
  CLUS_2                           87                             27
  CLUS_3                           34                              6
D67V3, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                          187                             13
  CLUS_2                           76                            158
  CLUS_3                           86                             14
  CLUS_4                           37                              4
D67V4, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                          132                             11
  CLUS_2                           51                             62
  CLUS_3                           52                             39
D67V5, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           67                             33
  CLUS_2                          111                             46
  CLUS_3                           82                             51
D67V6, multiclass
D67V7, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           29                              9
  CLUS_2                           72                              9
  CLUS_3                           41                             15
  CLUS_4                           12                             54
D67V8, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                           67                             28
  CLUS_2                           21                             46
  CLUS_3                           66                             13
D67V9, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                          154                             82
  CLUS_2                          163                             58
  CLUS_3                           45                             37
D67V10, multiclass
        clus
vv       DEL PEAK 39(18Q12.2) MUTATED DEL PEAK 39(18Q12.2) WILD-TYPE
  CLUS_1                          146                             81
  CLUS_2                           17                             15
  CLUS_3                          199                             81

Clustering(68) Variable = Del Peak 40(18q21.2) mutation analysis
D68V1, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           55                              7
  CLUS_3                           57                             12
  CLUS_4                           16                             23
D68V2, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           24                             37
  CLUS_2                           89                             25
  CLUS_3                           34                              6
D68V3, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          190                             10
  CLUS_2                           84                            150
  CLUS_3                           91                              9
  CLUS_4                           38                              3
D68V4, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          134                              9
  CLUS_2                           61                             52
  CLUS_3                           54                             37
D68V5, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           70                             30
  CLUS_2                          119                             38
  CLUS_3                           85                             48
D68V6, multiclass
D68V7, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           29                              9
  CLUS_2                           73                              8
  CLUS_3                           42                             14
  CLUS_4                           18                             48
D68V8, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                           69                             26
  CLUS_2                           25                             42
  CLUS_3                           68                             11
D68V9, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          158                             78
  CLUS_2                          173                             48
  CLUS_3                           47                             35
D68V10, multiclass
        clus
vv       DEL PEAK 40(18Q21.2) MUTATED DEL PEAK 40(18Q21.2) WILD-TYPE
  CLUS_1                          150                             77
  CLUS_2                           21                             11
  CLUS_3                          207                             73

Clustering(69) Variable = Del Peak 41(18q22.1) mutation analysis
D69V1, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           19                             26
  CLUS_2                           55                              7
  CLUS_3                           56                             13
  CLUS_4                           17                             22
D69V2, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           26                             35
  CLUS_2                           87                             27
  CLUS_3                           34                              6
D69V3, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                          190                             10
  CLUS_2                           80                            154
  CLUS_3                           89                             11
  CLUS_4                           39                              2
D69V4, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                          133                             10
  CLUS_2                           59                             54
  CLUS_3                           52                             39
D69V5, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           69                             31
  CLUS_2                          117                             40
  CLUS_3                           85                             48
D69V6, multiclass
D69V7, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           29                              9
  CLUS_2                           73                              8
  CLUS_3                           42                             14
  CLUS_4                           18                             48
D69V8, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                           68                             27
  CLUS_2                           26                             41
  CLUS_3                           68                             11
D69V9, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                          158                             78
  CLUS_2                          170                             51
  CLUS_3                           46                             36
D69V10, multiclass
        clus
vv       DEL PEAK 41(18Q22.1) MUTATED DEL PEAK 41(18Q22.1) WILD-TYPE
  CLUS_1                          150                             77
  CLUS_2                           20                             12
  CLUS_3                          204                             76

Clustering(70) Variable = Del Peak 42(19p13.3) mutation analysis
D70V1, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           10                             35
  CLUS_2                           16                             46
  CLUS_3                           10                             59
  CLUS_4                            3                             36
D70V2, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            9                             52
  CLUS_2                           23                             91
  CLUS_3                            7                             33
D70V3, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           44                            156
  CLUS_2                           17                            217
  CLUS_3                           21                             79
  CLUS_4                           10                             31
D70V4, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           23                            120
  CLUS_2                           15                             98
  CLUS_3                           13                             78
D70V5, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           16                             84
  CLUS_2                           19                            138
  CLUS_3                           22                            111
D70V6, multiclass
D70V7, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                            6                             32
  CLUS_2                           15                             66
  CLUS_3                           11                             45
  CLUS_4                            3                             63
D70V8, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           15                             80
  CLUS_2                            3                             64
  CLUS_3                           17                             62
D70V9, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           40                            196
  CLUS_2                           38                            183
  CLUS_3                           10                             72
D70V10, multiclass
        clus
vv       DEL PEAK 42(19P13.3) MUTATED DEL PEAK 42(19P13.3) WILD-TYPE
  CLUS_1                           37                            190
  CLUS_2                            4                             28
  CLUS_3                           47                            233

Clustering(71) Variable = Del Peak 43(19q13.43) mutation analysis
D71V1, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                             4                              41
  CLUS_2                             7                              55
  CLUS_3                             7                              62
  CLUS_4                             5                              34
D71V2, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                             5                              56
  CLUS_2                            13                             101
  CLUS_3                             5                              35
D71V3, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            28                             172
  CLUS_2                            13                             221
  CLUS_3                            16                              84
  CLUS_4                            11                              30
D71V4, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            21                             122
  CLUS_2                            12                             101
  CLUS_3                            10                              81
D71V5, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            10                              90
  CLUS_2                            16                             141
  CLUS_3                            14                             119
D71V6, multiclass
D71V7, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                             7                              31
  CLUS_2                            16                              65
  CLUS_3                             7                              49
  CLUS_4                             2                              64
D71V8, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            12                              83
  CLUS_2                             3                              64
  CLUS_3                            17                              62
D71V9, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            25                             211
  CLUS_2                            31                             190
  CLUS_3                             6                              76
D71V10, multiclass
        clus
vv       DEL PEAK 43(19Q13.43) MUTATED DEL PEAK 43(19Q13.43) WILD-TYPE
  CLUS_1                            22                             205
  CLUS_2                             4                              28
  CLUS_3                            36                             244

