GDAC_MergedClusteringPipeline Execution Log 4:20 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/DLBC-TP/2902425/3.GDAC_CNMFselectcluster.Finished/DLBC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile DLBC-TP
Execution Times:
Submitted: 04:20:22 09-04-13
Completed:
Elapsed: 05 hrs 28 mins 58 secs

step 1. GDAC_mergedClustering [id: 374878] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/DLBC-TP/2902425/3.GDAC_CNMFselectcluster.Finished/DLBC-TP.bestclus.txt
mergedfile DLBC-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf
mRNAseqhc
miRseqcnmf
miRseqhc
Output Files:
 DLBC-TP.mergedcluster.txt
 DLBC-TP.transferedmergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 04:20:23 09-04-13
Completed: 04:20:48 09-04-13
Elapsed: 00 hrs 00 mins 25 secs

step 2. GDAC_mergedReport [id: 374879]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster DLBC-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 04:20:23 09-04-13
Completed: 09:49:18 09-04-13
Elapsed: 05 hrs 28 mins 55 secs