GDAC_MergedClusteringPipeline Execution Log 9:27 AM Tue Apr 9, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2904208/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/GBM-TP/2904225/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 mirnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2900566/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 mirnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mirnaConsensusClusteringPipeline/GBM-TP/2859825/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2861643/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2906636/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile GBM-TP
GDAC_mergedClustering1 PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2900567/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/GBM-TP/2859821/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2900568/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/GBM-TP/2859822/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
Execution Times:
Submitted: 09:27:43 09-04-13
Completed:
Elapsed: 00 hrs 55 mins 37 secs

step 1. GDAC_mergedClustering [id: 375522] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2904208/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
mrnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/GBM-TP/2904225/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
mirnacnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2900566/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
mirnahc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mirnaConsensusClusteringPipeline/GBM-TP/2859825/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2861643/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2906636/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
mergedfile GBM-TP
PredictionU133aTCGA file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2900567/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
PredictionU133aPhilips file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/GBM-TP/2859821/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/GBM-TP/2900568/3.GDAC_CNMFselectcluster.Finished/GBM-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/GBM-TP/2859822/3.GDAC_selectBestcluster.Finished/GBM-TP.bestclus.txt
miRseqcnmf
miRseqhc
Output Files:
 GBM-TP.transferedmergedcluster.txt
 GBM-TP.mergedcluster.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 09:27:44 09-04-13
Completed: 09:28:21 09-04-13
Elapsed: 00 hrs 00 mins 37 secs

step 2. GDAC_mergedReport [id: 375523]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster GBM-TP.transferedmergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 09:27:44 09-04-13
Completed: 10:23:19 09-04-13
Elapsed: 00 hrs 55 mins 34 secs