Clustering(72) Variable = Del Peak 44(20p12.1) mutation analysis
D72V1, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           30                             32
  CLUS_3                           22                             47
  CLUS_4                            9                             30
D72V2, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           12                             49
  CLUS_2                           44                             70
  CLUS_3                           16                             24
D72V3, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           96                            104
  CLUS_2                           46                            188
  CLUS_3                           37                             63
  CLUS_4                            0                             41
D72V4, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           63                             80
  CLUS_2                           21                             92
  CLUS_3                           20                             71
D72V5, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           25                             75
  CLUS_2                           54                            103
  CLUS_3                           44                             89
D72V6, multiclass
D72V7, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           14                             24
  CLUS_2                           33                             48
  CLUS_3                           17                             39
  CLUS_4                           12                             54
D72V8, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           28                             67
  CLUS_2                           14                             53
  CLUS_3                           34                             45
D72V9, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           74                            162
  CLUS_2                           74                            147
  CLUS_3                           19                             63
D72V10, multiclass
        clus
vv       DEL PEAK 44(20P12.1) MUTATED DEL PEAK 44(20P12.1) WILD-TYPE
  CLUS_1                           69                            158
  CLUS_2                           10                             22
  CLUS_3                           88                            192

Clustering(73) Variable = Del Peak 45(20p12.1) mutation analysis
D73V1, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           30                             32
  CLUS_3                           22                             47
  CLUS_4                            9                             30
D73V2, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           12                             49
  CLUS_2                           44                             70
  CLUS_3                           16                             24
D73V3, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           96                            104
  CLUS_2                           46                            188
  CLUS_3                           37                             63
  CLUS_4                            0                             41
D73V4, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           63                             80
  CLUS_2                           21                             92
  CLUS_3                           20                             71
D73V5, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           25                             75
  CLUS_2                           54                            103
  CLUS_3                           44                             89
D73V6, multiclass
D73V7, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           14                             24
  CLUS_2                           33                             48
  CLUS_3                           17                             39
  CLUS_4                           12                             54
D73V8, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           28                             67
  CLUS_2                           14                             53
  CLUS_3                           34                             45
D73V9, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           74                            162
  CLUS_2                           74                            147
  CLUS_3                           19                             63
D73V10, multiclass
        clus
vv       DEL PEAK 45(20P12.1) MUTATED DEL PEAK 45(20P12.1) WILD-TYPE
  CLUS_1                           69                            158
  CLUS_2                           10                             22
  CLUS_3                           88                            192

Clustering(74) Variable = Del Peak 46(21q11.2) mutation analysis
D74V1, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           11                             34
  CLUS_2                           31                             31
  CLUS_3                           23                             46
  CLUS_4                            6                             33
D74V2, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           14                             47
  CLUS_2                           43                             71
  CLUS_3                           14                             26
D74V3, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           95                            105
  CLUS_2                           50                            184
  CLUS_3                           28                             72
  CLUS_4                           22                             19
D74V4, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           63                             80
  CLUS_2                           30                             83
  CLUS_3                           29                             62
D74V5, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           31                             69
  CLUS_2                           60                             97
  CLUS_3                           47                             86
D74V6, multiclass
D74V7, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           15                             23
  CLUS_2                           36                             45
  CLUS_3                           23                             33
  CLUS_4                           10                             56
D74V8, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           37                             58
  CLUS_2                           13                             54
  CLUS_3                           34                             45
D74V9, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           78                            158
  CLUS_2                           84                            137
  CLUS_3                           23                             59
D74V10, multiclass
        clus
vv       DEL PEAK 46(21Q11.2) MUTATED DEL PEAK 46(21Q11.2) WILD-TYPE
  CLUS_1                           77                            150
  CLUS_2                            5                             27
  CLUS_3                          103                            177

Clustering(75) Variable = Del Peak 47(22q13.32) mutation analysis
D75V1, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            15                              30
  CLUS_2                            29                              33
  CLUS_3                            32                              37
  CLUS_4                             8                              31
D75V2, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            14                              47
  CLUS_2                            49                              65
  CLUS_3                            21                              19
D75V3, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                           108                              92
  CLUS_2                            45                             189
  CLUS_3                            28                              72
  CLUS_4                            23                              18
D75V4, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            55                              88
  CLUS_2                            27                              86
  CLUS_3                            34                              57
D75V5, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            31                              69
  CLUS_2                            66                              91
  CLUS_3                            43                              90
D75V6, multiclass
D75V7, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            16                              22
  CLUS_2                            32                              49
  CLUS_3                            22                              34
  CLUS_4                             9                              57
D75V8, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            33                              62
  CLUS_2                            14                              53
  CLUS_3                            32                              47
D75V9, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            86                             150
  CLUS_2                            82                             139
  CLUS_3                            26                              56
D75V10, multiclass
        clus
vv       DEL PEAK 47(22Q13.32) MUTATED DEL PEAK 47(22Q13.32) WILD-TYPE
  CLUS_1                            86                             141
  CLUS_2                             4                              28
  CLUS_3                           104                             176
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
